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1.
Chemosphere ; 330: 138728, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37080470

ABSTRACT

Phytoremediation is currently a more environmentally friendly and economical measure for the remediation of cadmium (Cd) contaminated soil. Heavy metal-resistant plant species, Cannabis sativa L. was inoculated with Rhizophagus irregularis to investigate the mechanisms of mycorrhizal in improving the Cd remediation ability of C. sativa. The results showed that after inoculation with R. irregularis, C. sativa root Cd contents increased significantly, and leaf Cd enrichment decreased significantly. At the transcriptional level, R. irregularis down-regulated the expression of the ABC transporter family but up-regulated differentially expressed genes regulating low molecular weight organic acids. The levels of malic acid, citric acid, and lactic acid were significantly increased in the rhizosphere soil, and they were significantly and strongly related to oxidizable Cd concentrations. Then citric acid levels were considerably and positively connected to exchangeable Cd concentrations. Our findings revealed that through regulating the movement of root molecules, arbuscular mycorrhizal fungus enhanced the heavy metal tolerance of C. sativa even more, meanwhile, they changed the Cd chemical forms by altering the composition of low molecular weight organic acids, which in turn affected soil Cd bioavailability.


Subject(s)
Cannabis , Glomeromycota , Metals, Heavy , Mycorrhizae , Soil Pollutants , Mycorrhizae/metabolism , Cadmium/metabolism , Cannabis/genetics , Cannabis/metabolism , Glomeromycota/metabolism , Metals, Heavy/metabolism , Soil Pollutants/metabolism , Soil , Biodegradation, Environmental , Plant Roots/metabolism
2.
Mol Plant Microbe Interact ; 35(6): 464-476, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35285673

ABSTRACT

Arbuscular mycorrhizal fungi (AMF) colonize roots, where they provide nutrients in exchange for sugars and lipids. Because AMF lack genes for cytosolic fatty acid de novo synthase (FAS), they depend on host-derived fatty acids. AMF colonization is accompanied by expression of specific lipid genes and synthesis of sn-2 monoacylglycerols (MAGs). It is unknown how host-derived fatty acids are taken up by AMF. We describe the characterization of two AMP-binding domain protein genes from Rhizophagus irregularis, RiFAT1 and RiFAT2, with sequence similarity to Saccharomyces cerevisiae fatty acid transporter 1 (FAT1). Uptake of 13C-myristic acid (14:0) and, to a lesser extent, 13C-palmitic acid (16:0) was enhanced after expression of RiFAT1 or RiFAT2 in S. cerevisiae Δfat1 cells. The uptake of 2H-labeled fatty acids from 2H-myristoylglycerol or 2H-palmitoylglycerol was also increased after RiFAT1 and RiFAT2 expression in Δfat, but intact 2H-MAGs were not detected. RiFAT1 and RiFAT2 expression was induced in colonized roots compared with extraradical mycelium. 13C-label in the AMF-specific palmitvaccenic acid (16:1Δ11) and eicosatrienoic acid (20:3) were detected in colonized roots only when 13C2-acetate was supplemented but not 13C-fatty acids, demonstrating that de novo synthesized, host-derived fatty acids are rapidly taken up by R. irregularis from the roots. The results show that RiFAT1 and RiFAT2 are involved in the uptake of myristic acid (14:0) and palmitic acid (16:0), while fatty acids from MAGs are only taken up after hydrolysis. Therefore, the two proteins might be involved in fatty acid import into the fungal arbuscules in colonized roots.[Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Subject(s)
Glomeromycota , Mycorrhizae , Saccharomyces cerevisiae Proteins , Adenosine Monophosphate/metabolism , Carrier Proteins/metabolism , Fatty Acid Transport Proteins/metabolism , Fatty Acids/metabolism , Fungi , Glomeromycota/genetics , Glomeromycota/metabolism , Myristic Acids/metabolism , Palmitic Acids/metabolism , Plant Roots/microbiology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism
3.
New Phytol ; 233(3): 1097-1107, 2022 02.
Article in English | MEDLINE | ID: mdl-34747029

ABSTRACT

Chromosome folding links genome structure with gene function by generating distinct nuclear compartments and topologically associating domains. In mammals, these undergo preferential interactions and regulate gene expression. However, their role in fungal genome biology is unclear. Here, we combine Nanopore (ONT) sequencing with chromatin conformation capture sequencing (Hi-C) to reveal chromosome and epigenetic diversity in a group of obligate plant symbionts: the arbuscular mycorrhizal fungi (AMF). We find that five phylogenetically distinct strains of the model AMF Rhizophagus irregularis carry 33 chromosomes with substantial within-species variability in size, as well as in gene and repeat content. Strain-specific Hi-C contact maps reveal a 'checkerboard' pattern that underline two dominant euchromatin (A) and heterochromatin (B) compartments. Each compartment differs in the level of gene transcription, regulation of candidate effectors and methylation frequencies. The A-compartment is more gene-dense and contains most core genes, while the B-compartment is more repeat-rich and has higher rates of chromosomal rearrangement. While the B-compartment is transcriptionally repressed, it has significantly more secreted proteins and in planta upregulated candidate effectors, suggesting a possible host-induced change in chromosome conformation. Overall, this study provides a fine-scale view into the genome biology and evolution of model plant symbionts, and opens avenues to study the epigenetic mechanisms that modify chromosome folding during host-microbe interactions.


