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1.
Proc Natl Acad Sci U S A ; 121(24): e2400145121, 2024 Jun 11.
Article in English | MEDLINE | ID: mdl-38833465

ABSTRACT

Microalgae are promising production platforms for the cost-effective production of recombinant proteins. We have recently established that the red alga Porphyridium purpureum provides superior transgene expression properties, due to the episomal maintenance of transformation vectors as multicopy plasmids in the nucleus. Here, we have explored the potential of Porphyridium to synthesize complex pharmaceutical proteins to high levels. Testing expression constructs for a candidate subunit vaccine against the hepatitis C virus (HCV), we show that the soluble HCV E2 glycoprotein can be produced in transgenic algal cultures to high levels. The antigen undergoes faithful posttranslational modification by N-glycosylation and is recognized by conformationally selective antibodies, suggesting that it adopts a proper antigenic conformation in the endoplasmic reticulum of red algal cells. We also report the experimental determination of the structure of the N-glycan moiety that is attached to glycosylated proteins in Porphyridium. Finally, we demonstrate the immunogenicity of the HCV antigen produced in red algae when administered by injection as pure protein or by feeding of algal biomass.


Subject(s)
Hepacivirus , Porphyridium , Porphyridium/metabolism , Porphyridium/immunology , Porphyridium/genetics , Hepacivirus/immunology , Hepacivirus/genetics , Glycosylation , Viral Envelope Proteins/immunology , Viral Envelope Proteins/genetics , Viral Envelope Proteins/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , Animals
2.
PLoS One ; 19(5): e0299424, 2024.
Article in English | MEDLINE | ID: mdl-38781172

ABSTRACT

Mutations in the non-structural protein regions of hepatitis C virus (HCV) are a cause of a non-sustained virological response (SVR) to treatment with direct-acting antivirals (DAAs) for chronic hepatitis; however, there are non-SVR cases without these mutations. In this study, we examined immune cell profiles in peripheral blood before and after ombitasvir/paritaprevir/ritonavir treatment and screened for genes that could be used to predict the therapeutic effects of DAAs. Fluorescence-activated cell sorting analysis indicated that the median frequencies of programmed cell death-1-positive (PD-1+) effector regulatory T cells (eTregs), PD-1+CD8+ T cells, and PD-1+Helper T cells were decreased significantly in SVR cases, but without significant changes in non-SVR cases. The frequency of PD-1+ naïve Tregs was significantly higher in the SVR group than in the non-SVR group before and after treatment. Similar results were found in patients treated with other DAAs (e.g., daclatasvir plus asunaprevir) and supported an immune response after HCV therapy. RNA-sequencing analysis indicated a significant increase in the expression of genes associated with the immune response in the SVR group, while genes related to intracellular and extracellular signal transduction were highly expressed in the non-SVR group. Therefore, we searched for genes associated with PD-1+ eTregs and CD8+ T cells that were significantly different between the SVR and non-SVR groups and found that T-box transcription factor 21 was associated with the non-SVR state. These results indicate that PD-1-related signaling pathways are associated with a non-SVR mechanism after DAAs treatment separate from mutation-related drug resistance.


Subject(s)
Antiviral Agents , CD8-Positive T-Lymphocytes , Carbamates , Hepacivirus , Hepatitis C, Chronic , Programmed Cell Death 1 Receptor , Sulfonamides , T-Lymphocytes, Regulatory , Humans , Antiviral Agents/therapeutic use , Male , Hepacivirus/drug effects , Hepacivirus/immunology , Hepacivirus/genetics , Female , Middle Aged , Carbamates/therapeutic use , CD8-Positive T-Lymphocytes/immunology , T-Lymphocytes, Regulatory/immunology , Sulfonamides/therapeutic use , Sulfonamides/pharmacology , Hepatitis C, Chronic/drug therapy , Hepatitis C, Chronic/immunology , Hepatitis C, Chronic/virology , Hepatitis C, Chronic/blood , Cyclopropanes/therapeutic use , Valine/analogs & derivatives , Proline/analogs & derivatives , Anilides/therapeutic use , Anilides/pharmacology , Lactams, Macrocyclic/therapeutic use , Macrocyclic Compounds/therapeutic use , Macrocyclic Compounds/pharmacology , Aged , Ritonavir/therapeutic use , Adult , Drug Therapy, Combination , T-Lymphocytes, Helper-Inducer/immunology , Imidazoles , Isoquinolines , Pyrrolidines
3.
Viruses ; 16(5)2024 05 18.
Article in English | MEDLINE | ID: mdl-38793684

