Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 122
Filter
1.
BMC Microbiol ; 21(1): 319, 2021 11 19.
Article in English | MEDLINE | ID: mdl-34798816

ABSTRACT

BACKGROUND: Tuberculosis (TB) remains an important public health problem since it is the major cause of elevated morbidity and mortality globally. Previous works have shown that Mycobacterium tuberculosis (Mtb); the prime causative agent of the deadly disease has dormancy survival regulator (DosR) regulon, a two-component regulatory system which controls the transcription of more than 50 genes. However, the structure and detailed functions of these DosR regulated genes are largely undetermined. Out of many DosR regulon genes, Rv3131 gets up regulated in hypoxic conditions and was believed to encode for a nitroreductase flavoprotein. The utilization of mycobacteria-specific model systems has greatly added to our understanding of the molecular mechanisms involved in the life cycle and pathogenesis of Mtb. RESULTS: In this study the non-pathogenic mycobacterial model organism Mycobacterium smegmatis (Msmeg) was used to reveal the structure and function of MSMEG_3955; which is a homologue of Rv3131 from Mtb. Using chromatography and spectroscopy techniques it was revealed that cofactor flavin mononucleotide (FMN) was bound to flavoprotein MSMEG_3955. Consistent with the homology modelling predictions, Circular Dichroism (CD) analysis indicated that the MSMEG_3955 is composed of 39.3% α-helix and 24.9% ß-pleated sheets. In contrast to the current notions, the enzymatic assays performed in the present study revealed that MSMEG_3955 was not capable of reducing nitro substrates but showed NADPH dependent FMN oxidoreductase activity. Also, gel permeation chromatography, dynamic light scattering and native acidic gels showed that MSMEG_3955 exists as a homotrimer. Furthermore, the presence of NADPH dependent FMN oxidoreductase and homotrimeric existence could be an alternative function of the protein to help the bacteria survive in dormant state or may be involved in other biochemical pathways. CONCLUSION: MSMEG_3955 is a FMN bound flavoprotein, which exits as a trimer under in vitro conditions. There is no disulphide linkages in between the three protomers of the homotrimer MSMEG_3955. It has a NADPH dependent FMN oxidoreductase activity.


Subject(s)
Bacterial Proteins/metabolism , FMN Reductase/metabolism , Mycobacterium smegmatis/enzymology , NADH, NADPH Oxidoreductases/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Dimerization , FMN Reductase/chemistry , FMN Reductase/genetics , Flavin Mononucleotide/metabolism , Mycobacterium smegmatis/chemistry , Mycobacterium smegmatis/genetics , Mycobacterium smegmatis/metabolism , NAD/metabolism , NADH, NADPH Oxidoreductases/chemistry , NADH, NADPH Oxidoreductases/genetics , NADP/metabolism
2.
Arch Biochem Biophys ; 704: 108874, 2021 06 15.
Article in English | MEDLINE | ID: mdl-33862020

ABSTRACT

The short-chain flavin reductases BorF and AbeF reduce FAD to FADH2, which is then used by flavin-dependent halogenases (BorH and AbeH respectively) to regioselectively chlorinate tryptophan in the biosynthesis of indolotryptoline natural products. Recombinant AbeF and BorF were overexpressed and purified as homodimers from E. coli, and copurified with substoichiometric amounts of FAD, which could be easily removed. AbeF and BorF can reduce FAD, FMN, and riboflavin in vitro and are selective for NADH over NADPH. Initial velocity studies in the presence and absence of inhibitors showed that BorF proceeds by a sequential ordered kinetic mechanism in which FAD binds first, while AbeF follows a random-ordered sequence of substrate binding. Fluorescence quenching experiments verified that NADH does not bind BorF in the absence of FAD, and that both AbeF and BorF bind FAD with higher affinity than FADH2. pH-rate profiles of BorF and AbeF were bell-shaped with maximum kcat at pH 7.5, and site-directed mutagenesis of BorF implicated His160 and Arg38 as contributing to the catalytic activity and the pH dependence.


