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1.
J Exp Bot ; 71(1): 344-355, 2020 01 01.
Article in English | MEDLINE | ID: mdl-31536614

ABSTRACT

Wheat (Triticum aestivum) is essential for global food security. Rhizoctonia cerealis is the causal pathogen of sharp eyespot, an important disease of wheat. GATA proteins in model plants have been implicated in growth and development; however, little is known about their roles in immunity. Here, we report a defence role for a wheat LLM-domain-containing B-GATA transcription factor, TaGATA1, against R. cerealis infection and explore the underlying mechanism. Through transcriptomic analysis, TaGATA1 was identified to be more highly expressed in resistant wheat genotypes than in susceptible wheat genotypes. TaGATA1 was located on chromosome 3B and had two homoeologous genes on chromosomes 3A and 3D. TaGATA1 was found to be localized in the nucleus, possessed transcriptional activation activity, and bound to GATA-core cis-elements. TaGATA1 overexpression significantly enhanced resistance of transgenic wheat to R. cerealis, whereas silencing of TaGATA1 suppressed the resistance. Quantitative reverse transcription-PCR and ChIP-qPCR results indicated that TaGATA1 directly bound to and activated certain defence genes in host immune response to R. cerealis. Collectively, TaGATA1 positively regulates immune responses to R. cerealis through activating expression of defence genes in wheat. This study reveals a new function of plant GATAs in immunity and provides a candidate gene for improving crop resistance to R. cerealis.


Subject(s)
Basidiomycota/physiology , GATA1 Transcription Factor/genetics , Plant Diseases/immunology , Plant Immunity/genetics , Plant Proteins/genetics , Triticum/genetics , Amino Acid Sequence , Disease Resistance/immunology , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Triticum/metabolism , Triticum/microbiology
2.
Mol Cell Biol ; 36(16): 2151-67, 2016 08 15.
Article in English | MEDLINE | ID: mdl-27215385

ABSTRACT

GATA1 organizes erythroid and megakaryocytic differentiation by orchestrating the expression of multiple genes that show diversified expression profiles. Here, we demonstrate that GATA1 monovalently binds to a single GATA motif (Single-GATA) while a monomeric GATA1 and a homodimeric GATA1 bivalently bind to two GATA motifs in palindromic (Pal-GATA) and direct-repeat (Tandem-GATA) arrangements, respectively, and form higher stoichiometric complexes on respective elements. The amino-terminal zinc (N) finger of GATA1 critically contributes to high occupancy of GATA1 on Pal-GATA. GATA1 lacking the N finger-DNA association fails to trigger a rate of target gene expression comparable to that seen with the wild-type GATA1, especially when expressed at low level. This study revealed that Pal-GATA and Tandem-GATA generate transcriptional responses from GATA1 target genes distinct from the response of Single-GATA. Our results support the notion that the distinct alignments in binding motifs are part of a critical regulatory strategy that diversifies and modulates transcriptional regulation by GATA1.


Subject(s)
Erythroid Cells/cytology , GATA1 Transcription Factor/metabolism , Megakaryocytes/cytology , Transcription Factors/chemistry , Animals , Binding Sites , Cell Differentiation , Cells, Cultured , Erythroid Cells/metabolism , GATA1 Transcription Factor/chemistry , Gene Expression Regulation , HEK293 Cells , Humans , Megakaryocytes/metabolism , Mice , Molecular Conformation , Protein Binding , Transcription Factors/metabolism
3.
Protein Sci ; 24(10): 1649-59, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26234528

ABSTRACT

The transcription factor GATA1 helps regulate the expression of thousands of genes involved in blood development, by binding to single or double GATA sites on DNA. An important part of gene activation is chromatin looping, the bringing together of DNA elements that lie up to many thousands of basepairs apart in the genome. It was recently suggested, based on studies of the closely related protein GATA3, that GATA-mediated looping may involve interactions of each of two zinc fingers (ZF) with distantly spaced DNA elements. Here we present a structure of the GATA1 ZF region bound to pseudopalindromic double GATA site DNA, which is structurally equivalent to a recently-solved GATA3-DNA complex. However, extensive analysis of GATA1-DNA binding indicates that although the N-terminal ZF (NF) can modulate GATA1-DNA binding, under physiological conditions the NF binds DNA so poorly that it cannot play a direct role in DNA-looping. Rather, the ability of the NF to stabilize transcriptional complexes through protein-protein interactions, and thereby recruit looping factors such as Ldb1, provides a more compelling model for GATA-mediated looping.


