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1.
BMC Microbiol ; 17(1): 61, 2017 03 14.
Article in English | MEDLINE | ID: mdl-28288582

ABSTRACT

BACKGROUND: Hydrogen sulfide (H2S) is a toxic foul-smelling gas produced by subgingival biofilms in patients with periodontal disease and is suggested to be part of the pathogenesis of the disease. We studied the H2S-producing protein expression of bacterial strains associated with periodontal disease. Further, we examined the effect of a cysteine-rich growth environment on the synthesis of intracellular enzymes in F. nucleatum polymorphum ATCC 10953. The proteins were subjected to one-dimensional (1DE) and two-dimensional (2DE) gel electrophoresis An in-gel activity assay was used to detect the H2S-producing enzymes; Sulfide from H2S, produced by the enzymes in the gel, reacted with bismuth forming bismuth sulfide, illustrated as brown bands (1D) or spots (2D) in the gel. The discovered proteins were identified with liquid chromatography - tandem mass spectrometry (LC-MS/MS). RESULTS: Cysteine synthase and proteins involved in the production of the coenzyme pyridoxal 5'phosphate (that catalyzes the production of H2S) were frequently found among the discovered enzymes. Interestingly, a higher expression of H2S-producing enzymes was detected from bacteria incubated without cysteine prior to the experiment. CONCLUSIONS: Numerous enzymes, identified as cysteine synthase, were involved in the production of H2S from cysteine and the expression varied among Fusobacterium spp. and strains. No enzymes were detected with the in-gel activity assay among the other periodontitis-associated bacteria tested. The expression of the H2S-producing enzymes was dependent on environmental conditions such as cysteine concentration and pH but less dependent on the presence of serum and hemin.


Subject(s)
Bacterial Proteins/metabolism , Cysteine/metabolism , Fusobacterium/enzymology , Fusobacterium/metabolism , Hydrogen Sulfide/metabolism , Bacterial Proteins/analysis , Biofilms , Bismuth/metabolism , Cysteine Synthase/metabolism , Dental Plaque , Electrophoresis, Gel, Two-Dimensional/methods , Humans , Hydrogen-Ion Concentration , Periodontal Diseases/microbiology , Proteomics , Sulfides/metabolism , Tandem Mass Spectrometry
2.
Bioorg Med Chem Lett ; 24(5): 1432-6, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-24507924

ABSTRACT

D-Glutamate is an essential biosynthetic building block of the peptidoglycans that encapsulate the bacterial cell wall. Glutamate racemase catalyzes the reversible formation of D-glutamate from L-glutamate and, hence, the enzyme is a potential therapeutic target. We show that the novel cyclic substrate-product analogue (R,S)-1-hydroxy-1-oxo-4-amino-4-carboxyphosphorinane is a modest, partial noncompetitive inhibitor of glutamate racemase from Fusobacterium nucleatum (FnGR), a pathogen responsible, in part, for periodontal disease and colorectal cancer (Ki=3.1±0.6 mM, cf. Km=1.41±0.06 mM). The cyclic substrate-product analogue (R,S)-4-amino-4-carboxy-1,1-dioxotetrahydro-thiopyran was a weak inhibitor, giving only ∼30% inhibition at a concentration of 40 mM. The related cyclic substrate-product analogue 1,1-dioxo-tetrahydrothiopyran-4-one was a cooperative mixed-type inhibitor of FnGR (Ki=18.4±1.2 mM), while linear analogues were only weak inhibitors of the enzyme. For glutamate racemase, mimicking the structure of both enantiomeric substrates (substrate-product analogues) serves as a useful design strategy for developing inhibitors. The new cyclic compounds developed in the present study may serve as potential lead compounds for further development.


Subject(s)
Amino Acid Isomerases/metabolism , Carrier Proteins/chemistry , Enzyme Inhibitors/chemistry , Glutamic Acid/chemistry , Proteolipids/chemistry , Amino Acid Isomerases/antagonists & inhibitors , Bacillus subtilis/enzymology , Carrier Proteins/metabolism , Catalytic Domain , Enzyme Inhibitors/metabolism , Fusobacterium/enzymology , Glutamic Acid/metabolism , Protein Binding , Proteolipids/metabolism , Substrate Specificity
3.
FEBS J ; 278(14): 2540-51, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21575137

