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1.
Int J Mol Sci ; 24(2)2023 Jan 07.
Article in English | MEDLINE | ID: mdl-36674724

ABSTRACT

The GTP cyclohydrolase 1 enzyme (GTPCH1) is the rate-limiting enzyme of the tetrahydrobiopterin (BH4) biosynthetic pathway. Physiologically, BH4 plays a crucial role as an essential cofactor for the production of catecholamine neurotransmitters, including epinephrine, norepinephrine and dopamine, as well as the gaseous signaling molecule, nitric oxide. Pathological levels of the cofactor have been reported in a number of disease states, such as inflammatory conditions, neuropathic pain and cancer. Targeting the GTPCH1 enzyme has great potential in the management of a number of disease pathologies associated with dysregulated BH4 physiology. This study is an in silico investigation of the human GTPCH1 enzyme using virtual screening and molecular dynamic simulation to identify molecules that can be repurposed to therapeutically target the enzyme. A three-tier molecular docking protocol was employed in the virtual screening of a comprehensive library of over 7000 approved medications and nutraceuticals in order to identify hit compounds capable of binding to the GTPCH1 binding pocket with the highest affinity. Hit compounds were further verified by molecular dynamic simulation studies to provide a detailed insight regarding the stability and nature of the binding interaction. In this study, we identify a number of drugs and natural compounds with recognized anti-inflammatory, analgesic and cytotoxic effects, including the aminosalicylate olsalazine, the antiepileptic phenytoin catechol, and the phlorotannins phlorofucofuroeckol and eckol. Our results suggest that the therapeutic and clinical effects of hit compounds may be partially attributed to the inhibition of the GTPCH1 enzyme. Notably, this study offers an understanding of the off-target effects of a number of compounds and advocates the potential role of aminosalicylates in the regulation of BH4 production in inflammatory disease states. It highlights an in silico drug repurposing approach to identify a potential means of safely targeting the BH4 biosynthetic pathway using established therapeutic agents.


Subject(s)
GTP Cyclohydrolase , Neuralgia , Humans , GTP Cyclohydrolase/genetics , GTP Cyclohydrolase/chemistry , Biopterins/pharmacology , Drug Repositioning , Molecular Docking Simulation , Neuralgia/metabolism , Nitric Oxide/metabolism
2.
J Biomol Struct Dyn ; 40(19): 9318-9331, 2022.
Article in English | MEDLINE | ID: mdl-34032179

ABSTRACT

GTP cyclohydrolase II (GCHII) is one of the rate limiting enzymes in riboflavin biosynthesis pathway and is shown to be a potential drug target for most of the pathogens. Previous biochemical and structural studies have identified the active site residues and elucidated the steps involved in the catalytic mechanism of GCHII. However, the last ∼20-25 C-terminal residues of GCHII remains unstructured in all the crystal structures determined to date and their role in the catalytic activity, if any, remains elusive. Therefore, to understand the role of these unstructured C-terminal residues, a series of C-terminal deletion mutants of GCHII from Helicobacter pylori (hGCHII) were generated and their catalytic activity was compared with its wild-type. Surprisingly, none of the C-terminal deletion mutants shows any enzymatic activity indicating that these are essential for GCHII function. To get additional insights for such loss of activity, homology models of full-length and deletion mutants of hGCHII in complex with GTP, Mg2+, and Zn2+ were generated and subjected to molecular dynamics simulation studies. The simulation studies show that a conserved histidine at 190th position from the unstructured C-terminal region of hGCHII interacts with α-phosphate of GTP. We propose that His-190 may play a role in the hydrolysis of pyrophosphate from GTP and in releasing the product, DARP. In summary, we demonstrate that the unstructured C-terminal residues of GCHII are important for its enzymatic activity and must be considered during rational drug designing. Communicated by Ramaswamy H. Sarma.


Subject(s)
GTP Cyclohydrolase , Helicobacter pylori , GTP Cyclohydrolase/genetics , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/metabolism , Catalytic Domain , Helicobacter pylori/genetics , Guanosine Triphosphate
3.
Biochemistry ; 60(40): 3027-3039, 2021 10 12.
Article in English | MEDLINE | ID: mdl-34569786