Subject(s)
DNA/metabolism , GATA1 Transcription Factor/metabolism , Base Sequence , Binding Sites , Crystallography, X-Ray , DNA/chemistry , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/metabolism , GATA1 Transcription Factor/chemistry , LIM Domain Proteins/chemistry , LIM Domain Proteins/metabolism , Models, Biological , Transcription Factors/chemistry , Transcription Factors/metabolism
4.
Mol Cell Biol ; 35(10): 1825-37, 2015 May.
Article in English | MEDLINE | ID: mdl-25755285

ABSTRACT

GATA1 is a key transcription factor for erythropoiesis. GATA1 gene expression is strictly regulated at the transcriptional level. While the regulatory mechanisms governing mouse Gata1 (mGata1) gene expression have been studied extensively, how expression of the human GATA1 (hGATA1) gene is regulated remains to be elucidated. To address this issue, we generated hGATA1 bacterial artificial chromosome (BAC) transgenic mouse lines harboring a 183-kb hGATA1 locus covering the hGATA1 exons and distal flanking sequences. Transgenic hGATA1 expression coincides with endogenous mGata1 expression and fully rescues hematopoietic deficiency in mGata1 knockdown mice. The transgene exhibited copy number-dependent and integration position-independent expression of hGATA1, indicating the presence of chromatin insulator activity within the transgene. We found a novel insulator element at 29 kb 5' to the hGATA1 gene and refer to this element as the 5' CCCTC-binding factor (CTCF) site. Substitution mutation of the 5' CTCF site in the hGATA1 BAC disrupted the chromatin architecture and led to a reduction of hGATA1 expression in splenic erythroblasts under conditions of stress erythropoiesis. Our results demonstrate that expression of the hGATA1 gene is regulated through the chromatin architecture organized by 5' CTCF site-mediated intrachromosomal interactions in the hGATA1 locus.


Subject(s)
Chromosomes/genetics , Erythroblasts/metabolism , GATA1 Transcription Factor/genetics , Insulator Elements , Spleen/cytology , Animals , Binding Sites , CCCTC-Binding Factor , Cells, Cultured , Chromatin/physiology , Chromosomes, Artificial, Bacterial/genetics , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/metabolism , Genetic Vectors/genetics , Humans , K562 Cells , Mice , Mice, Transgenic , Repressor Proteins/metabolism , Spleen/metabolism
5.
Int J Hematol ; 100(5): 417-24, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24638828

ABSTRACT

GATA transcription factor family members GATA1 and GATA2 play crucial roles in the regulation of lineage-restricted genes during erythroid differentiation. GATA1 is indispensable for survival and terminal differentiation of erythroid, megakaryocytic and eosinophilic progenitors, whereas GATA2 regulates proliferation and maintenance of hematopoietic stem and progenitor cells. Expression levels of GATA1 and GATA2 are primarily regulated at the transcriptional level through auto- and reciprocal regulatory networks formed by these GATA factors. The dynamic and strictly controlled change of expression from GATA2 to GATA1 during erythropoiesis has been referred to as GATA factor switching, which plays a crucial role in erythropoiesis. The regulatory network comprising GATA1 and GATA2 gives rise to the stage-specific changes in Gata1 and Gata2 gene expression during erythroid differentiation, which ensures specific expression of early and late erythroid genes at each stage. Recent studies have also shed light on the genome-wide binding profiles of GATA1 and GATA2, and the significance of epigenetic modification of Gata1 gene during erythroid differentiation. This review summarizes the current understanding of network regulation underlying stage-dependent Gata1 and Gata2 gene expressions and the functional contribution of these GATA factors in erythroid differentiation.


Subject(s)
Cell Differentiation/genetics , Erythroid Cells/cytology , Erythroid Cells/metabolism , Erythropoiesis/genetics , GATA1 Transcription Factor/genetics , GATA2 Transcription Factor/genetics , Gene Expression Regulation , Gene Regulatory Networks , Transcription, Genetic , Animals , Binding Sites , Cell Lineage/genetics , GATA1 Transcription Factor/chemistry , GATA2 Transcription Factor/chemistry , Hematopoietic Stem Cells/cytology , Hematopoietic Stem Cells/metabolism , Humans , Protein Binding , Protein Interaction Domains and Motifs , Regulatory Sequences, Nucleic Acid
6.
Blood ; 123(2): 261-70, 2014 Jan 09.
Article in English | MEDLINE | ID: mdl-24255919

ABSTRACT

Promyelocytic leukemia protein (PML) has been implicated as a participant in multiple cellular processes including senescence, apoptosis, proliferation, and differentiation. Studies of PML function in hematopoietic differentiation previously focused principally on its myeloid activities and also indicated that PML is involved in erythroid colony formation. However, the exact role that PML plays in erythropoiesis is essentially unknown. In this report, we found that PML4, a specific PML isoform expressed in erythroid cells, promotes endogenous erythroid genes expression in K562 and primary human erythroid cells. We show that the PML4 effect is GATA binding protein 1 (GATA-1) dependent using GATA-1 knockout/rescued G1E/G1E-ER4 cells. PML4, but not other detected PML isoforms, directly interacts with GATA-1 and can recruit it into PML nuclear bodies. Furthermore, PML4 facilitates GATA-1 trans-activation activity in an interaction-dependent manner. Finally, we present evidence that PML4 enhances GATA-1 occupancy within the globin gene cluster and stimulates cooperation between GATA-1 and its coactivator p300. These results demonstrate that PML4 is an important regulator of GATA-1 and participates in erythroid differention by enhancing GATA-1 trans-activation activity.