ABSTRACT

The pathways of glutamate catabolism in the anaerobic bacterium Fusobacterium varium, grown on complex, undefined medium and chemically defined, minimal medium, were investigated using specifically labelled (13)C-glutamate. The metabolic end-products acetate and butyrate were isolated from culture fluids and derivatized for analysis by nuclear magnetic resonance and mass spectrometry. On complex medium, labels from L-[1-(13)C]glutamate and L-[4-(13)C]glutamate were incorporated into C1 of acetate and equally into C1/C3 of butyrate, while label derived from L-[5-(13)C]glutamate was not incorporated. The isotopic incorporation results and the detection of glutamate mutase and 3-methylaspartate ammonia lyase in cell extracts are most consistent with the methylaspartate pathway, the best known route of glutamate catabolism in Clostridium species. When F. varium was grown on defined medium, label from L-[4-(13)C]glutamate was incorporated mainly into C4 of butyrate, demonstrating a major role for the hydroxyglutarate pathway. Upon addition of coenzyme B(12) or cobalt ion to the defined medium in replicate experiments, isotope was located equally at C1/C3 of butyrate in accord with the methylaspartate pathway. Racemization of D-glutamate and subsequent degradation of L-glutamate via the methylaspartate pathway are supported by incorporation of label into C2 of acetate and equally into C2/C4 of butyrate from D-[3-(13)C]glutamate and the detection of a cofactor-independent glutamate racemase in cell extracts. Together the results demonstrate a major role for the methylaspartate pathway of glutamate catabolism in F. varium and substantial participation of the hydroxyglutarate pathway when coenzyme B(12) is not available.


Subject(s)
Fusobacterium/metabolism , Glutamic Acid/chemistry , Glutamic Acid/metabolism , Acetic Acid/chemistry , Acetic Acid/isolation & purification , Acetic Acid/metabolism , Amino Acid Isomerases/metabolism , Ammonia-Lyases/chemistry , Ammonia-Lyases/metabolism , Bacterial Proteins , Butyrates/chemistry , Butyrates/isolation & purification , Butyrates/metabolism , Carbon Isotopes , Chromatography, High Pressure Liquid , Cobalt/metabolism , Cobamides/metabolism , Fusobacterium/enzymology , Glutarates , Intramolecular Transferases/chemistry , Intramolecular Transferases/metabolism , Kinetics , Magnetic Resonance Spectroscopy , Mass Spectrometry , Molecular Weight , N-Methylaspartate , Stereoisomerism
4.
Proc Natl Acad Sci U S A ; 100(3): 839-44, 2003 Feb 04.
Article in English | MEDLINE | ID: mdl-12538874

ABSTRACT

We show here sodium ion cycling between complex I from Klebsiella pneumoniae and the F(1)F(0) ATP synthase from Ilyobacter tartaricus in a reconstituted proteoliposome system. In the course of NADH oxidation by complex I, an electrochemical sodium ion gradient was established and served as a driving force for the synthesis of ATP from ADP and phosphate. In the opposite direction, the deltamu(Na(+)) generated by ATP hydrolysis could be coupled to NADH formation by reversed electron transfer from ubiquinol to NAD. For reverse electron transfer, a transmembrane voltage larger than 30 mV was obligatory. No NADH-driven proton transport into the lumen of proteoliposomes was detected. We conclude that Na(+) is used as the exclusive coupling ion by the enterobacterial complex I.


Subject(s)
Fusobacterium/enzymology , Ions , Klebsiella/metabolism , Proton-Translocating ATPases/metabolism , Sodium , Adenosine Triphosphate/metabolism , Electrochemistry , Electrons , Hydrolysis , Liposomes , Models, Biological , NAD/metabolism , Oxygen/metabolism , Sodium/metabolism , Time Factors
5.
J Mol Biol ; 322(2): 369-81, 2002 Sep 13.
Article in English | MEDLINE | ID: mdl-12217697

ABSTRACT

The most prominent residue of subunit a of the F(1)F(o) ATP synthase is a universally conserved arginine (aR227 in Propionigenium modestum), which was reported to permit no substitution with retention of ATP synthesis or H(+)-coupled ATP hydrolysis activity. We show here that ATP synthases with R227K or R227H mutations in the P.modestum a subunit catalyse ATP-driven Na(+) transport above or below pH 8.0, respectively. Reconstituted F(o) with either mutation catalysed 22Na(+)(out)/Na(+)(in) exchange with similar pH profiles as found in ATP-driven Na(+) transport. ATP synthase with an aR227A substitution catalysed Na(+)-dependent ATP hydrolysis, which was completely inhibited by dicyclohexylcarbodiimide, but not coupled to Na(+) transport. This suggests that in the mutant the dissociation of Na(+) becomes more difficult and that the alkali ions remain therefore permanently bound to the c subunit sites. The reconstituted mutant enzyme was also able to synthesise ATP in the presence of a membrane potential, which stopped at elevated external Na(+) concentrations. These observations reinforce the importance of aR227 to facilitate the dissociation of Na(+) from approaching rotor sites. This task of aR227 was corroborated by other results with the aR227A mutant: (i) after reconstitution into liposomes, F(o) with the aR227A mutation did not catalyse 22Na(+)(out)/Na(+)(in) exchange at high internal sodium concentrations, and (ii) at a constant (Delta)pNa(+), 22Na(+) uptake was inhibited at elevated internal Na(+) concentrations. Hence, in mutant aR227A, sodium ions can only dissociate from their rotor sites into a reservoir of low sodium ion concentration, whereas in the wild-type the positively charged aR227 allows the dissociation of Na(+) even into compartments of high Na(+) concentration.