Subject(s)
Glomeromycota , Mycorrhizae , Fungi , Genome, Fungal , Glomeromycota/genetics , Glomeromycota/metabolism , Mycorrhizae/physiology , Plants/genetics
4.
Proc Natl Acad Sci U S A ; 117(41): 25779-25788, 2020 10 13.
Article in English | MEDLINE | ID: mdl-32999061

ABSTRACT

Arbuscular mycorrhizal (AM) fungi, forming symbiotic associations with land plants, are obligate symbionts that cannot complete their natural life cycle without a host. The fatty acid auxotrophy of AM fungi is supported by recent studies showing that lipids synthesized by the host plants are transferred to the fungi, and that the latter lack genes encoding cytosolic fatty acid synthases. Therefore, to establish an asymbiotic cultivation system for AM fungi, we tried to identify the fatty acids that could promote biomass production. To determine whether AM fungi can grow on medium supplied with fatty acids or lipids under asymbiotic conditions, we tested eight saturated or unsaturated fatty acids (C12 to C18) and two ß-monoacylglycerols. Only myristate (C14:0) led to an increase in the biomass of Rhizophagus irregularis, inducing extensive hyphal growth and formation of infection-competent secondary spores. However, such spores were smaller than those generated symbiotically. Furthermore, we demonstrated that R. irregularis can take up fatty acids in its branched hyphae and use myristate as a carbon and energy source. Myristate also promoted the growth of Rhizophagus clarus and Gigaspora margarita Finally, mixtures of myristate and palmitate accelerated fungal growth and induced a substantial change in fatty acid composition of triacylglycerol compared with single myristate application, although palmitate was not used as a carbon source for cell wall biosynthesis in this culture system. Our findings demonstrate that myristate boosts the asymbiotic growth of AM fungi and can also serve as a carbon and energy source.


Subject(s)
Glomeromycota/metabolism , Mycorrhizae/metabolism , Myristates/metabolism , Carbon/metabolism , Cell Wall/metabolism , Energy Metabolism , Glomeromycota/growth & development , Hyphae/growth & development , Hyphae/metabolism , Mycorrhizae/growth & development
5.
Chemosphere ; 258: 127337, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32947656

ABSTRACT

The experiment was designed to evaluate the roles of Rhizophagus irregularis on chlorophyll fluorescence and chromium bioaccumulation in a grass species (Brachiaria mutica) by supplementing Cr+6 at different concentrations. Arbuscular Mycorrhizal Fungi (AMF) association facilitated lessening of chromium level in contaminated soil and enhanced chromium bioavailability in Brachiaria mutica. The mycorrhizal inoculated increased the chlorophyll (0.925 mg/g), carotenoid (0.127 mg/g), protein (2.883 mg/g), proline (0.889 mg/g) contents and activities of antioxidant enzymes like catalase, ascorbate peroxidase and glutathione peroxidase. The mycorrhizal inoculated plants also showed enhanced overall photosynthetic performance (PIϕ = 2.473) and enhanced PS-II to PS-I electron transport as evident from yield parameter (0.712) and TR0/RC (2.419) for 60 mg/kg Cr+6 treatment. The observations suggest that AMF association could defend the plants from chromium stress by elevating the number of antioxidants in plants. Rhizophagus irregularis was found to maintain a successful symbiotic relationship with Brachiaria mutica in chromium contaminated soil. The observations recommended that Rhizophagus irregularis in association with Brachiaria mutica would be an innovative approach for decontamination of Cr+6.


Subject(s)
Biodegradation, Environmental , Brachiaria/metabolism , Chromium/metabolism , Soil Pollutants/metabolism , Antioxidants/metabolism , Bioaccumulation , Chlorophyll/metabolism , Chromium/analysis , Glomeromycota/metabolism , Mycorrhizae/metabolism , Photosynthesis , Plants/metabolism , Poaceae/metabolism , Soil , Soil Pollutants/analysis , Symbiosis
6.
Biochemistry ; 59(11): 1163-1172, 2020 03 24.
Article in English | MEDLINE | ID: mdl-32135062

ABSTRACT

Arbuscular mycorrhiza (AM) fungi deliver mineral nutrients to the plant host in exchange for reduced carbon in the form of sugars and lipids. Colonization with AM fungi upregulates a specific host lipid synthesis pathway resulting in the production of fatty acids. Predominantly palmitic acid (16:0) and the unusual palmitvaccenic acid (16:1Δ11cis) accumulate in the fungus Rhizophagus irregularis. Here, we present the isolation and characterization of RiOLE1-LIKE, the desaturase involved in palmitvaccenic acid synthesis, by heterologous expression in yeast and plants. Results are in line with the scenario in which RiOLE1-LIKE encodes an acyl-CoA desaturase with substrate specificity for C15-C18 acyl groups, in particular C16. Phylogenetic analysis of RiOLE1-LIKE-related sequences revealed that this gene is conserved in AM fungi from the Glomales and Diversisporales but is absent from nonsymbiotic Mortierellaceae and Mucoromycotina fungi, suggesting that 16:1Δ11cis provides a specific function during AM colonization.


