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1.
Sci Rep ; 11(1): 16475, 2021 08 13.
Article in English | MEDLINE | ID: mdl-34389743

ABSTRACT

Processing of N-terminally elongated antigenic peptide precursors by Endoplasmic Reticulum Aminopeptidase 1 (ERAP1) is a key step in antigen presentation and the adaptive immune response. Although ERAP1 can efficiently process long peptides in solution, it has been proposed that it can also process peptides bound onto Major Histocompatibility Complex I molecules (MHCI). In a previous study, we suggested that the occasionally observed "ontο MHCI" trimming by ERAP1 is likely due to fast peptide dissociation followed by solution trimming, rather than direct action of ERAP1 onto the MHCI complex. However, other groups have proposed that ERAP1 can trim peptides covalently bound onto MHCI, which would preclude peptide dissociation. To explore this interaction, we constructed disulfide-linked MHCI-peptide complexes using HLA-B*08 and a 12mer kinetically labile peptide, or a 16mer carrying a phosphinic transition-state analogue N-terminus with high-affinity for ERAP1. Kinetic and biochemical analyses suggested that while both peptides could access the ERAP1 active site when free in solution, they were unable to do so when tethered in the MHCI binding groove. Our results suggest that MHCI binding protects, rather than promotes, antigenic peptide precursor trimming by ERAP1 and thus solution trimming is the more likely model of antigenic peptide processing.


Subject(s)
Aminopeptidases/metabolism , Histocompatibility Antigens Class I/metabolism , Minor Histocompatibility Antigens/metabolism , Catalytic Domain , HLA-B8 Antigen/metabolism , Protein Structure, Tertiary
2.
J Biol Chem ; 294(49): 18534-18544, 2019 12 06.
Article in English | MEDLINE | ID: mdl-31601650

ABSTRACT

Endoplasmic reticulum aminopeptidase 1 (ERAP1) and ERAP2 critically shape the major histocompatibility complex I (MHC I) immunopeptidome. The ERAPs remove N-terminal residues from antigenic precursor peptides and generate optimal-length peptides (i.e. 8-10-mers) to fit into the MHC class I groove. It is therefore intriguing that MHC class I molecules can present N-terminally extended peptides on the cell surface that can elicit CD8+ T-cell responses. This observation likely reflects gaps in our understanding of how antigens are processed by the ERAP enzymes. To better understand ERAPs' function in antigen processing, here we generated a nested set of N-terminally extended 10-20-mer peptides (RA) n AAKKKYCL covalently bound to the human leukocyte antigen (HLA)-B*0801. We used X-ray crystallography, thermostability assessments, and an ERAP1-trimming assay to characterize these complexes. The X-ray structures determined at 1.40-1.65 Å resolutions revealed that the residue extensions (RA) n unexpectedly protrude out of the A pocket of HLA-B*0801, whereas the AAKKKYCL core of all peptides adopts similar, bound conformations. HLA-B*0801 residue 62 was critical to open the A pocket. We also show that HLA-B*0801 and antigenic precursor peptides form stable complexes. Finally, ERAP1-mediated trimming of the MHC I-bound peptides required a minimal length of 14 amino acids. We propose a mechanistic model explaining how ERAP1-mediated trimming of MHC I-bound peptides in cells can generate peptides of canonical as well as noncanonical lengths that still serve as stable MHC I ligands. Our results provide a framework to better understand how the ERAP enzymes influence the MHC I immunopeptidome.


Subject(s)
Aminopeptidases/metabolism , Histocompatibility Antigens Class I/metabolism , Minor Histocompatibility Antigens/metabolism , Adaptive Immunity/physiology , Amino Acid Sequence , Aminopeptidases/chemistry , Antigen Presentation/physiology , CD8-Positive T-Lymphocytes/metabolism , Crystallography, X-Ray , HLA-B8 Antigen/metabolism , Histocompatibility Antigens Class I/chemistry , Humans , Minor Histocompatibility Antigens/chemistry , Protein Binding , X-Ray Diffraction
3.
Blood ; 131(1): 144-152, 2018 01 04.
Article in English | MEDLINE | ID: mdl-29092829

ABSTRACT

Patients refractory to platelet transfusions because of alloimmunization require HLA-matched platelets, which is only possible if a large HLA-typed donor pool is available. However, even then, patients with broad immunization or rare haplotypes may not have suitable donors. In these patients, transfusions with platelets showing low HLA class I expression may be an alternative to fully HLA-matched transfusions. In this study, we quantified the proportion of donors with consistently low HLA-B8, -B12, and -B35 expression on platelets using human monoclonal antibodies specific for these antigens. Furthermore, as model for in vivo clearance, antibody-mediated internalization of these platelets by macrophages was investigated. The expression of HLA-B8, -B12, or -B35 on platelets was extremely variable between individuals (coefficients of variation, 41.4% to 73.6%). For HLA-B8, but not for HLA-B12 or -B35, this variation was in part explained by zygosity. The variation was most pronounced in, but not exclusive to, platelets. Expression within one donor was consistent over time. Remarkably, 32% of 113 HLA-B8, 34% of 98 HLA-B12, and 9% of 66 HLA-B35 donors showed platelet antigen expression that was not or only minimally above background. Antibody-mediated internalization of platelets by macrophages correlated with antibody opsonization and antigen expression and was absent in platelets with low or minimal HLA expression. In conclusion, our findings indicate that a substantial proportion of donors have platelets with consistently low expression of specific HLA class I antigens. These platelets may be used to treat refractory patients with antibodies directed against these particular antigens, despite HLA mismatches.


