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1.
Plant J ; 94(4): 583-594, 2018 05.
Article in English | MEDLINE | ID: mdl-29543357

ABSTRACT

Sucrose has long been thought to play an osmolytic role in stomatal opening. However, recent evidence supports the idea that the role of sucrose in this process is primarily energetic. Here we used a combination of stomatal aperture assays and kinetic [U-13 C]-sucrose isotope labelling experiments to confirm that sucrose is degraded during light-induced stomatal opening and to define the fate of the C released from sucrose breakdown. We additionally show that addition of sucrose to the medium did not enhance light-induced stomatal opening. The isotope experiment showed a consistent 13 C enrichment in fructose and glucose, indicating that during light-induced stomatal opening sucrose is indeed degraded. We also observed a clear 13 C enrichment in glutamate and glutamine (Gln), suggesting a concerted activation of sucrose degradation, glycolysis and the tricarboxylic acid cycle. This is in contrast to the situation for Gln biosynthesis in leaves under light, which has been demonstrated to rely on previously stored C. Our results thus collectively allow us to redraw current models concerning the influence of sucrose during light-induced stomatal opening, in which, instead of being accumulated, sucrose is degraded providing C skeletons for Gln biosynthesis.


Subject(s)
Arabidopsis/physiology , Glutamine/biosynthesis , Glycolysis , Sucrose/metabolism , Arabidopsis/radiation effects , Carbon Isotopes/analysis , Glutamic Acid/metabolism , Glutamic Acid/radiation effects , Glutamine/radiation effects , Kinetics , Light , Plant Leaves/physiology , Plant Leaves/radiation effects , Plant Stomata/physiology , Plant Stomata/radiation effects , Sucrose/radiation effects
2.
J Chem Phys ; 142(21): 215106, 2015 Jun 07.
Article in English | MEDLINE | ID: mdl-26049530

ABSTRACT

Salt bridges and ionic interactions play an important role in protein stability, protein-protein interactions, and protein folding. Here, we provide the classical MD simulations of the structure and IR signatures of the arginine (Arg)-glutamate (Glu) salt bridge. The Arg-Glu model is based on the infinite polyalanine antiparallel two-stranded ß-sheet structure. The 1 µs NPT simulations show that it preferably exists as a salt bridge (a contact ion pair). Bidentate (the end-on and side-on structures) and monodentate (the backside structure) configurations are localized [Donald et al., Proteins 79, 898-915 (2011)]. These structures are stabilized by the short (+)N-H⋯O(-) bonds. Their relative stability depends on a force field used in the MD simulations. The side-on structure is the most stable in terms of the OPLS-AA force field. If AMBER ff99SB-ILDN is used, the backside structure is the most stable. Compared with experimental data, simulations using the OPLS all-atom (OPLS-AA) force field describe the stability of the salt bridge structures quite realistically. It decreases in the following order: side-on > end-on > backside. The most stable side-on structure lives several nanoseconds. The less stable backside structure exists a few tenth of a nanosecond. Several short-living species (solvent shared, completely separately solvated ionic groups ion pairs, etc.) are also localized. Their lifetime is a few tens of picoseconds or less. Conformational flexibility of amino acids forming the salt bridge is investigated. The spectral signature of the Arg-Glu salt bridge is the IR-intensive band around 2200 cm(-1). It is caused by the asymmetric stretching vibrations of the (+)N-H⋯O(-) fragment. Result of the present paper suggests that infrared spectroscopy in the 2000-2800 frequency region may be a rapid and quantitative method for the study of salt bridges in peptides and ionic interactions between proteins. This region is usually not considered in spectroscopic studies of peptides and proteins.


Subject(s)
Arginine/radiation effects , Glutamic Acid/radiation effects , Infrared Rays , Molecular Dynamics Simulation , Peptides/chemistry , Peptides/radiation effects , Salts/radiation effects , Arginine/chemistry , Glutamic Acid/chemistry , Models, Molecular , Nucleic Acid Conformation , Salts/chemistry , Spectrophotometry, Infrared , Vibration
3.
Bratisl Lek Listy ; 116(2): 101-3, 2015.
Article in English | MEDLINE | ID: mdl-25665475