Subject(s)
Escherichia coli Proteins/chemistry , Escherichia coli/enzymology , FMN Reductase/chemistry , Flavin Mononucleotide/chemistry , Flavin-Adenine Dinucleotide/chemistry , Riboflavin/chemistry , Kinetics
3.
J Biol Inorg Chem ; 26(2-3): 313-326, 2021 05.
Article in English | MEDLINE | ID: mdl-33559753

ABSTRACT

Iron is a fundamental element for virtually all forms of life. Despite its abundance, its bioavailability is limited, and thus, microbes developed siderophores, small molecules, which are synthesized inside the cell and then released outside for iron scavenging. Once inside the cell, iron removal does not occur spontaneously, instead this process is mediated by siderophore-interacting proteins (SIP) and/or by ferric-siderophore reductases (FSR). In the past two decades, representatives of the SIP subfamily have been structurally and biochemically characterized; however, the same was not achieved for the FSR subfamily. Here, we initiate the structural and functional characterization of FhuF, the first and only FSR ever isolated. FhuF is a globular monomeric protein mainly composed by α-helices sheltering internal cavities in a fold resembling the "palm" domain found in siderophore biosynthetic enzymes. Paramagnetic NMR spectroscopy revealed that the core of the cluster has electronic properties in line with those of previously characterized 2Fe-2S ferredoxins and differences appear to be confined to the coordination of Fe(III) in the reduced protein. In particular, the two cysteines coordinating this iron appear to have substantially different bond strengths. In similarity with the proteins from the SIP subfamily, FhuF binds both the iron-loaded and the apo forms of ferrichrome in the micromolar range and cyclic voltammetry reveals the presence of redox-Bohr effect, which broadens the range of ferric-siderophore substrates that can be thermodynamically accessible for reduction. This study suggests that despite the structural differences between FSR and SIP proteins, mechanistic similarities exist between the two classes of proteins.


Subject(s)
Escherichia coli/enzymology , FMN Reductase/chemistry , FMN Reductase/metabolism , Cysteine/metabolism , Models, Molecular , Oxidation-Reduction , Protein Domains
4.
Int J Mol Sci ; 22(1)2020 Dec 24.
Article in English | MEDLINE | ID: mdl-33374479

ABSTRACT

Sorbus commixta is a valuable hardwood plant with a high economical value for its medicinal and ornamental qualities. The aim of this work was to investigate the effects of the iron (Fe) source and medium pH on the growth and development of S. commixta in vitro. The Fe sources used, including non-chelated iron sulfate (FeSO4), iron ethylenediaminetetraacetic acid (Fe-EDTA), and iron diethylenetriaminepentaacetic acid (Fe-DTPA), were supplemented to the Multipurpose medium with a final Fe concentration of 2.78 mg·L-1. The medium without any supplementary Fe was used as the control. The pH of the agar-solidified medium was adjusted to either 4.70, 5.70, or 6.70. The experiment was conducted in a culture room for six weeks with 25 °C day and night temperatures, and a 16-h photoperiod with a light intensity of 50 mmol·m-2·s-1 photosynthetic photon flux density (PPFD). Both the Fe source and pH affected the growth and development of the micropropagated plants in vitro. The leaves were greener in the pH 4.70 and 5.70 treatments. The tissue Fe content decreased with the increase of the medium pH. The leaf chlorophyll content was similar between plants treated with FeSO4 and those with Fe-EDTA. The numbers of the shoots and roots of plantlets treated with FeSO4 were 2.5 and 2 times greater than those of the control, respectively. The fresh and dry weights of the shoot and the root were the greatest for plants treated with Fe-EDTA combined with pH 5.70. The calcium, magnesium, and manganese contents in the plantlets increased in the pH 5.70 treatments regardless of the Fe source. Supplementary Fe decreased the activity of ferric chelate reductase. Overall, although the plantlets absorbed more Fe at pH 4.70, Fe-EDTA combined with pH 5.70 was found to be the best for the growth and development of S. commixta in vitro.


Subject(s)
Culture Media/pharmacology , Ferric Compounds/chemistry , Ferrous Compounds/chemistry , Pentetic Acid/analogs & derivatives , Sorbus/growth & development , Antioxidants/chemistry , Chlorophyll/chemistry , Edetic Acid/chemistry , FMN Reductase/chemistry , Hydrogen-Ion Concentration , Iron , Pentetic Acid/chemistry , Photosynthesis , Plant Leaves/metabolism , Plant Roots/metabolism , Plant Stomata/metabolism , Sorbus/metabolism , Time Factors
5.
Appl Environ Microbiol ; 86(20)2020 10 01.
Article in English | MEDLINE | ID: mdl-32801174

