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1.
PLoS One ; 13(12): e0208957, 2018.
Article in English | MEDLINE | ID: mdl-30533036

ABSTRACT

OBJECTIVE: The objective of the present study was to investigate Epstein-Barr virus (EBV) infection as an environmental factor for the development of rheumatoid arthritis (RA). METHODS: Synovial tissues were collected during surgery from 128 RA and 98 osteoarthritis (OA) patients. DNA was extracted from synovial tissues. The EBV gene was assessed by nested PCR for the amplification of EBV nuclear antigen-1 (EBNA-1). The nucleotide sequence of the PCR product was elucidated. HLA-DRB1 genotyping was also performed. RESULTS: EBV DNA was more frequently detected in the synovial tissues of RA patients (32.8%) than OA patients (15.3%) (p<0.01). The frequency of EBNA-1 variants did not significantly differ between RA and OA (RA: 17%, OA: 13%). The population with the HLA-DRB1 shared epitope (SE) was significantly higher in RA patients (70.3%) than in OA patients (44.9%) (p<0.001). In RA patients, the presence of EBV DNA was similar among SE-positive and -negative patients (SE-positive: 34.4%, -negative: 28.9%). The population with the EBNA-1 variant did not significantly differ between SE-positive and -negative patients (SE-positive: 12.9%, -negative: 27.3%). DISCUSSION: The present results indicate that EBV infection contributes to the onset of RA and chronic inflammation in synovial tissues. The frequency of EBNA-1 gene variants was low and not significantly different between RA and OA, suggesting that EBNA-1 gene variants are not a risk factor for RA. HLA-DRB1 with SE is a genetic risk factor for the development of RA. However, neither the presence of EBV nor EBNA-1 gene variants differed between SE-positive and -negative RA patients. Therefore, these two risk factors, SE and EBV, may be independent. CONCLUSION: EBV infection may be an environmental risk factor for the development of RA, while nucleotide variants of EBNA-1 do not appear to contribute to its development.


Subject(s)
Arthritis, Rheumatoid/virology , Epstein-Barr Virus Infections/genetics , Epstein-Barr Virus Nuclear Antigens/immunology , Herpesvirus 4, Human/genetics , Arthritis, Rheumatoid/genetics , Arthritis, Rheumatoid/pathology , Epitopes/genetics , Epitopes/immunology , Epstein-Barr Virus Infections/physiopathology , Epstein-Barr Virus Infections/virology , Epstein-Barr Virus Nuclear Antigens/genetics , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Female , HLA-DRB1 Chains/genetics , HLA-DRB1 Chains/immunology , Herpesvirus 4, Human/isolation & purification , Herpesvirus 4, Human/pathogenicity , Humans , Male , Osteoarthritis/genetics , Osteoarthritis/physiopathology , Osteoarthritis/virology , Risk Factors , Synovial Fluid/virology
2.
Ann Biol Clin (Paris) ; 76(1): 75-80, 2018 01 01.
Article in French | MEDLINE | ID: mdl-29336321

ABSTRACT

Breast cancer is the common malignancy that affects women worldwide, but conventional risk factors account for only a small proportion of these cases. A possible viral etiology for breast cancer has been proposed and Epstein-Barr virus (EBV) is a widely studied candidate virus. The objective of this study is to determine the association of EBV infection with infiltrating ductal carcinomas (IDC). This descriptive study was carried out in the laboratory of developmental biology and differentiation, from 2012 to 2014. Of 39 cases, we determined the clinicopathological characteristics of the population. Of the 23 cases of IDC, we implemented the techniques Elisa, immunohistochemistry and in situ hybridization. To determine the serological profile, overexpression of onco-proteins EBNA-1, HER2, the mitotic index Ki67 and detection of the presence of the viral genome. The mean age is 57.40±4, SBR II predominates with 70%, pN+ (27%), RE+ (58%), RP+ (52%), HER2 (81%), Luminal A (34%), Luminal B (14%), HER2 (24%), and triple negative (28%). The serological profile of IgG VCA + in IgG EBNA-1 (87%), EBNA-1 P79 (82%) with a positive relationship between the IgG EBNA-1 and EBNA-1 P79 serology profile (p=0.001), HER2 (p=0.003) and with the molecular profile (p=0.051), EBNA-1 overexpression in (13%). The viral genome (EBER) is found in the tumors 43% representing an inverse relationship with the overexpression of Ki67 and a positive relationship with the overexpression of HER2. In our study we found an association with the presence of the EBV virus and the IDC studied.