Subject(s)
Blood Platelets/immunology , HLA-B Antigens/metabolism , HLA-B35 Antigen/metabolism , HLA-B8 Antigen/metabolism , Isoantibodies/immunology , Macrophages/metabolism , Tissue Donors , Blood Platelets/metabolism , HLA-B Antigens/immunology , HLA-B35 Antigen/immunology , HLA-B8 Antigen/immunology , Histocompatibility Testing , Humans , Macrophages/immunology , Patient Selection , Platelet Transfusion/standards
4.
J Autoimmun ; 88: 43-49, 2018 03.
Article in English | MEDLINE | ID: mdl-29037440

ABSTRACT

OBJECTIVE: To identify potential causative markers involved in the development of early-onset myasthenia gravis (EOMG) in the MHC and non-MHC regions that may interact with the HLA-B*08:01 allele. METHODS: We analyzed 583 MG patients and identified 5 patients homozygous for the disease-associated ancestral haplotype 8.1 (HLA-A*01:01, B*08:01, DRB1*03:01, DQB1*02:01). We also analyzed more than 9000 controls and selected 24 for further investigation. We subsequently conducted a fine mapping analysis through high-throughput sequencing of the MHC region (from upstream of the GPα5 gene to downstream of the ZBTB9 gene). For the interaction analysis we analyzed a total of 150,090 SNPs equally distributed throughout the genome in the individuals that were homozygous for the main susceptibility HLA allele HLA-B*08:01 and investigated the expression of the genes located close to the observed susceptibility variants. RESULTS: The overall coverage of the 4.79 Mb MHC region ranged between 96.57% and 97.41%. We identified 705 new variants in the MHC region (673 SNPs and 32 InDels). However, no significant differences were found between patients and controls within the MHC region of the ancestral 8.1 haplotype. As the susceptibility gene is considered to be located close to the HLA-B locus, complete sequencing of the surrounding 200 kb was carried out in the 5 patients and 24 controls. No significant differences where observed, suggesting that the HLA-B molecule itself is the susceptibility factor for EOMG. We also observed two new susceptibility loci specific for MG HLA*08:01 patients (P < 3.33 × 10-7). These loci map to an intronic OVCH1 variant (rs10492374; P = 1.90 × 10-8) and a 5' downstream CNPY2 variant (rs10783780; P = 3.33 × 10-7) on chromosome 12. Individuals heterozygous for GA*rs10492374 showed an increased expression of the OVCH1 gene. The rs10783780 genotypes were not associated with CNPY2 mRNA levels, but the MG HLA*08:01 patients present a lower expression of this gene than the healthy controls. CONCLUSION: Our results showed that when we control for the influence of the ancestral haplotype 8.1, no polymorphism was demonstrated to be associated with EOMG development within the MHC region suggesting that the HLA-B*08:01 allele is the unique genetic factor within the HLA region responsible for EOMG development in patients who carry the ancestral haplotype 8.1. Our study also identified two novel polymorphisms as risk factors for MG HLA-B*08:01 positive patients which regulate the expression of the OVCH1 and CNYP2 genes.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Endopeptidases/genetics , Genotype , HLA-B8 Antigen/genetics , Myasthenia Gravis/genetics , Adaptor Proteins, Signal Transducing/metabolism , Adolescent , Adult , Alleles , Endopeptidases/metabolism , Female , Gene Frequency , Genetic Loci , Genetic Predisposition to Disease , HLA-B8 Antigen/metabolism , High-Throughput Nucleotide Sequencing , Humans , Male , Middle Aged , Polymorphism, Single Nucleotide , Young Adult
5.
Nucleic Acids Res ; 45(W1): W344-W349, 2017 07 03.
Article in English | MEDLINE | ID: mdl-28407117

ABSTRACT

Peptides are extensively used to characterize functional or (linear) structural aspects of receptor-ligand interactions in biological systems, e.g. SH2, SH3, PDZ peptide-recognition domains, the MHC membrane receptors and enzymes such as kinases and phosphatases. NNAlign is a method for the identification of such linear motifs in biological sequences. The algorithm aligns the amino acid or nucleotide sequences provided as training set, and generates a model of the sequence motif detected in the data. The webserver allows setting up cross-validation experiments to estimate the performance of the model, as well as evaluations on independent data. Many features of the training sequences can be encoded as input, and the network architecture is highly customizable. The results returned by the server include a graphical representation of the motif identified by the method, performance values and a downloadable model that can be applied to scan protein sequences for occurrence of the motif. While its performance for the characterization of peptide-MHC interactions is widely documented, we extended NNAlign to be applicable to other receptor-ligand systems as well. Version 2.0 supports alignments with insertions and deletions, encoding of receptor pseudo-sequences, and custom alphabets for the training sequences. The server is available at http://www.cbs.dtu.dk/services/NNAlign-2.0.