Subject(s)
Fusobacterium/enzymology , Mutation/genetics , Proton-Translocating ATPases/chemistry , Proton-Translocating ATPases/metabolism , Adenosine Triphosphate/biosynthesis , Adenosine Triphosphate/metabolism , Amino Acid Substitution/genetics , Dicyclohexylcarbodiimide/pharmacology , Fusobacterium/genetics , Histidine/genetics , Histidine/metabolism , Hydrogen-Ion Concentration , Hydrolysis/drug effects , Lysine/genetics , Lysine/metabolism , Protein Subunits , Proteolipids/metabolism , Proton-Translocating ATPases/genetics , Sodium/metabolism , Sodium/pharmacology , Structure-Activity Relationship
6.
FEBS Lett ; 525(1-3): 156-63, 2002 Aug 14.
Article in English | MEDLINE | ID: mdl-12163180

ABSTRACT

F0F1 ATP synthases are the smallest rotary motors in nature and work as ATP factories in bacteria, plants and animals. Here we report on the first observation of intersubunit rotation in fully coupled single F0F1 molecules during ATP synthesis or hydrolysis. We investigate the Na+-translocating ATP synthase of Propionigenium modestum specifically labeled by a single fluorophore at one c subunit using polarization-resolved confocal microscopy. Rotation during ATP synthesis was observed with the immobilized enzyme reconstituted into proteoliposomes after applying a diffusion potential, but not with a Na+ concentration gradient alone. During ATP hydrolysis, stepwise rotation of the labeled c subunit was found in the presence of 2 mM NaCl, but not without the addition of Na+ ions. Moreover, upon the incubation with the F0-specific inhibitor dicyclohexylcarbodiimide the rotation was severely inhibited.


Subject(s)
Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Proton-Translocating ATPases/chemistry , Enzyme Inhibitors/pharmacology , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/drug effects , Enzymes, Immobilized/genetics , Fluorescent Dyes , Fusobacterium/enzymology , Hydrolysis , Liposomes/chemistry , Macromolecular Substances , Microscopy, Confocal , Models, Molecular , Molecular Motor Proteins/chemistry , Molecular Motor Proteins/drug effects , Molecular Motor Proteins/genetics , Mutagenesis, Site-Directed , Proton-Translocating ATPases/antagonists & inhibitors , Proton-Translocating ATPases/genetics , Rotation , Sodium/chemistry , Sodium/pharmacology
7.
Eur J Biochem ; 269(7): 1942-6, 2002 Apr.
Article in English | MEDLINE | ID: mdl-11952796

ABSTRACT

The subunit c from the ATP synthase of Propionigenium modestum was studied by NMR in chloroform/methanol/water (4 : 4 : 1). In this solvent, subunit c consists of two helical segments, comprised of residues L5 to I26 and G29 to N82, respectively. On comparing the secondary structure of subunit c from P. modestum in the organic solvent mixture with that in dodecylsulfate micelles several deviations became apparent: in the organic solvent, the interruption of the alpha helical structure within the conserved GXGXGXGX motif was shortened from five to two residues, the prominent interruption of the alpha helical structure in the cystoplasmic loop region was not apparent, and neither was there a break in the alpha helix after the sodium ion-binding Glu65 residue. The folding of subunit c of P. modestum in the organic solvent also deviated from that of Escherichia coli in the same environment, the most important difference being that subunit c of P. modestum did not adopt a stable hairpin structure like subunit c of E. coli.