Subject(s)
Fatty Acid Desaturases/metabolism , Fungal Proteins/metabolism , Glomeromycota/enzymology , Mycorrhizae/enzymology , Fatty Acid Desaturases/chemistry , Fatty Acid Desaturases/genetics , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungi/classification , Fungi/enzymology , Fungi/genetics , Glomeromycota/chemistry , Glomeromycota/genetics , Glomeromycota/metabolism , Mycorrhizae/chemistry , Mycorrhizae/genetics , Mycorrhizae/metabolism , Palmitic Acids/chemistry , Palmitic Acids/metabolism , Phylogeny
7.
Fungal Biol ; 124(2): 91-101, 2020 02.
Article in English | MEDLINE | ID: mdl-32008757

ABSTRACT

Arbuscular Mycorrhizal fungi (AMF, Glomeromycota) form obligate symbiotic associations with the roots of most terrestrial plants. Our understanding of the molecular mechanisms enabling AMF propagation and AMF-host interaction is currently incomplete. Analysis of AMF proteomes could yield important insights and generate hypotheses on the nature and mechanism of AMF-plant symbiosis. Here, we examined the extraradical mycelium proteomic profile of the arbuscular mycorrhizal fungus Rhizophagus irregularis grown on Ri T-DNA transformed Chicory roots in a root organ culture setting. Our analysis detected 529 different peptides that mapped to 474 translated proteins in the R. irregularis genome. R. irregularis proteome was characterized by a high proportion of proteins (9.9 % of total, 21.4 % of proteins with functional prediction) mediating a wide range of signal transduction processes, e.g. Rho1 and Bmh2, Ca-signaling (calmodulin, and Ca channel protein), mTOR signaling (MAP3K7, and MAPKAP1), and phosphatidate signaling (phospholipase D1/2) proteins, as well as members of the Ras signaling pathway. In addition, the proteome contained an unusually large proportion (53.6 %) of hypothetical proteins, the majority of which (85.8 %) were Glomeromycota-specific. Forty-eight proteins were predicted to be surface/membrane associated, including multiple hypothetical proteins of yet-unrecognized functions. However, no evidence for the overproduction of specific proteins, previously implicated in promoting soil health and aggregation was obtained. Finally, the comparison of R. irregularis proteome to previously published AMF proteomes identified a core set of pathways and processes involved in AMF growth. We conclude that R. irregularis growth on chicory roots requires the activation of a wide range of signal transduction pathways, the secretion of multiple novel hitherto unrecognized Glomeromycota-specific proteins, and the expression of a wide array of surface-membrane associated proteins for cross kingdom cell-to-cell communications.


Subject(s)
Fungi , Mycelium/metabolism , Proteome , Cell Communication , Fungal Proteins/genetics , Fungal Proteins/metabolism , Fungi/genetics , Fungi/metabolism , Genome, Fungal , Glomeromycota/genetics , Glomeromycota/metabolism , Glycoproteins/genetics , Glycoproteins/metabolism , Mycorrhizae/metabolism , Plant Roots/microbiology , Plant Somatic Embryogenesis Techniques/methods , Plants/microbiology , Proteome/genetics , Proteome/metabolism , Proteomics/methods , Signal Transduction , Symbiosis/genetics , Symbiosis/physiology
8.
Ecotoxicol Environ Saf ; 182: 109383, 2019 Oct 30.
Article in English | MEDLINE | ID: mdl-31260919

ABSTRACT

Phytoremediation is an alternative for remediating soil contamination by copper, and its efficiency has been shown to increase when arbuscular mycorrhizal fungi (AMF) and earthworms are separately inoculated into the soil. This study evaluated the isolated and combined effects of inoculating earthworms and arbuscular mycorrhizal fungi into a sandy soil on copper phytoremediation by Canavalia ensiformis. The plants were grown in a greenhouse in soil contaminated with 100 mg Cu kg-1 with and without being inoculated with the arbuscular mycorrhizal fungus Rhizoglomus clarum and the earthworm Eisenia andrei. The availabilities of solid-phase Cu and other nutrients in the soil solution and plant growth were evaluated along with Cu phytotoxicity based on photochemical efficiency and oxidative stress enzyme activity. Accumulation of Cu and other nutrients in the shoots and roots; mycorrhizal colonization, nodulation, and reproduction; and Cu accumulation in the earthworm tissues were also evaluated. The copper caused photosynthetic and biochemical damage that reduced the shoot dry weight by 44% and the root dry weight by 29%. However, the arbuscular mycorrhizal fungus alleviated the Cu toxicity to the plant and increased the shoot dry weight by 81% in the contaminated soil. The earthworms increased the Cu uptake and translocation to the shoot by 31%. The combined presence of the arbuscular mycorrhizal fungus and earthworms in the contaminated soil increased the growth and Cu content of the aerial plant tissues, yielding a 200% increase in Cu accumulation (metal content × biomass) in the C. ensiformis shoots. Combined inoculation with earthworms and arbuscular mycorrhizal fungi increased copper phytoextraction by Canavalia ensiformis in a sandy soil.