ABSTRACT

Guanosine triphosphate (GTP) cyclohydrolase II (RibA) is one of three enzymes that hydrolytically cleave the C8-N9 bond of the GTP guanine. RibA also catalyzes a subsequent hydrolytic attack at the base liberating formate and in addition cleaves the α-ß phosphodiester bond of the triphosphate to form pyrophosphate (PPi). These hydrolytic reactions are promoted by tandem active-site metal ions, zinc and magnesium, that respectively function at the GTP guanine and triphosphate moieties. The RibA reaction is part of riboflavin biosynthesis and forms 2,5-diamino-6-ß-pyrimidinone 5'-phosphate, an exocyclic pyrimidine nucleotide that ultimately forms the pyrimidine ring of the isoalloxazine of riboflavin. The stoichiometry of the RibA reaction was defined in the study that first identified this activity in Escherichia coli (Foor, F., Brown, G. M. J. Biol. Chem., 1975, 250, 9, 3545-3551) and has not been quantitatively evaluated in subsequent works. Using primarily transient state approaches we examined the interaction of RibA from E. coli with the GTP, inosine triphosphate, and PPi. Our data indicate that PPi is a slow substrate for RibA that is cleaved to form two phosphate ions (Pi). A combination of real-time enzymatically coupled Pi reporter assays and end-point 31P NMR revealed that Pi is formed at a catalytically relevant rate in the native reaction of RibA with GTP, redefining the reaction stoichiometry. Furthermore, our data indicate that both PPi and GTP stimulate conformational changes prior to hydrolytic chemistry, and we conclude that the cleavage of PPi bound as a substrate or an intermediate state results in conformational relaxation.


Subject(s)
Escherichia coli Proteins/chemistry , Escherichia coli/enzymology , GTP Cyclohydrolase/chemistry , Biocatalysis , Diphosphates/metabolism , Escherichia coli Proteins/metabolism , GTP Cyclohydrolase/metabolism , Guanosine Triphosphate/metabolism , Inosine Triphosphate/metabolism , Kinetics , Protein Binding , Pyrophosphatases/chemistry , Pyrophosphatases/metabolism
4.
J Struct Biol ; 213(1): 107691, 2021 03.
Article in English | MEDLINE | ID: mdl-33387654

ABSTRACT

GTP Cyclohydrolase I (GCH1) catalyses the conversion of guanosine triphosphate (GTP) to dihydroneopterin triphosphate (H2NTP), the initiating step in the biosynthesis of tetrahydrobiopterin (BH4). BH4 functions as co-factor in neurotransmitter biosynthesis. BH4 homeostasis is a promising target to treat pain disorders in patients. The function of mammalian GCH1s is regulated by a metabolic sensing mechanism involving a regulator protein, GCH1 feedback regulatory protein (GFRP). Dependent on the relative cellular concentrations of effector ligands, BH4 and phenylalanine, GFRP binds GCH1 to form inhibited or activated complexes, respectively. We determined high-resolution structures of the ligand-free and -bound human GFRP and GCH1-GFRP complexes by X-ray crystallography. Highly similar binding modes of the substrate analogue 7-deaza-GTP to active and inhibited GCH1-GFRP complexes confirm a novel, dissociation rate-controlled mechanism of non-competitive inhibition to be at work. Further, analysis of all structures shows that upon binding of the effector molecules, the conformations of GCH1 or GFRP are altered and form highly complementary surfaces triggering a picomolar interaction of GFRP and GCH1 with extremely slow koff values, while GCH1-GFRP complexes rapidly disintegrate in absence of BH4 or phenylalanine. Finally, comparing behavior of full-length and N-terminally truncated GCH1 we conclude that the disordered GCH1 N-terminus does not have impact on complex formation and enzymatic activity. In summary, this comprehensive and methodologically diverse study helps to provide a better understanding of the regulation of GCH1 by GFRP and could thus stimulate research on GCH1 modulating drugs.


Subject(s)
GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/metabolism , Intracellular Signaling Peptides and Proteins/chemistry , Intracellular Signaling Peptides and Proteins/metabolism , Biophysics/methods , Crystallography, X-Ray/methods , Feedback , Humans , Phenylalanine/chemistry , Phenylalanine/metabolism
5.
Biotechnol Appl Biochem ; 68(4): 756-768, 2021 Aug.
Article in English | MEDLINE | ID: mdl-32691412

ABSTRACT

GTP cyclohydrolase I enzyme (GTPCH-I) is a rate limiting enzyme in the biosynthesis pathway of tetrahydrobiopterin (BH4) and tetrahydrofolate (THF) compounds; latter being are an essential compounds involved in many biological functions. This enzyme has been evaluated structurally and functionally in many organisms to understand its putative role in cell processes, kinetics, regulations, drug targeting in infectious diseases, pain sensitivity in humans, and so on. In Mycobacterium tuberculosis (a human pathogen causing tuberculosis), this GTPCH-I activity has been predicted to be present in Rv3609c gene (folE) of H37 Rv strain, which till date has not been studied in detail. In order to understand in depth, the structure and function of folE protein in M. tuberculosis H37 Rv, in silico study was designed by using many different bioinformatics tools. Comparative and structural analysis predicts that Rv3609c gene is similar to folE protein ortholog of Listeria monocytogenes (cause food born disease), and uses zinc ion as a cofactor for its catalysis. Result shows that mutation of folE protein at 52th residue from tyrosine to glycine or variation in pH and temperature can lead to high destability in protein structure. Studies here have also predicted about the functional regions and interacting partners involved with folE protein. This study has provided clues to carry out experimentally the analysis of folE protein in mycobacteria and if found suitable will be used for drug targeting.