Subject(s)
Fusobacterium/enzymology , Proton-Translocating ATPases/chemistry , Amino Acid Sequence , Chloroform/chemistry , Escherichia coli/enzymology , Methanol/chemistry , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Secondary , Sequence Homology, Amino Acid , Water/chemistry
8.
J Biol Chem ; 277(5): 3504-10, 2002 Feb 01.
Article in English | MEDLINE | ID: mdl-11719523

ABSTRACT

A carbodiimide with a photoactivatable diazirine substituent was synthesized and incubated with the Na(+)-translocating F(1)F(0) ATP synthase from both Propionigenium modestum and Ilyobacter tartaricus. This caused severe inhibition of ATP hydrolysis activity in the absence of Na(+) ions but not in its presence, indicating the specific reaction with the Na(+) binding c-Glu(65) residue. Photocross-linking was investigated with the substituted ATP synthase from both bacteria in reconstituted 1-palmitoyl-2-oleyl-sn-glycero-3-phosphocholine (POPC)-containing proteoliposomes. A subunit c/POPC conjugate was found in the illuminated samples but no a-c cross-links were observed, not even after ATP-induced rotation of the c-ring. Our substituted diazirine moiety on c-Glu(65) was therefore in close contact with phospholipid but does not contact subunit a. Na(+)in/(22)Na(+)out exchange activity of the ATP synthase was not affected by modifying the c-Glu(65) sites with the carbodiimide, but upon photoinduced cross-linking, this activity was abolished. Cross-linking the rotor to lipids apparently arrested rotational mobility required for moving Na(+) ions back and forth across the membrane. The site of cross-linking was analyzed by digestions of the substituted POPC using phospholipases C and A(2) and by mass spectroscopy. The substitutions were found exclusively at the fatty acid side chains, which indicates that c-Glu(65) is located within the core of the membrane.


Subject(s)
Adenosine Triphosphatases/chemistry , Cation Transport Proteins/chemistry , Proton-Translocating ATPases/chemistry , Sodium/metabolism , Adenosine Triphosphatases/isolation & purification , Binding Sites , Carbodiimides/chemical synthesis , Cation Transport Proteins/isolation & purification , Cell Membrane/enzymology , Cell Membrane/ultrastructure , Fusobacterium/enzymology , Ions/metabolism , Liposomes , Molecular Conformation , Phosphatidylcholines , Protein Subunits , Proton-Translocating ATPases/isolation & purification , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
9.
FEBS Lett ; 505(3): 353-6, 2001 Sep 21.
Article in English | MEDLINE | ID: mdl-11576527

ABSTRACT

The isolated rotor cylinder of the ATP synthase from Ilyobacter tartaricus was reconstituted into two-dimensional crystalline arrays. Atomic force microscopy imaging indicated a central cavity on one side of the rotor and a central plug protruding from the other side. Upon incubation with phospholipase C, the plug disappeared, but the appearance of the surrounding c subunit oligomer was not affected. This indicates that the plug consists of phospholipids. As the detergent-purified c cylinder is completely devoid of phospholipids, these are incorporated into the central hole from one side of the cylinder during the reconstitution procedure.


Subject(s)
Fusobacterium/enzymology , Phospholipids/chemistry , Proton-Translocating ATPases/chemistry , Microscopy, Atomic Force
10.
Mol Cell Biochem ; 221(1-2): 117-26, 2001 May.
Article in English | MEDLINE | ID: mdl-11506174

ABSTRACT

Beta-methylaspartase (EC 4.3.1.2) was purified 20-fold in 35% yield from Fusobacterium varium, an obligate anaerobe. The purification steps included heat treatment, fractional precipitation with ammonium sulfate and ethanol, gel filtration, and ion exchange chromatography on DEAE-Sepharose. The enzyme is dimeric, consisting of two identical 46 kDa subunits, and requires Mg2+ (Km = 0.27+/-0.01 mM) and K+ (Km = 3.3+/-0.8 mM) for maximum activity. Beta-methylaspartase-catalyzed addition of ammonia to mesaconate yielded two diastereomeric amino acids, identified by HPLC as (2S,3S)-3-methylaspartate (major product) and (2S,3R)-3-methylaspartate (minor product). Optimal activity for the deamination of (2S,3S)-3-methylaspartate (Km = 0.51+/-0.04 mM) was observed at pH 9.7. The N-terminal protein sequence (30 residues) of the F. varium enzyme is 83% identical to the corresponding sequence of the clostridial enzyme.


Subject(s)
Ammonia-Lyases/chemistry , Ammonia-Lyases/isolation & purification , Aspartic Acid/analogs & derivatives , Fusobacterium/enzymology , Amino Acid Sequence , Ammonia/metabolism , Ammonia-Lyases/metabolism , Aspartic Acid/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Cations/pharmacology , Chromatography, Gel , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Deamination , Dimerization , Hydrogen-Ion Concentration , Models, Chemical , Molecular Sequence Data , Molecular Weight , Sequence Alignment , Stereoisomerism
11.
Biosci Biotechnol Biochem ; 65(5): 1163-9, 2001 May.
Article in English | MEDLINE | ID: mdl-11440132