Subject(s)
Canavalia/metabolism , Copper/analysis , Glomeromycota/metabolism , Mycorrhizae/metabolism , Oligochaeta/metabolism , Soil Pollutants/analysis , Animals , Biodegradation, Environmental , Biomass , Canavalia/growth & development , Glomeromycota/growth & development , Mycorrhizae/growth & development , Soil/chemistry
9.
Curr Biol ; 29(12): 2043-2050.e8, 2019 06 17.
Article in English | MEDLINE | ID: mdl-31178314

ABSTRACT

The world's ecosystems are characterized by an unequal distribution of resources [1]. Trade partnerships between organisms of different species-mutualisms-can help individuals cope with such resource inequality [2-4]. Trade allows individuals to exchange commodities they can provide at low cost for resources that are otherwise impossible or more difficult to access [5, 6]. However, as resources become increasingly patchy in time or space, it is unknown how organisms alter their trading strategies [7, 8]. Here, we show how a symbiotic fungus mediates trade with a host root in response to different levels of resource inequality across its network. We developed a quantum-dot-tracking technique to quantify phosphorus-trading strategies of arbuscular mycorrhizal fungi simultaneously exposed to rich and poor resource patches. By following fluorescent nanoparticles of different colors across fungal networks, we determined where phosphorus was hoarded, relocated, and transferred to plant hosts. We found that increasing exposure to inequality stimulated trade. Fungi responded to high resource variation by (1) increasing the total amount of phosphorus distributed to host roots, (2) decreasing allocation to storage, and (3) differentially moving resources within the network from rich to poor patches. Using single-particle tracking and high-resolution video, we show how dynamic resource movement may help the fungus capitalize on value differences across the trade network, physically moving resources to areas of high demand to gain better returns. Such translocation strategies can help symbiotic organisms cope with exposure to resource inequality.


Subject(s)
Daucus carota/microbiology , Glomeromycota/metabolism , Mycorrhizae/physiology , Phosphorus/metabolism , Plant Roots/microbiology , Symbiosis , Nutrients , Quantum Dots
10.
J Genet ; 98(2)2019 06.
Article in English | MEDLINE | ID: mdl-31204704

ABSTRACT

Despite the ubiquitous occurrence of heat-shock protein 60 (Hsp60) and their role in maintenance of cell activity and integrity, this protein remains poorly characterized in many of the symbiotic soil mycorrhizal fungi such as Rhizophagus irregularis. Thus, in the current study, an attempt has been made to elucidate the evolutionary history, time of divergence followed by estimation of population genetic parameters of hsp60 using R. irregularis as a model organism. Sequence alignment reported here identified several close homologues for hsp60 (gene) and Hsp60 (protein) from diverse taxa, while the output from protein-based phylogenetic tree indicates that mitochondrial Hsp60 of R. irregularis shares close evolutionary relationship with classical α-proteobacteria. This is perhaps the first line of evidence elucidating the likelihood of hsp60 from fungal taxa sharing a close evolutionary relationship with classical α-proteobacteria as a common ancestor. Comprehensive analysis of mitochondrial hsp60 from selected fungal taxa from the evolutionary point of view explains the possibility of gene duplication and or horizontal gene transfer of this gene across various fungal species. Synteny relationships and population genetics credibly explain high genetic variability associated with fungal hsp60 presumably brought by random genetic recombination events. The results presented here also confirm a high level of genetic differentiation of hsp60 among all the three fungal populations analysed. In this context, the outcome of the current study, basedon computational approach, stands as a testimony for explaining the possibility of increased genetic differentiation experienced by hsp60 of R. irregularis.


Subject(s)
Chaperonin 60/genetics , Evolution, Molecular , Genetic Variation , Glomeromycota/genetics , Chaperonin 60/metabolism , Codon , Databases, Genetic , Dyslexia/genetics , Genetics, Population , Glomeromycota/classification , Glomeromycota/metabolism , Humans , Meta-Analysis as Topic , Mitochondria/genetics , Mitochondria/metabolism , Odds Ratio , Phylogeny , Polymorphism, Genetic , Synteny
11.
Sci Rep ; 9(1): 8240, 2019 06 03.
Article in English | MEDLINE | ID: mdl-31160630

