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1.
J Ind Microbiol Biotechnol ; 50(1)2023 Feb 17.
Article in English | MEDLINE | ID: mdl-37849239

ABSTRACT

Coupling transcription of a cloned gene to the lac operon with induction by isopropylthio-ß-galactoside (IPTG) has been a favoured approach for recombinant protein expression using Escherichia coli as a heterologous host for more than six decades. Despite a wealth of experimental data gleaned over this period, a quantitative relationship between extracellular IPTG concentration and consequent levels of recombinant protein expression remains surprisingly elusive across a broad spectrum of experimental conditions. This is because gene expression under lac operon regulation is tightly correlated with intracellular IPTG concentration due to allosteric regulation of the lac repressor protein (lacY). An in-silico mathematical model established that uptake of IPTG across the cytoplasmic membrane of E. coli by simple diffusion was negligible. Conversely, lacY mediated active transport was a rapid process, taking only some seconds for internal and external IPTG concentrations to equalize. Optimizing kcat and KM parameters by targeted mutation of the galactoside binding site in lacY could be a future strategy to improve the performance of recombinant protein expression. For example, if kcat were reduced whilst KM was increased, active transport of IPTG across the cytoplasmic membrane would be reduced, thereby lessening the metabolic burden on the cell and expediating accumulation of recombinant protein. The computational model described herein is made freely available and is amenable to optimize recombinant protein expression in other heterologous hosts. ONE-SENTENCE SUMMARY: A computational model made freely available to optimize recombinant protein expression in Escherichia coli other heterologous hosts.


Subject(s)
Escherichia coli , Galactosides , Escherichia coli/genetics , Escherichia coli/metabolism , Isopropyl Thiogalactoside/metabolism , Isopropyl Thiogalactoside/pharmacology , Galactosides/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Cell Membrane/metabolism
2.
Biol Reprod ; 109(6): 799-811, 2023 12 11.
Article in English | MEDLINE | ID: mdl-37672213

ABSTRACT

Galectins are a phylogenetically conserved family of soluble ß-galactoside binding proteins. There are 16 different of galectins, each with a specific function determined by its distinct distribution and spatial structure. Galectin-13, galectin-14, and galectin-16 are distinct from other galectin members in that they are primarily found in placental tissue. These galectins, also referred to as placental galectins, play critical roles in regulating pregnancy-associated processes, such as placenta formation and maternal immune tolerance to the embedded embryo. The unique structural characteristics and the inability to bind lactose of placental galectins have recently received significant attention. This review primarily examines the novel structural features of placental galectins, which distinguish them from the classic galectins. Furthermore, it explores the correlation between these structural features and the loss of ß-galactoside binding ability. In addition, the newly discovered functions of placental galectins in recent years are also summarized in our review. A detailed understanding of the roles of placental galectins may contribute to the discovery of new mechanisms causing numerous pregnancy diseases and enable the development of new diagnostic and therapeutic strategies for the treatment of these diseases, ultimately benefiting the health of mothers and offspring.


Subject(s)
Galectins , Placenta , Female , Pregnancy , Humans , Placenta/metabolism , Galectins/chemistry , Galectins/metabolism , Galactosides/chemistry , Galactosides/metabolism
3.
Angew Chem Int Ed Engl ; 62(7): e202215535, 2023 02 06.
Article in English | MEDLINE | ID: mdl-36398566

ABSTRACT

Bacterial adhesion, biofilm formation and host cell invasion of the ESKAPE pathogen Pseudomonas aeruginosa require the tetravalent lectins LecA and LecB, which are therefore drug targets to fight these infections. Recently, we have reported highly potent divalent galactosides as specific LecA inhibitors. However, they suffered from very low solubility and an intrinsic chemical instability due to two acylhydrazone motifs, which precluded further biological evaluation. Here, we isosterically substituted the acylhydrazones and systematically varied linker identity and length between the two galactosides necessary for LecA binding. The optimized divalent LecA ligands showed improved stability and were up to 1000-fold more soluble. Importantly, these properties now enabled their biological characterization. The lead compound L2 potently inhibited LecA binding to lung epithelial cells, restored wound closure in a scratch assay and reduced the invasiveness of P. aeruginosa into host cells.