ABSTRACT

Hepatitis C virus (HCV) is a major medical health burden and the leading cause of chronic liver disease and cancer worldwide. More than 58 million people are chronically infected with HCV, with 1.5 million new infections occurring each year. An effective HCV vaccine is a major public health and medical need as recognized by the World Health Organization. However, due to the high variability of the virus and its ability to escape the immune response, HCV rapidly accumulates mutations, making vaccine development a formidable challenge. An effective vaccine must elicit broadly neutralizing antibodies (bnAbs) in a consistent fashion. After decades of studies from basic research through clinical development, the antigen of choice is considered the E1E2 envelope glycoprotein due to conserved, broadly neutralizing antigenic domains located in the constituent subunits of E1, E2, and the E1E2 heterodimeric complex itself. The challenge has been elicitation of robust humoral and cellular responses leading to broad virus neutralization due to the relatively low immunogenicity of this antigen. In view of this challenge, structure-based vaccine design approaches to stabilize key antigenic domains have been hampered due to the lack of E1E2 atomic-level resolution structures to guide them. Another challenge has been the development of a delivery platform in which a multivalent form of the antigen can be presented in order to elicit a more robust anti-HCV immune response. Recent nanoparticle vaccines are gaining prominence in the field due to their ability to facilitate a controlled multivalent presentation and trafficking to lymph nodes, where they can interact with both the cellular and humoral components of the immune system. This review focuses on recent advances in understanding the E1E2 heterodimeric structure to facilitate a rational design approach and the potential for development of a multivalent nanoparticle-based HCV E1E2 vaccine. Both aspects are considered important in the development of an effective HCV vaccine that can effectively address viral diversity and escape.


Subject(s)
Hepacivirus , Hepatitis C , Vaccine Development , Viral Envelope Proteins , Viral Hepatitis Vaccines , Hepacivirus/immunology , Hepacivirus/genetics , Hepacivirus/chemistry , Humans , Viral Envelope Proteins/immunology , Viral Envelope Proteins/chemistry , Viral Envelope Proteins/genetics , Viral Hepatitis Vaccines/immunology , Hepatitis C/prevention & control , Hepatitis C/immunology , Hepatitis C/virology , Antibodies, Neutralizing/immunology , Animals , Hepatitis C Antibodies/immunology
4.
Front Cell Infect Microbiol ; 14: 1382029, 2024.
Article in English | MEDLINE | ID: mdl-38817443

ABSTRACT

Infections of hepatotropic viruses cause a wide array of liver diseases including acute hepatitis, chronic hepatitis and the consequently developed cirrhosis and hepatocellular carcinoma (HCC). Among the five classical hepatotropic viruses, hepatitis B virus (HBV) and hepatitis C virus (HCV) usually infect human persistently and cause chronic hepatitis, leading to major troubles to humanity. Previous studies have revealed that several types of inflammasomes are involved in the infections of HBV and HCV. Here, we summarize the current knowledge about their roles in hepatitis B and C. NLRP3 inflammasome can be activated and regulated by HBV and HCV. It is found to exert antiviral function or mediates inflammatory response in viral infections depending on different experimental models. Besides NLRP3 inflammasome, IFI16 and AIM2 inflammasomes participate in the pathological process of hepatitis B, and NALP3 inflammasome may sense HCV infection in hepatocytes. The inflammasomes affect the pathological process of viral hepatitis through its downstream secretion of inflammatory cytokines interleukin-1ß (IL-1ß) and IL-18 or induction of pyroptosis resulting from cleaved gasdermin D (GSDMD). However, the roles of inflammasomes in different stages of viral infection remains mainly unclear. More proper experimental models of viral hepatitis should be developed for specific studies in future, so that we can understand more about the complexity of inflammasome regulation and multifunction of inflammasomes and their downstream effectors during HBV and HCV infections.