Subject(s)
Algorithms , Neural Networks, Computer , Peptides/chemistry , Software , Amino Acid Sequence , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/chemistry , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism , Binding Sites , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/metabolism , Databases, Protein , Forkhead Transcription Factors/chemistry , Forkhead Transcription Factors/metabolism , HLA-A1 Antigen/chemistry , HLA-A1 Antigen/metabolism , HLA-B7 Antigen/chemistry , HLA-B7 Antigen/metabolism , HLA-B8 Antigen/chemistry , HLA-B8 Antigen/metabolism , HLA-DRB1 Chains/chemistry , HLA-DRB1 Chains/metabolism , Humans , Internet , Ligands , Peptides/metabolism , Protein Binding , Sequence Alignment , Trans-Activators/chemistry , Trans-Activators/metabolism
6.
J Immunol ; 198(5): 1838-1845, 2017 03 01.
Article in English | MEDLINE | ID: mdl-28148736

ABSTRACT

Initial studies associated the HLA class I A*01 and B*08 alleles with celiac disease (CD) susceptibility. Subsequent analyses showed a primary association with HLA class II alleles encoding for the HLA DQ2.5 molecule. Because of the strong linkage disequilibrium of A*01 and B*08 alleles with the DR3-DQ2.5 haplotype and a recent genome-wide association study indicating that B*08 and B*39 are predisposing genes, the etiologic role of HLA class I in CD pathogenesis needs to be addressed. We screened gliadin proteins (2α-, 2ω-, and 2γ-gliadin) using bioinformatic algorithms for the presence of peptides predicted to bind A*0101 and B*0801 molecules. The top 1% scoring 9- and 10-mer peptides (N = 97, total) were synthesized and tested in binding assays using purified A*0101 and B*0801 molecules. Twenty of ninety-seven peptides bound B*0801 and only 3 of 97 bound A*0101 with high affinity (IC50 < 500 nM). These 23 gliadin peptides were next assayed by IFN-γ ELISPOT for recognition in peripheral blood cells of CD patients and healthy controls carrying the A*0101 and/or B*0801 genes and in A*0101/B*0801- CD patients. Ten of the twenty-three peptides assayed recalled IFN-γ responses mediated by CD8+ T cells in A*0101/B*0801+ patients with CD. Two peptides were restricted by A*0101, and eight were restricted by B*0801. Of note, 50% (5/10) of CD8+ T cell epitopes mapped within the γ-gliadins. Our results highlight the value of predicted binding to HLA molecules for identifying gliadin epitopes and demonstrate that HLA class I molecules restrict the anti-gluten T cell response in CD patients.


Subject(s)
CD8-Positive T-Lymphocytes/immunology , Celiac Disease/immunology , Gliadin/immunology , HLA-A1 Antigen/immunology , HLA-B8 Antigen/immunology , Peptides/immunology , Adolescent , Adult , Algorithms , Carrier Proteins/immunology , Carrier Proteins/physiology , Celiac Disease/genetics , Celiac Disease/physiopathology , Child , Child, Preschool , Computational Biology , Enzyme-Linked Immunospot Assay , Epitopes, T-Lymphocyte/immunology , Female , Genes, MHC Class I , Glutens/immunology , HLA-A1 Antigen/genetics , HLA-A1 Antigen/metabolism , HLA-B8 Antigen/genetics , HLA-B8 Antigen/metabolism , Humans , Interferon-gamma/genetics , Interferon-gamma/immunology , Male , Middle Aged , Peptides/metabolism , Young Adult
7.
J Immunol ; 197(12): 4807-4816, 2016 12 15.
Article in English | MEDLINE | ID: mdl-27821669

ABSTRACT

HLA class I cell surface expression is crucial for normal immune responses, and variability in HLA expression may influence the course of infections. We have previously shown that classical HLA class I expression on many human cell types is biased with greatly reduced expression of HLA-B compared with HLA-A in the absence of inflammatory signals. In the search for the mechanisms responsible for this discrepancy, we have recently reported that the regulation is mainly posttranslational and that the C-terminal part of the α2 domain and the α3 domain contain the molecular determinants that explain most of the variability of expression between common HLA-A and -B allomorphs. In this study, we present a fine mapping of the structural determinants that allow such variability by exchanging key amino acids located within the C-terminal part of the α2 domain and the α3 domain of HLA-A2 and -B8, including Glu/Asp at position 177, Gln/Glu at position 180, Gly/Arg at position 239, and Pro/Ser at position 280. We found that the HLA-A2 and -B8 expression profiles could be interconverted to a large extent by mutual exchange of Gln/Glu at position 180 or by Gly/Arg at position 239. The presence of Gln180 and Gly239, as in HLA-A2, led to higher cell surface expression levels when compared with the presence of Glu180 and Arg239, as in HLA-B8. This indicates that the amino acids at positions 180 and 239 determine the level of cell surface expression of common HLA-A and -B allomorphs, probably by affecting HLA processing in the Ag presentation pathway.


Subject(s)
Arginine/metabolism , Glutamic Acid/metabolism , HLA-A2 Antigen/metabolism , HLA-B8 Antigen/metabolism , Infections/immunology , Antigen Presentation , Arginine/genetics , Cell Separation , Flow Cytometry , Glutamic Acid/genetics , Glycine/genetics , Glycine/metabolism , HEK293 Cells , HLA-A2 Antigen/genetics , HLA-B8 Antigen/genetics , Humans , Protein Domains/genetics , Protein Engineering , Protein Processing, Post-Translational , Protein Structure, Tertiary
8.
J Immunol ; 193(11): 5402-13, 2014 Dec 01.
Article in English | MEDLINE | ID: mdl-25355921