ABSTRACT

Cr(VI) is mutagenic and teratogenic and considered an environmental pollutant of increasing concern. The use of microbial enzymes that convert this ion into its less toxic reduced insoluble form, Cr(III), represents a valuable bioremediation strategy. In this study, we examined the Bacillus subtilis YhdA enzyme, which belongs to the family of NADPH-dependent flavin mononucleotide oxide reductases and possesses azo-reductase activity as a factor that upon overexpression confers protection on B. subtilis from the cytotoxic effects promoted by Cr(VI) and counteracts the mutagenic effects of the reactive oxygen species (ROS)-promoted lesion 8-OxoG. Further, our in vitro assays unveiled catalytic and biochemical properties of biotechnological relevance in YhdA; a pure recombinant His10-YhdA protein efficiently catalyzed the reduction of Cr(VI) employing NADPH as a cofactor. The activity of the pure oxidoreductase YhdA was optimal at 30°C and at pH 7.5 and displayed Km and Vmax values of 7.26 mM and 26.8 µmol·min-1·mg-1 for Cr(VI), respectively. Therefore, YhdA can be used for efficient bioremediation of Cr(VI) and counteracts the cytotoxic and genotoxic effects of oxygen radicals induced by intracellular factors and those generated during reduction of hexavalent chromium.IMPORTANCE Here, we report that the bacterial flavin mononucleotide/NADPH-dependent oxidoreductase YhdA, widely distributed among Gram-positive bacilli, conferred protection to cells from the cytotoxic effects of Cr(VI) and prevented the hypermutagenesis exhibited by a MutT/MutM/MutY-deficient strain. Additionally, a purified recombinant His10-YhdA protein displayed a strong NADPH-dependent chromate reductase activity. Therefore, we postulate that in bacterial cells, YhdA counteracts the cytotoxic and genotoxic effects of intracellular and extracellular inducers of oxygen radicals, including those caused by hexavalent chromium.


Subject(s)
Bacillus subtilis/drug effects , Bacillus subtilis/physiology , Bacterial Proteins/metabolism , Chromium/toxicity , FMN Reductase/metabolism , Bacillus subtilis/enzymology , Bacillus subtilis/genetics , Bacterial Proteins/chemistry , FMN Reductase/chemistry
6.
Exp Parasitol ; 217: 107962, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32763249

ABSTRACT

Trypanosoma cruzi is a parasitic protozoan that infects various species of domestic and wild animals, triatomine bugs and humans. It is the etiological agent of American trypanosomiasis, also known as Chagas Disease, which affects about 17 million people in Latin America and is emerging elsewhere in the world. Iron (Fe) is a crucial micronutrient for almost all cells, acting as a cofactor for several metabolic enzymes. T. cruzi has a high requirement for Fe, using heminic and non-heminic Fe for growth and differentiation. Fe occurs in the oxidized (Fe3+) form in aerobic environments and needs to be reduced to Fe2+ before it enters cells. Fe-reductase, located in the plasma membranes of some organisms, catalyzes the Fe3+⇒ Fe2+ conversion. In the present study we found an amino acid sequence in silico that allowed us to identify a novel 35 kDa protein in T. cruzi with two transmembrane domains in the C-terminal region containing His residues that are conserved in the Ferric Reductase Domain Superfamily and are required for catalyzing Fe3+ reduction. Accordingly, we named this protein TcFR. Intact epimastigotes from the T. cruzi DM28c strain reduced the artificial Fe3+-containing substrate potassium ferricyanide in a cell density-dependent manner, following Michaelis-Menten kinetics. The TcFR activity was more than eightfold higher in a plasma membrane-enriched fraction than in whole homogenates, and this increase was consistent with the intensity of the 35 kDa band on Western blotting images obtained using anti-NOX5 raised against the human antigen. Immunofluorescence experiments demonstrated TcFR on the parasite surface. That TcFR is part of a catalytic complex allowing T. cruzi to take up Fe from the medium was confirmed by experiments in which DM28c was assayed after culturing in Fe-depleted medium: (i) proliferation during the stationary growth phase was five times slower; (ii) the relative expression of TcFR (qPCR) was 50% greater; (iii) intact cells had 120% higher Fe-reductase activity. This ensemble of results indicates that TcFR is a conserved enzyme in T. cruzi, and its catalytic properties are modulated in order to respond to external Fe fluctuations.