ABSTRACT

BACKGROUND: Long term exposure to low level electromagnetic radiation (LLER) by using cellular phones causes serious health problems. METHODS: Ten male Wistar Albino rats were anesthetized 30 min before the LLER exposure, 0.5 ml blood was taken from the tail vein of rats in order to determine control values. Rats were grouped by three and placed on a plexi-glass flat. A fixed equivalent frequency emitter device was used. A sign to be an electromagnetic field 15.14 V/m (608 mW/m(2)) in strength in the head region with 100 kHz FM modulation at 900 MHz was applied to the animals. After calculating the ideal position for the device, electromagnetic LLER energy was applied for 45 minutes from a distance to be equal with energy transmitted by a mobile phone from a 0.5-1 cm distance to their head regions. After 1.5 hours and before the rats awoke, 0.5 ml of blood was taken from the tail veins in order to determine the treatment values. RESULTS: Plasma 5-HT and glutamate levels were measured by enzyme immunoassay (EIA) using commercial kits. It was found that a single 45 min of LLER exposure increased the blood 5-HT level significantly, but did not change the glutamate level of rats. CONCLUSION: It was concluded that even a single 45 min of LLER exposure may produce an increase in 5-HT level without changing the blood glutamate level. Increased 5-HT level may lead to a retarded learning and a deficit in spatial memory (Tab. 2, Fig. 2, Ref. 24).


Subject(s)
Cell Phone , Electromagnetic Fields/adverse effects , Electromagnetic Radiation , Glutamic Acid/blood , Glutamic Acid/radiation effects , Serotonin/blood , Serotonin/radiation effects , Animals , Biological Transport/radiation effects , Homeostasis/radiation effects , Male , Memory/radiation effects , Rats , Rats, Wistar , Risk Factors
5.
J Neural Eng ; 8(4): 046002, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21623008

ABSTRACT

Digital holography is an emerging technology that can generate complex light patterns for controlling the excitability of neurons and neural circuits. The strengths of this technique include a high efficiency with which available light can be effectively utilized and the ability to deliver highly focused light to multiple locations simultaneously. Here we demonstrate another strength of digital holography: the ability to generate instantaneous three-dimensional light patterns. This capability is demonstrated with the photolysis of caged glutamate on the dendritic arbor of hippocampal neurons, to study the nature of the integration of inputs arriving on multiple dendritic branches.


Subject(s)
Dendrites/physiology , Holography/methods , Photic Stimulation/instrumentation , Algorithms , Dendritic Spines/physiology , Glutamic Acid/chemistry , Glutamic Acid/radiation effects , Hippocampus/cytology , Hippocampus/radiation effects , Light , Neural Pathways/physiology , Neurons/physiology , Photolysis , Software
6.
Article in English | MEDLINE | ID: mdl-21393055

ABSTRACT

An EPR study has been carried out to investigate the structure and behaviour of the free radical formed γ-irradiated l-alaninamide hydrochloride, dl-glutamic acid monohydrate and N-(2-carboxyethyl) iminodiacetic acid powders at room temperature. The observed paramagnetic species have been attributed to the CH(3)CHCONH(2), HOOCCH(2)CH(2)CHCOOH and HOOCCH(2)CH(2)NCHCH(2)(COOH)(2) radicals, respectively. Some spectroscopic properties and suggestions concerning possible structure of the radicals were also discussed in this study.


Subject(s)
Amino Acids/radiation effects , Free Radicals/chemistry , Gamma Rays , Imino Acids/radiation effects , Alanine/radiation effects , Computer Simulation , Electron Spin Resonance Spectroscopy , Glutamic Acid/radiation effects , Powders , Temperature
7.
J Struct Biol ; 174(2): 385-90, 2011 May.
Article in English | MEDLINE | ID: mdl-21335090

ABSTRACT

Enhanced Green Fluorescent Protein (EGFP) is a variant of wild-type Green Fluorescent Protein from the jellyfish Aequorea victoria, whose mutations S65T and F64L increase brightness and folding efficiency. EGFP is extensively used in cell biology and biochemistry as a colocalization or expression reporter. Surprisingly, the structure of this very popular protein has not been determined yet. We report here its crystallographic structure at 1.5Å resolution which shows significant differences in the vicinity of residue 64 and of the chromophore. In particular, two conformations are observed for the key residue glutamic acid 222, in apparent contradiction with the single fluorescence lifetime of the protein. We then show that X-ray induced decarboxylation of Glu222 during diffraction data collection results in the disruption of a hydrogen-bond network near the chromophore. Using single-crystal microspectrophotometry, we demonstrate that this correlates with a significant loss of the fluorescence properties. We thus propose a mechanism of bleaching of the protein at low temperature. Taken together, these two sets of results highlight the stabilizing role of Glu222 to the chromophore cavity of EGFP.