Subject(s)
Bacterial Proteins , Computer Simulation , GTP Cyclohydrolase , Mutation, Missense , Mycobacterium tuberculosis , Amino Acid Substitution , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Enzyme Stability/genetics , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/genetics , Hydrogen-Ion Concentration , Mycobacterium tuberculosis/enzymology , Mycobacterium tuberculosis/genetics , Protein Domains
6.
Bioorg Med Chem Lett ; 30(2): 126818, 2020 01 15.
Article in English | MEDLINE | ID: mdl-31771800

ABSTRACT

GTP cyclohydrolase (GCYH-I) is an enzyme in the folate biosynthesis pathway that has not been previously exploited as an antibiotic target, although several pathogens including N. gonorrhoeae use a form of the enzyme GCYH-IB that is structurally distinct from the human homologue GCYH-IA. A comparison of the crystal structures of GCYH-IA and -IB with the nM inhibitor 8-oxo-GTP bound shows that the active site of GCYH-IB is larger and differently shaped. Based on this structural information, we designed and synthesized a small set of 8-oxo-G derivatives with ether linkages at O6 and O8 expected to displace water molecules from the expanded active site of GCYH-IB. The most potent of these compounds, G3, is selective for GCYH-IB, supporting the premise that potent and selective inhibitors of GCYH-IB could constitute a new class of small molecule antibiotics.


Subject(s)
Anti-Bacterial Agents/chemistry , GTP Cyclohydrolase/chemistry , Guanosine/antagonists & inhibitors , Anti-Bacterial Agents/therapeutic use , Guanosine/analogs & derivatives , Humans , Molecular Structure , Structure-Activity Relationship
7.
Acta Crystallogr F Struct Biol Commun ; 75(Pt 9): 586-592, 2019 Sep 01.
Article in English | MEDLINE | ID: mdl-31475925

ABSTRACT

A putative open reading frame encoding GTP cyclohydrolase I from Listeria monocytogenes was expressed in a recombinant Escherichia coli strain. The recombinant protein was purified and was confirmed to convert GTP to dihydroneopterin triphosphate (Km = 53 µM; vmax = 180 nmol mg-1 min-1). The protein was crystallized from 1.3 M sodium citrate pH 7.3 and the crystal structure was solved at a resolution of 2.4 Š(Rfree = 0.226) by molecular replacement using human GTP cyclohydrolase I as a template. The protein is a D5-symmetric decamer with ten topologically equivalent active sites. Screening a small library of about 9000 compounds afforded several inhibitors with IC50 values in the low-micromolar range. Several inhibitors had significant selectivity with regard to human GTP cyclohydrolase I. Hence, GTP cyclohydrolase I may be a potential target for novel drugs directed at microbial infections, including listeriosis, a rare disease with high mortality.


Subject(s)
Bacterial Proteins/chemistry , GTP Cyclohydrolase/chemistry , Listeria monocytogenes/enzymology , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Crystallography, X-Ray , Escherichia coli/metabolism , GTP Cyclohydrolase/antagonists & inhibitors , GTP Cyclohydrolase/genetics , GTP Cyclohydrolase/isolation & purification , Listeria monocytogenes/genetics , Neopterin/analogs & derivatives , Neopterin/metabolism , Protein Conformation , Recombinant Proteins/metabolism , Small Molecule Libraries/chemistry , Small Molecule Libraries/pharmacology
8.
J Mol Neurosci ; 68(2): 214-220, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30911941

ABSTRACT

Dopa-responsive dystonia (DRD), a movement disorder, is characterized by young onset dystonia and dramatic response to levodopa treatment. However, the wide range of phenotypic spectrum of the disease often leads to misdiagnosis. DRD is usually caused by mutation in GCH1 gene coding for GTP cyclohydrolase 1 (GTPCH1) enzyme, which is involved in biosynthesis of tetrahydrobiopterin (BH4) and dopamine. In this study, the entire GCH1 gene was screened in 14 Indian DRD patients and their family members. A family was identified where the proband was found to be a compound heterozygote for GCH1 (p.R184H and p.V204I) variants; the former variant being inherited from the father and the latter from the mother. All other family members harboring one of these GCH1 variants were asymptomatic except for one (heterozygous for p.R184H) who was diagnosed with DRD. In silico analyses predicted these two variants to be pathogenic and disruptive to GCH1enzymatic activity. This proband was misdiagnosed as cerebral palsy and remained untreated for 25 years. He developed retrograde movements and gait problems in lower limbs, deformity in upper limbs, and difficulty in swallowing, and became mute. However, most of his symptoms were alleviated upon levodopa administration. Our study confirms the variability of DRD phenotype and the reduced penetrance of GCH1 mutations. It also emphasizes the need of molecular diagnostic test and L-dopa trial especially for those with atypical DRD phenotype.