ABSTRACT

Fusobacterium K-60, a ginsenoside Rb1-metabolizing bacterium, was isolated from human intestinal feces. From this Fusodobacterium K-60, a ginsenoside Rb1-metabolizing enzyme, beta-glucosidase, has been purified. The enzyme was purified to apparent homogeneity by a combination of butyl-Toyopearl, hydroxyapatite ultragel, Q-Sepharose, and Sephacryl S-300 HR column chromatographies with a final specific activity of 1.52 micromol/min/mg. It had optimal activity at pH 7.0 and 40 degrees C. The molecular mass of this purified enzyme was 320 kDa, with 4 identical subunits (80 kDa). The purified enzyme activity was inhibited by Ba++, Fe++, and some agents that modify cysteine residues. This enzyme strongly hydrolyzed sophorose, followed by p-nitrophenyl beta-D-glucopyranoside, esculin, and ginsenoside Rb1. However, this enzyme did not change 20-O-beta-D-glucopyranosyl-20(S)-protopanaxadiol (IH-901) to 20(S)-protopanaxadiol, while it weakly changed ginsenoside Rb1 to IH-901. These findings suggest that the Fusobacterial beta-glucosidase is a novel enzyme transforming ginsenoside Rb1.


Subject(s)
Fusobacterium/enzymology , Intestines/microbiology , Saponins/metabolism , beta-Glucosidase/isolation & purification , Ginsenosides , Humans , Hydrolysis , Substrate Specificity , beta-Glucosidase/metabolism
12.
Appl Microbiol Biotechnol ; 57(3): 263-73, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11759672

ABSTRACT

Anaerobic bacteria from the orders Clostridiales and Fusobacteriales are able to ferment glutamate by at least five different pathways, most of which contain enzymes with radicals in their catalytic pathways. The first two pathways proceed to ammonia, acetate and pyruvate via the coenzyme B12-dependent glutamate mutase, which catalyses the re-arrangement of the linear carbon skeleton to that of the branched-chain amino acid (2S,3S)-3-methylaspartate. Pyruvate then disproportionates either to CO2 and butyrate or to CO2, acetate and propionate. In the third pathway, glutamate again is converted to ammonia, CO2, acetate and butyrate. The key intermediate is (R)-2-hydroxyglutaryl-CoA, which is dehydrated to glutaconyl-CoA, followed by decarboxylation to crotonyl-CoA. The unusual dehydratase, containing an iron-sulfur cluster, is activated by an ATP-dependent one-electron reduction. The remaining two pathways require more then one organism for the complete catabolism of glutamate to short chain fatty acids. Decarboxylation of glutamate leads to 4-aminobutyrate, which is fermented by a second organism via the fourth pathway to acetate and butyrate, again mediated by an unusual dehydratase which catalyses the reversible dehydration of 4-hydroxybutyryl-CoA to crotonyl-CoA. The fifth pathway is the only one without decarboxylation, since the gamma-carboxylate of glutamate is reduced to the amino group of delta-aminovalerate, which then is fermented to acetate, propionate and valerate. The pathway involves the oxidative dehydration of 5-hydroxyvaleryl-CoA to 2,4-pentadienoyl-CoA followed by reduction to 3-pentenoyl-CoA and isomerisation to 2-pentenoyl-CoA.


Subject(s)
Clostridium/metabolism , Fusobacterium/metabolism , Glutamic Acid/metabolism , Carboxy-Lyases/metabolism , Clostridium/enzymology , Fermentation , Fusobacterium/enzymology , Hydro-Lyases/metabolism , Intramolecular Transferases/metabolism , Oxidoreductases/metabolism , Vitamin B 12/metabolism
13.
Am J Obstet Gynecol ; 180(2 Pt 1): 378-80, 1999 Feb.
Article in English | MEDLINE | ID: mdl-9988804

ABSTRACT

OBJECTIVE: A total of 131 anaerobes isolated from amniotic fluid with preterm premature rupture of membranes and stored were examined for elastolytic activity by the method described by Williams et al (Lett Appl Microbiol 1988;7:173-6). STUDY DESIGN: Each strain was spot inoculated on a Columbia blood agar plate containing 1% solubilized elastin and incubated for 5 days under anaerobic conditions. Undigested elastin was precipitated by flooding trichloroacetic acid solution onto the plate, and a clear zone was visible as the elastolytic reaction around the spot of bacterial growth. RESULTS: Ninety-three (71.0%) of 131 organisms showed a positive elastolytic reaction. Eleven of 20 strains (55.0%) of Peptostreptococcus magnus, 9 of 18 strains (50.0%) of Peptostreptococcus micros, 12 of 12 strains (100.0%) of Fusobacterium nucleatum, 15 of 28 strains (53.6%) of Bacteroides fragilis, 8 of 15 strains (53.3%) of Bacteroides thetaiotaomicron, and 38 of 38 strains (100.0%) of Prevotella bivia were elastolytic. CONCLUSION: Anaerobic bacterial species prevalent in the normal vaginal flora that were isolated from amniotic fluid of women with preterm rupture of membranes produced elastolytic activity, plausibly inducing the destruction of host constitutive components.