Subject(s)
Cell Differentiation/physiology , Erythroid Cells/cytology , Erythroid Cells/metabolism , GATA1 Transcription Factor/genetics , Nuclear Proteins/metabolism , Transcription Factors/metabolism , Transcriptional Activation , Tumor Suppressor Proteins/metabolism , Acetylation , E1A-Associated p300 Protein/metabolism , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/metabolism , Gene Expression , Humans , K562 Cells , Nuclear Proteins/chemistry , Nuclear Proteins/genetics , Promyelocytic Leukemia Protein , Protein Binding , Protein Interaction Domains and Motifs , Protein Isoforms , Trans-Activators/genetics , Trans-Activators/metabolism , Transcription Factors/chemistry , Transcription Factors/genetics , Transcription, Genetic , Tumor Suppressor Proteins/chemistry , Tumor Suppressor Proteins/genetics , Zinc Fingers
7.
Genes Cells ; 18(10): 886-98, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23890289

ABSTRACT

GATA1 is a transcription factor essential for erythropoiesis and megakaryopoiesis. It has been found that Gata1 gene knockdown heterozygous female (Gata1(G1.05/+)) mice spontaneously develop erythroblastic leukemias. In this study, we have generated a novel Gata1 knockdown erythroblastic cell line, designated GAK14, from the leukemia cells in the Gata1(G1.05/+) mice. Although GAK14 cells maintain immature phenotype on OP9 stromal cells in the presence of erythropoietin and stem cell factor, the cells produce Gr-1-, Mac1-, B220-, CD3e- or CD49b-positive hematopoietic cells when co-cultured with DAS104-8 feeder cells. However, GAK14 cells did not produce erythroid and megakaryocytic lineages, perhaps due to the absence of GATA1. Indeed, GAK14 cells became capable of differentiating into mature erythroid cells when complemented with full-length GATA1 and co-cultured with fetal liver-derived FLS5 stromal cells. This differentiation potential was impaired when GATA1 lacking the N-terminal domain was complemented. The N-terminal domain is known to contribute to the pathogenesis of transient abnormal myelopoiesis and acute megakaryoblastic leukemia related to Down syndrome. These results thus showed that GAK14 cells will serve as a powerful tool for dissecting domain function of GATA1 and that the GATA1 N-terminal domain is essential for the erythroid differentiation of GAK14 cells.


Subject(s)
Amino Acids/genetics , Cell Line, Tumor , Erythroid Precursor Cells/physiology , Erythropoiesis , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/metabolism , Leukemia, Erythroblastic, Acute , Animals , Cell Lineage , Coculture Techniques , Erythroid Precursor Cells/metabolism , Female , GATA1 Transcription Factor/genetics , Gene Expression , Gene Knockdown Techniques , Megakaryocyte Progenitor Cells/physiology , Mice , Myelopoiesis , Protein Structure, Tertiary
8.
Mol Cell Biol ; 33(16): 3064-76, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23732910

ABSTRACT

Ikaros (Ik) is a critical regulator of hematopoietic gene expression. Here, we established that the Ik interactions with GATA transcription factors and cyclin-dependent kinase 9 (Cdk9), a component of the positive transcription elongation factor b (P-TEFb), are required for transcriptional activation of Ik target genes. A detailed dissection of Ik-GATA and Ik-Cdk9 protein interactions indicated that the C-terminal zinc finger domain of Ik interacts directly with the C-terminal zinc fingers of GATA1, GATA2, and GATA3, whereas the N-terminal zinc finger domain of Ik is required for interaction with the kinase and T-loop domains of Cdk9. The relevance of these interactions was demonstrated in vivo in COS-7 and primary hematopoietic cells, in which Ik facilitated Cdk9 and GATA protein recruitment to gene promoters and transcriptional activation. Moreover, the oncogenic isoform Ik6 did not efficiently interact with Cdk9 or GATA proteins in vivo and perturbed Cdk9/P-TEFb recruitment to Ik target genes, thereby affecting transcription elongation. Finally, characterization of a novel nuclear Ik isoform revealed that Ik exon 6 is dispensable for interactions with Mi2 and GATA proteins but is essential for the Cdk9 interaction. Thus, Ik is central to the Ik-GATA-Cdk9 regulatory network, which is broadly utilized for gene regulation in hematopoietic cells.


Subject(s)
Cyclin-Dependent Kinase 9/metabolism , GATA1 Transcription Factor/metabolism , GATA2 Transcription Factor/metabolism , GATA3 Transcription Factor/metabolism , Hematopoiesis , Ikaros Transcription Factor/metabolism , Transcriptional Activation , Animals , Cell Line , Cells, Cultured , Cyclin-Dependent Kinase 9/chemistry , GATA1 Transcription Factor/chemistry , GATA2 Transcription Factor/chemistry , GATA3 Transcription Factor/chemistry , Ikaros Transcription Factor/chemistry , Mice , Protein Interaction Domains and Motifs , Protein Interaction Maps , Protein Isoforms/chemistry , Protein Isoforms/metabolism
9.
Blood ; 121(26): 5218-27, 2013 Jun 27.
Article in English | MEDLINE | ID: mdl-23704091