Subject(s)
Adhesins, Bacterial , Pseudomonas aeruginosa , Humans , Adhesins, Bacterial/chemistry , Pseudomonas aeruginosa/metabolism , Virulence Factors/metabolism , Galactosides/chemistry , Galactosides/metabolism , Galactosides/pharmacology , Bacterial Adhesion
4.
Glycoconj J ; 40(1): 85-95, 2023 02.
Article in English | MEDLINE | ID: mdl-36287345

ABSTRACT

The Dalbergieae lectin group encompasses several lectins with significant differences in their carbohydrate specificities and biological properties. The current work reports on the purification and characterization of a GalNAc/Gal-specific lectin from Vataireopsis araroba (Aguiar) Ducke, designated as VaL. The lectin was purified from the seeds in a single step using guar gum affinity chromatography. The lectin migrated as a single band of about 35 kDa on SDS-PAGE and, in native conditions, occurs as a homodimer. The purified lectin is stable at temperatures up to 60 °C and in a pH range from 7 to 8 and requires divalent cations for its activity. Sugar-inhibition assays demonstrate the lectin specificity towards N-acetyl-D-galactosamine, D-galactose and related sugars. Furthermore, glycan array analyses show that VaL interacts preferentially with glycans containing terminal GalNAc/Galß1-4GlcNAc. Biological activity assays were performed using three insect cell lines: CF1 midgut cells from the spruce budworm Choristoneura fumiferana, S2 embryo cells from the fruit fly Drosophila melanogaster, and GutAW midgut cells from the corn earworm Helicoverpa zea. In vitro assays indicated a biostatic effect for VaL on CF1 cells, but not on S2 and GutAW cells. The lectin presented a biostatic effect by reducing the cell growth and inducing cell agglutination, suggesting an interaction with glycans on the cell surface. VaL has been characterized as a galactoside-specific lectin of the Dalbergieae tribe, with sequence similarity to lectins from Vatairea and Arachis.


Subject(s)
Fabaceae , Lectins , Animals , Lectins/metabolism , Fabaceae/chemistry , Fabaceae/metabolism , Drosophila melanogaster , Carbohydrates/analysis , Seeds/chemistry , Polysaccharides/metabolism , Galactosides/analysis , Galactosides/metabolism , Plant Lectins/chemistry
5.
Int J Mol Sci ; 23(9)2022 Apr 26.
Article in English | MEDLINE | ID: mdl-35563169

ABSTRACT

In this study, we performed an association analysis of metabolomics and transcriptomics to reveal the anthocyanin biosynthesis mechanism in a new purple-leaf tea cultivar Zikui (Camellia sinensis cv. Zikui) (ZK). Three glycosylated anthocyanins were identified, including petunidin 3-O-glucoside, cyanidin 3-O-galactoside, and cyanidin 3-O-glucoside, and their contents were the highest in ZK leaves at 15 days. This is the first report on petunidin 3-O-glucoside in purple-leaf tea. Integrated analysis of the transcriptome and metabolome identified eleven dependent transcription factors, among which CsMYB90 had strong correlations with petunidin 3-O-glucoside, cyanidin 3-O-galactoside, and cyanidin 3-O-glucoside (PCC > 0.8). Furthermore, we also identified key correlated structural genes, including two positively correlated F3'H (flavonoid-3'-hydroxylase) genes, two positively correlated ANS (anthocyanin synthase) genes, and three negatively correlated PPO (polyphenol oxidase) genes. Overexpression of CsMYB90 in tobacco resulted in dark-purple transgenic calluses. These results showed that the increased accumulation of three anthocyanins in ZK may promote purple-leaf coloration because of changes in the expression levels of genes, including CsMYB90, F3'Hs, ANSs, and PPOs. These findings reveal new insight into the molecular mechanism of anthocyanin biosynthesis in purple-leaf tea plants and provide a series of candidate genes for the breeding of anthocyanin-rich cultivars.


Subject(s)
Camellia sinensis , Anthocyanins/metabolism , Camellia sinensis/genetics , Camellia sinensis/metabolism , Galactosides/metabolism , Gene Expression Regulation, Plant , Glucosides/metabolism , Metabolomics , Plant Breeding , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Tea/metabolism , Transcriptome
6.
Mikrochim Acta ; 189(1): 4, 2021 12 02.
Article in English | MEDLINE | ID: mdl-34855041