Subject(s)
Amniotic Fluid/microbiology , Bacteria, Anaerobic/enzymology , Fetal Membranes, Premature Rupture/microbiology , Pancreatic Elastase/metabolism , Bacteria, Anaerobic/isolation & purification , Bacteroides/enzymology , Bacteroides/isolation & purification , Bacteroides fragilis/enzymology , Bacteroides fragilis/isolation & purification , Culture Media , Elastin/metabolism , Female , Fusobacterium/enzymology , Fusobacterium/isolation & purification , Humans , Peptostreptococcus/enzymology , Peptostreptococcus/isolation & purification , Pregnancy , Prevotella/enzymology , Prevotella/isolation & purification
14.
J Bacteriol ; 179(13): 4129-37, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9209025

ABSTRACT

The Fusobacterium mortiferum malH gene, encoding 6-phospho-alpha-glucosidase (maltose 6-phosphate hydrolase; EC 3.2.1.122), has been isolated, characterized, and expressed in Escherichia coli. The relative molecular weight of the polypeptide encoded by malH (441 residues; Mr of 49,718) was in agreement with the estimated value (approximately 49,000) obtained by sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the enzyme purified from F. mortiferum. The N-terminal sequence of the MalH protein obtained by Edman degradation corresponded to the first 32 amino acids deduced from the malH sequence. The enzyme produced by the strain carrying the cloned malH gene cleaved [U-14C]maltose 6-phosphate to glucose 6-phosphate (Glc6P) and glucose. The substrate analogs p-nitrophenyl-alpha-D-glucopyranoside 6-phosphate (pNP alphaGlc6P) and 4-methylumbelliferyl-alpha-D-glucopyranoside 6-phosphate (4MU alphaGlc6P) were hydrolyzed to yield Glc6P and the yellow p-nitrophenolate and fluorescent 4-methylumbelliferyl aglycons, respectively. The 6-phospho-alpha-glucosidase expressed in E. coli (like the enzyme purified from F. mortiferum) required Fe2+, Mn2+, Co2+, or Ni2+ for activity and was inhibited in air. Synthesis of maltose 6-phosphate hydrolase from the cloned malH gene in E. coli was modulated by addition of various sugars to the growth medium. Computer-based analyses of MalH and its homologs revealed that the phospho-alpha-glucosidase from F. mortiferum belongs to the seven-member family 4 of the glycosylhydrolase superfamily. The cloned 2.2-kb Sau3AI DNA fragment from F. mortiferum contained a second partial open reading frame of 83 residues (designated malB) that was located immediately upstream of malH. The high degree of sequence identity of MalB with IIB(Glc)-like proteins of the phosphoenol pyruvate dependent:sugar phosphotransferase system suggests participation of MalB in translocation of maltose and related alpha-glucosides in F. mortiferum.


Subject(s)
Bacterial Proteins , Fusobacterium/enzymology , alpha-Glucosidases/genetics , Amino Acid Sequence , Base Sequence , Chromosome Mapping , Cloning, Molecular , DNA, Bacterial , Escherichia coli/metabolism , Gene Expression , Genomic Library , Glucosidases/metabolism , Maltose , Molecular Sequence Data , Multigene Family , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Sequence Analysis, DNA , Sequence Homology, Amino Acid , alpha-Glucosidases/classification , alpha-Glucosidases/metabolism
15.
J Bacteriol ; 179(5): 1636-45, 1997 Mar.
Article in English | MEDLINE | ID: mdl-9045824

ABSTRACT

6-Phosphoryl-beta-D-glucopyranosyl:6-phosphoglucohydrolase (P-beta-glucosidase, EC 3.2.1.86) has been purified from Fusobacterium mortiferum. Assays for enzyme activity and results from Western immunoblots showed that P-beta-glucosidase (Mr, 53,000; pI, 4.5) was induced by growth of F. mortiferum on beta-glucosides. The novel chromogenic and fluorogenic substrates, p-nitrophenyl-beta-D-glucopyranoside-6-phosphate (pNPbetaGlc6P) and 4-methylumbelliferyl-beta-D-glucopyranoside-6-phosphate (4MUbetaGlc6P), respectively, were used for the assay of P-beta-glucosidase activity. The enzyme hydrolyzed several P-beta-glucosides, including the isomeric disaccharide phosphates cellobiose-6-phosphate, gentiobiose-6-phosphate, sophorose-6-phosphate, and laminaribiose-6-phosphate, to yield glucose-6-phosphate and appropriate aglycons. The kinetic parameters for each substrate are reported. P-beta-glucosidase from F. mortiferum was inactivated by 6-phosphoglucono-delta-lactone (P-glucono-delta-lactone) derived via oxidation of glucose 6-phosphate. The pbgA gene that encodes P-beta-glucosidase from F. mortiferum has been cloned and sequenced. The first 42 residues deduced from the nucleotide sequence matched those determined for the N terminus by automated Edman degradation of the purified enzyme. From the predicted sequence of 466 amino acids, two catalytically important glutamyl residues have been identified. Comparative alignment of the amino acid sequences of P-beta-glucosidase from Escherichia coli and F. mortiferum indicates potential binding sites for the inhibitory P-glucono-delta-lactone to the enzyme from F. mortiferum.