Subject(s)
Glutamic Acid/chemistry , Green Fluorescent Proteins/chemistry , Animals , Crystallography, X-Ray , Fluorescence , Glutamic Acid/radiation effects , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/radiation effects , Hydra , Mutation , Protein Stability , Protein Structure, Tertiary
9.
J Neurooncol ; 90(1): 35-9, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18563297

ABSTRACT

OBJECTIVE: The metabolism of malignant glioma was studied in 13 patients. The main objective was to perform a study of the metabolic pattern of glucose, lactate, pyruvate, glutamate and glycerol in tumour tissue during base-line conditions and to detect any changes in the metabolism during radiotherapy. METHOD: During a stereotactic biopsy, two microdialysis catheters were implanted: one in tumour and one in peri-tumoural tissue. Fasting samples were analysed daily, before and during 5 days of radiotherapy given with 2 Gy fractions. RESULTS: Base-line levels of glucose and pyruvate were significantly lower in tumour compared to peri-tumoural tissue (P = 0.04 and 0.023, respectively). The lactate/pyruvate ratio was significantly higher in tumour tissue (P = 0.022). In general, the levels of lactate, glutamate and glycerol were higher in tumour tissue, although not statistically significant. Further, we could not detect any significant changes during the 5 days of radiotherapy in any of the metabolites analysed. CONCLUSION: Radiotherapy up to 10 Gy given in five fractions does not influence the glucose metabolism nor does it induce any acute cytotoxic effect detected with glutamate or glycerol in malignant glioma, as assessed by microdialysis. The study confirms the glycolytic properties of glucose metabolism in malignant glioma.


Subject(s)
Brain Neoplasms/metabolism , Glioma/metabolism , Glucose/radiation effects , Glutamic Acid/radiation effects , Glycerol/radiation effects , Brain Neoplasms/radiotherapy , Brain Neoplasms/surgery , Glioma/radiotherapy , Glioma/surgery , Glucose/metabolism , Glutamic Acid/metabolism , Glycerol/metabolism , Humans , Microdialysis , Radiosurgery
12.
J Neurophysiol ; 91(4): 1706-15, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15010497

ABSTRACT

A pathway from the superficial visual layers to the intermediate premotor layers of the superior colliculus has been proposed to mediate visually guided orienting movements. In these experiments, we combined photostimulation using "caged" glutamate with in vitro whole cell patch-clamp recording to demonstrate this pathway in the rat. Photostimulation in the superficial gray and optic layers (SGS and SO, respectively) evoked synaptic responses in intermediate gray layer (SGI) cells. The responses comprised individual excitatory postsynaptic currents (EPSCs) or EPSC clusters. Blockade of these EPSCs by TTX confirmed that they were synaptically mediated. Stimulation within a column (approximately 500 microm diam) extending superficially from the recorded cell evoked the largest and most reliable responses, but off-axis stimuli were effective as well. The EPSCs could be evoked by stimuli 1,000 microm off-axis from the postsynaptic neuron. The dimensions of this wider region (approximately 2 mm diam) corresponded to those of the dendrites of superficial layer wide-field neurons. SGI neurons differed in their input from SGS and SO; neurons in the middle of the intermediate layer (SGIb) were less likely to respond to visual layer photostimulation than were those in sublayers just above and below them. However, focal stimulation within SGIa did evoke responses within SGIb, indicating that SGIb neurons may receive input from the visual layers indirectly. These results demonstrate a columnar pathway that may mediate visually guided orienting movements, but the results also reveal spatial attributes of the pathway which imply that it also plays a more complex role in visuomotor integration.


Subject(s)
Neural Pathways/physiology , Neurons/cytology , Neurons/physiology , Superior Colliculi/physiology , Anesthetics, Local/pharmacology , Animals , Animals, Newborn , Dendrites/drug effects , Dendrites/radiation effects , Evoked Potentials/drug effects , Evoked Potentials/radiation effects , Excitatory Postsynaptic Potentials/drug effects , Excitatory Postsynaptic Potentials/radiation effects , Glutamic Acid/pharmacology , Glutamic Acid/radiation effects , In Vitro Techniques , Neural Inhibition/drug effects , Neural Inhibition/radiation effects , Neural Pathways/cytology , Neural Pathways/drug effects , Neural Pathways/radiation effects , Neurons/drug effects , Neurons/radiation effects , Patch-Clamp Techniques/methods , Photic Stimulation/methods , Photolysis , Probability , Rats , Superior Colliculi/cytology , Superior Colliculi/drug effects , Superior Colliculi/radiation effects , Synaptic Transmission/drug effects , Synaptic Transmission/radiation effects , Tetrodotoxin/pharmacology
13.
Biophys J ; 86(3): 1673-81, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14990495