Subject(s)
FMN Reductase/metabolism , Iron/metabolism , Trypanosoma cruzi/enzymology , Amino Acid Sequence , Animals , Blotting, Western , Cell Membrane/enzymology , Chagas Disease/parasitology , Colorimetry , FMN Reductase/analysis , FMN Reductase/chemistry , Fluorescent Antibody Technique , Humans , Phylogeny , Poisson Distribution , Real-Time Polymerase Chain Reaction , Sequence Alignment , Trypanosoma cruzi/classification , Trypanosoma cruzi/growth & development , Trypanosoma cruzi/metabolism , Up-Regulation
7.
Dokl Biol Sci ; 491(1): 43-46, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32483706

ABSTRACT

The regularities of the functioning of a number of enzymes in a viscous environment created by natural polymers, starch and gelatin are examined. Based on the analysis of kinetic curves of thermal inactivation, mechanisms of thermal inactivation of enzymes in a viscous microenvironment are proposed. Using the example of butyrylcholinesterase, NAD(P)H:FMN oxidoreductase, and coupled system of the luminous bacteria (NAD(P)H:FMN oxidoreductase + luciferase), the conditions, under which starch and gelatin have a stabilizing effect on enzyme activity during storage and exposure to various physical and chemical environmental factors, were found. A significant increase in the stabilizing effect is achieved by eliminating water during drying the enzyme preparations immobilized in starch and gelatin polymer gels.


Subject(s)
Enzymes/chemistry , Gelatin/chemistry , Starch/chemistry , Butyrylcholinesterase/chemistry , Butyrylcholinesterase/metabolism , Enzyme Stability , Enzymes/metabolism , FMN Reductase/chemistry , FMN Reductase/metabolism , Gels/chemistry , Kinetics , Luciferases/chemistry , Luciferases/metabolism , NAD/chemistry , NAD/metabolism
8.
Chembiochem ; 21(10): 1481-1491, 2020 05 15.
Article in English | MEDLINE | ID: mdl-31886941

ABSTRACT

We have employed computational approaches-FireProt and FRESCO-to predict thermostable variants of the reductase component (C1 ) of (4-hydroxyphenyl)acetate 3-hydroxylase. With the additional aid of experimental results, two C1 variants, A166L and A58P, were identified as thermotolerant enzymes, with thermostability improvements of 2.6-5.6 °C and increased catalytic efficiency of 2- to 3.5-fold. After heat treatment at 45 °C, both of the thermostable C1 variants remain active and generate reduced flavin mononucleotide (FMNH- ) for reactions catalyzed by bacterial luciferase and by the monooxygenase C2 more efficiently than the wild type (WT). In addition to thermotolerance, the A166L and A58P variants also exhibited solvent tolerance. Molecular dynamics (MD) simulations (6 ns) at 300-500 K indicated that mutation of A166 to L and of A58 to P resulted in structural changes with increased stabilization of hydrophobic interactions, and thus in improved thermostability. Our findings demonstrated that improvements in the thermostability of C1 enzyme can lead to broad-spectrum uses of C1 as a redox biocatalyst for future industrial applications.


Subject(s)
FMN Reductase/metabolism , Flavin Mononucleotide/metabolism , Mutation , Protein Engineering/methods , Solvents/chemistry , Enzyme Stability , FMN Reductase/chemistry , FMN Reductase/genetics , Molecular Dynamics Simulation
9.
J Biol Inorg Chem ; 24(6): 849-861, 2019 09.
Article in English | MEDLINE | ID: mdl-31410573

ABSTRACT

Class Ib ribonucleotide reductases (RNR) utilize a di-nuclear manganese or iron cofactor for reduction of superoxide or molecular oxygen, respectively. This generates a stable tyrosyl radical (Y·) in the R2 subunit (NrdF), which is further used for ribonucleotide reduction in the R1 subunit of RNR. Here, we report high-resolution crystal structures of Bacillus anthracis NrdF in the metal-free form (1.51 Å) and in complex with manganese (MnII/MnII, 1.30 Å). We also report three structures of the protein in complex with iron, either prepared anaerobically (FeII/FeII form, 1.32 Å), or prepared aerobically in the photo-reduced FeII/FeII form (1.63 Å) and with the partially oxidized metallo-cofactor (1.46 Å). The structures reveal significant conformational dynamics, likely to be associated with the generation, stabilization, and transfer of the radical to the R1 subunit. Based on observed redox-dependent structural changes, we propose that the passage for the superoxide, linking the FMN cofactor of NrdI and the metal site in NrdF, is closed upon metal oxidation, blocking access to the metal and radical sites. In addition, we describe the structural mechanics likely to be involved in this process.