Subject(s)
Hepacivirus , Hepatitis B virus , Hepatitis B, Chronic , Hepatitis C, Chronic , Inflammasomes , NLR Family, Pyrin Domain-Containing 3 Protein , Humans , Inflammasomes/metabolism , Inflammasomes/immunology , Hepatitis C, Chronic/immunology , NLR Family, Pyrin Domain-Containing 3 Protein/metabolism , Hepacivirus/immunology , Hepatitis B, Chronic/immunology , Hepatitis B, Chronic/metabolism , Hepatitis B virus/immunology , DNA-Binding Proteins/metabolism , Interleukin-1beta/metabolism , Pyroptosis , Animals , Phosphoproteins/metabolism , Nuclear Proteins/metabolism , Hepatocytes/virology , Hepatocytes/immunology , Interleukin-18/metabolism , Phosphate-Binding Proteins/metabolism , Gasdermins
5.
Arab J Gastroenterol ; 25(2): 223-229, 2024 May.
Article in English | MEDLINE | ID: mdl-38705815

ABSTRACT

BACKGROUND AND STUDY AIMS: The present study was undertaken to design a new machine learning (ML) model that can predict the presence of viremia in hepatitis C virus (HCV) antibody (anti-HCV) seropositive cases. PATIENTS AND METHODS: This retrospective study was conducted between January 2012-January 2022 with 812 patients who were referred for anti-HCV positivity and were examined for HCV ribonucleic acid (HCV RNA). Models were constructed with 11 features with a predictor (presence and absence of viremia) to predict HCV viremia. To build an optimal model, this current study also examined and compared the three classifier data mining approaches: RF, SVM and XGBoost. RESULTS: The highest performance was achieved with XGBoost (90%), which was followed by RF (89%), SVM Linear (85%) and SVM Radial (83%) algorithms, respectively. The four most important key features contributing to the models were: alanine aminotransferase (ALT), aspartate aminotransferase (AST), albumin (ALB) and anti-HCV levels, respectively, while "ALB" was replaced by the "AGE" only in the XGBoost model. CONCLUSION: This study has shown that XGBoost and RF based ML models, incorporating anti-HCV levels and routine laboratory tests (ALT, AST, ALB), and age are capable of providing HCV viremia diagnosis with 90% and 89% accuracy, respectively. These findings highlight the potential of ML models in the early diagnosis of HCV viremia, which may be helpful in optimizing HCV elimination programs.


Subject(s)
Alanine Transaminase , Aspartate Aminotransferases , Hepatitis C Antibodies , Hepatitis C , Machine Learning , RNA, Viral , Viremia , Humans , Viremia/diagnosis , Retrospective Studies , Hepatitis C Antibodies/blood , Female , Male , Alanine Transaminase/blood , Aspartate Aminotransferases/blood , RNA, Viral/blood , Middle Aged , Hepatitis C/diagnosis , Algorithms , Hepacivirus/immunology , Hepacivirus/genetics , Adult , Serum Albumin , Predictive Value of Tests
6.
Ann Biol Clin (Paris) ; 82(2): 215-224, 2024 06 05.
Article in French | MEDLINE | ID: mdl-38702909

ABSTRACT

The Westgard quality control (QC) rules are often applied in infectious diseases serology to validate the quality of results, but this requires a reasonable tradeoff between maximum sensitivity to errors and minimum false rejections. This article, in addition to illustrate the six sigma methodology in the QC management of the (anti-HCV Architect®) test, it discusses the main influencing factors on sigma value. Data from low positive and in-kit control materials spreading over 6 months and using four reagent kits, were used to calculate the precision of the test. The difference between the control material reactivity and the cut-off defined the error budget. Sigma values were > 6, which indicates that the method produces four erroneous results per million tests. The application of the six sigma concept made it possible to argue the choice of the new QC strategy (use of 13S rule with one positive control) and to relax the existing QC rules. This work provides a framework for infectious diseases serology laboratories to evaluate tests performances against a quality requirement and design an optimal QC strategy.