Subject(s)
Dystonic Disorders/genetics , GTP Cyclohydrolase/genetics , Mutation , Adolescent , Adult , Aged , Aged, 80 and over , Child , Diagnosis, Differential , Dystonic Disorders/pathology , Female , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/metabolism , Heterozygote , Humans , Infant , Male , Middle Aged , Pedigree , Penetrance
9.
Biochem J ; 474(6): 1017-1039, 2017 03 07.
Article in English | MEDLINE | ID: mdl-28126741

ABSTRACT

Guanosine 5'-triphosphate (GTP) cyclohydrolase-I (GCYH-I) catalyzes the first step in folic acid biosynthesis in bacteria and plants, biopterin biosynthesis in mammals, and the biosynthesis of 7-deazaguanosine-modified tRNA nucleosides in bacteria and archaea. The type IB GCYH (GCYH-IB) is a prokaryotic-specific enzyme found in many pathogens. GCYH-IB is structurally distinct from the canonical type IA GCYH involved in biopterin biosynthesis in humans and animals, and thus is of interest as a potential antibacterial drug target. We report kinetic and inhibition data of Neisseria gonorrhoeae GCYH-IB and two high-resolution crystal structures of the enzyme; one in complex with the reaction intermediate analog and competitive inhibitor 8-oxoguanosine 5'-triphosphate (8-oxo-GTP), and one with a tris(hydroxymethyl)aminomethane molecule bound in the active site and mimicking another reaction intermediate. Comparison with the type IA enzyme bound to 8-oxo-GTP (guanosine 5'-triphosphate) reveals an inverted mode of binding of the inhibitor ribosyl moiety and, together with site-directed mutagenesis data, shows that the two enzymes utilize different strategies for catalysis. Notably, the inhibitor interacts with a conserved active-site Cys149, and this residue is S-nitrosylated in the structures. This is the first structural characterization of a biologically S-nitrosylated bacterial protein. Mutagenesis and biochemical analyses demonstrate that Cys149 is essential for the cyclohydrolase reaction, and S-nitrosylation maintains enzyme activity, suggesting a potential role of the S-nitrosothiol in catalysis.


Subject(s)
Bacterial Proteins/chemistry , GTP Cyclohydrolase/chemistry , Guanosine Triphosphate/analogs & derivatives , Neisseria gonorrhoeae/chemistry , Tromethamine/chemistry , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Catalytic Domain , Cloning, Molecular , Crystallography, X-Ray , Enzyme Inhibitors/chemistry , Escherichia coli/genetics , Escherichia coli/metabolism , GTP Cyclohydrolase/antagonists & inhibitors , GTP Cyclohydrolase/genetics , GTP Cyclohydrolase/metabolism , Gene Expression , Guanosine Triphosphate/chemistry , Kinetics , Models, Molecular , Mutation , Neisseria gonorrhoeae/enzymology , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , S-Nitrosothiols/chemistry , Substrate Specificity
10.
J Struct Biol ; 192(1): 100-15, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26272484

ABSTRACT

GTP cyclohydrolase II (GCHII), catalyzes the conversion of GTP to 2,5-diamino-6-ß-ribosyl-4(3H)-pyrimidinone-5'-phosphate and has been shown to be essential for pathogens. Here we describe the biochemical, kinetic and structural characterization of GCHII from Helicobacter pylori (hGCHII). The crystal structure of hGCHII, unlike other GCHII structures, revealed that cysteines at the active site existed in oxidized state forming two disulfide bonds and lacked Zn(2+) that was shown to be indispensable for catalytic activity in other species. However, incubation of hGCHII with hydrogen peroxide, an oxidizing agent, followed by PAR-assay showed that Zn(2+) was intrinsically present, indicating that all cysteines at the catalytic site remained in reduced state. Moreover, site directed mutagenesis of catalytic site cysteines revealed that only three, out of four cysteines were essential for hGCHII activity. These results, though, indicated that hGCHII crystallized in oxidized form, the expulsion of Zn(2+) upon oxidation of catalytic cysteines revealed its ability to act in response to the redox environment. Exploring further, incubation of hGCHII with reversible thiol modifying agent S-methyl-methane-thiosulfonate resulted in loss of GCHII activity due to oxidation of its cysteine residues as revealed by mass spectrometry studies. However, addition of reducing agent DTT partially restored the hGCHII catalytic activity. Taken together, these results demonstrate that hGCHII can regulate its catalytic activity depending on the redox environment, a function hitherto unknown for GCHII.