Subject(s)
Bacillus anthracis/enzymology , Bacillus anthracis/metabolism , Iron/metabolism , Manganese/metabolism , Metalloproteases/metabolism , Crystallography, X-Ray , FMN Reductase/chemistry , FMN Reductase/genetics , FMN Reductase/metabolism , Ferritins/chemistry , Ferritins/metabolism , Flavin Mononucleotide/chemistry , Flavin Mononucleotide/genetics , Flavin Mononucleotide/metabolism , Metalloproteases/chemistry , Metalloproteases/genetics , Ribonucleotide Reductases
10.
FEBS Lett ; 593(22): 3228-3238, 2019 11.
Article in English | MEDLINE | ID: mdl-31322728

ABSTRACT

The nonsense-mediated mRNA decay (NMD) pathway regulates mRNAs that aberrantly terminate translation. This includes aberrant mRNAs and functional natural mRNAs. Natural mRNA degradation by NMD is triggered by mRNA features and environmental cues. Saccharomyces cerevisiae encodes multiple proteins with ferric and cupric reductase activity. Here, we examined the regulation by NMD of two mRNAs, FRE1 and FRE2, encoding ferric and cupric reductases in S. cerevisiae. We found that FRE2 mRNAs are regulated by NMD under noninducing conditions and that the FRE2 3'-UTR contributes to the degradation of the mRNAs by NMD. Conversely, FRE1 mRNAs are not regulated by NMD under comparable conditions. These findings suggest that regulation of functionally related mRNAs by NMD can be differential and conditional.


Subject(s)
FMN Reductase/chemistry , FMN Reductase/genetics , Saccharomyces cerevisiae/growth & development , 3' Untranslated Regions , Copper/metabolism , Iron/metabolism , Nonsense Mediated mRNA Decay , RNA, Messenger/chemistry , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Stress, Physiological
11.
Biosci Biotechnol Biochem ; 83(10): 1875-1883, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31161886

ABSTRACT

(-)-Rotundone, a sesquiterpenoid that has a characteristic woody and peppery odor, is a key aroma component of spicy foodstuffs, such as black pepper and Australian Shiraz wine. (-)-Rotundone shows the lowest level of odor threshold in natural compounds and remarkably improves the quality of various fruit flavors. To develop a method for the synthesis of (-)-rotundone, we focused on non-heme Fe2+-chelates, which are biomimetic catalysts of the active center of oxygenases and enzymatic supply and regeneration of those catalysts. That is, we constructed a unique combination system composed of the oxidative synthesis of (-)-rotundone using the non-heme Fe2+-chelate catalyst, Fe(II)-EDTA, and the enzymatic supply and regeneration of Fe2+-chelate by ferric-chelate reductase, YqjH, from Escherichia coli. In addition, we improved the yield of (-)-rotundone by the application of cyclodextrin and glucose dehydrogenase to this system, and thus established a platform for efficient (-)-rotundone production.


Subject(s)
FMN Reductase/chemistry , Iron Chelating Agents/chemistry , Odorants , Sesquiterpenes/chemical synthesis , Catalysis , Cyclodextrins/chemistry , Glucose 1-Dehydrogenase/chemistry , Wine/analysis
12.
Science ; 364(6446): 1166-1169, 2019 06 21.
Article in English | MEDLINE | ID: mdl-31221855

ABSTRACT

Photoexcitation is a common strategy for initiating radical reactions in chemical synthesis. We found that photoexcitation of flavin-dependent "ene"-reductases changes their catalytic function, enabling these enzymes to promote an asymmetric radical cyclization. This reactivity enables the construction of five-, six-, seven-, and eight-membered lactams with stereochemical preference conferred by the enzyme active site. After formation of a prochiral radical, the enzyme guides the delivery of a hydrogen atom from flavin-a challenging feat for small-molecule chemical reagents. The initial electron transfer occurs through direct excitation of an electron donor-acceptor complex that forms between the substrate and the reduced flavin cofactor within the enzyme active site. Photoexcitation of promiscuous flavoenzymes has thus furnished a previously unknown biocatalytic reaction.


Subject(s)
Biocatalysis/radiation effects , FMN Reductase/chemistry , FMN Reductase/radiation effects , Cyclization , Enzyme Activation , Lactams/chemical synthesis , Light , Stereoisomerism
13.
Dokl Biochem Biophys ; 485(1): 107-110, 2019 Mar.
Article in English | MEDLINE | ID: mdl-31201626

ABSTRACT

In this study, we formulated the principles of designing bioluminescent enzyme tests for assessing the quality of complex media, which consist in providing the maximum sensitivity to potentially toxic chemicals at a minimal impact of uncontaminated complex media. The developed principles served as a basis for designing a new bioluminescent method for an integrated rapid assessment of chemical safety of fruits and vegetables, which is based on using the luminous bacteria enzymes (NAD(P)H:FMN oxidoreductase and luciferase) as a test system.