ABSTRACT

Arbuscular mycorrhizal fungi (AMF) can be beneficial for improving restoration of radioactive-cesium (137Cs)-contaminated soils through soil remediation. However, there has been no information on species diversity and the composition of AMF communities in 137Cs-contaminated soil after the Fukushima-Daiichi Nuclear Power Plant (NPP) disaster. We examined the community dynamics of indigenous AMF colonizing roots of napiergrass (Pennisetum purpureum) in two different 137Cs-contaminated land-use fields (grassland and paddy field) by an Illumina MiSeq sequencing investigation within a 30-km radius around the Fukushima-Daiichi NPP in 2013 (sampling year 1) and 2014 (sampling year 2). We found nine AMF families, including Glomeraceae, Gigasporaceae, Paraglomeraceae, Claroideoglomeraceae, Acaulosporaceae, Archeosporaceae, Ambisporaceae, Diversisporaceae and uncultured Glomeromycotina in roots. Glomeraceae was the most abundant in both grassland and paddy field, followed by Paraglomeraceae. The diversity of AMF in grassland and paddy field was higher in 2014 than in 2013. Furthermore, the AMF community structure was impacted by sampling year and land-use type. The AMF community structures colonizing napiergrass roots were also significantly impacted by land-use type and year throughout the 2-year investigation. To our knowledge, our results are the first report to reveal the community dynamics of indigenous AMF in the 137Cs-contaminated fields around NPP.


Subject(s)
Cesium Radioisotopes/analysis , Fukushima Nuclear Accident , Glomeromycota/metabolism , Mycorrhizae/metabolism , Soil Pollutants, Radioactive/analysis , Japan , Mycorrhizae/classification , Pennisetum/microbiology
12.
Mycorrhiza ; 29(4): 351-362, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31044298

ABSTRACT

Interactions between bacteria and arbuscular mycorrhizal (AM) fungi play a significant role in mediating organic phosphorus (P) transformations and turnover in soil. The bacterial community in soil is largely responsible for mobilization of the soil organic P pool, and the released P is taken up by extraradical AM hyphae, which mediate its use for plant growth. However, the functional microbiome involved in organic P mineralization in the hyphosphere remains poorly understood. The aim of this study was to determine how AM hyphae-associated bacterial communities related to P turnover in the hyphosphere of leek (Allium porrum) respond to different forms of soil P. Using a compartmented microcosm, leek was grown with the AM fungus Funneliformis mosseae, and the extraradical mycelium of F. mosseae was allowed to grow into a separate hyphal compartment containing either no added P, or P as KH2PO4 or phytin. High-throughput sequencing showed that the alkaline phosphatase (ALP)-harboring bacterial community associated with the AM hyphae was dominated by Sinorhizobium, Bradyrhizobium, Pseudomonas, and Ralstonia and was significantly changed in response to different P treatments, with Pseudomonas showing higher relative abundance in organic P treatments than in control and inorganic P treatments. Pseudomonas was also the major genus harboring the ß-propeller phytase (BPP) gene in the hyphosphere, but the BPP-harboring community structure was not affected by the presence of different P forms. These results demonstrate the profound differences in ALP- and BPP-harboring bacterial communities in the hyphosphere at bacterial genus level, providing new insights to link bacteria and biogeochemical P cycling driven in association with mycorrhizal hyphae.


Subject(s)
Bacteria/metabolism , Phosphorus/metabolism , Soil Microbiology , Bacteria/classification , Bacteria/isolation & purification , Glomeromycota/growth & development , Glomeromycota/metabolism , Hyphae/growth & development , Hyphae/metabolism , Mycorrhizae/growth & development , Mycorrhizae/metabolism , Phosphorus/analysis , Soil/chemistry
13.
Ecotoxicol Environ Saf ; 178: 66-78, 2019 Aug 30.
Article in English | MEDLINE | ID: mdl-30999182

ABSTRACT

Salt stress disturbs redox homeostasis by perturbing equilibrium between generation and removal of reactive oxygen species (ROS), which alters the normal metabolism of plants through membrane damage, lipid peroxidation and denaturation of proteins. Salicylic acid (SA) seed priming and arbuscular mycorrhizal (AM) fungi impart salt tolerance in legumes by maintaining redox balance. The present investigation focused on the relative and combined applications of SA and Rhizoglomus intraradices in scavenging ROS in Cicer arietinum L. (chickpea) genotypes (salt tolerant-PBG 5, relatively sensitive-BG 256) subjected to salt stress. Despite the enhanced antioxidant mechanisms under salt stress, ROS (superoxide, O2- and hydrogen peroxide, H2O2) accumulation increased significantly and induced lipid peroxidation and lipoxygenase (LOX) activities, which disrupted membrane stability, more in BG 256 than PBG 5. Salt stress also caused redox imbalance by lowering ascorbate/dehydroascorbate (ASA/DHA) and reduced glutathione/oxidized glutathione (GSH/GSSG) ratios, indicating that redox-homeostasis was crucial for salt-tolerance. Exogenous SA was more promising in reducing ROS-generation and lipid-peroxidation, which provided higher membrane stability as compared to AM inoculation. Although, the enzymatic antioxidants were more active in SA treated plants, yet, AM inoculation outperformed in increasing reformative enzyme activities of Foyer-Halliwell-Asada cycle, which resulted in higher plant biomass in a genotype-dependent manner. SA increased AM root colonization and provided functional complementarity to R. intraradices and thereby strengthening antioxidant defense mechanisms through their cumulative contribution. The study suggested the use of +SA+AM as an eco-friendly tool in imparting salt tolerance in chickpea genotypes subjected to long-term salinity.