Subject(s)
Bacterial Proteins/chemistry , GTP Cyclohydrolase/chemistry , Helicobacter pylori/enzymology , Amino Acid Sequence , Catalytic Domain , Conserved Sequence , Crystallography, X-Ray , Guanosine Triphosphate/analogs & derivatives , Guanosine Triphosphate/chemistry , Kinetics , Models, Molecular , Molecular Sequence Data , Oxidation-Reduction , Peptide Fragments/chemistry , Protein Binding , Protein Structure, Secondary
11.
PLoS One ; 9(9): e106388, 2014.
Article in English | MEDLINE | ID: mdl-25181484

ABSTRACT

Dopa-responsive dystonia, a rare disorder typically presenting in early childhood with lower limb dystonia and gait abnormality, responds well to levodopa. However, it is often misdiagnosed with the wide spectrum of phenotypes. By exome sequencing, we make a rapid genetic diagnosis for two atypical dopa-responsive dystonia pedigrees. One pedigree, presented with prominent parkinsonism, was misdiagnosed as Parkinson's disease until a known mutation in GCH1 (GTP cyclohydrolase 1) gene (NM_000161.2: c.631_632delAT, p.Met211ValfsX38) was found. The other pedigree was detected with a new compound heterozygous mutation in TH (tyrosine hydroxylase) gene [(NM_000360.3: c.911C>T, p.Ala304Val) and (NM_000360.3: c.1358G>A, p.Arg453His)], whose proband, a pregnant woman, required a rapid and less-biased genetic diagnosis. In conclusion, we demonstrated that exome sequencing could provide a precise and rapid genetic testing in the diagnosis of Mendelian diseases, especially for diseases with wide phenotypes.


Subject(s)
Dystonic Disorders/diagnosis , Dystonic Disorders/genetics , Exome/genetics , Genetic Testing , Sequence Analysis, DNA/methods , Adolescent , Amino Acid Sequence , Base Sequence , Cell Extracts , Child, Preschool , Female , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/genetics , Humans , Male , Middle Aged , Molecular Sequence Data , Mutant Proteins/metabolism , Mutation/genetics , Transfection , Tyrosine 3-Monooxygenase/metabolism , Young Adult
12.
PLoS One ; 8(10): e76975, 2013.
Article in English | MEDLINE | ID: mdl-24124602

ABSTRACT

BACKGROUND: Mutations in the GCH1 gene are associated with childhood onset, dopa-responsive dystonia (DRD). Correct diagnosis of DRD is crucial, given the potential for complete recovery once treated with L-dopa. The majority of DRD associated mutations lie within the coding region of the GCH1 gene, but three additional single nucleotide sequence substitutions have been reported within the 5' untranslated (5'UTR) region of the mRNA. The biologic significance of these 5'UTR GCH1 sequence substitutions has not been analyzed. METHODOLOGY/PRINCIPAL FINDINGS: Luciferase reporter assays, quantitative real time PCR and RNA decay assays, combined with bioinformatics, revealed a pathogenic 5'UTR GCH1 substitution. The +142C>T single nucleotide 5'UTR substitution that segregates with affected status in DRD patients, substantially attenuates translation without altering RNA expression levels or stability. The +142C>T substitution disrupts translation most likely by creating an upstream initiation start codon (uAUG) and an upstream open reading frame (uORF). CONCLUSIONS/SIGNIFICANCE: This is the first GCH1 regulatory substitution reported to act at a post-transcriptional level, increasing the list of genetic diseases caused by abnormal translation and reaffirming the importance of investigating potential regulatory substitutions in genetic diseases.


Subject(s)
5' Untranslated Regions , Dystonic Disorders/genetics , GTP Cyclohydrolase/genetics , Polymorphism, Single Nucleotide , Animals , Base Sequence , Case-Control Studies , Cell Line, Tumor , Codon , Computational Biology , GTP Cyclohydrolase/chemistry , Gene Expression , Genes, Reporter , Humans , Molecular Sequence Data , Nucleic Acid Conformation , Open Reading Frames , RNA, Messenger/genetics , Recombinant Fusion Proteins , Sequence Alignment
13.
Acta Crystallogr D Biol Crystallogr ; 69(Pt 9): 1633-44, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23999287