Subject(s)
Bacteria/enzymology , Bacterial Proteins/chemistry , FMN Reductase/chemistry , Food Analysis/methods , Luciferases/chemistry , Luminescent Measurements/methods
14.
Methods Enzymol ; 620: 399-422, 2019.
Article in English | MEDLINE | ID: mdl-31072495

ABSTRACT

Bacterial two-component flavin-dependent monooxygenase systems catalyze the oxidation of diverse metabolic reactions. There are several shared mechanistic features in the two-component monooxygenase systems that differ from canonical monooxygenase enzymes. The flavin reductases catalyze the reductive half-reaction, and the reduced flavin is transferred to the monooxygenase enzyme. The oxidative half-reaction catalyzed by the monooxygenase enzyme has been proposed to occur through the formation of a (hydro)peroxyflavin intermediate. In some two-component flavin-dependent systems the mechanism of flavin transfer involves protein-protein interactions between the flavin reductase and monooxygenase enzyme. Methods are presented that provide an alternative approach from flavin-bound monooxygenases to evaluate the kinetic properties and flavin transfer mechanism of the two-component flavin-dependent monooxygenase systems.


Subject(s)
Enzyme Assays/methods , FMN Reductase/chemistry , Mixed Function Oxygenases/chemistry , Flavins/chemistry , Kinetics , Oxidation-Reduction , Protein Binding , Substrate Specificity
15.
Proteins ; 87(9): 723-729, 2019 09.
Article in English | MEDLINE | ID: mdl-30985024

ABSTRACT

In luminous bacteria NAD(P)H:flavin-oxidoreductases LuxG and Fre, there are homologous enzymes that could provide a luciferase with reduced flavin. Although Fre functions as a housekeeping enzyme, LuxG appears to be a source of reduced flavin for bioluminescence as it is transcribed together with luciferase. This study is aimed at providing the basic conception of Fre and LuxG evolution and revealing the peculiarities of the active site structure resulted from a functional variation within the oxidoreductase family. A phylogenetic analysis has demonstrated that Fre and LuxG oxidoreductases have evolved separately after the gene duplication event, and consequently, they have acquired changes in the conservation of functionally related sites. Namely, different evolutionary rates have been observed at the site responsible for specificity to flavin substrate (Arg 46). Also, Tyr 72 forming a part of a mobile loop involved in FAD binding has been found to be conserved among Fre in contrast to LuxG oxidoreductases. The conservation of different amino acid types in NAD(P)H binding site has been defined for Fre (arginine) and LuxG (proline) oxidoreductases.


Subject(s)
Bacterial Proteins/chemistry , FMN Reductase/chemistry , Oxidoreductases/chemistry , Bacterial Proteins/classification , Bacterial Proteins/metabolism , Binding Sites , Dinitrocresols/chemistry , Dinitrocresols/metabolism , FMN Reductase/classification , FMN Reductase/metabolism , Molecular Structure , Oxidoreductases/classification , Oxidoreductases/metabolism , Phylogeny , Spinacia oleracea/metabolism
16.
FEBS Lett ; 593(7): 697-702, 2019 04.
Article in English | MEDLINE | ID: mdl-30883730

ABSTRACT

Ferric reductase B (FerB) is a flavin mononucleotide (FMN)-containing NAD(P)H:acceptor oxidoreductase structurally close to the Gluconacetobacter hansenii chromate reductase (ChrR). The crystal structure of ChrR was previously determined with a chloride bound proximal to FMN in the vicinity of Arg101, and the authors suggested that the anionic electron acceptors, chromate and uranyl tricarbonate, bind similarly. Here, we identify the corresponding arginine residue in FerB (Arg95) as being important for the reaction of FerB with superoxide. Four mutants at position 95 were prepared and found kinetically to have impaired capacity for superoxide binding. Stopped-flow data for the flavin cofactor showed that the oxidative step is rate limiting for catalytic turnover. The findings are consistent with a role for FerB as a superoxide scavenging contributor.