Subject(s)
Breast Neoplasms/virology , Carcinoma, Ductal, Breast/virology , Epstein-Barr Virus Infections/diagnosis , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Herpesvirus 4, Human/isolation & purification , RNA, Viral/isolation & purification , Adult , Algeria/epidemiology , Breast Neoplasms/complications , Breast Neoplasms/epidemiology , Breast Neoplasms/genetics , Carcinoma, Ductal, Breast/complications , Carcinoma, Ductal, Breast/epidemiology , Carcinoma, Ductal, Breast/genetics , Enzyme-Linked Immunosorbent Assay , Epstein-Barr Virus Infections/epidemiology , Epstein-Barr Virus Nuclear Antigens/analysis , Epstein-Barr Virus Nuclear Antigens/metabolism , Female , Herpesvirus 4, Human/genetics , Herpesvirus 4, Human/metabolism , Humans , Immunohistochemistry , In Situ Hybridization , Molecular Typing/methods , RNA, Viral/genetics , RNA, Viral/metabolism
3.
Pathol Res Pract ; 213(7): 854-856, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28554750

ABSTRACT

BACKGROUND AND PURPOSE: Papillary thyroid carcinoma (PTC) is the most common thyroid cancer. EBV is one of the most important viruses related to different types of malignancies. This study investigated the relationship between EBV and papillary thyroid carcinoma. MATERIAL AND METHODS: In this study the presence of Epstein-Barr Nuclear Antigen 1 (EBNA1) gene in papillary thyroid carcinoma tissues were examined by nested-PCR method. Paraffin-embedded tissues (N=41) blocks of thyroid cancer were used. DNA was extracted from all samples and then samples were evaluated for the presence of EBV gene. RESULTS: In 41 samples, EBNA1 was detected in 65.8% of patients with papillary thyroid carcinoma which was significantly higher in younger ages. CONCLUSION: The significant presence of EBV genome in papillary thyroid carcinoma suggests that this virus may play a role in this cancer especially in younger ages. As a result, monitoring of patients with EBV latent infection for PTC can be very important.


Subject(s)
Carcinoma, Papillary/virology , DNA, Viral/genetics , Epstein-Barr Virus Infections/virology , Epstein-Barr Virus Nuclear Antigens/genetics , Herpesvirus 4, Human/genetics , Thyroid Neoplasms/virology , Adult , Carcinoma, Papillary/pathology , DNA, Viral/isolation & purification , Epstein-Barr Virus Infections/diagnosis , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Female , Herpesvirus 4, Human/isolation & purification , Humans , Iran , Male , Middle Aged , Polymerase Chain Reaction , Retrospective Studies , Thyroid Cancer, Papillary , Thyroid Neoplasms/pathology , Young Adult
4.
Rev Assoc Med Bras (1992) ; 60(3): 262-9, 2014.
Article in English | MEDLINE | ID: mdl-25004273

ABSTRACT

OBJECTIVE: The detection rate of Epstein-Barr virus (EBV) is higher in people living with human immunodeficiency virus (HIV). In an attempt to contribute to our epidemiological understanding of this coinfection and to investigate the activity of EBV in normal oral mucosa, we performed a cross-sectional study with HIV-positive patients. METHODS: Oral smears from 145 HIV-positive patients were collected between March 2010 and March 2011. Nested polymerase chain reaction (PCR) and reverse transcriptase-PCR (RT-PCR) were used to genotype EBV and to detect EBNA-2 expression, respectively. RESULTS: EBV DNA was detected in 48.3% of the study participants, of whom 32.85% were EBV-1 and 45.71% were EBV-2 carriers. Additionally, 14.28% were coinfected with both types. EBNA-2 mRNA was expressed in 45.7% of the EBV -positive samples, including 20.0% with EBV-1 only, 20.0% with EBV-2 only and 1.4% with both genotypes. Immune status affected the overall EBV infection, and EBV-2 positivity was significantly correlated with sexual lifestyle of the participants. EBV co-infection with both viral types was dependent upon HIV viral load and the activity of the EBNA-2 gene. CONCLUSION: We report a high prevalence of active EBV in the oral mucosa of asymptomatic HIV-seropositive individuals. This study addresses the need for monitoring and treatment of HIV-infected patients with EBV reactivation.


Subject(s)
DNA, Viral/analysis , Epstein-Barr Virus Infections/immunology , HIV Infections/immunology , Herpesvirus 4, Human/isolation & purification , Mouth Mucosa/virology , RNA, Viral/analysis , Adult , Aged , Brazil , CD4 Lymphocyte Count , Coinfection , Cross-Sectional Studies , Epstein-Barr Virus Infections/complications , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Female , Genotype , HIV Infections/complications , Herpesvirus 4, Human/immunology , Humans , Male , Middle Aged , Polymerase Chain Reaction
5.
Rev. Assoc. Med. Bras. (1992, Impr.) ; 60(3): 262-269, May-Jun/2014. tab
Article in English | LILACS | ID: lil-713057