ABSTRACT

Synthetic biology approaches for rewiring of bacterial constructs to express particular intracellular factors upon induction with the target analyte are emerging as sensing paradigms for applications in environmental and in vivo monitoring. To aid in the design and optimization of bacterial constructs for sensing analytes, there is a need for lysis-free intracellular detection modalities that monitor the signal level and kinetics of expressed factors within different modified bacteria in a multiplexed manner, without requiring cumbersome surface immobilization. Herein, an electrochemical detection system on nanoporous gold that is electrofabricated with a biomaterial redox capacitor is presented for quantifying ß-galactosidase expressed inside modified Escherichia coli constructs upon induction with dopamine. This nanostructure-mediated redox amplification approach on a microfluidic platform allows for multiplexed assessment of the expressed intracellular factors from different bacterial constructs suspended in distinct microchannels, with no need for cell lysis or immobilization. Since redox mediators present over the entire depth of the microchannel can interact with the electrode and with the E. coli construct in each channel, the platform exhibits high sensitivity and enables multiplexing. We envision its application in assessing synthetic biology-based approaches for comparing specificity, sensitivity, and signal response time upon induction with target analytes of interest.


Subject(s)
Catechols/chemistry , Chitosan/chemistry , Electrochemical Techniques/methods , Escherichia coli Proteins/analysis , Nanopores , beta-Galactosidase/analysis , Dopamine/pharmacology , Escherichia coli/enzymology , Escherichia coli Proteins/metabolism , Galactosides/chemistry , Galactosides/metabolism , Gold/chemistry , Limit of Detection , Microfluidic Analytical Techniques , Oxidation-Reduction , Ruthenium/chemistry , Trans-Activators/metabolism , beta-Galactosidase/metabolism
7.
Virology ; 562: 29-39, 2021 10.
Article in English | MEDLINE | ID: mdl-34246113

ABSTRACT

When human influenza viruses are isolated and passaged in chicken embryos, variants with amino acid substitutions around the receptor binding site of hemagglutinin (HA) are selected; however, the mechanisms that underlie this phenomenon have yet to be elucidated. Here, we analyzed the receptor structures that contributed to propagation of egg-passaged human H1N1 viruses. The analysis included seasonal and 2009 pandemic strains, both of which have amino acid substitutions of HA found in strains isolated or passaged in eggs. These viruses exhibited high binding to sulfated glycans containing NeuAcα2-3Gal. In MDCK cells overexpressing the sulfotransferase that synthesize Galß1-4(SO3--6)GlcNAc, production of human H1N1 viruses was increased up to 90-fold. Furthermore, these sulfated glycans were expressed on the allantoic and amniotic membranes of chicken embryos. These results suggest that 6-sulfo sialyl Lewis X and/or NeuAcα2-3Galß1-4(SO3--6)GlcNAc are involved in efficient propagation of human H1N1 viruses in chicken embryos.


Subject(s)
Chick Embryo/virology , Influenza A Virus, H1N1 Subtype/growth & development , Polysaccharides/metabolism , Sulfates/metabolism , Allantois/metabolism , Amnion/metabolism , Animals , Chick Embryo/metabolism , Dogs , Galactosides/chemistry , Galactosides/metabolism , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Humans , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/metabolism , Madin Darby Canine Kidney Cells , Mutation , N-Acetylneuraminic Acid/chemistry , N-Acetylneuraminic Acid/metabolism , Polysaccharides/chemistry , Receptors, Virus/metabolism , Sulfates/chemistry , Sulfotransferases/genetics , Sulfotransferases/metabolism , Carbohydrate Sulfotransferases
8.
Eur J Med Chem ; 223: 113664, 2021 Nov 05.
Article in English | MEDLINE | ID: mdl-34225180

ABSTRACT

We have obtained the X-ray crystal structure of the galectin-8 N-terminal domain (galectin-8N) with a previously reported quinoline-galactoside ligand at a resolution of 1.6 Å. Based on this X-ray structure, a collection of galactosides derivatised at O3 with triazole, benzimidazole, benzothiazole, and benzoxazole moieties were designed and synthesised. This led to the discovery of a 3-O-(N-methylbenzimidazolylmethyl)-galactoside with a Kd of 1.8 µM for galectin-8N, the most potent selective synthetic galectin-8N ligand to date. Molecular dynamics simulations showed that benzimidazole-galactoside derivatives bind the non-conserved amino acid Gln47, accounting for the higher selectivity for galectin-8N. Galectin-8 is a carbohydrate-binding protein that plays a key role in pathological lymphangiogenesis, modulation of the immune system, and autophagy. Thus, the benzimidazole-derivatised galactosides represent promising compounds for studies of the pathological implications of galectin-8, as well as a starting point for the development of anti-tumour and anti-inflammatory therapeutics targeting galectin-8.