ABSTRACT

Mutations in T cell epitopes are implicated in hepatitis C virus (HCV) persistence and can impinge on vaccine development. We recently demonstrated a narrow bias in the human TCR repertoire targeted at an immunodominant, but highly mutable, HLA-B*0801-restricted epitope ((1395)HSKKKCDEL(1403) [HSK]). To investigate if the narrow TCR repertoire facilitates CTL escape, structural and biophysical studies were undertaken, alongside comprehensive functional analysis of T cells targeted at the natural variants of HLA-B*0801-HSK in different HCV genotypes and quasispecies. Interestingly, within the TCR-HLA-B*0801-HSK complex, the TCR contacts all available surface-exposed residues of the HSK determinant. This broad epitope coverage facilitates cross-genotypic reactivity and recognition of common mutations reported in HCV quasispecies, albeit to a varying degree. Certain mutations did abrogate T cell reactivity; however, natural variants comprising these mutations are reportedly rare and transient in nature, presumably due to fitness costs. Overall, despite a narrow bias, the TCR accommodated frequent mutations by acting like a blanket over the hypervariable epitope, thereby providing effective viral immunity. Our findings simultaneously advance the understanding of anti-HCV immunity and indicate the potential for cross-genotype HCV vaccines.


Subject(s)
Antigenic Variation , CD8-Positive T-Lymphocytes/immunology , Hepacivirus/immunology , Hepatitis C/immunology , Receptors, Antigen, T-Cell/metabolism , Antigenic Variation/genetics , CD8-Positive T-Lymphocytes/virology , Cells, Cultured , Crystallography, X-Ray , Cytotoxicity, Immunologic/genetics , Epitopes, T-Lymphocyte/genetics , Epitopes, T-Lymphocyte/metabolism , HLA-B8 Antigen/metabolism , Humans , Immunodominant Epitopes/genetics , Immunodominant Epitopes/metabolism , Mutation/genetics , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Binding/genetics , Protein Conformation , Protein Engineering , Protein Stability , Structure-Activity Relationship , Viral Nonstructural Proteins/genetics , Viral Nonstructural Proteins/metabolism
9.
PLoS Comput Biol ; 10(8): e1003748, 2014 Aug.
Article in English | MEDLINE | ID: mdl-25101830

ABSTRACT

The interplay between T cell receptors (TCRs) and peptides bound by major histocompatibility complexes (MHCs) is one of the most important interactions in the adaptive immune system. Several previous studies have computationally investigated their structural dynamics. On the basis of these simulations several structural and dynamical properties have been proposed as effectors of the immunogenicity. Here we present the results of a large scale Molecular Dynamics simulation study consisting of 100 ns simulations of 172 different complexes. These complexes consisted of all possible point mutations of the Epstein Barr Virus peptide FLRGRAYGL bound by HLA-B*08:01 and presented to the LC13 TCR. We compare the results of these 172 structural simulations with experimental immunogenicity data. We found that simulations with more immunogenic peptides and those with less immunogenic peptides are in fact highly similar and on average only minor differences in the hydrogen binding footprints, interface distances, and the relative orientation between the TCR chains are present. Thus our large scale data analysis shows that many previously suggested dynamical and structural properties of the TCR/peptide/MHC interface are unlikely to be conserved causal factors for peptide immunogenicity.


Subject(s)
HLA-B8 Antigen/chemistry , Molecular Dynamics Simulation , Peptides/chemistry , Receptors, Antigen, T-Cell/chemistry , Computational Biology , HLA-B8 Antigen/metabolism , Humans , Peptides/metabolism , Protein Binding , Receptors, Antigen, T-Cell/metabolism
10.
AIDS ; 26(18): 2337-44, 2012 Nov 28.
Article in English | MEDLINE | ID: mdl-23032422

ABSTRACT

OBJECTIVES: To examine the relationship between human leukocyte antigen (HLA) genotype and body composition changes induced by thymidine analogue nucleoside reverse transcriptase inhibitor (NtRTI) use in HIV-positive individuals. DESIGN: Data collected during the Simplification with Tenofovir-Emtricitabine (TDF-FTC) or Abacavir-Lamivudine (ABC-3TC) (STEAL) study were analysed to examine the potential association of HLA genotypes with changes in body composition in treatment-experienced HIV-positive individuals. METHODS: Demographic, HIV-related, body composition and HLA genotyping data from the STEAL study were used in this analysis. The mean percentage peripheral fat at study baseline was compared in participants with and without prior NtRTI use. Analyses were also carried out for each HLA supertype strata, for five HLA genes, within the thymidine-exposed group. These comparisons were made using Mann-Whitney rank-sum tests. RESULTS: Participants with prior NtRTI use had a significantly lower baseline mean peripheral fat percentage compared to those without NtRTI use (31.9 vs. 34.7%; P = 0.0045). However, participants carrying one or more of the three particular HLA supertype alleles, A01, B08 and DQ2, showed no significant difference in mean peripheral fat percentage at baseline by NtRTI use. Among participants with prior NtRTI exposure, there were significant differences in mean peripheral fat by HLA A01, B08 and DQ2 allele expression compared to those without expression of these alleles (A01: 34.91% vs. no A01: 30.3%; P = 0.0087; B08: 36.2% vs. no B08: 31.1%; P = 0.0317; DQ2: 35.16% vs. no DQ2: 30.06%; P = 0.0081). CONCLUSION: This analysis suggests that HIV-infected individuals carrying HLA A01, B08 or DQ2 supertype alleles may be resistant to NtRTI-induced peripheral fat loss.