Subject(s)
Antioxidants/metabolism , Cicer/metabolism , Glomeromycota/metabolism , Mycorrhizae/metabolism , Salicylic Acid/pharmacology , Salt Stress , Ascorbic Acid/metabolism , Cicer/drug effects , Cicer/microbiology , Genotype , Oxidation-Reduction , Oxidative Stress/drug effects , Salicylic Acid/metabolism , Salt Tolerance , Seeds/drug effects , Seeds/metabolism , Seeds/microbiology , Symbiosis
14.
New Phytol ; 221(3): 1556-1573, 2019 02.
Article in English | MEDLINE | ID: mdl-30368822

ABSTRACT

Arbuscular mycorrhizal (AM) fungi form endosymbioses with most plants, and they themselves are hosts for Mollicutes/Mycoplasma-related endobacteria (MRE). Despite their significance, genomic information for AM fungi and their MRE are relatively sparse, which hinders our understanding of their biology and evolution. We assembled the genomes of the AM fungus Diversispora epigaea (formerly Glomus versiforme) and its MRE and performed comparative genomics and evolutionary analyses. The D. epigaea genome showed a pattern of substantial gene duplication and differential evolution of gene families, including glycosyltransferase family 25, whose activities are exclusively lipopolysaccharide biosynthesis. Genes acquired by horizontal transfer from bacteria possibly function in defense against foreign DNA or viruses. The MRE population was diverse, with multiple genomes displaying characteristics of differential evolution and encoding many MRE-specific genes as well as genes of AM fungal origin. Gene family expansion in D. epigaea may enhance adaptation to both external and internal environments, such as expansion of kinases for signal transduction upon external stimuli and expansion of nucleoside salvage pathway genes potentially for competition with MRE, whose genomes lack purine and pyrimidine biosynthetic pathways. Collectively, this metagenome provides high-quality references and begins to reveal the diversity within AM fungi and their MRE.


Subject(s)
Biological Evolution , Genome, Fungal , Glomeromycota/genetics , Mycoplasma/physiology , Mycorrhizae/genetics , Symbiosis/genetics , Tenericutes/physiology , Gene Duplication , Gene Transfer, Horizontal/genetics , Genes, Fungal , Glomeromycota/metabolism , Multigene Family , Phylogeny , Spores, Fungal/physiology
15.
BMC Plant Biol ; 18(1): 289, 2018 Nov 21.
Article in English | MEDLINE | ID: mdl-30463523

ABSTRACT

BACKGROUND: Arbuscular mycorrhizal (AM) fungi form symbiotic associations with host plants can protect host plants against diverse biotic and abiotic stresses, and promote biodegradation of various contaminants. However, the molecular mechanisms of how the arbuscular mycorrhizal fungi and host plant association on atrazine stress were still poorly understood. To better characterize how arbuscular mycorrhizal fungi and host plant interactions increase atrazine stress, we performed physiological and proteomic analysis of Funneliformis mosseae (mycorrhizal fungi) and Medicago sativa (alfalfa) association under atrazine stress. RESULTS: The results showed that in the Arbuscular mycorrhizal, protective enzymes were up regulated and the malondialdehyde content increased relative to those of non-mycorrhizal M.sativa. We also examined the atrazine degradation rates within the nutrient solution, and a 44.43% reduction was observed with the mycorrhizal M.sativa, with 30.83% of the reduction attributed to F. mosseae. The accumulation content in root and stem of mycorrhizal M.sativa were obviously increased 11.89% and 16.33% than those of non- mycorrhizal M.sativa. The activity of PPO, POD, CAT and SOD in mycorrhizal M.sativa were obviously higher than non mycorrhizal M.sativa under atrazine stess. We identified differential root proteins using isobaric tags for relative and absolute quantization coupled with liquid chromatography-mass spectrometry, with 533 proteins identified (276 unregulated and 257 downregulated). The differentially expressed proteins were further examined using GO, BLAST comparisons, and a literature inquiry and were classified into the categories of atrazine degradation (37.1%); atrazine stress response (28.6%); plant immune responses (14.3%); translation, synthesis, and processing (10%); and signal transduction and biological processes (10%). Furthermore, we identified glycosyl transferase, glutathione S-transferase, laccase, cytochrome P450 monooxygenase, peroxidase, and other proteins closely related to the degradation process. CONCLUSIONS: Mycorrhizal Medicago showed improved atrazine degradation within the culturing medium and increased atrazine enrichment in the roots and stems. Additionally, AMF increased the plant root response to atrazine, with relevant enzymes up regulated and toxic effects alleviated. Overall, the findings of this study show that AMF played an important role in easing atrazine stress in plants and contributed to atrazine remediation and further contributed to the understanding of the molecular mechanism associated with atrazine stresses and potential mycorrhizal contributions in M.sativa.