ABSTRACT

Objective: the detection rate of Epstein-Barr virus (EBV) is higher in people living with human immunodeficiency virus (HIV). In an attempt to contribute to our epidemiological understanding of this coinfection and to investigate the activity of EBV in normal oral mucosa, we performed a cross-sectional study with HIV-positive patients. Methods: oral smears from 145 HIV-positive patients were collected between March 2010 and March 2011. Nested polymerase chain reaction (PCR) and reverse transcriptase-PCR (RT-PCR) were used to genotype EBV and to detect EBNA-2 expression, respectively. Results: EBV DNA was detected in 48.3% of the study participants, of whom 32.85% were EBV-1 and 45.71% were EBV-2 carriers. Additionally, 14.28% were coinfected with both types. EBNA-2 mRNA was expressed in 45.7% of the EBV -positive samples, including 20.0% with EBV-1 only, 20.0% with EBV-2 only and 1.4% with both genotypes. Immune status affected the overall EBV infection, and EBV-2 positivity was significantly correlated with sexual lifestyle of the participants. EBV co-infection with both viral types was dependent upon HIV viral load and the activity of the EBNA-2 gene. Conclusion: we report a high prevalence of active EBV in the oral mucosa of asymptomatic HIV-seropositive individuals. This study addresses the need for monitoring and treatment of HIV-infected patients with EBV reactivation. .


Objetivo: a taxa de detecção do vírus Epstein-Barr (EBV) é alta em pacientes vivendo com o vírus da imunodeficiência humana. Com o objetivo de contribuir para o entendimento epidemiológico e investigar a atividade do EBV na mucosa oral, foi realizado um estudo de coorte com pacientes HIV positivos. Métodos: esfregaços orais de 145 pacientes HIV positivos foram coletados entre março de 2010 e março de 2011. A reação de cadeia de polimerase (PCR) internalizada e a PCR reversa (RT-PCR) foram usadas para genotipar o EBV e detectar a expressão do EBNA-2, respectivamente. Resultados: o DNA do EBV foi detectado em 48,3% dos participantes, dos quais 32,85% eram portadores do EBV-1 e 45,71% de EBV-2. Adicionalmente, 14,28% eram co-infectados por ambos os tipos. O mRNA do gene EBNA-2 foi expresso em 45,7% das amostras positivas para EBV, incluindo 20% por EBV-1 somente, 20% por EBV-2 somente e 1,4% por ambos os genótipos. O estado imune afetou a infecção por EBV, e a positividade para EBV-2 foi significativamente correlacionada com o comportamento sexual dos participantes. A co-infecção por ambos os genótipos de EBV foi dependente da carga viral de HIV e da atividade do gene EBNA-2. Conclusão: registrou-se uma alta prevalência de EBV em atividade na mucosa oral de indivíduos assintomáticos soropositivos para HIV. O estudo focaliza a necessidade de monitoramento e tratamento de pacientes infectados por HIV com reativação pelo EBV. .


Subject(s)
Adult , Aged , Female , Humans , Male , Middle Aged , DNA, Viral/analysis , Epstein-Barr Virus Infections/immunology , HIV Infections/immunology , /isolation & purification , Mouth Mucosa/virology , RNA, Viral/analysis , Brazil , Coinfection , Cross-Sectional Studies , Epstein-Barr Virus Infections/complications , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Genotype , HIV Infections/complications , /immunology , Polymerase Chain Reaction
6.
Appl Microbiol Biotechnol ; 97(14): 6251-62, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23685476

ABSTRACT

Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus associated with the development of both lymphoid and epithelial tumors. EBNA1 is the only viral protein expressed in all EBV-associated malignancies and plays important roles in EBV latency. Thus, EBNA1 is thought to be a promising antigen for immunotherapy of all EBV-associated malignancies. This study was undertaken to produce recombinant EBNA1 protein in Pichia pastoris and evaluate its immunogenicity. The truncated EBNA1 (E1ΔGA, codons 390-641) was expressed as a secretory protein with an N-terminal histidine tag in the methylotrophic yeast P. pastoris and purified by Ni-NTA affinity chromatography. The purified proteins were then used as antigens to immunize BALB/c mice for production of polyclonal antibodies. Western blot analysis showed that the polyclonal antibodies specifically recognized the EBNA1 protein in B95-8 cell lysates. The recombinant E1ΔGA also induced strong lymphoproliferative and Th1 cytokine responses in mice. Furthermore, mice immunized with E1ΔGA developed CD4+ and CD8+ T cell responses. These findings showed that the yeast-expressed E1ΔGA retained good immunogenicity and might be a promising vaccine candidate against EBV-associated malignancies.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/immunology , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Gene Expression , Pichia/genetics , Animals , Antibodies, Viral/immunology , Cytokines/immunology , Epstein-Barr Virus Infections/immunology , Epstein-Barr Virus Infections/virology , Epstein-Barr Virus Nuclear Antigens/genetics , Female , Herpesvirus 4, Human/genetics , Herpesvirus 4, Human/immunology , Humans , Immunization , Mice , Mice, Inbred BALB C , Pichia/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/isolation & purification , Th1 Cells/immunology
7.
Protein Expr Purif ; 86(1): 7-11, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22944205