ABSTRACT

Missense mutations in transcription factor GATA1 underlie a spectrum of congenital red blood cell and platelet disorders. We investigated how these alterations cause distinct clinical phenotypes by combining structural, biochemical, and genomic approaches with gene complementation systems that examine GATA1 function in biologically relevant cellular contexts. Substitutions that disrupt FOG1 cofactor binding impair both gene activation and repression and are associated with pronounced clinical phenotypes. Moreover, clinical severity correlates with the degree of FOG1 disruption. Surprisingly, 2 mutations shown to impair DNA binding of GATA1 in vitro did not measurably affect in vivo target gene occupancy. Rather, one of these disrupted binding to the TAL1 complex, implicating it in diseases caused by GATA1 mutations. Diminished TAL1 complex recruitment mainly impairs transcriptional activation and is linked to relatively mild disease. Notably, different substitutions at the same amino acid can selectively inhibit TAL1 complex or FOG1 binding, producing distinct cellular and clinical phenotypes. The structure-function relationships elucidated here were not predicted by prior in vitro or computational studies. Thus, our findings uncover novel disease mechanisms underlying GATA1 mutations and highlight the power of gene complementation assays for elucidating the molecular basis of genetic diseases.


Subject(s)
Basic Helix-Loop-Helix Transcription Factors/metabolism , GATA1 Transcription Factor/genetics , Genetic Complementation Test , Hematologic Diseases/etiology , Mutation, Missense/genetics , Nuclear Proteins/metabolism , Proto-Oncogene Proteins/metabolism , Transcription Factors/metabolism , Animals , Basic Helix-Loop-Helix Transcription Factors/chemistry , Basic Helix-Loop-Helix Transcription Factors/genetics , Biomarkers/metabolism , Blotting, Western , Cell Differentiation , Cell Proliferation , Chromatin Immunoprecipitation , Erythroid Cells/cytology , Erythroid Cells/metabolism , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/metabolism , Gene Expression Profiling , Hematologic Diseases/metabolism , Hematologic Diseases/pathology , Humans , Megakaryocytes/cytology , Megakaryocytes/metabolism , Mice , Nuclear Proteins/chemistry , Nuclear Proteins/genetics , Oligonucleotide Array Sequence Analysis , Proto-Oncogene Proteins/chemistry , Proto-Oncogene Proteins/genetics , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Structure-Activity Relationship , T-Cell Acute Lymphocytic Leukemia Protein 1 , Transcription Factors/chemistry , Transcription Factors/genetics
10.
PLoS One ; 8(5): e64269, 2013.
Article in English | MEDLINE | ID: mdl-23717580

ABSTRACT

We previously reported that IL-3 signaling induces phosphorylation of GATA-1 at the serine²6 position, which contributes to IL-3-mediated anti-apoptotic response. Here, we demonstrate that phosphorylation of GATA-1 at serine²6 is also transiently induced in cells of the erythroid lineage (primary erythroblasts and erythrocyte-committed progenitors [EPs]) by erythropoietin (EPO), the principal cytokine regulating erythropoiesis. To examine whether phosphorylation of GATA-1 at serine²6 would have any impact on erythropoiesis, mutant mice carrying either a glutamic acid (GATA-1(S26E)) or alanine (GATA-1(S26A)) substitution at serine²6 were generated. Neither GATA-1(S26E) nor GATA-1(S26A) mice showed any significant difference from control mice in peripheral blood cell composition under either steady state or stress conditions. The erythroblast differentiation in both mutant mice also appeared to be normal. However, a moderate reduction in the CFU-E progenitor population was consistently observed in the bone marrow of GATA-1(S26E), but not GATA-1(S26A) mice, suggesting that such defect was compensated for within the bone marrow. Surprisingly, reduced CFU-E progenitor population in GATA-1(S26E) mice was mainly due to EPO-induced growth suppression of GATA-1(S26E) EPs, albeit in the absence of EPO these cells manifested a survival advantage. Further analyses revealed that EPO-induced growth suppression of GATA-1(S26E) EPs was largely due to the proliferation block resulted from GATA-1(S26E)-mediated transcriptional activation of the gene encoding the cell cycle inhibitor p21(Waf1/Cip1). Taken together, these results suggest that EPO-induced transient phosphorylation of GATA-1 at serine²6 is dispensable for erythropoiesis. However, failure to dephosphorylate this residue following its transient phosphorylation significantly attenuates the colony-forming activity of EPs.


Subject(s)
Erythrocytes/cytology , Erythropoiesis , GATA1 Transcription Factor/metabolism , Serine/metabolism , Stem Cells/cytology , Animals , Base Sequence , Blotting, Western , DNA Primers , Erythropoietin/metabolism , GATA1 Transcription Factor/chemistry , Male , Mice , Mice, Inbred C57BL , Phosphorylation
11.
Int J Biochem Cell Biol ; 44(2): 423-9, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22138223

ABSTRACT

Polo-like kinase 2 (Plk2) is a member of the serine/threonine protein kinase family involved in cell-cycle regulation and cellular response to stresses. It is of great interest to investigate the molecular mechanisms that control the expression of Plk2. Here, using real-time PCR and Western blot assays, we show that trichostatin A (TSA), a histone deacetylase inhibitor, upregulated Plk2 mRNA and protein expression in the human osteosarcoma MG-63 cell line. Luciferase activity analysis of the truncated Plk2 promoter indicated that the region from -1220 to -830 of the Plk2 promoter was sensitive to TSA. Moreover, using the electrophoresis mobility shift assay and chromatin immunoprecipitation assay, we identified two GATA-1 responsive elements at positions -1051 and -949, to which GATA-1 binding was enhanced by TSA under in vitro and in vivo conditions. Immunoprecipitation and Western blot showed that the levels of acetylated GATA-1 were increased with TSA in MG-63 cells, consistent with their binding affinities to the GATA-1 responsive elements. In summary, these data demonstrate that acetylation plays a crucial role in Plk2 expression and acetylation of GATA-1 by TSA treatment may upregulate their DNA-binding affinities, resulting in the activation of Plk2 promoter. These results may contribute to the understanding of the molecular mechanism of Plk2 regulation.