Subject(s)
Atrazine/toxicity , Glomeromycota/metabolism , Herbicides/toxicity , Medicago sativa/metabolism , Mycorrhizae/metabolism , Proteome/drug effects , Soil Pollutants/toxicity , Atrazine/metabolism , Biodegradation, Environmental , Glomeromycota/drug effects , Herbicides/metabolism , Medicago sativa/drug effects , Medicago sativa/microbiology , Mycorrhizae/drug effects , Plant Proteins/metabolism , Soil Pollutants/metabolism , Symbiosis
16.
Microbes Environ ; 33(3): 257-263, 2018 Sep 29.
Article in English | MEDLINE | ID: mdl-30122692

ABSTRACT

Arbuscular mycorrhizal (AM) fungi can improve plant tolerance to heavy metal contamination. This detoxification ability may largely depend on how AM fungi influence the uptake and distribution of metals in host plants. Two experiments were performed in order to gain insights into the mechanisms underlying cadmium (Cd) tolerance in mycorrhizal plants. Stable isotope Cd106 and compartmented pots were adopted to quantify the contribution of the AM fungus, Rhizophagus irregularis, to the uptake of Cd by Lotus japonicus. Moreover, synchrotron radiation µX-ray fluorescence (SR-µXRF) was applied to localize Cd in the mycorrhizal roots at the sub-cellular level. The results obtained indicated that mycorrhizal colonization markedly enhanced Cd immobilization in plant roots. Less Cd was partitioned to plant shoots when only hyphae had access to Cd in the hyphal compartment than when roots also had direct access to the Cd pool. SR-µXRF imaging indicated that Cd absorbed by extraradical hyphae was translocated into intraradical fungal structures, in which arbuscules accumulated large amounts of Cd; however, plant cells without fungal structures and plant cell walls contained negligible amounts of Cd. The present results provide direct evidence for the intraradical immobilization of Cd absorbed by AM fungi, which may largely contribute to the enhanced tolerance of plants to Cd. Therefore, AM fungi may play a role in the phytostabilization of Cd-contaminated soil.


Subject(s)
Cadmium/metabolism , Glomeromycota/metabolism , Lotus/metabolism , Lotus/microbiology , Mycorrhizae/metabolism , Soil Pollutants/metabolism , Spectrometry, X-Ray Emission , Biodegradation, Environmental , Biological Transport , Plant Roots/chemistry , Plant Roots/metabolism , Plant Roots/microbiology , Plant Shoots/chemistry , Plant Shoots/metabolism , Synchrotrons
17.
Fungal Biol ; 122(9): 918-927, 2018 09.
Article in English | MEDLINE | ID: mdl-30115326

ABSTRACT

In this study, we report the effects of arbuscular mycorrhizal fungi (AMF) and increasing doses of phosphorus (P) on the growth and production of secondary metabolites in Mimosa tenuiflora, a medicinal species native to Brazil. We used a completely randomized design with four inoculation treatments: Control not inoculated (1); Claroideoglomus etunicatum (2); Gigaspora albida (3); and C. etunicatum + G. albida (4) and four doses of P; P0 - baseline dose, P8, P16 and P32. After 70 d in a greenhouse, growth, mycorrhizal variables, biochemical and phytochemical parameters were evaluated. Compared to non-mycorrhizal plants, mycorrhized M. tenuiflora seedlings showed greater: growth, greater photosynthetic performance and content of soluble carbohydrates and secondary metabolites, with the most significant benefits occurring in soil with low to moderate P content (up to 16 mg kg-1). The plant growth is severely restricted at low P levels, but the addition of AMF appears to remove this limiting factor. Although M. tenuiflora responds to levels of phosphate fertilization, it responds well to mycorrhizal inoculation, especially with G. albida, which promotes benefits for the initial growth and secondary metabolite content in this plant species of medical and potential commercial interest and may be used instead of phosphate fertilizer.


Subject(s)
Glomeromycota/metabolism , Mimosa/growth & development , Mimosa/metabolism , Mimosa/microbiology , Mycorrhizae/metabolism , Secondary Metabolism , Brazil , Phosphorus/metabolism
18.
Int J Mol Sci ; 19(8)2018 Jul 24.
Article in English | MEDLINE | ID: mdl-30042347