ABSTRACT

Epstein-Barr nuclear antigen 1 (EBNA1) is the essential Epstein-Barr virus (EBV) protein at the interface between the EBV genome and the host chromatin. It is EBNA1's task to guarantee replication and segregation of the multicopy closed circular viral genome in infected cells. While EBNA1's functions are relatively well understood, little is known about the molecular mechanisms of EBNA1 mediating chromatin tethering and DNA replication. To characterize those, purified EBNA1 would be a very useful tool in many different biochemical assays. For long, it was not possible to overexpress sufficient quantities of EBNA1 in Escherichia coli (E. coli) due to its rare codon usage, especially in the N-terminal part of the protein. Recently, some groups succeeded in purifying EBNA1 from bacteria using advanced inducible E. coli cells [1-3]. However, all purification procedures ended in a His-tagged version of EBNA1, which might influence EBNA1's function in biological assays. Therefore, we inserted a tobacco etch virus (TEV)-cleavage site between the N-terminal His-tag and the following open reading frame of EBNA1. Using sequential Ni-NTA and gel filtration columns and TEV protease-mediated cleavage upon autoinduction, we were able to purify functional EBNA1 protein featuring just a single additional, artificial N-terminal glycine residue. Following our simple and fast purification scheme we were able to synthesize 2mg of highly pure EBNA1 protein per liter culture.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/isolation & purification , Escherichia coli/metabolism , Herpesvirus 4, Human/metabolism , Chromatin/metabolism , Chromatography, Gel/methods , Cloning, Molecular , DNA Replication , Electrophoresis, Polyacrylamide Gel , Electrophoretic Mobility Shift Assay , Endopeptidases/metabolism , Epstein-Barr Virus Nuclear Antigens/biosynthesis , Epstein-Barr Virus Nuclear Antigens/genetics , Escherichia coli/genetics , Genetic Vectors/genetics , Genetic Vectors/metabolism , Glycine/metabolism , Herpesvirus 4, Human/genetics , Open Reading Frames , Proteolysis
8.
J Biomol Screen ; 15(9): 1107-15, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20930215

ABSTRACT

Latent infection with Epstein-Barr virus (EBV) is a carcinogenic cofactor in several lymphoid and epithelial cell malignancies. At present, there are no small-molecule inhibitors that specifically target EBV latent infection or latency-associated oncoproteins. EBNA1 is an EBV-encoded sequence-specific DNA binding protein that is consistently expressed in EBV-associated tumors and required for stable maintenance of the viral genome in proliferating cells. EBNA1 is also thought to provide cell survival function in latently infected cells. In this work, the authors describe the development of a biochemical high-throughput screening (HTS) method using a homogeneous fluorescence polarization (FP) assay monitoring EBNA1 binding to its cognate DNA binding site. An FP-based counterscreen was developed using another EBV-encoded DNA binding protein, Zta, and its cognate DNA binding site. The authors demonstrate that EBNA1 binding to a fluorescent-labeled DNA probe provides a robust assay with a Z factor consistently greater than 0.6. A pilot screen of a small-molecule library of ~14,000 compounds identified 3 structurally related molecules that selectively inhibit EBNA1 but not Zta. All 3 compounds had activity in a cell-based assay specific for the disruption of EBNA1 transcription repression function. One of the compounds was effective in reducing EBV genome copy number in Raji Burkitt lymphoma cells. These experiments provide a proof of concept that small-molecule inhibitors of EBNA1 can be identified by biochemical HTS of compound libraries. Further screening in conjunction with medicinal chemistry optimization may provide a selective inhibitor of EBNA1 and EBV latent infection.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/metabolism , High-Throughput Screening Assays/methods , Small Molecule Libraries/analysis , Small Molecule Libraries/pharmacology , Cell Line, Tumor , DNA/metabolism , Electrophoretic Mobility Shift Assay , Epstein-Barr Virus Nuclear Antigens/genetics , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Fluorescence Polarization , Gene Dosage/drug effects , Herpesvirus 4, Human/drug effects , Herpesvirus 4, Human/genetics , Humans , Inhibitory Concentration 50 , Plasmids/genetics , Protein Binding/drug effects , Trans-Activators/isolation & purification , Trans-Activators/metabolism , Transcription, Genetic/drug effects
9.
Protein Expr Purif ; 67(1): 35-40, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19393319