Subject(s)
Benzimidazoles/chemistry , Drug Design , Galactosides/chemistry , Galectins/chemistry , Benzimidazoles/metabolism , Binding Sites , Crystallography, X-Ray , Galactosides/metabolism , Galectins/genetics , Galectins/metabolism , Humans , Kinetics , Ligands , Molecular Dynamics Simulation , Protein Binding , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Structure-Activity Relationship , Thermodynamics
9.
Mar Drugs ; 19(5)2021 May 13.
Article in English | MEDLINE | ID: mdl-34068166

ABSTRACT

α-Neoagarobiose (NAB)/neoagarooligosaccharide (NAO) hydrolase plays an important role as an exo-acting 3,6-anhydro-α-(1,3)-L-galactosidase in agarose utilization. Agarose is an abundant polysaccharide found in red seaweeds, comprising 3,6-anhydro-L-galactose (AHG) and D-galactose residues. Unlike agarose degradation, which has been reported in marine microbes, recent metagenomic analysis of Bacteroides plebeius, a human gut bacterium, revealed the presence of genes encoding enzymes involved in agarose degradation, including α-NAB/NAO hydrolase. Among the agarolytic enzymes, BpGH117 has been partially characterized. Here, we characterized the exo-acting α-NAB/NAO hydrolase BpGH117, originating from B. plebeius. The optimal temperature and pH for His-tagged BpGH117 activity were 35 °C and 9.0, respectively, indicative of its unique origin. His-tagged BpGH117 was thermostable up to 35 °C, and the enzyme activity was maintained at 80% of the initial activity at a pre-incubation temperature of 40 °C for 120 min. Km and Vmax values for NAB were 30.22 mM and 54.84 U/mg, respectively, and kcat/Km was 2.65 s-1 mM-1. These results suggest that His-tagged BpGH117 can be used for producing bioactive products such as AHG and agarotriose from agarose efficiently.


Subject(s)
Bacteroides/enzymology , Disaccharidases/biosynthesis , Disaccharidases/chemistry , Disaccharides/metabolism , Edetic Acid/pharmacology , Enzyme Assays , Escherichia coli/genetics , Galactosides/metabolism , Humans , Hydrogen-Ion Concentration , Ions/pharmacology , Kinetics , Oligosaccharides/metabolism , Protein Stability , Sequence Analysis, Protein , Temperature
10.
Microb Cell Fact ; 20(1): 71, 2021 Mar 18.
Article in English | MEDLINE | ID: mdl-33736637

ABSTRACT

BACKGROUND: The spore-forming lactic acid bacterium Bacillus coagulans MA-13 has been isolated from canned beans manufacturing and successfully employed for the sustainable production of lactic acid from lignocellulosic biomass. Among lactic acid bacteria, B. coagulans strains are generally recognized as safe (GRAS) for human consumption. Low-cost microbial production of industrially valuable products such as lactic acid and various enzymes devoted to the hydrolysis of oligosaccharides and lactose, is of great importance to the food industry. Specifically, α- and ß-galactosidases are attractive for their ability to hydrolyze not-digestible galactosides present in the food matrix as well as in the human gastrointestinal tract. RESULTS: In this work we have explored the potential of B. coagulans MA-13 as a source of metabolites and enzymes to improve the digestibility and the nutritional value of food. A combination of mass spectrometry analysis with conventional biochemical approaches has been employed to unveil the intra- and extra- cellular glycosyl hydrolase (GH) repertoire of B. coagulans MA-13 under diverse growth conditions. The highest enzymatic activity was detected on ß-1,4 and α-1,6-glycosidic linkages and the enzymes responsible for these activities were unambiguously identified as ß-galactosidase (GH42) and α-galactosidase (GH36), respectively. Whilst the former has been found only in the cytosol, the latter is localized also extracellularly. The export of this enzyme may occur through a not yet identified secretion mechanism, since a typical signal peptide is missing in the α-galactosidase sequence. A full biochemical characterization of the recombinant ß-galactosidase has been carried out and the ability of this enzyme to perform homo- and hetero-condensation reactions to produce galacto-oligosaccharides, has been demonstrated. CONCLUSIONS: Probiotics which are safe for human use and are capable of producing high levels of both α-galactosidase and ß-galactosidase are of great importance to the food industry. In this work we have proven the ability of B. coagulans MA-13 to over-produce these two enzymes thus paving the way for its potential use in treatment of gastrointestinal diseases.