Subject(s)
Hepatitis C , Quality Control , Serologic Tests , Total Quality Management , Humans , Hepatitis C/blood , Hepatitis C/diagnosis , Total Quality Management/standards , Serologic Tests/standards , Serologic Tests/methods , Hepatitis C Antibodies/blood , Hepatitis C Antibodies/analysis , Hepacivirus/isolation & purification , Hepacivirus/immunology , Sensitivity and Specificity , Reagent Kits, Diagnostic/standards , Reproducibility of Results , Quality Assurance, Health Care/standards , Quality Assurance, Health Care/methods , Laboratories, Clinical/standards
7.
Sci Rep ; 14(1): 11275, 2024 05 17.
Article in English | MEDLINE | ID: mdl-38760415

ABSTRACT

Limited data exist on viral hepatitis among migrant populations. This study investigated the prevalence of current hepatitis B virus (HBV) infection and lifetime hepatitis C virus (HCV) infection among Qatar's migrant craft and manual workers (CMWs), constituting 60% of the country's population. Sera collected during a nationwide COVID-19 population-based cross-sectional survey on CMWs between July 26 and September 9, 2020, underwent testing for HBsAg and HCV antibodies. Reactive samples underwent confirmatory testing, and logistic regression analyses were employed to explore associations with HBV and HCV infections. Among 2528 specimens tested for HBV infection, 15 were reactive, with 8 subsequently confirmed positive. Three samples lacked sufficient sera for confirmatory testing but were included in the analysis through multiple imputations. Prevalence of current HBV infection was 0.4% (95% CI 0.2-0.7%). Educational attainment and occupation were significantly associated with current HBV infection. For HCV infection, out of 2607 specimens tested, 46 were reactive, and 23 were subsequently confirmed positive. Prevalence of lifetime HCV infection was 0.8% (95% CI 0.5-1.2%). Egyptians exhibited the highest prevalence at 6.5% (95% CI 3.1-13.1%), followed by Pakistanis at 3.1% (95% CI 1.1-8.0%). Nationality, geographic location, and occupation were significantly associated with lifetime HCV infection. HBV infection is relatively low among CMWs, while HCV infection falls within the intermediate range, both compared to global and regional levels.


Subject(s)
Hepatitis B , Hepatitis C , Transients and Migrants , Humans , Qatar/epidemiology , Hepatitis B/epidemiology , Hepatitis B/virology , Hepatitis B/blood , Female , Transients and Migrants/statistics & numerical data , Hepatitis C/epidemiology , Adult , Male , Prevalence , Cross-Sectional Studies , Middle Aged , Hepacivirus/immunology , Hepacivirus/isolation & purification , Hepatitis B virus/isolation & purification , Hepatitis B virus/immunology , Young Adult , COVID-19/epidemiology , COVID-19/virology , Adolescent , Hepatitis B Surface Antigens/blood , Hepatitis C Antibodies/blood
8.
World J Gastroenterol ; 30(14): 1949-1957, 2024 Apr 14.
Article in English | MEDLINE | ID: mdl-38681127

ABSTRACT

In Japan, liver biopsies were previously crucial in evaluating the severity of hepatitis caused by the hepatitis C virus (HCV) and diagnosing HCV-related hepatocellular carcinoma (HCC). However, due to the development of effective antiviral treatments and advanced imaging, the necessity for biopsies has significantly decreased. This change has resulted in fewer chances for diagnosing liver disease, causing many general pathologists to feel less confident in making liver biopsy diagnoses. This article provides a comprehensive overview of the challenges and potential solutions related to liver biopsies in Japan. First, it highlights the importance of considering steatotic liver diseases as independent conditions that can coexist with other liver diseases due to their increasing prevalence. Second, it emphasizes the need to avoid hasty assumptions of HCC in nodular lesions, because clinically diagnosable HCCs are not targets for biopsy. Third, the importance of diagnosing hepatic immune-related adverse events caused by immune checkpoint inhibitors is increasing due to the anticipated widespread use of these drugs. In conclusion, pathologists should be attuned to the changing landscape of liver diseases and approach liver biopsies with care and attention to detail.