ABSTRACT

We recorded (13)C NMR spectra of [3-(13)C]Ala- and [1-(13)C]Val-labeled bacteriorhodopsin (bR) and a variety of its mutants, E9Q, E74Q, E194Q/E204Q (2Glu), E9Q/E194Q/E204Q (3Glu), and E9Q/E74Q/E194Q/E204Q (4Glu), to clarify contributions of the extracellular (EC) Glu residues to the conformation and dynamics of bR. Replacement of Glu-9 or Glu-74 and Glu-194/204 at the EC surface by glutamine(s) induced significant conformational changes in the cytoplasmic (CP) surface structure. These changes occurred in the C-terminal alpha-helix and loops, and also those of the EC surface, as viewed from (13)C NMR spectra of [3-(13)C]Ala- and [1-(13)C]Val-labeled proteins. Additional conformational changes in the transmembrane alpha-helices were induced as modified retinal-protein interactions for multiple mutants involving the E194Q/E204Q pair. Significant dynamic changes were induced for the triple or quadruple mutants, as shown by broadened (13)C NMR peaks of [1-(13)C]Val-labeled proteins. These changes were due to acquired global fluctuation motions of the order of 10(-4)-10(-5) s as a result of disorganized trimeric form. In such mutants (13)C NMR signals from Val residues of [1-(13)C]Val-labeled triple and quadruple mutants near the CP and EC surfaces (including 8.7-A depth from the surface) were substantially suppressed, as shown by comparative (13)C NMR studies with and without 40 micro M Mn(2+) ion. We conclude that these Glu residues at the EC surface play an important role in maintaining the native secondary structure of bR in the purple membrane.


Subject(s)
Bacteriorhodopsins/chemistry , Bacteriorhodopsins/radiation effects , Extracellular Space/chemistry , Glutamic Acid/chemistry , Glutamic Acid/radiation effects , Magnetic Resonance Spectroscopy/methods , Amino Acid Substitution , Carbon Isotopes , Cell Membrane/chemistry , Light , Motion , Mutagenesis, Site-Directed , Protein Conformation/radiation effects , Protein Structure, Secondary , Protein Structure, Tertiary , Structure-Activity Relationship
14.
Eur Radiol ; 13(5): 994-1000, 2003 May.
Article in English | MEDLINE | ID: mdl-12695820

ABSTRACT

Proton MR spectroscopy was used to observe long-term post-irradiation metabolic changes in epileptogenic tissue and in the contralateral parts of the brain which are not available with conventional imaging methods. We studied these changes in the temporal lobe in six patients, following radiosurgery on the amygdala and hippocampus. (1)H MR spectroscopy at 1.5 T with short and long echo times (TE=10 and 135 ms) were used together with standard MR imaging sequences (T1-, T2-weighted). The treatment was performed by Leksell Gamma Knife with a dose of 50 Gy to the center and a 50% isodose to the margin of the target, represented by the mean volume of approximately 7.5 ml. Magnetic resonance imaging and MR spectroscopy examinations were performed at least once per year for 3 years. The most significant changes in spectra were observed approximately 1 year after the irradiation when edema in irradiated area was observed and strong signal of lipids was identified. Later, edema and lipid signals disappeared and follow-up was characterized by a decrease of NAA, Cr, and Cho concentrations in the ipsilateral region of the brain to the irradiation (LCModel calculation from voxel of interest 3.8-4.5 ml positioned into the centrum of target volume). The concentration of NAA, Cr, and Cho after radiosurgery was significantly different from control values ( p<0.05) and also from concentrations in the contralateral part of the brain ( p<0.05). In the contralateral part, the concentration of NAA was significantly increased ( p<0.05) (NAA: before treatment 8.81, after treatment 11.33 mM). No radiotoxic changes were observed in the contralateral part of the brain or behind the area of target volume. The MR spectroscopy findings precluded MRI observation and MRS results completed data about the development of radiotoxic changes in the target volume.