Subject(s)
Bacillus coagulans/enzymology , Galactosides/metabolism , Oligosaccharides/biosynthesis , Prebiotics , beta-Galactosidase/metabolism , Bacillus coagulans/growth & development , Bacillus coagulans/metabolism , Biocatalysis , Cloning, Molecular , Enzyme Stability , Galactose/analysis , Galactose/metabolism , Glycosylation , Hydrogen-Ion Concentration , Oligosaccharides/chemistry , Sequence Analysis, DNA , Substrate Specificity , alpha-Galactosidase/metabolism , beta-Galactosidase/chemistry , beta-Galactosidase/genetics
11.
Article in English | MEDLINE | ID: mdl-33486218

ABSTRACT

The screening and identification of bioactive components, which are effectively resistant to metallo-beta-lactamase (MßL), were studied in the alcohol extract of Schisandra chinensis (Turcz.) Baill. by metalloenzyme-immobilized affinity chromatography. Taking bizinc metalloenzyme beta-lactamase II from Bacillus cereus (Bc II) and monozinc metalloenzyme CphA from aeromonas hydrophila (CphA) as examples, we studied the feasibility of this scheme based on the construction of metalloenzyme-immobilized chromatographic model. It was found that the Bc II- and CphA-immobilized chromatographic column could be used not only to explore the interaction between the MßL and their specific ligands, but also to screen the bioactive components from traditional Chinese medicine. The Bc II-and CphA-immobilized columns were used to screen the bioactive components from the alcohol extract of Schisandra chinensis (Turcz.) Baill. Time-of-flight tandem mass spectrometry analysis and molecular docking revealed that isobutyl 3-O-sulfo-ß-D-galactopyranoside is the effective bioactive components that could bind with metalloenzyme Bc II. It is believed that our current work may provide a methodological reference for screening MßL inhibitors from traditional Chinese medicine.


Subject(s)
Bacterial Proteins/metabolism , Cephalosporinase/metabolism , Drug Discovery/methods , Plant Extracts/analysis , Schisandra/chemistry , beta-Lactamases/metabolism , Bacterial Proteins/chemistry , Cephalosporinase/chemistry , Chromatography, Affinity , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Galactosides/analysis , Galactosides/chemistry , Galactosides/metabolism , Molecular Docking Simulation , Plant Extracts/chemistry , Plant Extracts/metabolism , beta-Lactamases/chemistry
12.
Parasitology ; 148(6): 648-654, 2021 05.
Article in English | MEDLINE | ID: mdl-33461629

ABSTRACT

Galectins are a family of proteins that bind ß-galactosides and play key roles in a variety of cellular processes including host defence. They have been well studied in hosts but less so in gastrointestinal nematodes. Both host and parasite galectins are present in the gastrointestinal tract following infection. Parasite galectins can both bind antibody, especially highly glycosylated IgE and be bound by antibody. Parasite galectins may act as molecular sponges that soak up antibody. Host galectins promote mast cell degranulation while parasite galectins inhibit degranulation. Host and parasite galectins can also bind mucins and influence mucus viscosity. As the protective response against gastrointestinal nematode infection is partly dependent on IgE mediated mast cell degranulation and mucus, the interactions between host and parasite galectins play key roles in determining the outcome of infection.


Subject(s)
Galactosides/metabolism , Galectins/metabolism , Nematode Infections/metabolism , Animals , Galectins/chemistry , Host-Parasite Interactions , Molecular Structure , Polysaccharides/metabolism
13.
Anat Rec (Hoboken) ; 304(8): 1597-1628, 2021 08.
Article in English | MEDLINE | ID: mdl-33119962

ABSTRACT

The concept of the sugar code interprets the cellular glycophenotype as a rich source of information read by glycan-lectin recognition in situ. This study's aim is the comprehensive characterization of galectin expression by immunohistochemistry during chicken nephrogenesis along with mapping binding sites by (ga)lectin histochemistry. Light and two-color fluorescence microscopy were used. First, six plant/fungal lectins that are specific for galectin-binding parts of N- and O-glycans were applied. The spatiotemporally regulated distributions of these glycans in meso- and metanephros equip cells with potential binding partners for the galectins. Complete galectin profiling from HH Stage 20 (about 70-72 hr) onward revealed cell-, galectin-, and stage-dependent expression patterns. Representatives of all three types of modular architecture of the galectin family are detectable, and overlaps of signal distribution in light and two-color fluorescence microscopy illustrate a possibility for functional cooperation among them. Performing systematic galectin histochemistry facilitated comparisons between staining profiles of plant lectins and galectins. They revealed several cases for differences so that tissue lectins appear to be selective among the ß-galactosides. Notably, selectivity is also disclosed in intrafamily comparison. Thus, combining experimental series with plant and tissue lectins is a means to characterize target populations of glycans presented by cellular glycoconjugates for individual galectins. Our results document the presence and sophisticated level of elaboration among ß-galactosides and among the members of the family of galectins during organogenesis, using chicken galectins and kidney as model. Thus, they provide a clear guideline for functional assays using supramolecular tools, cells, and organ cultures.