ABSTRACT

The enzymes 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBPS) and GTP cyclohydrolase II (GCHII) catalyze the initial steps of both branches of the bacterial riboflavin-biosynthesis pathway. The structures and molecular mechanisms of DHBPS and GCHII as separate polypeptides are known; however, their organization and molecular mechanism as a bifunctional enzyme are unknown to date. Here, the crystal structure of an essential bifunctional DHBPS/GCHII enzyme from Mycobacterium tuberculosis (Mtb-ribA2) is reported at 3.0 Šresolution. The crystal structure revealed two conformationally different molecules of Mtb-ribA2 in the asymmetric unit that form a dimer via their GCHII domains. Interestingly, analysis of the crystal packing revealed a long `helical-like oligomer' formed by DHBPS and GCHII functional homodimers, thus generating an `open-ended' unit-cell lattice. However, size-exclusion chromatography studies suggest that Mtb-ribA2 exists as a dimer in solution. To understand the discrepancy between the oligomerization observed in solution and in the crystal structure, the DHBPS (Mtb-DHBPS) and GCHII (Mtb-GCHII) domains of Mtb-ribA2 have been cloned, expressed and purified as His-tagged proteins. Size-exclusion chromatography studies indicated that Mtb-GCHII is a dimer while Mtb-DHBPS exists as a monomer in solution. Moreover, kinetic studies revealed that the GCHII activities of Mtb-ribA2 and Mtb-GCHII are similar, while the DHBPS activity of Mtb-ribA2 is much higher than that of Mtb-DHBPS alone. Taken together, the results strongly suggest that Mtb-ribA2 exists as a dimer formed through its GCHII domains and requires full-length Mtb-ribA2 for optimal DHBPS activity.


Subject(s)
Bacterial Proteins/chemistry , GTP Cyclohydrolase/chemistry , Intramolecular Transferases/chemistry , Multifunctional Enzymes/chemistry , Mycobacterium tuberculosis/enzymology , Amino Acid Sequence , Bacterial Proteins/physiology , Crystallography, X-Ray , GTP Cyclohydrolase/physiology , Intramolecular Transferases/physiology , Multifunctional Enzymes/physiology , Protein Multimerization , Protein Structure, Tertiary , Sequence Alignment
14.
IUBMB Life ; 65(4): 323-33, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23457032

ABSTRACT

Within the brain, the reduced pteridine cofactor 6R-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) is absolutely required for the synthesis of the monoamine (MA) neurotransmitters dopamine (DA), norepinephrine, epinephrine (E), and serotonin (5-HT), the novel gaseous neurotransmitter nitric oxide and the production of yet to be identified 1-O-alkylglycerol-derived lipids. GTP cyclohydrolase I (GTPCH) catalyzes the first and limiting step in the BH4 biosynthetic pathway, which is now thought to involve up to eight different proteins supporting six alternate de novo and two alternate salvage pathways. Gene expression analysis across different regions of the human brain shows the abundance of transcripts coding for all eight of these proteins to be highly correlated with each other and to be enriched within human MA neurons. The potential for multiple routes for BH4 synthesis therefore exists within the human brain. GTPCH expression is particularly heterogeneous across different populations of human and rodent MA-containing neurons, with low expression levels and therefore BH4 being a characteristic of nigrostriatal DA (NSDA) neurons. Basic knowledge of how GCH1 gene transcription is controlled within NSDA neurons may explain the distinctive susceptibility of these neurons to human genetic mutations that result in BH4 deficiency. A model for cyclic adenosine monophosphate-dependent GCH1 transcription is described that involves a unique combination of DNA regulatory sequences and transcription factors. This model proposes that low levels of GCH1 transcription within NSDA neurons are driven by their distinctive physiology, suggesting that pharmacological manipulation of GCH1 gene transcription can be used to modify BH4 levels and therefore DA synthesis in the basal ganglia.


Subject(s)
Biopterins/analogs & derivatives , Dopamine/metabolism , Dopaminergic Neurons , GTP Cyclohydrolase/metabolism , Biopterins/biosynthesis , Biopterins/genetics , Biopterins/metabolism , Brain/metabolism , Dopamine/chemistry , Dopaminergic Neurons/chemistry , Dopaminergic Neurons/metabolism , Epinephrine/chemistry , Epinephrine/metabolism , GTP Cyclohydrolase/chemistry , Humans , Neurobiology , Neurotransmitter Agents/chemistry , Neurotransmitter Agents/metabolism , Serotonin/metabolism , Transcription, Genetic
15.
IUBMB Life ; 65(4): 310-22, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23457054

ABSTRACT

GTP cyclohydrolases generate the first committed intermediates for the biosynthesis of certain vitamins/cofactors (folic acid, riboflavin, deazaflavin, and tetrahydrobiopterin), deazapurine antibiotics, some t-RNA bases (queuosine, archaeosine), and the phytotoxin, toxoflavin. They depend on divalent cations for hydrolytic opening of the imidazole ring of the substrate, guanosine triphosphate (GTP). Surprisingly, the ring opening reaction is not the rate-limiting step for GTP cyclohydrolases I and II whose mechanism have been studied in some detail. GTP cyclohydrolase I, Ib, and II are potential targets for novel anti-infectives. Genetic factors modulating the activity of human GTP cyclohydrolase are highly pleiotropic, since the signal transponders whose biosyntheses require their participation (nitric oxide, catecholamines) impact a very wide range of physiological phenomena. Recent studies suggest that human GTP cyclohydrolase may become an oncology target.