Subject(s)
Anti-HIV Agents/pharmacology , Body Fat Distribution , HIV Infections/metabolism , HIV-Associated Lipodystrophy Syndrome/metabolism , HLA Antigens/metabolism , Thymidine/metabolism , Adenine/analogs & derivatives , Adenine/pharmacology , Australia , Biomarkers/metabolism , Blood Glucose , CD4 Lymphocyte Count , Deoxycytidine/analogs & derivatives , Deoxycytidine/pharmacology , Dideoxynucleosides/pharmacology , Drug Combinations , Drug Resistance, Viral , Emtricitabine , Female , Genotype , HIV Infections/drug therapy , HIV Infections/genetics , HIV-Associated Lipodystrophy Syndrome/drug therapy , HIV-Associated Lipodystrophy Syndrome/genetics , HLA Antigens/drug effects , HLA-A1 Antigen/metabolism , HLA-B8 Antigen/metabolism , HLA-DQ Antigens/metabolism , Humans , Lamivudine/pharmacology , Linkage Disequilibrium , Male , Middle Aged , Multicenter Studies as Topic , Organophosphonates/pharmacology , Predictive Value of Tests , Randomized Controlled Trials as Topic , Tenofovir , Thymidine/analogs & derivatives
11.
PLoS Pathog ; 7(5): e1001341, 2011 May.
Article in English | MEDLINE | ID: mdl-21589893

ABSTRACT

A major challenge to developing a successful HIV vaccine is the vast diversity of viral sequences, yet it is generally assumed that an epitope conserved between different strains will be recognised by responding T-cells. We examined whether an invariant HLA-B8 restricted Nef90₋97 epitope FL8 shared between five high titre viruses and eight recombinant vaccinia viruses expressing Nef from different viral isolates (clades A-H) could activate antiviral activity in FL8-specific cytotoxic T-lymphocytes (CTL). Surprisingly, despite epitope conservation, we found that CTL antiviral efficacy is dependent on the infecting viral isolate. Only 23% of Nef proteins, expressed by HIV-1 isolates or as recombinant vaccinia-Nef, were optimally recognised by CTL. Recognition of the HIV-1 isolates by CTL was independent of clade-grouping but correlated with virus-specific polymorphisms in the epitope flanking region, which altered immunoproteasomal cleavage resulting in enhanced or impaired epitope generation. The finding that the majority of virus isolates failed to present this conserved epitope highlights the importance of viral variance in CTL epitope flanking regions on the efficiency of antigen processing, which has been considerably underestimated previously. This has important implications for future vaccine design strategies since efficient presentation of conserved viral epitopes is necessary to promote enhanced anti-viral immune responses.


Subject(s)
Epitopes, T-Lymphocyte/genetics , HIV-1/immunology , Proteasome Endopeptidase Complex/physiology , T-Lymphocytes, Cytotoxic/immunology , nef Gene Products, Human Immunodeficiency Virus/immunology , AIDS Vaccines/standards , Amino Acid Sequence , Antigen Presentation/genetics , Conserved Sequence , DNA, Viral/chemistry , DNA, Viral/genetics , Enzyme-Linked Immunospot Assay , Epitopes, T-Lymphocyte/physiology , HIV Antigens/metabolism , HIV Infections/immunology , HIV Infections/prevention & control , HIV Infections/virology , HIV-1/genetics , HIV-1/metabolism , HLA-B8 Antigen/metabolism , Humans , Interferon-gamma/metabolism , Molecular Sequence Data , Mutation , Polymorphism, Genetic , Proteasome Endopeptidase Complex/immunology , Sequence Analysis, DNA , T-Lymphocytes, Cytotoxic/virology , Vaccinia virus/genetics , nef Gene Products, Human Immunodeficiency Virus/genetics , nef Gene Products, Human Immunodeficiency Virus/metabolism
12.
J Autoimmun ; 35(4): 309-15, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20685079

ABSTRACT

In autoimmune adrenal deficiency, autoantibodies target the 21-hydroxylase (21OH) protein. However, it is presumed that autoreactive T cells, rather than antibodies, are the main effectors of adrenal gland destruction, but their identification is still lacking. We performed a T-cell epitope mapping study using 49 overlapping 20mer peptides covering the 21OH sequence in patients with isolated Addison's disease, Autoimmune Polyendocrine Syndrome 1 and 2. IFNγ ELISPOT responses against these peptides were stronger, broader and more prevalent among patients than in controls, whatever the disease presentation. Five peptides elicited T-cell responses in patients only (68% sensitivity, 100% specificity). Blocking experiments identified IFNγ-producing cells as CD8 T lymphocytes, with two peptides frequently recognized in HLA-B8+ patients and a third one targeted in HLA-B35+ subjects. In particular, the 21OH(431-450) peptide was highly immunodominant, as it was recognized in more than 30% of patients, all carrying the HLA-B8 restriction element. This 21OH(431-450) region contained an EPLARLEL octamer (21OH(431-438)) predicted to bind to HLA-B8 with high affinity. Indeed, circulating EPLARLEL-specific CD8 T cells were detected at significant frequencies in HLA-B8+ patients but not in controls by HLA tetramer staining. This report enlightens disease-specific T-cell biomarkers and epitopes targeted in autoimmune adrenal deficiency.