Subject(s)
Galactosides/metabolism , Galectins/metabolism , Kidney/metabolism , Animals , Chickens , Glycomics , Glycosylation , Kidney/embryology
14.
J Biol Chem ; 295(52): 18426-18435, 2020 12 25.
Article in English | MEDLINE | ID: mdl-33127644

ABSTRACT

α-Linked galactose is a common carbohydrate motif in nature that is processed by a variety of glycoside hydrolases from different families. Terminal Galα1-3Gal motifs are found as a defining feature of different blood group and tissue antigens, as well as the building block of the marine algal galactan λ-carrageenan. The blood group B antigen and linear α-Gal epitope can be processed by glycoside hydrolases in family GH110, whereas the presence of genes encoding GH110 enzymes in polysaccharide utilization loci from marine bacteria suggests a role in processing λ-carrageenan. However, the structure-function relationships underpinning the α-1,3-galactosidase activity within family GH110 remain unknown. Here we focus on a GH110 enzyme (PdGH110B) from the carrageenolytic marine bacterium Pseudoalteromonas distincta U2A. We showed that the enzyme was active on Galα1-3Gal but not the blood group B antigen. X-ray crystal structures in complex with galactose and unhydrolyzed Galα1-3Gal revealed the parallel ß-helix fold of the enzyme and the structural basis of its inverting catalytic mechanism. Moreover, an examination of the active site reveals likely adaptations that allow accommodation of fucose in blood group B active GH110 enzymes or, in the case of PdGH110, accommodation of the sulfate groups found on λ-carrageenan. Overall, this work provides insight into the first member of a predominantly marine clade of GH110 enzymes while also illuminating the structural basis of α-1,3-galactoside processing by the family as a whole.


Subject(s)
Blood Group Antigens/metabolism , Carrageenan/metabolism , Galactosides/metabolism , Glycoside Hydrolases/chemistry , Pseudoalteromonas/enzymology , Blood Group Antigens/chemistry , Carrageenan/chemistry , Catalytic Domain , Crystallography, X-Ray , Galactosides/chemistry , Glycoside Hydrolases/classification , Glycoside Hydrolases/metabolism , Hydrolysis , Models, Molecular , Phylogeny , Protein Conformation , Substrate Specificity
15.
J Nutr Biochem ; 83: 108418, 2020 09.
Article in English | MEDLINE | ID: mdl-32592950

ABSTRACT

Colorectal cancer (CRC) is the fourth cancer with the most new cases reported in 2018 worldwide. Consumption of fruit and vegetables is a protective factor against the risk of CRC. Beyond this, flavonoids could orchestrate these healthy effects. Apart from containing the typical apple flavonoids, red-fleshed apples also contain anthocyanins, mainly cyanidin-3-O-galactoside (Cy3Gal). Through an azoxymethane rat carcinogenesis model, a study was carried out in order to assess the possible protective effects of apple polyphenols, with special attention to anthocyanins. In addition, apart from negative and positive controls, a group with chemotherapy with 5-fluorouracil (5FU) was included to compare their performance against the output collected from the animal treatments with white-fleshed apple (WF), red-fleshed apple (RF) and Cy3Gal (AE). Although the 5FU group presented the best performance towards aberrant crypt foci (ACF) inhibition (70.1%), rats fed with white-fleshed apples ('Golden Smoothee') were able to achieve 41.3% ACF inhibition, while none of the challenged treatments (WF, RF and AE) suffered mucin depletion in their colonocytes. Expression changes of 17 genes related to CRC were assessed. In detail, the ACF inhibition phenotype detected in 5FU and WF groups could be explained through the expression changes detected in the apoptosis-related genes of Aurka, p53 and Cox2. Moreover, in the apple consumption groups (WF and RF), a reduced protein expression of matrix metalloproteinases with gelatinase activity (MMP-2 and 9) was detected. Overall, our study suggests an effect of apple polyphenols and apple anthocyanin Cy3Gal against colon carcinogenesis, retarding/diminishing the appearance of the precancerous markers studied.