ABSTRACT

Epstein-Barr virus nuclear antigen 1 (EBNA1) is a viral protein required for stable replication and segregation of DNA episomes containing the Epstein-Barr virus (EBV) origin of replication, OriP. Overproduction of EBNA1 protein in Escherichia coli has previously been shown to be difficult due to the large number of codons in EBNA1 gene that are infrequently used in E. coli. Here we changed the 26 rare codons that are found among the first 78 codons of EBNA1 gene, and replaced them with codons that encode the same amino-acids but are abundant in E. coli. This led to a significant improvement of EBNA1 expression in a standard E. coli strain. Partial EBNA1 polypeptides of 11.5-16 kDa extending from the N-terminus to the second arginine and glycine-rich region were extremely abundant in the extract, however, resulting in a second limitation of the level of EBNA1 expression. EBNA1 was expressed as a fusion with a C-terminal six-histidine tag in order to get rid of the short polypeptides by Ni-NTA affinity purification, and salt conditions were used that allowed us to extract and purify EBNA1 without resorting to protein denaturing reagents. The purified protein was used in DNA-binding experiments with DNA fragments containing specific EBNA1 sites. The E. coli-expressed protein formed specific DNA-protein complexes that could be analyzed in polyacrylamide gels without showing the aggregation, or linking, phenomenon that is usually observed with EBNA1 expressed in eukaryotic cells. EBNA1 protein expressed in E. coli should therefore prove useful to further study the biochemical properties of this crucial Epstein-Barr virus protein.


Subject(s)
DNA/metabolism , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Epstein-Barr Virus Nuclear Antigens/metabolism , Escherichia coli/genetics , Herpesvirus 4, Human/genetics , Cloning, Molecular , Codon/genetics , Electrophoresis, Polyacrylamide Gel , Epstein-Barr Virus Nuclear Antigens/genetics , Protein Denaturation , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism
10.
PLoS One ; 4(2): e4614, 2009.
Article in English | MEDLINE | ID: mdl-19242546

ABSTRACT

Epstein-Barr virus (EBV) nuclear antigen 1 (EBNA1) was overexpressed and purified from Escherichia coli. Mouse monoclonal antibodies (mAbs) were prepared that react with EBNA1. Eleven high affinity mAbs were recovered. Nine mAbs are isotype IgG (all subisotype IgG(1)) and two mAbs are isotype IgM. All mAbs react strongly with EBNA1 in an ELISA assay while only one mAb (designated 1EB6) fails to react in a Western blot assay. The epitopes for these mAbs were mapped to seven different regions, providing good coverage of the entire EBNA1 protein. The mAbs had differing affinity for an EBNA1/DNA complex with four mAbs able to supershift the complex completely. All mAbs can immunoprecipitate EBNA1 from E. coli overexpressing EBNA1. A modified ELISA assay, termed ELISA-elution assay, was used to screen for mAbs that release EBNA1 in the presence of a low molecular weight polyhydroxylated compound (polyol) and a nonchaotropic salt. MAbs with this property, termed polyol-responsive (PR)-mAbs, allow gentle elution of labile proteins and protein complexes. Four mAbs are polyol-responsive with two showing usefulness in gentle immunoaffinity chromatography. Purification with these PR-mAbs may be useful in purifying EBNA1 complexes and elucidating EBNA1-associated proteins. This panel of anti-EBNA1 mAbs will advance the study of EBV by providing new tools to detect and purify EBNA1.


Subject(s)
Antibodies, Monoclonal/immunology , Chromatography, Affinity/methods , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Animals , Antigens, Viral/immunology , Epstein-Barr Virus Nuclear Antigens/immunology , Herpesvirus 4, Human , Immunoassay , Immunoprecipitation , Mice
11.
Pediatr Dev Pathol ; 12(3): 195-9, 2009.
Article in English | MEDLINE | ID: mdl-18442302

ABSTRACT

Detection of Epstein-Barr virus (EBV) may be achieved by various methods, including EBV-encoded RNA (EBER) in-situ hybridization (ISH) and immunohistochemistry (IHC) for latent membrane protein (LMP-1). We compared novel automated ISH and IHC techniques in pediatric lymphoproliferative disorders with results obtained by manual ISH. Thirty-seven pediatric cases previously studied by manual EBER ISH (including 18 EBER-positive, 15 EBER-negative, and 4 EBER-equivocal cases) were used for the study. Automated EBER ISH and automated LMP-1 IHC were performed using the BondMax autostainer and prediluted EBER probe and EBV cell surface 1 to 4 at 1:50 dilution, respectively. Results of each of the automated techniques for EBV detection were compared with results by manual EBER ISH. Compared with manual EBER ISH as the gold standard, automated ISH had a sensitivity and specificity of 94% and 69%, respectively, accuracy of 83%, positive predictive value (PPV) of 79%, and negative predictive value (NPV) of 90%. Automated IHC had a sensitivity of 44%, specificity of 93%, accuracy of 67%, PPV of 88%, and NPV of 59%. Automated ISH and IHC correlated significantly (P < 0.045). Automated ISH is useful for diagnosis of EBV-related pediatric neoplasms, being easy to perform and interpret and requiring only the technologist's time to set up and having a high sensitivity and NPV The automated IHC protocol is of too low sensitivity for routine use, although results show high specificity and PPV.