Subject(s)
Antiviral Agents , Carcinoma, Hepatocellular , Hepacivirus , Liver Neoplasms , Liver , Humans , Japan/epidemiology , Biopsy , Liver/pathology , Liver/virology , Liver/diagnostic imaging , Liver Neoplasms/pathology , Liver Neoplasms/virology , Carcinoma, Hepatocellular/pathology , Carcinoma, Hepatocellular/virology , Antiviral Agents/therapeutic use , Hepacivirus/isolation & purification , Hepacivirus/immunology , Immune Checkpoint Inhibitors/therapeutic use , Immune Checkpoint Inhibitors/adverse effects , Hepatitis C/diagnosis , Hepatitis C/pathology , Hepatitis C/drug therapy , Hepatitis C, Chronic/pathology , Hepatitis C, Chronic/drug therapy , Hepatitis C, Chronic/complications , Hepatitis C, Chronic/diagnosis , Fatty Liver/pathology , Fatty Liver/virology , Fatty Liver/diagnosis
9.
Int J Biol Macromol ; 267(Pt 2): 131517, 2024 May.
Article in English | MEDLINE | ID: mdl-38621559

ABSTRACT

Infection with the hepatitis C virus (HCV) is one of the causes of liver cancer, which is the world's sixth most prevalent and third most lethal cancer. The current treatments do not prevent reinfection; because they are expensive, their usage is limited to developed nations. Therefore, a prophylactic vaccine is essential to control this virus. Hence, in this study, an immunoinformatics method was applied to design a multi-epitope vaccine against HCV. The best B- and T-cell epitopes from conserved regions of the E2 protein of seven HCV genotypes were joined with the appropriate linkers to design a multi-epitope vaccine. In addition, cholera enterotoxin subunit B (CtxB) was included as an adjuvant in the vaccine construct. This study is the first to present this epitopes-adjuvant combination. The vaccine had acceptable physicochemical characteristics. The vaccine's 3D structure was predicted and validated. The vaccine's binding stability with Toll-like receptor 2 (TLR2) and TLR4 was confirmed using molecular docking and molecular dynamics (MD) simulation. The immune simulation revealed the vaccine's efficacy by increasing the population of B and T cells in response to vaccination. In silico expression in Escherichia coli (E. coli) was also successful.


Subject(s)
Computational Biology , Epitopes, B-Lymphocyte , Epitopes, T-Lymphocyte , Hepacivirus , Hepatitis C , Molecular Docking Simulation , Molecular Dynamics Simulation , Hepacivirus/immunology , Epitopes, T-Lymphocyte/immunology , Epitopes, T-Lymphocyte/chemistry , Humans , Computational Biology/methods , Hepatitis C/prevention & control , Hepatitis C/immunology , Epitopes, B-Lymphocyte/immunology , Epitopes, B-Lymphocyte/chemistry , Toll-Like Receptor 4/immunology , Toll-Like Receptor 4/metabolism , Toll-Like Receptor 2/immunology , Toll-Like Receptor 2/chemistry , Viral Hepatitis Vaccines/immunology , Viral Hepatitis Vaccines/chemistry , Computer Simulation , Viral Envelope Proteins/immunology , Viral Envelope Proteins/chemistry , Immunoinformatics
10.
Arch Virol ; 169(5): 112, 2024 Apr 29.
Article in English | MEDLINE | ID: mdl-38683226

ABSTRACT

Previously, we reported a neutralizing monoclonal antibody, A8A11, raised against a novel conserved epitope within the hepatitis C virus (HCV) E2 protein, that could significantly reduce HCV replication. Here, we report the nucleotide sequence of A8A11 and demonstrate the efficacy of a single-chain variable fragment (scFv) protein that mimics the antibody, inhibits the binding of an HCV virus-like particle to hepatocytes, and reduces viral RNA replication in a cell culture system. More importantly, scFv A8A11 was found to effectively restrict the increase of viral RNA levels in the serum of HCV-infected chimeric mice harbouring human hepatocytes. These results suggest a promising approach to neutralizing-antibody-based therapeutic interventions against HCV infection.