Subject(s)
Adenocarcinoma/diet therapy , Colonic Neoplasms/diet therapy , Malus/metabolism , Adenocarcinoma/metabolism , Adenocarcinoma/pathology , Animals , Anthocyanins/analysis , Anthocyanins/metabolism , Azoxymethane/adverse effects , Carcinogenesis , Colonic Neoplasms/metabolism , Colonic Neoplasms/pathology , Flavonoids/analysis , Flavonoids/metabolism , Fruit/chemistry , Fruit/metabolism , Galactosides/analysis , Galactosides/metabolism , Humans , Male , Malus/chemistry , Plant Extracts/analysis , Plant Extracts/metabolism , Polyphenols/analysis , Polyphenols/metabolism , Rats , Rats, Wistar
16.
Cold Spring Harb Protoc ; 2020(5): 099739, 2020 05 01.
Article in English | MEDLINE | ID: mdl-32358051

ABSTRACT

ß-Galactosidase has been used extensively both as a label in enzyme immunoassays and for immunocytochemistry. One good substrate is 5-bromo-4-chloro-3-indolyl-ß-d-galactopyranoside (X-gal), which gives an intense blue product. The product is stable and insoluble in alcohol as well as H2O.


Subject(s)
Galactosides/metabolism , Immunoenzyme Techniques/methods , Immunohistochemistry/methods , Indoles/metabolism , beta-Galactosidase/metabolism , Immunoenzyme Techniques/instrumentation , Immunohistochemistry/instrumentation , Substrate Specificity
17.
Methods Mol Biol ; 2132: 379-389, 2020.
Article in English | MEDLINE | ID: mdl-32306345

ABSTRACT

Tachyzoites, which are infective forms of Toxoplasma gondii, use their actinomyosin system to move over surfaces and invade host cells. Central to this process is the regulated release of micronemes organelles contents. The microneme protein 4 (MIC4) has the property to recognize galactosides residues linked to glycoproteins on the host cell surface. This property allows that MIC4 binds to TLR2- and TLR4 N-linked glycans and promote the activation of cell innate immune cells and secretion of inflammatory cytokines, acting on resistance against the parasite. Obtention of MIC4 from T. gondii requires several purification steps, is time-consuming and provides low yield. Therefore, this section details the protocol for prokaryotic expression, production, and purification of recombinant MIC4 (rMIC4) and for experimental assays to confirm its biological activity.


Subject(s)
Cell Adhesion Molecules/pharmacology , Galactosides/metabolism , Protozoan Proteins/pharmacology , Toll-Like Receptors/agonists , Toxoplasma/metabolism , Cell Adhesion Molecules/genetics , Cell Adhesion Molecules/metabolism , Cell Membrane/metabolism , Galactosides/chemistry , Glycoproteins/chemistry , HEK293 Cells , Humans , Immunity, Innate , Protein Engineering , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Recombinant Proteins/metabolism , Recombinant Proteins/pharmacology , Toll-Like Receptor 2/metabolism , Toll-Like Receptor 4/metabolism , Toxoplasma/genetics
18.
J Biochem ; 167(6): 587-596, 2020 Jun 01.
Article in English | MEDLINE | ID: mdl-31960919

ABSTRACT

Maintenance of cell surface residency and function of glycoproteins by lectins are essential for regulating cellular functions. Galectins are ß-galactoside-binding lectins and form a galectin-lattice, which regulates stability, clustering, membrane sub-domain localization and endocytosis of plasmalemmal glycoproteins. We have previously reported that galectin-2 (Gal-2) forms a complex with cationic amino acid transporter 3 (CAT3) in pancreatic ß cells, although the biological significance of the molecular interaction between Gal-2 and CAT3 has not been elucidated. In this study, we demonstrated that the structure of N-glycan of CAT3 was either tetra- or tri-antennary branch structure carrying ß-galactosides, which works as galectin-ligands. Indeed, CAT3 bound to Gal-2 using ß-galactoside epitope. Moreover, the disruption of the glycan-mediated bindings between galectins and CAT3 significantly reduced cell surface expression levels of CAT3. The reduced cell surface residency of CAT3 attenuated the cellular arginine uptake activities and subsequently reduced nitric oxide production, and thus impaired the arginine-stimulated insulin secretion of pancreatic ß cells. These results indicate that galectin-lattice stabilizes CAT3 by preventing endocytosis to sustain the arginine-stimulated insulin secretion of pancreatic ß cells. This provides a novel cell biological insight into the endocrinological mechanism of nutrition metabolism and homeostasis.