Subject(s)
GATA1 Transcription Factor/metabolism , Protein Serine-Threonine Kinases/genetics , Acetylation/drug effects , Cell Line, Tumor , GATA1 Transcription Factor/chemistry , Gene Expression/drug effects , Humans , Hydroxamic Acids/administration & dosage , Hydroxamic Acids/pharmacology , Osteosarcoma , Protein Serine-Threonine Kinases/metabolism , Transcriptional Activation/drug effects , Up-Regulation/drug effects
12.
Proc Natl Acad Sci U S A ; 108(35): 14443-8, 2011 Aug 30.
Article in English | MEDLINE | ID: mdl-21844373

ABSTRACT

The control of red blood cell and megakaryocyte development by the regulatory protein GATA1 is a paradigm for transcriptional regulation of gene expression in cell lineage differentiation and maturation. Most GATA1-regulated events require GATA1 to bind FOG1, and essentially all GATA1-activated genes are cooccupied by a TAL1/E2A/LMO2/LDB1 complex; however, it is not known whether FOG1 and TAL1/E2A/LMO2/LDB1 are simultaneously recruited by GATA1. Our structural data reveal that the FOG1-binding domain of GATA1, the N finger, can also directly contact LMO2 and show that, despite the small size (< 50 residues) of the GATA1 N finger, both FOG1 and LMO2 can simultaneously bind this domain. LMO2 in turn can simultaneously contact both GATA1 and the DNA-binding protein TAL1/E2A at bipartite E-box/WGATAR sites. Taken together, our data provide the first structural snapshot of multiprotein complex formation at GATA1-dependent genes and support a model in which FOG1 and TAL1/E2A/LMO2/LDB1 can cooccupy E-box/WGATAR sites to facilitate GATA1-mediated activation of gene activation.


Subject(s)
DNA-Binding Proteins/chemistry , GATA1 Transcription Factor/chemistry , Metalloproteins/chemistry , Nuclear Proteins/chemistry , Transcription Factors/chemistry , Transcription, Genetic , Adaptor Proteins, Signal Transducing , Binding, Competitive , DNA/metabolism , DNA-Binding Proteins/metabolism , GATA1 Transcription Factor/metabolism , LIM Domain Proteins , Metalloproteins/metabolism , Models, Anatomic , Nuclear Proteins/metabolism , Protein Structure, Quaternary , Protein Structure, Tertiary , Proto-Oncogene Proteins , Transcription Factors/metabolism
13.
Proc Natl Acad Sci U S A ; 108(22): E159-68, 2011 May 31.
Article in English | MEDLINE | ID: mdl-21536911

ABSTRACT

Acetylation of histones triggers association with bromodomain-containing proteins that regulate diverse chromatin-related processes. Although acetylation of transcription factors has been appreciated for some time, the mechanistic consequences are less well understood. The hematopoietic transcription factor GATA1 is acetylated at conserved lysines that are required for its stable association with chromatin. We show that the BET family protein Brd3 binds via its first bromodomain (BD1) to GATA1 in an acetylation-dependent manner in vitro and in vivo. Mutation of a single residue in BD1 that is involved in acetyl-lysine binding abrogated recruitment of Brd3 by GATA1, demonstrating that acetylation of GATA1 is essential for Brd3 association with chromatin. Notably, Brd3 is recruited by GATA1 to both active and repressed target genes in a fashion seemingly independent of histone acetylation. Anti-Brd3 ChIP followed by massively parallel sequencing in GATA1-deficient erythroid precursor cells and those that are GATA1 replete revealed that GATA1 is a major determinant of Brd3 recruitment to genomic targets within chromatin. A pharmacologic compound that occupies the acetyl-lysine binding pockets of Brd3 bromodomains disrupts the Brd3-GATA1 interaction, diminishes the chromatin occupancy of both proteins, and inhibits erythroid maturation. Together these findings provide a mechanism for GATA1 acetylation and suggest that Brd3 "reads" acetyl marks on nuclear factors to promote their stable association with chromatin.