Subject(s)
Epstein-Barr Virus Infections/diagnosis , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Herpesvirus 4, Human/isolation & purification , Immunohistochemistry/methods , In Situ Hybridization/methods , Lymphoproliferative Disorders/diagnosis , Child , Epstein-Barr Virus Infections/virology , Epstein-Barr Virus Nuclear Antigens/genetics , Herpesvirus 4, Human/genetics , Humans , Immunohistochemistry/economics , In Situ Hybridization/economics , Lymphoproliferative Disorders/virology , Organ Transplantation/adverse effects , Postoperative Complications , Predictive Value of Tests , RNA, Viral/isolation & purification , RNA, Viral/metabolism , Reproducibility of Results , Viral Matrix Proteins/genetics
12.
Protein Expr Purif ; 63(2): 128-33, 2009 Feb.
Article in English | MEDLINE | ID: mdl-18848996

ABSTRACT

The protein-DNA and protein-protein interactions of Epstein-Barr virus nuclear antigen 1 (EBNA1) are known to play an important role in the many functions of this viral protein. Large quantities of pure EBNA1 protein would be useful in biochemical assays to elucidate such interactions. In particular, the crystal structure of the full-length protein would be important to show possible regions of interaction and/or post-translational modification. Recently, we described a novel approach to overexpress and purify EBNA1 from Escherichia coli; however, it is not ideal for large-scale production of EBNA1. We were able to optimize this protocol by (1) adding a polyethyleneimine precipitation step prior to Ni-NTA chromatography to reduce complexity of the sample and remove nucleic acid, (2) optimizing the Ni-NTA gradient to further separate EBNA1 from impurities, and (3) concluding with a MonoS cation-exchange chromatography step to further purify and concentrate EBNA1. We were able to recover 10-mg quantities of pure EBNA1 protein.


Subject(s)
Chromatography, Gel/methods , Chromatography, Ion Exchange/methods , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Herpesvirus 4, Human/metabolism , Chemical Precipitation , Humans , Plasmids/isolation & purification
13.
Przegl Epidemiol ; 60(1): 87-92, 2006.
Article in Polish | MEDLINE | ID: mdl-16758744

ABSTRACT

OBJECTIVE: Assessment of frequency and clinical course of EBV infection in patients that underwent non-manipulated allo-HCT from matched-related donors. METHODS: Active EBV infection was confirmed based on the presence of anti-EA antibodies (ELISA) and/or viral DNA (nPCR) isolated from peripheral leukocytes. For positive DNA-isolations semi-quantitative analysis were done. Patients were examined repeatedly, the time of monitoring was approximately 6 +/- 5 months. RESULTS: Active EBV infection was confirmed in 27 among 56 examined allo-HCT recipients. Primary infection was detected in 5 patients, in the remaining patients it was probably the result of virus reactivation. In most cases EBV-load was approximately 200 copies per 1 million of leukocytes, 1 patient with lymphoproliferative disorder (PTLD) had 2 million copies. EBV infection was asymptomatic in most cases (17), in 7 cases aminotransferase levels were insignificantly increased, in 2--diarrhea was observed and in 4 patients GvHD was intensified. CONCLUSIONS: In recipients without risk of PTLD, permanent monitoring of the EBV-load has no clinical justification.


Subject(s)
Epstein-Barr Virus Infections/diagnosis , Epstein-Barr Virus Infections/virology , Hematopoietic Stem Cell Transplantation/adverse effects , Herpesvirus 4, Human/isolation & purification , Adult , DNA, Viral/blood , Enzyme-Linked Immunosorbent Assay , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Female , Humans , Male , Middle Aged , Transplantation, Homologous , Viral Load
14.
Protein Expr Purif ; 47(2): 434-40, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16403648

ABSTRACT

Epstein-Barr virus nuclear antigen 1 (EBNA-1) is a multi-functional protein of the Epstein-Barr virus (EBV). Due to its low abundance in EBV-transformed cells, overproduction in a foreign host is preferred to obtain purified EBNA-1 protein. The EBNA-1 gene possesses a large number of Escherichia coli rare codons (23%). By using E. coli BL21(DE3)Rosetta2 cells that augment the low-abundance tRNA genes, the expression level of EBNA-1 in E. coli was greatly enhanced. EBNA-1 was then purified by applying the whole cell extract soluble fraction to a Ni-NTA Superflow column and eluting with an imidazole gradient. The improved overexpression in E. coli followed by a one-step Ni-NTA purification resulted in a sufficient amount of pure EBNA-1 protein to test DNA binding activity, and prepare and test EBNA-1-specific monoclonal antibodies (mAbs).