ABSTRACT

Continuous cropping in soybean is increasingly practiced in Heilongjiang Province, leading to substantial yield reductions and quality degradation. Arbuscular mycorrhizal fungi (AMF) are soil microorganisms that form mutualistic interactions with plant roots and can restore the plant rhizosphere microenvironment. In this study, two soybean lines (HN48 and HN66) were chosen as experimental materials, which were planted in different years of continuous cropping soybean soils and were inoculated or not with Funneliformis mosseae in potted-experiments. Ultimately, analysis of root tissue metabolome and root exudates, soil physicochemical properties, plant biomass, as well as rhizosphere soil properties in different experimental treatments, inoculated or not with F. mosseae, was performed. Experimental results showed that: (a) The disease index of soybean root rot was significantly lower in the treatment group than in the control group, and there were differences in disease index and the resistance effect of F. mosseae between the two cultivars; (b) compared with the control, the root tissue metabolome and root exudates remained unchanged, but there were changes in the relative amounts in the treatment group, and the abundant metabolites differed by soybean cultivar; (c) soybean biomass was significantly higher in the treatment group than in the control group, and the effect of F. mosseae on biomass differed with respect to the soybean cultivar; and (d) there were differences in the physiochemical indexes of soybean rhizosphere soil between the treatment and control groups, and the repairing effect of F. mosseae differed between the two cultivars. Therefore, F. mosseae can increase the biomass of continuously cropped soybean, improve the physicochemical properties of the rhizosphere soil, regulate the root metabolite profiles, and alleviate barriers to continuous cropping in potted-experiments of soybean.


Subject(s)
Glomeromycota/metabolism , Glycine max/microbiology , Plant Roots/metabolism , Plant Roots/microbiology , Rhizosphere , Agriculture , Chemical Phenomena , Crops, Agricultural/growth & development , Crops, Agricultural/microbiology , Glomeromycota/growth & development , Metabolome , Plant Exudates/analysis , Soil/chemistry , Soil Microbiology , Glycine max/growth & development
19.
Mycorrhiza ; 28(5-6): 465, 2018 Aug.
Article in English | MEDLINE | ID: mdl-29951863

ABSTRACT

Arbuscular mycorrhizal (AM) fungi can significantly contribute to plant nitrogen (N) uptake from complex organic sources, most likely in concert with activity of soil saprotrophs and other microbes releasing and transforming the N bound in organic forms. Here, we tested whether AM fungus (Rhizophagus irregularis) extraradical hyphal networks showed any preferences towards certain forms of organic N (chitin of fungal or crustacean origin, DNA, clover biomass, or albumin) administered in spatially discrete patches, and how the presence of AM fungal hyphae affected other microbes. By direct 15N labeling, we also quantified the flux of N to the plants (Andropogon gerardii) through the AM fungal hyphae from fungal chitin and from clover biomass. The AM fungal hyphae colonized patches supplemented with organic N sources significantly more than those receiving only mineral nutrients, organic carbon in form of cellulose, or nothing. Mycorrhizal plants grew 6.4-fold larger and accumulated, on average, 20.3-fold more 15N originating from the labeled organic sources than their nonmycorrhizal counterparts. Whereas the abundance of microbes (bacteria, fungi, or Acanthamoeba sp.) in the different patches was primarily driven by patch quality, we noted a consistent suppression of the microbial abundances by the presence of AM fungal hyphae. This suppression was particularly strong for ammonia oxidizing bacteria. Our results indicate that AM fungi successfully competed with the other microbes for free ammonium ions and suggest an important role for the notoriously understudied soil protists to play in recycling organic N from soil to plants via AM fungal hyphae.


Subject(s)
Andropogon/growth & development , Glomeromycota/metabolism , Nitrogen/metabolism , Ammonia/chemistry , Andropogon/metabolism , Andropogon/microbiology , Biomass , Hyphae/metabolism , Mycorrhizae/growth & development , Mycorrhizae/metabolism , Soil Microbiology
20.
Environ Pollut ; 240: 557-565, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29758530

ABSTRACT

To investigate the effect of arbuscular mycorrhizal fungi (AMF) on boron (B) toxicity in plants under the combined stresses of salt and drought, Puccinellia tenuiflora was grown in the soil with the inoculation of Funneliformis mosseae and Claroideoglomus etunicatum. After three weeks of treatment, the plants were harvested to determine mycorrhizal colonization rates, plant biomass, as well as tissue B, phosphorus, sodium, and potassium concentrations. The results show that the combined stresses reduced mycorrhizal colonization. Mycorrhizal inoculation significantly increased plant biomass while reduced shoot B concentrations. Mycorrhizal inoculation also slightly increased shoot phosphorus and potassium concentrations, and reduced shoot sodium concentrations. F. mosseae and C. etunicatum were able to alleviate the combined stresses of B, salt, and drought. The two fungal species and their combination showed no significant difference in the alleviation of B toxicity. It is inferred that AMF is able to alleviate B toxicity in P. tenuiflora by increasing biomass and reducing tissue B concentrations. The increase in plant phosphorus and potassium, as well as the decrease in sodium accumulation that induced by AMF, can help plant tolerate the combined stresses of salt and drought. Our findings suggest that F. mosseae and C. etunicatum are potential candidates for facilitating the phytoremediation of B-contaminated soils with salt and drought stress.


Subject(s)
Boron/toxicity , Glomeromycota/metabolism , Mycorrhizae/metabolism , Poaceae/microbiology , Biodegradation, Environmental , Biomass , Droughts , Phosphorus/analysis , Plant Roots/microbiology , Plants , Potassium/analysis , Sodium/analysis , Sodium Chloride , Soil
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