Subject(s)
Erythroid Cells/cytology , GATA1 Transcription Factor/chemistry , Gene Expression Regulation , Histones/chemistry , Nuclear Proteins/chemistry , Acetylation , Animals , Chromatin/chemistry , Chromatin/metabolism , Chromatin Immunoprecipitation , GATA1 Transcription Factor/metabolism , Hematopoiesis , Mice , Mutation , Protein Binding , Protein Processing, Post-Translational , Protein Structure, Tertiary , Transcription Factors
14.
Mol Cell Biol ; 31(13): 2632-40, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21555453

ABSTRACT

Recent data demonstrate that small synthetic compounds specifically targeting bromodomain proteins can modulate the expression of cancer-related or inflammatory genes. Although these studies have focused on the ability of bromodomains to recognize acetylated histones, it is increasingly becoming clear that histone-like modifications exist on other important proteins, such as transcription factors. However, our understanding of the molecular mechanisms through which these modifications modulate protein function is far from complete. The transcription factor GATA1 can be acetylated at lysine residues adjacent to the zinc finger domains, and this acetylation is essential for the normal chromatin occupancy of GATA1. We have recently identified the bromodomain-containing protein Brd3 as a cofactor that interacts with acetylated GATA1 and shown that this interaction is essential for the targeting of GATA1 to chromatin. Here we describe the structural basis for this interaction. Our data reveal for the first time the molecular details of an interaction between a transcription factor bearing multiple acetylation modifications and its cognate recognition module. We also show that this interaction can be inhibited by an acetyllysine mimic, highlighting the importance of further increasing the specificity of compounds that target bromodomain and extraterminal (BET) bromodomains in order to fully realize their therapeutic potential.


Subject(s)
GATA1 Transcription Factor/metabolism , RNA-Binding Proteins/metabolism , Acetylation , Amino Acid Sequence , GATA1 Transcription Factor/antagonists & inhibitors , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/genetics , Humans , Hydrophobic and Hydrophilic Interactions , Lysine/chemistry , Lysine/genetics , Lysine/metabolism , Molecular Sequence Data , Protein Structure, Secondary , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/genetics , Transcription Factors
15.
Blood ; 117(7): 2146-56, 2011 Feb 17.
Article in English | MEDLINE | ID: mdl-21076045

ABSTRACT

The LIM only protein 2 (LMO2) is a key regulator of hematopoietic stem cell development whose ectopic expression in T cells leads to the onset of acute lymphoblastic leukemia. Through its LIM domains, LMO2 is thought to function as the scaffold for a DNA-binding transcription regulator complex, including the basic helix-loop-helix proteins SCL/TAL1 and E47, the zinc finger protein GATA-1, and LIM-domain interacting protein LDB1. To understand the role of LMO2 in the formation of this complex and ultimately to dissect its function in normal and aberrant hematopoiesis, we solved the crystal structure of LMO2 in complex with the LID domain of LDB1 at 2.4 Å resolution. We observe a largely unstructured LMO2 kept in register by the LID binding both LIM domains. Comparison of independently determined crystal structures of LMO2 reveals large movements around a conserved hinge between the LIM domains. We demonstrate that such conformational flexibility is necessary for binding of LMO2 to its partner protein SCL/TAL1 in vitro and for the function of this complex in vivo. These results, together with molecular docking and analysis of evolutionarily conserved residues, yield the first structural model of the DNA-binding complex containing LMO2, LDB1, SCL/TAL1, and GATA-1.


Subject(s)
DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Metalloproteins/chemistry , Metalloproteins/genetics , Oncogene Proteins/chemistry , Oncogene Proteins/genetics , Oncogenes , Adaptor Proteins, Signal Transducing , Amino Acid Sequence , Amino Acid Substitution , Animals , Animals, Genetically Modified , Base Sequence , Basic Helix-Loop-Helix Transcription Factors/chemistry , Basic Helix-Loop-Helix Transcription Factors/genetics , Basic Helix-Loop-Helix Transcription Factors/metabolism , Binding Sites , Crystallography, X-Ray , DNA Primers/genetics , DNA-Binding Proteins/metabolism , Evolution, Molecular , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/genetics , GATA1 Transcription Factor/metabolism , Gene Expression Regulation, Developmental , HEK293 Cells , Hematopoiesis/genetics , Hematopoiesis/physiology , Humans , In Vitro Techniques , LIM Domain Proteins , Metalloproteins/metabolism , Models, Molecular , Molecular Sequence Data , Multiprotein Complexes , Mutagenesis, Site-Directed , Oncogene Proteins/metabolism , Protein Conformation , Protein Structure, Tertiary , Proto-Oncogene Proteins/chemistry , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins/metabolism , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , Static Electricity , T-Cell Acute Lymphocytic Leukemia Protein 1 , Transcription Factors/chemistry , Transcription Factors/genetics , Transcription Factors/metabolism , Two-Hybrid System Techniques , Zebrafish/embryology , Zebrafish/genetics
16.
Blood ; 116(13): 2356-64, 2010 Sep 30.
Article in English | MEDLINE | ID: mdl-20570862

ABSTRACT

Ldb1 and erythroid partners SCL, GATA-1, and LMO2 form a complex that is required to establish spatial proximity between the ß-globin locus control region and gene and for transcription activation during erythroid differentiation. Here we show that Ldb1 controls gene expression at multiple levels. Ldb1 stabilizes its erythroid complex partners on ß-globin chromatin, even though it is not one of the DNA-binding components. In addition, Ldb1 is necessary for enrichment of key transcriptional components in the locus, including P-TEFb, which phosphorylates Ser2 of the RNA polymerase C-terminal domain for efficient elongation. Furthermore, reduction of Ldb1 results in the inability of the locus to migrate away from the nuclear periphery, which is necessary to achieve robust transcription of ß-globin in nuclear transcription factories. Ldb1 contributes these critical functions at both embryonic and adult stages of globin gene expression. These results implicate Ldb1 as a factor that facilitates nuclear relocation for transcription activation.