Subject(s)
FMN Reductase/chemistry , Flavins/genetics , Protein Conformation , Superoxides/metabolism , Amino Acid Sequence/genetics , Arginine/genetics , Catalytic Domain/genetics , Crystallography, X-Ray , FMN Reductase/genetics , Flavin Mononucleotide/chemistry , Flavin Mononucleotide/genetics , Flavins/metabolism , Kinetics , Oxidation-Reduction , Oxidoreductases/chemistry , Oxidoreductases/genetics , Paracoccus denitrificans/chemistry , Paracoccus denitrificans/enzymology
17.
J Agric Food Chem ; 67(8): 2245-2254, 2019 Feb 27.
Article in English | MEDLINE | ID: mdl-30721044

ABSTRACT

Chlorpyrifos is one of the most used organophosphorus insecticides. It is commonly degraded to 3,5,6-trichloro-2-pyridinol (TCP), which is water-soluble and toxic. Bacteria can degrade chlorpyrifos and TCP, but the biodegradation mechanism has not been well-characterized. Recently isolated Cupriavidus nantongensis X1T can completely degrade 100 mg/L chlorpyrifos and 20 mg/L TCP with half-lives of 6 and 8 h, respectively. We annotated a complete gene cluster responsible for TCP degradation in recently sequenced strain X1T. Two key genes, tcpA and fre, were cloned from X1T and transferred and expressed in Escherichia coli BL21(DE3). Degradation of TCP by X1T whole cell was compared with that by the enzymes 2,4,6-trichlorophenol monooxygenase and NAD(P)H:flavin reductase expressed and purified from E. coli BL21(DE3). Novel metabolites of TCP were isolated and characterized, indicating stepwise dechlorination of TCP, which was confirmed by TCP disappearance, mass balance, and detection and formation kinetics of chloride ion from TCP.


Subject(s)
Bacterial Proteins/chemistry , Chlorpyrifos/metabolism , Cupriavidus/enzymology , FMN Reductase/chemistry , Insecticides/metabolism , Mixed Function Oxygenases/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biodegradation, Environmental , Chlorpyrifos/chemistry , Cupriavidus/chemistry , Cupriavidus/genetics , Cupriavidus/metabolism , FMN Reductase/genetics , FMN Reductase/metabolism , Halogenation , Insecticides/chemistry , Kinetics , Mixed Function Oxygenases/genetics , Mixed Function Oxygenases/metabolism
18.
Protein Sci ; 28(1): 123-134, 2019 01.
Article in English | MEDLINE | ID: mdl-30171650

ABSTRACT

The π-helix located at the tetramer interface of two-component FMN-dependent reductases contributes to the structural divergence from canonical FMN-bound reductases within the NADPH:FMN reductase family. The π-helix in the SsuE FMN-dependent reductase of the alkanesulfonate monooxygenase system has been proposed to be generated by the insertion of a Tyr residue in the conserved α4-helix. Variants of Tyr118 were generated, and their X-ray crystal structures determined, to evaluate how these alterations affect the structural integrity of the π-helix. The structure of the Y118A SsuE π-helix was converted to an α-helix, similar to the FMN-bound members of the NADPH:FMN reductase family. Although the π-helix was altered, the FMN binding region remained unchanged. Conversely, deletion of Tyr118 disrupted the secondary structural properties of the π-helix, generating a random coil region in the middle of helix 4. Both the Y118A and Δ118 SsuE SsuE variants crystallize as a dimer. The MsuE FMN reductase involved in the desulfonation of methanesulfonates is structurally similar to SsuE, but the π-helix contains a His insertional residue. Exchanging the π-helix insertional residue of each enzyme did not result in equivalent kinetic properties. Structure-based sequence analysis further demonstrated the presence of a similar Tyr residue in an FMN-bound reductase in the NADPH:FMN reductase family that is not sufficient to generate a π-helix. Results from the structural and functional studies of the FMN-dependent reductases suggest that the insertional residue alone is not solely responsible for generating the π-helix, and additional structural adaptions occur to provide the altered gain of function.