Subject(s)
Fusobacterium/enzymology , Gluconates/pharmacology , Glucosephosphate Dehydrogenase/metabolism , Glucosidases/genetics , Glucosidases/isolation & purification , Lactones/pharmacology , Amino Acid Sequence , Binding Sites , Cloning, Molecular , Fusobacterium/genetics , Gluconates/metabolism , Glucosidases/antagonists & inhibitors , Glucosidases/metabolism , Glucosides/metabolism , Kinetics , Lactones/metabolism , Molecular Sequence Data , Molecular Weight , Sequence Alignment , Substrate Specificity
16.
Arch Oral Biol ; 42(12): 827-34, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9460536

ABSTRACT

The ability of three Porphyromonas spp., seven Prevotella spp., seven Fusobacterium spp. and two related Bacteroides spp. (B. levii and B. macacae) to degrade an extensive range of synthetic endo-, amino- and diamino peptidase substrates linked to the fluorescent leaving group 7-amido-4-methylcoumarin (NHMec) was investigated. Many more species than was previously recognized exhibited peptidase activities, albeit at lower levels than those already described for Porphyromonas gingivalis. Detection of chymotrypsin-like activity was dependent on which of three NHMec-linked substrates was used, but all species exhibited degradative activity with at least one of these substrates. Elastase-like activity was detected in all species though not all species reacted with each of the elastase substrates. Glycylprolyl peptidase activity was detected in all of the species tested with the exception of F. mortiferum, F. gonidiaformans, F. naviforme and F. necrophorum. While the detection of peptidase activities does not appear to be useful for the differentiation of species within the genera Bacteroides and Prevotella, its ability to differentiate species of the genus Porphyromonas or Fusobacterium warrants further investigation.


Subject(s)
Endopeptidases/metabolism , Fusobacterium/enzymology , Porphyromonas/enzymology , Prevotella/enzymology , Alanine/metabolism , Aminopeptidases/metabolism , Bacteroides/classification , Bacteroides/enzymology , Chymotrypsin/metabolism , Coumarins , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism , Fluorescent Dyes , Fusobacterium/classification , Fusobacterium necrophorum/metabolism , Humans , Indicators and Reagents , Lysine/metabolism , Mouth/microbiology , Oligopeptides , Pancreatic Elastase/metabolism , Phenylalanine/metabolism , Porphyromonas/classification , Porphyromonas gingivalis/enzymology , Prevotella/classification , Proline/metabolism , Tyrosine/metabolism , Virulence
17.
J Bacteriol ; 177(9): 2505-12, 1995 May.
Article in English | MEDLINE | ID: mdl-7730284

ABSTRACT

6-Phosphoryl-O-alpha-D-glucopyranosyl:6-phosphoglucohydrolase (6-phospho-alpha-glucosidase) has been purified from Fusobacterium mortiferum ATCC 25557. p-Nitrophenyl-alpha-D-glucopyranoside 6-phosphate (pNP alpha Glc6P) served as the chromogenic substrate for detection and assay of enzyme activity. The O2-sensitive, metal-dependent phospho-alpha-glucosidase was stabilized during purification by inclusion of dithiothreitol and Mn2+ ion in chromatography buffers. Various 6-phosphoryl-O-alpha-linked glucosides, including maltose 6-phosphate, pNP alpha Glc6P, trehalose 6-phosphate, and sucrose 6-phosphate, were hydrolyzed by the enzyme to yield D-glucose 6-phosphate and aglycone moieties in a 1:1 molar ratio. 6-Phospho-alpha-glucosidase (M(r) of approximately 49,000; pI of approximately 4.9) is activated by Fe2+, Mn2+, Co2+, and Ni2+, and the maximum rate of pNP alpha Glc6P hydrolysis occurs at 40 degrees C within the pH range 7.0 to 7.5. The sequence of the first 32 amino acids of 6-phospho-alpha-glucosidase exhibits 67% identity (90% similarity) to that deduced for the N terminus of a putative phospho-beta-glucosidase (designated ORF f212) encoded by glvG in Escherichia coli. Western blots involving highly specific polyclonal antibody against 6-phospho-alpha-glucosidase and spectrophotometric analyses with pNP alpha Glc6P revealed only low levels of the enzyme in glucose-, mannose-, or fructose-grown cells of F. mortiferum. Synthesis of 6-phospho-alpha-glucosidase increased dramatically during growth of the organism on alpha-glucosides, such as maltose, alpha-methylglucoside, trehalose, turanose, and palatinose.