Subject(s)
Amino Acid Transport Systems, Basic/metabolism , Galectin 2/metabolism , Insulin Secretion/drug effects , Insulin-Secreting Cells/metabolism , Signal Transduction/immunology , Amino Acid Transport Systems, Basic/immunology , Animals , Antibodies/immunology , Arginine/metabolism , Cell Line, Tumor , Cell Membrane/metabolism , Endocytosis/immunology , Epitopes/metabolism , Galactosides/metabolism , Galectin 2/immunology , Lactose/pharmacology , Ligands , Mice , Nitric Oxide/biosynthesis , Polysaccharides/metabolism , Signal Transduction/drug effects
19.
Proc Natl Acad Sci U S A ; 117(2): 977-981, 2020 01 14.
Article in English | MEDLINE | ID: mdl-31889006

ABSTRACT

LacY catalyzes accumulation of galactosides against a concentration gradient by coupling galactoside and H+ transport (i.e., symport). While alternating access of sugar- and H+-binding sites to either side of the membrane is driven by binding and dissociation of sugar, the electrochemical H+ gradient ([Formula: see text]) functions kinetically by decreasing the Km for influx 50- to 100-fold with no change in Kd The affinity of protonated LacY for sugar has an apparent pK (pKapp) of ∼10.5, due specifically to the pKa of Glu325, a residue that plays an irreplaceable role in coupling. In this study, rates of lactose/H+ efflux were measured from pH 5.0 to 9.0 in the absence or presence of a membrane potential (ΔΨ, interior positive), and the effect of the imposed ΔΨ on the kinetics of efflux was also studied in right-side-out membrane vesicles. The findings reveal that [Formula: see text] induces an asymmetry in the transport cycle based on the following observations: 1) the efflux rate of WT LacY exhibits a pKapp of ∼7.2 that is unaffected by the imposed ΔΨ; 2) ΔΨ increases the rate of efflux at all tested pH values, but enhancement is almost 2 orders of magnitude less than observed for influx; 3) mutant Glu325 - Ala does little or no efflux in the absence or presence of ΔΨ, and ambient pH has no effect; and 4) the effect of ΔΨ (interior positive) on the Km for efflux is almost insignificant relative to the 50- to 100-fold decrease in the Km for influx driven by ΔΨ (interior negative).


Subject(s)
Galactosides/metabolism , Membrane Potentials/physiology , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/metabolism , Protons , Binding Sites , Biological Transport , Hydrogen-Ion Concentration , Ion Transport , Kinetics , Lactose/metabolism , Membrane Transport Proteins/genetics , Models, Molecular
20.
Methods ; 172: 86-94, 2020 02 01.
Article in English | MEDLINE | ID: mdl-31472270

ABSTRACT

The "gene scissors" CRISPR-Cas currently revolutionize the field of molecular biology with an enormous impact on society due to the broad application potentials in biomedicine, biotechnology and agriculture. We have developed simple CRISPR-Cas experiments that can serve to introduce pupils, students and non-scientists alike to the fascinating power of targeted gene editing. The experimental course is divided into two parts. In part 1, we target plasmid borne lacZ to convert blue E. coli to white E. coli. In part 2, we analyse the CRISPR-Cas9 mediated double strand breaks in the lacZ gene by a) colony PCR, b) colony cracking gel or c) restriction digest of the plasmids. Experimental work is embedded in short theoretical lecture parts that provide background of CRISPR-Cas and a step-by-step tutorial for the practical work. Though the experiment is robust, inexpensive and simple it should be noted that guidance by an expert instructor is required. Based on our experience, a full day lab course has a positive influence on the participants' attitude towards research in general. This is true for high school students as well as non-scientists (age groups 16-70 years).


Subject(s)
CRISPR-Cas Systems/genetics , Education/methods , Gene Editing/methods , Molecular Biology/education , Adolescent , Adult , Aged , Chromogenic Compounds/metabolism , Color , DNA Breaks, Double-Stranded , Escherichia coli/enzymology , Escherichia coli/genetics , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Galactosides/metabolism , Humans , Indoles/metabolism , Lac Operon/genetics , Middle Aged , Plasmids/genetics , Schools , Students , Young Adult , beta-Galactosidase/genetics , beta-Galactosidase/metabolism
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