Subject(s)
Folic Acid/chemistry , GTP Cyclohydrolase/chemistry , Guanosine Triphosphate/chemistry , Riboflavin/chemistry , Anti-Bacterial Agents/chemistry , Biopterins/analogs & derivatives , Biopterins/chemistry , Cations, Divalent/chemistry , Escherichia coli/chemistry , Folic Acid/biosynthesis , Humans , Kinetics , Riboflavin/biosynthesis
16.
IUBMB Life ; 65(4): 334-40, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23436441

ABSTRACT

Drosophila melanogaster has red eyes. Scientists have been curious about the biosynthesis of the red eye pigments and have completed a number of investigations on these compounds. Scientific contributions made over the past 50 years have improved our understanding of the red eye pigments. Researchers have elucidated the chemical structures of some pigments and have successfully purified and identified the enzymes that participate in the biosynthesis of the red eye pigments. In this article, we will review the characteristics of the Drosophila red eye pigments and of the enzymes and genes involved in its biosynthetic pathway.


Subject(s)
Drosophila melanogaster/metabolism , Eye/chemistry , Pigments, Biological/biosynthesis , Pteridines/metabolism , Animals , Eye/metabolism , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/metabolism , Mutation , Pteridines/chemistry
17.
PLoS One ; 7(9): e43306, 2012.
Article in English | MEDLINE | ID: mdl-22984419

ABSTRACT

GTP cyclohydrolase 1 (GTPCH1) is the rate-limiting enzyme in the de novo synthesis of tetrahydrobiopterin (BH4). GTPCH1 protein degradation has been reported in animal models of several diseases, including diabetes mellitus and hypertension. However, the molecular mechanisms by which GTPCH1 is degraded remain uncharacterized. Here we report a novel non-covalent interaction between polyubiquitin and GTPCH1 in vitro and in vivo. The non-covalent binding of GTPCH1 to polyubiquitin via an ubiquitin-binding domain (UBD) results in ubiquitination and degradation. Ectopic expression of ubiquitin in cultured cells accelerated GTPCH1 degradation. In cultured cells and in vitro assays, Lys48-linked ubiquitin chains, but not Lys63-linked chains, interacted with GTPCH1 and targeted it for degradation. Consistently, proteasome inhibition attenuated GTPCH1 degradation. Finally, direct mutagenesis of an isoleucine (Ile131) in the hydrophobic patch of the GTPCH1 UBD affected its ubiquitin binding and the enzyme stability. Taken together, we conclude that GTPCH1 non-covalently interacts with polyubiquitin via an ubiquitin-binding domain. The polyubiquitin binding directs GTPCH1 ubiquitination and proteasome degradation.


Subject(s)
GTP Cyclohydrolase/metabolism , Polyubiquitin/metabolism , Proteolysis , Amino Acid Sequence , Animals , Cells, Cultured , Endothelial Cells/enzymology , GTP Cyclohydrolase/chemistry , HEK293 Cells , Humans , Hydrophobic and Hydrophilic Interactions , Isoleucine/metabolism , Lung/enzymology , Lysine/metabolism , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Myocardium/enzymology , Proteasome Endopeptidase Complex/metabolism , Protein Binding , Protein Stability , Protein Structure, Tertiary , Ubiquitination
18.
J Biomol Screen ; 16(8): 836-44, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21693765

ABSTRACT

Tetrahydrobiopterin (BH(4)) is an essential cofactor for the nitric oxide (NO) synthases and the aromatic amino acid hydroxylases. Insufficient BH(4) has been implicated in various cardiovascular and neurological disorders. GTP cyclohydrolase 1 (GTPCH-1) is the rate-limiting enzyme for de novo biosynthesis of BH(4). The authors have recently shown that the interaction of GTPCH-1 with GTP cyclohydrolase feedback regulatory protein (GFRP) inhibits endothelial GTPCH-1 enzyme activity, BH(4) levels, and NO production. They propose that agents that disrupt the GTPCH-1/GFRP interaction can increase cellular GTPCH-1 activity, BH(4) levels, and NO production. They developed and optimized a novel time-resolved fluorescence resonance energy transfer (TR-FRET) assay to monitor the interaction of GTPCH-1 and GFRP. This assay is highly sensitive and stable and has a signal-to-background ratio (S/B) greater than 12 and a Z' factor greater than 0.8. This assay was used in an ultra-high-throughput screening (uHTS) format to screen the Library of Pharmacologically Active Compounds. Using independent protein-protein interaction and cellular activity assays, the authors identified compounds that disrupt GTPCH-1/GFRP binding and increase endothelial cell biopterin levels. Thus, this TR-FRET assay could be applied in future uHTS of additional libraries to search for molecules that increase GTPCH-1 activity and BH(4) levels.