Subject(s)
Fusobacterium/enzymology , Glucosephosphates/metabolism , Glucosides/metabolism , Sugar Phosphates/metabolism , alpha-Glucosidases/metabolism , Amino Acid Sequence , Carbohydrate Sequence , Enzyme Stability , Isoelectric Focusing , Models, Biological , Molecular Sequence Data , Sequence Analysis , Sequence Homology, Amino Acid , Substrate Specificity , alpha-Glucosidases/biosynthesis , alpha-Glucosidases/isolation & purification
18.
J Bacteriol ; 176(11): 3250-6, 1994 Jun.
Article in English | MEDLINE | ID: mdl-8195080

ABSTRACT

Phosphoenolypyruvate-dependent maltose:phosphotransferase activity was induced in cells of Fusobacterium mortiferum ATCC 25557 during growth on maltose. The disaccharide was rapidly metabolized by washed cells maintained under anaerobic conditions, but fermentation ceased immediately upon exposure of the cell suspension to air. Coincidentally, high levels of a phosphorylated derivative accumulated within the cells. Chemical and enzymatic analyses, in conjunction with data from 1H, 13C, and 31P nuclear magnetic resonance spectroscopy, established the structure of the purified compound as 6-O-phosphoryl-alpha-D-glucopyranosyl-(1-4)-D-glucose (maltose 6-phosphate). A method for the preparation of substrate amounts of this commercially unavailable disaccharide phosphate is described. Permeabilized cells of F. mortiferum catalyzed the phosphoenolpyruvate-dependent phosphorylation of maltose under aerobic conditions. However, the hydrolysis of maltose 6-phosphate (to glucose 6-phosphate and glucose) by permeabilized cells or cell-free preparations required either an anaerobic environment or addition of dithiothreitol to aerobic reaction mixtures. The first step in dissimilation of the phosphorylated disaccharide appears to be catalyzed by an oxygen-sensitive maltose 6-phosphate hydrolase. Cells of F. mortiferum, grown previously on maltose, fermented a variety of alpha-linked glucosides, including maltose, turanose, palatinose, maltitol, alpha-methylglucoside, trehalose, and isomaltose. Conversely, cells grown on the separate alpha-glucosides also metabolized maltose. For this anaerobic pathogen, we suggest that the maltose:phosphotransferase and maltose 6-phosphate hydrolase catalyze the phosphorylative translocation and cleavage not only of maltose but also of structurally analogous alpha-linked glucosides.


Subject(s)
Fusobacterium/enzymology , Maltose/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Sugar Phosphates/isolation & purification , Aerobiosis , Anaerobiosis , Carbohydrate Sequence , Cell Membrane Permeability , Enzyme Induction , Glucosides/metabolism , Hydrolysis , Molecular Sequence Data , Phosphorylation , Stereoisomerism , Sugar Phosphates/metabolism
20.
FEMS Microbiol Lett ; 107(2-3): 205-10, 1993 Mar 01.
Article in English | MEDLINE | ID: mdl-8097174

ABSTRACT

A repeated DNA sequence was isolated from Fusobacterium necrophorum biotype AB, strain FnS1. The repeated sequence shared considerable homology with the transposase gene from the Pseudomonas syringiae insertion sequence IS801. The repeat sequence was used together with a 16S ribosomal RNA gene probe to type F. necrophorum isolates using restriction fragment length polymorphisms. The probes revealed differences between several clinical isolates and will be useful tools to study the epidemiology of ovine foot abscess and other diseases caused by F. necrophorum.


Subject(s)
DNA, Bacterial/genetics , Fusobacterium/genetics , RNA, Ribosomal, 16S/genetics , Repetitive Sequences, Nucleic Acid , Amino Acid Sequence , Bacterial Proteins/genetics , Base Sequence , Fusobacterium/enzymology , Molecular Sequence Data , Nucleotidyltransferases/genetics , Polymorphism, Restriction Fragment Length , RNA Probes , Sequence Homology, Amino Acid , Transposases
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