Subject(s)
Epstein-Barr Virus Nuclear Antigens/biosynthesis , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Viral Regulatory and Accessory Proteins/biosynthesis , Viral Regulatory and Accessory Proteins/isolation & purification , Chromatography, Affinity , Epstein-Barr Virus Nuclear Antigens/genetics , Escherichia coli/genetics , Recombinant Proteins/genetics , Viral Regulatory and Accessory Proteins/genetics
15.
Mol Cell ; 9(3): 493-503, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11931758

ABSTRACT

Episomal maintenance and DNA replication of EBV origin of plasmid replication (OriP) plasmid maintenance is mediated by the viral encoded origin binding protein, EBNA1, and unknown cellular factors. We found that telomeric repeat binding factor 2 (TRF2), TRF2-interacting protein hRap1, and the telomere-associated poly(ADP-ribose) polymerase (Tankyrase) bound to the dyad symmetry (DS) element of OriP in an EBNA1-dependent manner. TRF2 bound cooperatively with EBNA1 to the three nonamer sites (TTAGGGTTA), which resemble telomeric repeats. Mutagenesis of the nonamers reduced plasmid maintenance function and increased plasmid sensitivity to genotoxic stress. DS affinity-purified proteins possessed poly(ADP-ribose) polymerase (PARP) activity, and EBNA1 was subject to NAD-dependent posttranslational modification in vitro. OriP plasmid maintenance was sensitive to changes in cellular PARP/Tankyrase activity. These findings imply that telomere-associated proteins regulate OriP plasmid maintenance by PAR-dependent modifications.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/metabolism , Herpesvirus 4, Human/genetics , Plasmids/genetics , Replication Origin/physiology , Tankyrases , Telomere-Binding Proteins , Chromatography, Affinity/methods , DNA/genetics , DNA/metabolism , DNA Replication/physiology , DNA-Binding Proteins/isolation & purification , DNA-Binding Proteins/metabolism , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Herpesvirus 4, Human/metabolism , Humans , Plasmids/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Protein Binding , Repetitive Sequences, Amino Acid , Shelterin Complex , Telomere/genetics , Telomere/metabolism , Telomeric Repeat Binding Protein 2 , Tumor Cells, Cultured
16.
J Clin Oncol ; 19(10): 2607-15, 2001 May 15.
Article in English | MEDLINE | ID: mdl-11352952

ABSTRACT

PURPOSE: Nasopharyngeal carcinoma (NPC) has been proved to be an Epstein-Barr virus (EBV)-associated cancer. By use of nested polymerase chain reactions (PCRs), we examined whether the presence of EBV DNA in the peripheral-blood cells (PBC) can serve as a prognostic indicator for NPC. PATIENTS AND METHODS: Peripheral blood from 124 patients with NPC who had no evidence of distant metastasis and 114 healthy volunteers with serologically positive findings for EBV infection was collected prospectively. Plasma and erythrocytes were separated. DNA was extracted from PBCs and analyzed by a nested PCR using primers specific to Epstein-Barr virus nuclear antigen 1 (EBNA-1). All patients were treated by radiotherapy with or without chemotherapy. Clinical parameters and status of EBNA-1 in PBCs were used for survival analysis using the Kaplan-Meier method and the Cox proportional hazards model. RESULTS: Positive rates of EBNA-1 DNA in PBCs of NPC patients and healthy volunteers are 71% and 14%, respectively (P =.001). No significant difference was observed with regard to the clinical characteristics of patients who were EBNA-1-positive (n = 88) and those who were EBNA-1-negative (n = 36). After a median follow-up period of 38 months (range, 24 to 56 months), 29 of 88 EBNA-1-positive patients and only one of 36 EBNA-1-negative patients developed distant metastases (P =.00015). Kaplan-Meier estimates of overall survival (P =.0010), metastasis-free survival (P =.0004), and progression-free survival (P =.0004) were significantly lower for the patients in the EBNA-1-positive group than for those in the EBNA-1-negative group. Multivariate Cox analysis confirmed the same results. CONCLUSION: The presence of EBNA-1 DNA in PBCs is a novel, important risk factor for patients with NPC that indicates a significantly higher risk of developing distant metastasis as well as a lower survival rate.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/therapeutic use , DNA, Viral/blood , Epstein-Barr Virus Infections/complications , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Nasopharyngeal Neoplasms/mortality , Nasopharyngeal Neoplasms/virology , Adult , Aged , Case-Control Studies , Cisplatin/administration & dosage , Combined Modality Therapy , Epstein-Barr Virus Infections/blood , Female , Fluorouracil/administration & dosage , Humans , Male , Middle Aged , Nasopharyngeal Neoplasms/drug therapy , Nasopharyngeal Neoplasms/pathology , Nasopharyngeal Neoplasms/radiotherapy , Neoplasm Metastasis , Polymerase Chain Reaction , Proportional Hazards Models , Survival Analysis
17.
Protein Expr Purif ; 20(2): 324-33, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11049756