Subject(s)
Addison Disease/immunology , CD8-Positive T-Lymphocytes/metabolism , Epitopes, T-Lymphocyte/immunology , Peptide Fragments/immunology , Steroid 21-Hydroxylase/immunology , Addison Disease/diagnosis , Addison Disease/pathology , Addison Disease/physiopathology , Adolescent , Adult , Autoantibodies/blood , CD8-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/pathology , Cells, Cultured , Child , Enzyme-Linked Immunospot Assay , Epitope Mapping , Epitopes, T-Lymphocyte/chemistry , Female , HLA-B8 Antigen/immunology , HLA-B8 Antigen/metabolism , Humans , Interferon-gamma/metabolism , Male , Middle Aged , Peptide Fragments/chemistry , Polyendocrinopathies, Autoimmune/diagnosis , Polyendocrinopathies, Autoimmune/immunology , Polyendocrinopathies, Autoimmune/pathology , Polyendocrinopathies, Autoimmune/physiopathology , Steroid 21-Hydroxylase/chemistry
13.
Immunogenetics ; 61(1): 43-54, 2009 Jan.
Article in English | MEDLINE | ID: mdl-18958466

ABSTRACT

Several endoplasmic reticulum proteins, including tapasin, play an important role in major histocompatibility complex (MHC) class I assembly. In this study, we assessed the influence of the tapasin cytoplasmic tail on three mouse MHC class I allotypes (H2-K(b), -K(d), and -L(d)) and demonstrated that the expression of truncated mouse tapasin in mouse cells resulted in very low K(b), K(d), and L(d) surface expression. The surface expression of K(d) also could not be rescued by human soluble tapasin, suggesting that the surface expression phenotype of the mouse MHC class I molecules in the presence of soluble tapasin was not due to mouse/human differences in tapasin. Notably, soluble mouse tapasin was able to partially rescue HLA-B8 surface expression on human 721.220 cells. Thus, the cytoplasmic tail of tapasin (either mouse or human) has a stronger impact on the surface expression of murine MHC class I molecules on mouse cells than on the expression of HLA-B8 on human cells. A K408W mutation in the mouse tapasin transmembrane/cytoplasmic domain disrupted K(d) folding and release from tapasin, but not interaction with transporter associated with antigen processing (TAP), indicating that the mechanism whereby the tapasin transmembrane/cytoplasmic domain facilitates MHC class I assembly is not limited to TAP stabilization. Our findings indicate that the C terminus of mouse tapasin plays a vital role in enabling murine MHC class I molecules to be expressed at the surface of mouse cells.


Subject(s)
H-2 Antigens/metabolism , Membrane Transport Proteins/physiology , ATP-Binding Cassette Transporters/physiology , Amino Acid Substitution , Animals , Antigen Presentation , Antigens, Surface/metabolism , Cell Line , HLA-B8 Antigen/metabolism , Histocompatibility Antigen H-2D , Humans , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/deficiency , Membrane Transport Proteins/genetics , Mice , Mice, Knockout , Mutation, Missense , Point Mutation , Protein Folding , Protein Interaction Mapping , Protein Structure, Tertiary/genetics , Protein Transport , Recombinant Fusion Proteins/metabolism , Solubility , Species Specificity
14.
J Immunol ; 174(9): 5593-601, 2005 May 01.
Article in English | MEDLINE | ID: mdl-15843558

ABSTRACT

Alloreactive T lymphocytes are central mediators of graft-versus-host disease and allograft rejection. A public CTL clonotype with specificity for the alloantigens HLA-B*4402 and B*4405 is often expanded to large numbers in healthy HLA-B*0801(+) individuals, driven by cross-reactive stimulation with the common, persistent herpesvirus EBV. Since such alloreactive memory CTL expansions have the potential to influence transplantation outcome, altered peptide ligands (APLs) of the target HLA-B*0801-binding EBV peptide, FLRGRAYGL, were screened as specific antagonists for this immunodominant clonotype. One APL, FLRGRFYGL, exerted powerful antagonism of a prototypic T cell clone expressing this immunodominant TCR when costimulated with target cells presenting HLA-B*0801(FLRGRAYGL). Significantly, this APL also reduced the lysis of allogeneic target cells expressing HLA-B*4402 by up to 99%. The affinities of the agonist and antagonist complexes for the public TCR, measured using solution and solid-phase assays, were 8 and 138 muM, respectively. Surprisingly, the half-life of the agonist and antagonist complexes was similar, yet the association rate for the antagonist complex was significantly slower. These observations were further supported by structural studies that suggested a large conformational hurdle was required to ligate the immunodominant TCR to the HLA-B*0801 antagonist complex. By defining an antagonist APL against an immunodominant alloreactive TCR, these findings raise the prospect of exploiting such peptides to inhibit clinical alloreactivity, particularly against clonal T cell expansions that react with alloantigens.