Subject(s)
Aspartic Acid/analogs & derivatives , Epilepsy, Temporal Lobe/diagnosis , Epilepsy, Temporal Lobe/surgery , Radiosurgery , Adult , Aspartic Acid/metabolism , Aspartic Acid/radiation effects , Brain/metabolism , Brain/radiation effects , Brain Neoplasms/diagnosis , Brain Neoplasms/metabolism , Brain Neoplasms/surgery , Choline/metabolism , Choline/radiation effects , Creatine/metabolism , Creatine/radiation effects , Epilepsy, Temporal Lobe/metabolism , Female , Follow-Up Studies , Glutamic Acid/metabolism , Glutamic Acid/radiation effects , Glutamine/metabolism , Glutamine/radiation effects , Humans , Lipid Metabolism , Lipids/radiation effects , Magnetic Resonance Imaging , Magnetic Resonance Spectroscopy , Male , Postoperative Complications/diagnosis , Postoperative Complications/etiology , Postoperative Complications/metabolism , Radiation Injuries/diagnosis , Radiation Injuries/etiology , Radiation Injuries/metabolism , Radiation Tolerance/physiology , Radiosurgery/adverse effects , Seizures/diagnosis , Seizures/etiology , Seizures/metabolism , Time Factors , Treatment Failure
15.
Org Lett ; 2(11): 1545-7, 2000 Jun 01.
Article in English | MEDLINE | ID: mdl-10841475

ABSTRACT

[equation--see text] Introducing 3-methoxy or 3,5-dimethoxy substituents on the 4-hydroxyphenacyl (pHP) photoremovable protecting group has been explored with two excitatory gamma-amino acids, L-glutamic acid and gamma-amino butyric acid (GABA). These substituents significantly extend the absorption range of the pHP chromophore, e.g., the tail of absorption bands of 2a,b extend above 400 nm, well beyond the absorptions of aromatic amino acids and nucleotides. Irradiation releases the amino acids with rate constants of approximately 10(7) s(-)(1) and appearance efficiencies (Phi(app)) of 0.03-0.04. The photoproducts are formed through the pHP excited triplet and are primarily products of photoreduction and photohydrolysis. 1a,b also rearranged to the phenylacetic acid 3.


Subject(s)
Photolysis , Acetophenones/chemistry , Acetophenones/radiation effects , Animals , Bicuculline/pharmacology , Electric Conductivity , Electrons , Glutamic Acid/chemistry , Glutamic Acid/pharmacology , Glutamic Acid/radiation effects , Hippocampus/cytology , Ion Channels/drug effects , Light , Luminescent Measurements , Neurons/drug effects , Neurons/physiology , Neurons/radiation effects , Rats , gamma-Aminobutyric Acid/chemistry , gamma-Aminobutyric Acid/pharmacology , gamma-Aminobutyric Acid/radiation effects
16.
Radiats Biol Radioecol ; 38(3): 405-10, 1998.
Article in Russian | MEDLINE | ID: mdl-9682735

ABSTRACT

The activity of aspartate aminotransferase, glutamate dehydrogenase in the liver of rats in 1, 7 and 15 days after gamma irradiation effect of the dose of 0.5 Gy on the background of consumption by animals of sodium nitrate, sodium nitrite and nitrosodiethylamine was studied. The combined influence of chemical agents and gamma irradiation modified the effects of nitro compounds-xenobiotics on processes of the synthesis and dissociation of the glutamic acid as well as the intensity of transamination of the reamination by aspartate aminotransferase.


Subject(s)
Aspartate Aminotransferases/drug effects , Aspartate Aminotransferases/radiation effects , Glutamate Dehydrogenase/drug effects , Glutamate Dehydrogenase/radiation effects , Glutamic Acid/metabolism , Glutamic Acid/radiation effects , Nitro Compounds/pharmacology , Amination/drug effects , Amination/radiation effects , Analysis of Variance , Animals , Aspartate Aminotransferases/metabolism , Deamination/drug effects , Deamination/radiation effects , Gamma Rays , Glutamate Dehydrogenase/metabolism , Liver/drug effects , Liver/enzymology , Liver/radiation effects , Male , Rats , Time Factors
17.
Bioelectromagnetics ; 19(1): 41-5, 1998.
Article in English | MEDLINE | ID: mdl-9453705

ABSTRACT

Combined parallel static and alternating magnetic fields cause a rapid change in the ionic current flowing through an aqueous glutamic acid solution when the alternating field frequency is equal to the cyclotron frequency. The current peak is 20-30% of the background direct current. The peak is observed with slow sweep in the alternating magnetic field frequency from 1 Hz-10 Hz. Only one resonance peak in the current is observed in this frequency range. The frequency corresponding to the peak is directly proportional to the static magnetic field. The above effect only arises at very small alternating field amplitude in the range from 0.02 microT-0.08 microT.


Subject(s)
Electromagnetic Fields , Glutamic Acid/radiation effects , Cyclotrons , Ions , Kinetics , Solutions , Water
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