Subject(s)
Biopterins/analogs & derivatives , Drug Evaluation, Preclinical/methods , Endothelial Cells/drug effects , Fluorescence Resonance Energy Transfer/methods , GTP Cyclohydrolase/metabolism , High-Throughput Screening Assays , Intracellular Signaling Peptides and Proteins/metabolism , Biopterins/analysis , Biopterins/biosynthesis , Cells, Cultured , Endothelial Cells/cytology , Endothelial Cells/metabolism , Fluorescence , GTP Cyclohydrolase/chemistry , Humans , Intracellular Signaling Peptides and Proteins/antagonists & inhibitors , Intracellular Signaling Peptides and Proteins/chemistry , Nitric Oxide/metabolism , Nitric Oxide Synthase/metabolism , Phycocyanin/analysis , Protein Binding , Small Molecule Libraries/analysis , Small Molecule Libraries/chemistry , Small Molecule Libraries/pharmacology
19.
Exp Parasitol ; 128(4): 309-17, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21510934

ABSTRACT

GTP-Cyclohydrolase (GTP-CH) is necessary for the production of tetrahydrobiopterin, a required cofactor for the three aromatic amino acid hydroxylases and nitric oxide synthases. The gene encoding GTP-CH is transcribed at high levels in infective third larval stages of a number of parasitic trichostrongylid nematodes. We explore the potential role of GTP-CH within the processes of nematode development and environmentally-induced hypobiosis. For two species of parasitic nematode that are of major economic and welfare importance to livestock in temperate regions, Teladorsagia circumcincta and Dictyocaulus viviparus, we have demonstrated that each of the pre-parasitic larval stages transcribe high mean levels of cat-4 (the gene encoding GTP-CH). Using quantitative real-time polymerase chain reaction analysis and two different isolates of D. viviparus, only one of which is capable of entering hypobiosis, we have shown that there were only minor differences between these isolates in mean cat-4 transcript levels, both during the parasitic stages and during the earlier environmental life cycle stages (L(1)-L(3)). Taken together, these data indicate that, although both species of nematode produce high levels of cat-4 transcript in pre-parasitic larval stages, GTP-CH levels are unlikely to be involved in the induction of parasite hypobiosis. Alternative roles for GTP-CH in larval development are discussed.


Subject(s)
GTP Cyclohydrolase/metabolism , Trichostrongyloidea/enzymology , Trichostrongyloidea/growth & development , Amino Acid Sequence , Animals , Base Sequence , Cattle , DNA, Complementary/chemistry , Dictyocaulus/enzymology , Dictyocaulus/genetics , Dictyocaulus/growth & development , Electrophoresis, Agar Gel , Female , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/genetics , Gene Expression Regulation, Enzymologic , Genome, Helminth , Larva/enzymology , Larva/genetics , Larva/growth & development , Male , Phylogeny , Polymerase Chain Reaction , RNA, Helminth/genetics , RNA, Helminth/isolation & purification , Sequence Alignment , Sheep , Transcription, Genetic , Trichostrongyloidea/genetics
20.
Protein Expr Purif ; 77(2): 159-65, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21262365

ABSTRACT

Molecular chaperones have been used for the improved expression of target proteins within heterologous systems; however, the chaperone and target protein have seldom been matched in terms of origin. We have developed a heterologous co-expression system that allows independent expression of the plasmodial chaperone, PfHsp70, and a plasmodial target protein. In this study, the target was Plasmodium falciparum GTP cyclohydrolase I (PfGCHI), the first enzyme in the plasmodial folate pathway. The sequential expression of the molecular chaperone followed by the target protein increased the expression of soluble functional PfGCHI. His-tagged PfGCHI was successfully purified using nickel affinity chromatography, and the specific activity was determined by high performance liquid chromatography with spectrofluorometeric detection to be 5.93nmol/h/mg. This is the first report of a heterologous co-expression system in which a plasmodial chaperone is harnessed for the improved production and purification of a plasmodial target protein.


Subject(s)
GTP Cyclohydrolase/genetics , HSP70 Heat-Shock Proteins/genetics , Protozoan Proteins/genetics , Recombinant Proteins/genetics , Antimalarials/therapeutic use , Chromatography, Affinity , Chromatography, High Pressure Liquid , Cloning, Molecular , Escherichia coli , GTP Cyclohydrolase/chemistry , GTP Cyclohydrolase/metabolism , Gene Expression , Gene Expression Regulation , HSP70 Heat-Shock Proteins/chemistry , HSP70 Heat-Shock Proteins/metabolism , Histidine/metabolism , Humans , Malaria, Falciparum/drug therapy , Malaria, Falciparum/parasitology , Molecular Targeted Therapy , Oligopeptides/metabolism , Plasmodium falciparum/genetics , Plasmodium falciparum/metabolism , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Solubility , Spectrometry, Fluorescence
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