Subject(s)
Antigens, Viral/immunology , Cytotoxicity, Immunologic/immunology , Graft Rejection/immunology , Herpesvirus 4, Human/immunology , Isoantigens/immunology , Peptide Fragments/immunology , Receptors, Antigen, T-Cell/antagonists & inhibitors , T-Lymphocytes, Cytotoxic/immunology , Antigens, Viral/metabolism , Cell Line, Transformed , Clone Cells , Cross-Priming/immunology , Cytotoxicity Tests, Immunologic/methods , Epitopes, T-Lymphocyte/immunology , Epitopes, T-Lymphocyte/metabolism , Graft Rejection/virology , HLA-B Antigens/immunology , HLA-B Antigens/metabolism , HLA-B44 Antigen , HLA-B8 Antigen/chemistry , HLA-B8 Antigen/immunology , HLA-B8 Antigen/metabolism , Half-Life , Humans , Immunodominant Epitopes/immunology , Immunodominant Epitopes/metabolism , Peptide Fragments/chemical synthesis , Peptide Fragments/metabolism , Protein Binding/immunology , Receptors, Antigen, T-Cell/immunology , Receptors, Antigen, T-Cell/metabolism , T-Lymphocytes, Cytotoxic/virology
15.
J Immunol ; 174(2): 962-9, 2005 Jan 15.
Article in English | MEDLINE | ID: mdl-15634919

ABSTRACT

Tapasin influences the quantity and quality of MHC/peptide complexes at the cell surface; however, little is understood about the structural features that underlie its effects. Because tapasin, MHC class I, and TAP are transmembrane proteins, the tapasin transmembrane/cytoplasmic region has the potential to affect interactions at the endoplasmic reticulum membrane. In this study, we have assessed the influence of a conserved lysine at position 408, which lies in the tapasin transmembrane/cytoplasmic domain. We found that substitutions at position K408 in tapasin affected the expression of MHC class I molecules at the cell surface, and down-regulated tapasin stabilization of TAP. In addition to affecting TAP interaction with tapasin, the substitution of alanine, but not tryptophan, for the lysine at tapasin position 408 increased the amount of tapasin found in association with the open, peptide-free form of the HLA-B8 H chain. Tapasin K408A was also associated with more folded, beta(2)-microglobulin-assembled HLA-B8 molecules than wild-type tapasin. Consistent with our observation of a large pool of tapasin K408A-associated HLA-B8 molecules, the rate at which HLA-B8 migrated from the endoplasmic reticulum was slower in tapasin K408A-expressing cells than in wild-type tapasin-expressing cells. Thus, the alanine substitution at position 408 in tapasin may interfere with the stable acquisition by MHC class I molecules of peptides that are sufficiently optimal to allow MHC class I release from tapasin.


Subject(s)
Antiporters/chemistry , Cytoplasm/chemistry , HLA Antigens/metabolism , Histocompatibility Antigens Class I/metabolism , Immunoglobulins/chemistry , Lysine/chemistry , Protein Processing, Post-Translational , ATP Binding Cassette Transporter, Subfamily B, Member 2 , ATP Binding Cassette Transporter, Subfamily B, Member 3 , ATP-Binding Cassette Transporters/metabolism , Alanine/genetics , Amino Acid Sequence , Amino Acid Substitution/genetics , Animals , Antiporters/biosynthesis , Antiporters/genetics , Antiporters/metabolism , Cell Line, Transformed , Cell Membrane/chemistry , Cell Membrane/genetics , Cell Membrane/metabolism , Cytoplasm/genetics , Endoplasmic Reticulum/metabolism , HLA Antigens/chemistry , HLA-B8 Antigen/metabolism , Heat-Shock Proteins/metabolism , Histocompatibility Antigens Class I/biosynthesis , Histocompatibility Antigens Class I/chemistry , Humans , Immunoglobulins/biosynthesis , Immunoglobulins/genetics , Immunoglobulins/metabolism , Isomerases/metabolism , Lysine/genetics , Membrane Transport Proteins , Mice , Molecular Sequence Data , Protein Disulfide-Isomerases , Protein Folding , Protein Transport , Tryptophan/genetics , Up-Regulation/genetics
16.
Eur J Immunol ; 35(1): 150-8, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15593302

ABSTRACT

HLA-B57 has been shown to be associated with long-term asymptomatic HIV-1 infection. To investigate the biological mechanism by which the HLA-B57 allele could protect from HIV-1 disease, we studied both the number of CD8(+) T cells as well as CD8(+) T cell responsiveness directed to different HIV-1 Gag peptides presented by HLA-A2, -B8 or -B57. T cells specific for the HLA-B57 peptide KAFSPEVIPMF responded more readily and to a higher extend to antigenic stimulation in vitro than T cells specific for the HLA-A2 peptide SLYNTVATL or the HLA-B8 peptide EIYKRWII. This phenomenon was reproducible with T cells from individuals expressing HLA-B57 in combination with one or both of the other alleles and was persistent during long-term follow-up. Lower reactivity of A2- and B8-restricted T cells was not explained by mutations in the B8- or A2-restricted Gag-peptides. Moreover, no correlation between peptide mutation frequency and IFN-gamma production by the corresponding Gag-specific T cells was observed. In conclusion, functional differences were observed between T cells specific for HIV epitopes derived from the same protein presented by different HLA molecules. B57-restricted KAFSPEVIPMF-specific CD8(+) T cells have relatively high responsiveness, which could contribute to the protective effect of HLA-B57 in HIV infection.