Subject(s)
DNA-Binding Proteins/metabolism , Erythropoiesis/physiology , beta-Globins/metabolism , Adaptor Proteins, Signal Transducing , Animals , Basic Helix-Loop-Helix Transcription Factors/chemistry , Basic Helix-Loop-Helix Transcription Factors/metabolism , Cell Differentiation/genetics , Cell Differentiation/physiology , Cell Line , DNA-Binding Proteins/antagonists & inhibitors , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/deficiency , DNA-Binding Proteins/genetics , Embryonic Stem Cells/cytology , Embryonic Stem Cells/metabolism , Erythroid Precursor Cells/cytology , Erythroid Precursor Cells/metabolism , Erythropoiesis/genetics , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/metabolism , Gene Expression Regulation, Developmental , Gene Knockdown Techniques , LIM Domain Proteins , Locus Control Region , Metalloproteins/chemistry , Metalloproteins/metabolism , Mice , Mice, Knockout , Models, Biological , Multiprotein Complexes , Phosphorylation , Positive Transcriptional Elongation Factor B/metabolism , Promoter Regions, Genetic , Protein Stability , Proto-Oncogene Proteins/chemistry , Proto-Oncogene Proteins/metabolism , RNA Polymerase II/chemistry , RNA Polymerase II/metabolism , Serine/chemistry , T-Cell Acute Lymphocytic Leukemia Protein 1 , beta-Globins/deficiency , beta-Globins/genetics
17.
J Biol Chem ; 285(1): 773-83, 2010 Jan 01.
Article in English | MEDLINE | ID: mdl-19854837

ABSTRACT

GATA1 is essential for the differentiation of erythroid cells and megakaryocytes. The Gata1 gene is composed of multiple untranslated first exons and five common coding exons. The erythroid first exon (IE exon) is important for Gata1 gene expression in hematopoietic lineages. Because previous IE exon knockdown analyses resulted in embryonic lethality, less is understood about the contribution of the IE exon to adult hematopoiesis. Here, we achieved specific deletion of the floxed IE exon in adulthood using an inducible Cre expression system. In this conditional knock-out mouse line, the Gata1 mRNA level was significantly down-regulated in the megakaryocyte lineage, resulting in thrombocytopenia with a marked proliferation of megakaryocytes. By contrast, in the erythroid lineage, Gata1 mRNA was expressed abundantly utilizing alternative first exons. Especially, the IEb/c and newly identified IEd exons were transcribed at a level comparable with that of the IE exon in control mice. Surprisingly, in the IE-null mouse, these transcripts failed to produce full-length GATA1 protein, but instead yielded GATA1 lacking the N-terminal domain inefficiently. With low level expression of the short form of GATA1, IE-null mice showed severe anemia with skewed erythroid maturation. Notably, the hematological phenotypes of adult IE-null mice substantially differ from those observed in mice harboring conditional ablation of the entire Gata1 gene. The present study demonstrates that the IE exon is instrumental to adult erythropoiesis by regulating the proper level of transcription and selecting the correct transcription start site of the Gata1 gene.


Subject(s)
Alternative Splicing/genetics , Exons/genetics , GATA1 Transcription Factor/biosynthesis , GATA1 Transcription Factor/genetics , Gene Expression Regulation, Developmental , Sequence Deletion/genetics , Aging/genetics , Aging/pathology , Animals , Base Sequence , Cell Differentiation , Embryo, Mammalian/metabolism , Erythroid Precursor Cells/cytology , Erythroid Precursor Cells/metabolism , GATA1 Transcription Factor/chemistry , Hematopoiesis/genetics , Hyperplasia , Megakaryocytes/pathology , Mice , Molecular Sequence Data , Protein Structure, Tertiary , RNA, Messenger/genetics , RNA, Messenger/metabolism , Thrombocytopenia/genetics , Thrombocytopenia/pathology , Transcription, Genetic
18.
Blood ; 114(25): 5162-72, 2009 Dec 10.
Article in English | MEDLINE | ID: mdl-19843882

ABSTRACT

The transcription factor Gata1 is required for the development of erythrocytes and megakaryocytes. Previous studies with a complementation rescue approach showed that the zinc finger domains are required for both primitive and definitive hematopoiesis. Here we report a novel zebrafish gata1 mutant with an N-ethyl-N-nitrosourea-induced point mutation in the C-finger (gata1(T301K)). The Gata1 protein with this mutation bound to its DNA target sequence with reduced affinity and transactivated inefficiently in a reporter assay. gata1(T301K/T301K) fish had a decreased number of erythrocytes during primitive hematopoiesis but normal adult hematopoiesis. We crossed the gata1(T301K/T301K) fish with those carrying the R339X mutation, also known as vlad tepes (vlt), which abolishes DNA binding and transactivation activities. As we reported previously, gata1(vlt/vlt) embryos were "bloodless" and died approximately 11 to 15 days after fertilization. Interestingly, the gata1(T301K/vlt) fish had nearly a complete block of primitive hematopoiesis, but they resumed hematopoiesis between 7 and 14 days after fertilization and grew to phenotypically normal fish with normal adult hematopoiesis. Our findings suggest that the impact of Gata1 on hematopoiesis correlates with its DNA-binding ability and that primitive hematopoiesis is more sensitive to reduction in Gata1 function than definitive hematopoiesis.