ABSTRACT

Epstein-Barr virus (EBV)-encoded nuclear antigen 1 (EBNA1) is expressed in all EBV-associated malignancies and is essential for EBV-genome maintenance. Antibodies to EBNA1 are abundantly detected in serum of most EBV carriers but EBNA1 escapes recognition by effector T-lymphocytes. To further study the functional and immunological characteristics of EBNA1 it is important to have sufficient quantities of purified EBNA1 available. This paper describes a simple, reproducible method for the production and purification of EBV-encoded EBNA1 expressed in insect cells (bEBNA1). For quantification of EBNA1 expression levels in cell lines and for monitoring bEBNA1 purification and overall yields we developed a quantitative and EBNA1-specific capture ELISA. We observed that EBV-positive cell lines express EBNA1 at different levels, with the B cell lymphoblastoid cell line X50/7 having the highest production. However, much larger quantities (380-fold) were obtained by expressing bEBNA1 in recombinant-baculovirus-infected Sf9 insect cells. Scaling-up experiments revealed that bEBNA1 expression kinetics and protein stability are identical in 1-liter stirred bioreactors when compared to expression in stationary culture flasks. Optimal expression was reached after 72 h following inoculation at 1 pfu/cell, when insect cell viability was about 50%. For purification the nuclear fraction containing most of the bEBNA1 (>95%) was isolated. Solubilized bEBNA1 was purified by a one-step oriP DNA-Sepharose affinity purification procedure, using biotinylated PCR-amplified family of repeats (FR)-domain products immobilized onto streptavidin agarose. A >200-fold specific enrichment was reached and yields of bEBNA1 with an estimated purity of >95%.


Subject(s)
Baculoviridae/genetics , Epstein-Barr Virus Nuclear Antigens/biosynthesis , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Animals , Bioreactors , Cell Line , Cell Survival , Chromatography, Affinity/methods , Culture Techniques/methods , DNA/metabolism , Enzyme-Linked Immunosorbent Assay/methods , Epstein-Barr Virus Nuclear Antigens/genetics , Epstein-Barr Virus Nuclear Antigens/immunology , Immunoblotting , Protein Binding , Recombinant Proteins/analysis , Recombinant Proteins/biosynthesis , Recombinant Proteins/immunology , Recombinant Proteins/isolation & purification , Sensitivity and Specificity , Spodoptera/cytology , Spodoptera/virology
18.
Jpn J Infect Dis ; 52(3): 110-2, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10507989

ABSTRACT

Epstein-Barr virus (EBV) infection is found in 7% of Japanese gastric carcinoma. Our strategy is to establish the EBV infected epithelial cell lines from EBV infected gastric carcinomas and to characterize the cell lines on the bases of cellular and molecular biology to define the etiological role of EBV. We have characterized two EBV positive cell lines, GT38 and GT39 from gastric tissues. The both cell lines were EBV latency type III and produced the virus spontaneously. The character of tumor cells was demonstrated by the colony formation in soft agar and the tumorigenesis in severe combined immunodeficient mice.


Subject(s)
Epstein-Barr Virus Infections/complications , Herpesvirus 4, Human/immunology , Stomach Neoplasms/virology , Animals , Epithelial Cells/virology , Epstein-Barr Virus Nuclear Antigens/isolation & purification , Humans , Male , Mice , Mice, SCID , Tumor Cells, Cultured/virology
19.
Pathol Res Pract ; 195(6): 407-12, 1999.
Article in English | MEDLINE | ID: mdl-10399181

ABSTRACT

Epstein-Barr virus (EBV) is known in association with lymphoid and epithelial lesion. Because the salivary gland is an organ close to the oropharynx, it has a higher incidence of EBV infection and is a possible route of EBV infection. Formalin-fixed, paraffin embedded tissue sections of 87 cases of salivary gland diseases were used for the study of EBV with PCR, in situ PCR for EBNA-1 (EBV nuclear antigen-1), and immunohistochemistry for LMP-1 (latent membrane protein-1). EBV was detected in 12 cases (13.8%): 7 of nonspecific chronic sialadenitis (21.2%), 4 of Warthin's tumors (30.8%), and one lymphoepithelial carcinoma. EBNA-1 was negative in all the other lesions. EBV DNA was detected in the nucleus of epithelial cells and the surrounding lymphocytes. LMP-1 positivity was found in the cytoplasm of epithelial cells. The results of the present study showed that EBV is implicated in some of the inflammatory and neoplastic lesions of the salivary gland in which the lymphocytes are abundant. However, the pathogenesis and mechanism of immortalization and tumorigenesis of the epithelial cells in the salivary glands remain to be determined.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/isolation & purification , Salivary Gland Diseases/virology , Salivary Gland Neoplasms/virology , Humans , Immunohistochemistry , Polymerase Chain Reaction , Viral Matrix Proteins/isolation & purification
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