Subject(s)
CD8-Positive T-Lymphocytes/immunology , Gene Products, gag , HIV Antigens , HIV Infections/immunology , HLA-B Antigens/metabolism , Amino Acid Sequence , Base Sequence , DNA, Viral/genetics , Epitopes/genetics , Gene Products, gag/genetics , Granzymes , HIV Antigens/genetics , HIV-1/genetics , HIV-1/immunology , HLA-A2 Antigen/metabolism , HLA-B8 Antigen/metabolism , Humans , In Vitro Techniques , Interferon-gamma/biosynthesis , Membrane Glycoproteins/metabolism , Mutation , Perforin , Pore Forming Cytotoxic Proteins , Serine Endopeptidases/metabolism , Tumor Necrosis Factor Receptor Superfamily, Member 7/metabolism
17.
Int J Cancer ; 114(5): 766-78, 2005 May 01.
Article in English | MEDLINE | ID: mdl-15609316

ABSTRACT

Several major histocompatibility complex (MHC) alleles have been reported to present peptides derived from the HPV16 E7 oncoprotein to T cells. We describe an overrepresentation of the HLA-B8 allele (28.44%) in cervical cancer patients as compared to the MHC class I allele frequency in a local healthy control population (18.80%) and the identification of an HLA-B8-binding peptide TLHEYMLDL (HPV16 E7(7-15)), which is able to drive HPV16 E7-specific and MHC class I-restricted T-cell responses in peripheral blood lymphocytes from healthy individuals. TLHEYMLDL-specific T cells recognize the naturally processed and presented peptide on HPV16+ cervical cancer cells transfected with the HLA-B8 gene defined by IFN-gamma production. This peptide epitope is also recognized by freshly harvested tumor-infiltrating T cells or T cells from tumor-draining lymph nodes from patients with cervical cancer determined by flow cytometry as well as by tetramer in situ staining. HLA-B8-restricted HPV E7(7-15)-specific T cells reside predominantly in the CD8+ CD45RA+ CCR7+ precursor or in the differentiated CD8+ CD45RA+ CCR7- T-cell population.


Subject(s)
HLA-B8 Antigen/metabolism , Oncogene Proteins, Viral/metabolism , T-Lymphocytes/immunology , Uterine Cervical Neoplasms/immunology , Alleles , Antigen Presentation , CD8 Antigens/biosynthesis , Epitopes/chemistry , Female , Flow Cytometry , Genes, MHC Class I , Humans , Leukocyte Common Antigens/biosynthesis , Lymph Nodes/metabolism , Lymphatic Metastasis , Lymphocytes/metabolism , Microscopy, Fluorescence , Papillomavirus E7 Proteins , Peptides/chemistry , Receptors, CCR7 , Receptors, Chemokine/biosynthesis , T-Lymphocytes/metabolism , Time Factors , Uterine Cervical Neoplasms/metabolism
18.
J Immunol ; 171(10): 5287-95, 2003 Nov 15.
Article in English | MEDLINE | ID: mdl-14607930

ABSTRACT

Tapasin has been proposed to function as a peptide editor to displace lower affinity peptides and/or to favor the binding of high affinity peptides. Consistent with this, cell surface HLA-B8 molecules in tapasin-deficient cells were less stable and the peptide repertoire was substantially altered. However, the binding affinities of peptides expressed in the absence of tapasin were unexpectedly higher, not lower. The peptide repertoire from cells expressing soluble tapasin was similar in both appearance and affinity to that presented in the presence of full-length tapasin, but the HLA-B8 molecules showed altered cell surface stability characteristics. Similarly, the binding affinities of HLA-A*0201-associated peptides from tapasin(+) and tapasin(-) cells were equivalent, although steady state HLA-A*0201 cell surface expression was decreased and the molecules demonstrated reduced cell surface stability on tapasin(-) cells. These data are inconsistent with a role for tapasin as a peptide editor. Instead, we propose that tapasin acts as a peptide facilitator. In this role, it stabilizes the peptide-free conformation of class I MHC molecules in the endoplasmic reticulum and thus increases the number and variety of peptides bound to class I MHC. Full-length tapasin then confers additional stability on class I MHC molecules that are already associated with peptides.


Subject(s)
Antiporters/physiology , HLA-B8 Antigen/metabolism , Immunoglobulins/physiology , Peptide Fragments/metabolism , RNA Editing/immunology , Antigen Presentation/genetics , Antigen Presentation/immunology , Antiporters/deficiency , Antiporters/genetics , Cell Line , Cell Membrane/immunology , Cell Membrane/metabolism , Gene Expression Regulation/immunology , HLA-A Antigens/metabolism , HLA-A2 Antigen , HLA-B8 Antigen/biosynthesis , Humans , Immunoglobulins/deficiency , Immunoglobulins/genetics , Membrane Transport Proteins , Protein Binding/genetics , Protein Binding/immunology , RNA Editing/genetics , RNA Stability/immunology , Up-Regulation/genetics , Up-Regulation/immunology
20.
Acta Microbiol Immunol Hung ; 49(1): 99-104, 2002.
Article in English | MEDLINE | ID: mdl-12073830

ABSTRACT

We examined the blastogenic response to phytohaemaglutinin (PHA) in HLA-B8, DR3 positive and negative subjects in the presence or absence of the immunosuppressive Fusarium mycotoxin. HLA-B8, DR3 haplotype was associated with a depression of the response to mitogen in the absence of the mycotoxin, whereas in the presence of deoxynivalenol we could not detect significant differences among individuals either possessing or lacking this haplotype.


Subject(s)
Fusarium/metabolism , HLA Antigens/metabolism , Immunosuppression Therapy , Lymphocyte Activation/drug effects , Mycotoxins/pharmacology , Trichothecenes/pharmacology , HLA Antigens/genetics , HLA-B8 Antigen/genetics , HLA-B8 Antigen/metabolism , HLA-DR3 Antigen/genetics , HLA-DR3 Antigen/metabolism , Humans , Phytohemagglutinins/pharmacology , T-Lymphocytes/immunology
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