Subject(s)
DNA/metabolism , GATA1 Transcription Factor/metabolism , Hematopoiesis , Zebrafish Proteins/metabolism , Zebrafish/metabolism , Amino Acid Sequence , Animals , Binding Sites/genetics , DNA/chemistry , Embryo, Nonmammalian/embryology , Embryo, Nonmammalian/metabolism , Female , Flow Cytometry , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/genetics , Gene Expression Regulation, Developmental , In Situ Hybridization , Male , Models, Molecular , Molecular Sequence Data , Mutation , Nucleic Acid Conformation , Protein Binding , Protein Structure, Tertiary , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Transcriptional Activation , Zebrafish/embryology , Zebrafish/genetics , Zebrafish Proteins/chemistry , Zebrafish Proteins/genetics
19.
PLoS Biol ; 7(6): e1000123, 2009 Jun 09.
Article in English | MEDLINE | ID: mdl-19513100

ABSTRACT

How cell proliferation subsides as cells terminally differentiate remains largely enigmatic, although this phenomenon is central to the existence of multicellular organisms. Here, we show that GATA-1, the master transcription factor of erythropoiesis, forms a tricomplex with the retinoblastoma protein (pRb) and E2F-2. This interaction requires a LXCXE motif that is evolutionary conserved among GATA-1 orthologs yet absent from the other GATA family members. GATA-1/pRb/E2F-2 complex formation stalls cell proliferation and steers erythroid precursors towards terminal differentiation. This process can be disrupted in vitro by FOG-1, which displaces pRb/E2F-2 from GATA-1. A GATA-1 mutant unable to bind pRb fails to inhibit cell proliferation and results in mouse embryonic lethality by anemia. These findings clarify the previously suspected cell-autonomous role of pRb during erythropoiesis and may provide a unifying molecular mechanism for several mouse phenotypes and human diseases associated with GATA-1 mutations.


Subject(s)
E2F2 Transcription Factor/metabolism , Erythropoiesis , GATA1 Transcription Factor/metabolism , Retinoblastoma Protein/metabolism , Amino Acid Motifs , Amino Acid Sequence , Animals , Cell Division , Cell Proliferation , Erythroid Cells/cytology , Erythroid Cells/metabolism , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/deficiency , Humans , Mice , Molecular Sequence Data , NIH 3T3 Cells , Nuclear Proteins/metabolism , Protein Binding , Retinoblastoma Protein/deficiency , Transcription Factors/metabolism
20.
Blood ; 114(1): 165-73, 2009 Jul 02.
Article in English | MEDLINE | ID: mdl-19411634

ABSTRACT

In addition to orchestrating the expression of all erythroid-specific genes, GATA-1 controls the growth, differentiation, and survival of the erythroid lineage through the regulation of genes that manipulate the cell cycle and apoptosis. The stages of mammalian erythropoiesis include global gene inactivation, nuclear condensation, and enucleation to yield circulating erythrocytes, and some of the genes whose expression are altered by GATA-1 during this process are members of the p53 pathway. In this study, we demonstrate a specific in vitro interaction between the transactivation domain of p53 (p53TAD) and a segment of the GATA-1 DNA-binding domain that includes the carboxyl-terminal zinc-finger domain. We also show by immunoprecipitation that the native GATA-1 and p53 interact in erythroid cells and that activation of p53-responsive promoters in an erythroid cell line can be inhibited by the overexpression of GATA-1. Mutational analysis reveals that GATA-1 inhibition of p53 minimally requires the segment of the GATA-1 DNA-binding domain that interacts with p53TAD. This inhibition is reciprocal, as the activation of a GATA-1-responsive promoter can be inhibited by p53. Based on these findings, we conclude that inhibition of the p53 pathway by GATA-1 may be essential for erythroid cell development and survival.


Subject(s)
GATA1 Transcription Factor/metabolism , Tumor Suppressor Protein p53/antagonists & inhibitors , Tumor Suppressor Protein p53/metabolism , Animals , Binding Sites , Cell Differentiation , Cell Line, Tumor , Cell Survival , DNA/chemistry , DNA/metabolism , Erythroid Cells/cytology , Erythroid Cells/metabolism , GATA1 Transcription Factor/chemistry , GATA1 Transcription Factor/genetics , Humans , In Vitro Techniques , Macromolecular Substances , Mice , Mutagenesis, Site-Directed , Nuclear Magnetic Resonance, Biomolecular , Protein Interaction Domains and Motifs , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Transcriptional Activation , Tumor Suppressor Protein p53/chemistry , Tumor Suppressor Protein p53/genetics , Zinc Fingers
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