Subject(s)
Bacterial Proteins/chemistry , FMN Reductase/chemistry , Flavin Mononucleotide/chemistry , Mutation, Missense , NADP/chemistry , Protein Multimerization , Pseudomonas aeruginosa/enzymology , Amino Acid Substitution , Bacterial Proteins/genetics , Crystallography, X-Ray , FMN Reductase/genetics , Protein Structure, Secondary , Pseudomonas aeruginosa/genetics
19.
Z Naturforsch C J Biosci ; 74(3-4): 101-104, 2019 Feb 25.
Article in English | MEDLINE | ID: mdl-30379645

ABSTRACT

There is an increasing interest in the application of peroxygenases in biocatalysis, because of their ability to catalyse the oxyfunctionalisation reaction in a stereoselective fashion and with high catalytic efficiencies, while using hydrogen peroxide or organic peroxides as oxidant. However, enzymes belonging to this class exhibit a very low stability in the presence of peroxides. With the aim of bypassing this fast and irreversible inactivation, we study the use of a gradual supply of hydrogen peroxide to maintain its concentration at stoichiometric levels. In this contribution, we report a multienzymatic cascade for in situ generation of hydrogen peroxide. In the first step, in the presence of NAD+ cofactor, formate dehydrogenase from Candida boidinii (FDH) catalysed the oxidation of formate yielding CO2. Reduced NADH was reoxidised by the reduction of the flavin mononucleotide cofactor bound to an old yellow enzyme homologue from Bacillus subtilis (YqjM), which subsequently reacts with molecular oxygen yielding hydrogen peroxide. Finally, this system was coupled to the hydroxylation of ethylbenzene reaction catalysed by an evolved peroxygenase from Agrocybe aegerita (rAaeUPO). Additionally, we studied the influence of different reaction parameters on the performance of the cascade with the aim of improving the turnover of the hydroxylation reaction.


Subject(s)
Bacterial Proteins/chemistry , FMN Reductase/chemistry , Formate Dehydrogenases/chemistry , Fungal Proteins/chemistry , Hydrogen Peroxide/chemical synthesis , Mixed Function Oxygenases/chemistry , Agrocybe/chemistry , Agrocybe/enzymology , Bacillus subtilis/chemistry , Bacillus subtilis/enzymology , Bacterial Proteins/metabolism , Benzene Derivatives/chemistry , Benzene Derivatives/metabolism , Biocatalysis , Candida/chemistry , Candida/enzymology , Carbon Dioxide/chemistry , Carbon Dioxide/metabolism , Coenzymes/chemistry , Coenzymes/metabolism , FMN Reductase/metabolism , Flavin Mononucleotide/chemistry , Flavin Mononucleotide/metabolism , Formate Dehydrogenases/metabolism , Formates/chemistry , Formates/metabolism , Fungal Proteins/metabolism , Hydrogen Peroxide/metabolism , Hydroxylation , Kinetics , Mixed Function Oxygenases/metabolism , NAD/chemistry , NAD/metabolism , Oxidation-Reduction , Oxygen/chemistry , Oxygen/metabolism , Stereoisomerism
20.
Biochemistry ; 57(30): 4469-4477, 2018 07 31.
Article in English | MEDLINE | ID: mdl-29979040

ABSTRACT

A subgroup of enzymes in the NAD(P)H:FMN reductase family is comprised of flavin reductases from two-component monooxygenase systems. The diverging structural feature in these FMN reductases is a π-helix centrally located at the tetramer interface that is generated by the insertion of an amino acid in a conserved α4 helix. The Tyr insertional residue of SsuE makes specific contacts across the dimer interface that may assist in the altered mechanistic properties of this enzyme. The Y118F SsuE variant maintained the π-π stacking interactions at the tetramer interface and had kinetic parameters similar to those of wild-type SsuE. Substitution of the π-helical residue (Tyr118) to Ala or Ser transformed the enzymes into flavin-bound SsuE variants that could no longer support flavin reductase and desulfonation activities. These variants existed as dimers and could form protein-protein interactions with SsuD even though flavin transfer was not sustained. The ΔY118 SsuE variant was flavin-free as purified and did not undergo the tetramer to dimer oligomeric shift with the addition of flavin. The absence of desulfonation activity can be attributed to the inability of ΔY118 SsuE to promote flavin transfer and undergo the requisite oligomeric changes to support desulfonation. Results from these studies provide insights into the role of the SsuE π-helix in promoting flavin transfer and oligomeric changes that support protein-protein interactions with SsuD.


Subject(s)
Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , FMN Reductase/metabolism , Amino Acid Sequence , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/genetics , FMN Reductase/chemistry , FMN Reductase/genetics , Flavins/metabolism , Kinetics , Mixed Function Oxygenases/metabolism , Models, Molecular , Point Mutation , Protein Conformation, alpha-Helical , Protein Interaction Maps , Protein Multimerization , Substrate Specificity
SELECTION OF CITATIONS
SEARCH DETAIL
...