Subject(s)
Epitopes , Hepacivirus , Hepatocytes , Single-Chain Antibodies , Viral Envelope Proteins , Virus Internalization , Hepacivirus/immunology , Hepacivirus/genetics , Hepacivirus/physiology , Single-Chain Antibodies/immunology , Single-Chain Antibodies/genetics , Hepatocytes/virology , Hepatocytes/immunology , Animals , Humans , Epitopes/immunology , Mice , Viral Envelope Proteins/immunology , Viral Envelope Proteins/genetics , Viral Envelope Proteins/metabolism , Hepatitis C/virology , Hepatitis C/immunology , Antibodies, Neutralizing/immunology , Virus Replication , Antibodies, Monoclonal/immunology
11.
Viruses ; 16(4)2024 04 01.
Article in English | MEDLINE | ID: mdl-38675895

ABSTRACT

Macrophages play multiple roles in innate immunity including phagocytosing pathogens, modulating the inflammatory response, presenting antigens, and recruiting other immune cells. Tissue-resident macrophages (TRMs) adapt to the local microenvironment and can exhibit different immune responses upon encountering distinct pathogens. In this study, we generated induced macrophages (iMACs) derived from human pluripotent stem cells (hPSCs) to investigate the interactions between the macrophages and various human pathogens, including the hepatitis C virus (HCV), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and Streptococcus pneumoniae. iMACs can engulf all three pathogens. A comparison of the RNA-seq data of the iMACs encountering these pathogens revealed that the pathogens activated distinct gene networks related to viral response and inflammation in iMACs. Interestingly, in the presence of both HCV and host cells, iMACs upregulated different sets of genes involved in immune cell migration and chemotaxis. Finally, we constructed an image-based high-content analysis system consisting of iMACs, recombinant GFP-HCV, and hepatic cells to evaluate the effect of a chemical inhibitor on HCV infection. In summary, we developed a human cell-based in vitro model to study the macrophage response to human viral and bacterial infections; the results of the transcriptome analysis indicated that the iMACs were a useful resource for modeling pathogen-macrophage-tissue microenvironment interactions.


Subject(s)
Hepacivirus , Macrophages , Pluripotent Stem Cells , SARS-CoV-2 , Humans , Macrophages/immunology , Macrophages/virology , Hepacivirus/immunology , Hepacivirus/physiology , SARS-CoV-2/immunology , Pluripotent Stem Cells/immunology , Streptococcus pneumoniae/immunology , COVID-19/immunology , COVID-19/virology , Hepatitis C/immunology , Hepatitis C/virology , Phagocytosis , Virus Diseases/immunology , Immunity, Innate
12.
J Viral Hepat ; 31(6): 320-323, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38483043

ABSTRACT

Hepatitis C core antigen (HCVcAg) is becoming increasingly recognized as an alternative to molecular testing for the confirmation of chronic hepatitis C. However, there are limited data on the performance of this assay in a genotype 3 (GT3) predominant country like Pakistan. We conducted a study to evaluate the diagnostic performance of HCVcAg against the HCV polymerase chain reaction (PCR) molecular test. HCV antibody-positive patients requiring confirmatory testing were recruited from August to October 2018 at the Pakistan Kidney and Liver Institute and Research Center (PKLI&RC), Lahore, Pakistan. Patients with previously known diagnoses or treatment histories were excluded. The Abbott HCV Ag assay was used for HCVcAg testing. Results ≥3.00 fmol/L were considered positive for HCVcAg. The Abbott RealTime HCV assay was used for PCR testing with a lower detection limit of ≥12 IU/mL. We computed the sensitivity, specificity and correlation of HCVcAg against HCV PCR. A total of 394 patients were recruited. The median age of the patients was 42 years. Most participants were females (51.5%, n = 203), 30.7% (n = 121) had HTN, 10.4% DM (n = 41) and 5% had APRI ≥2. The overall sensitivity was 98.0% and the specificity was 98.6%. The lowest detection limit of cAg was an HCV RNA value of 4657 IU/mL. The levels of cAg were highly correlated with those of HCV RNA by Spearman's rank correlation test (r = 0.935, p < .001). HCVcAg represents a suitable alternative with high sensitivity and specificity compared with HCV PCR in the GT3-predominant population and can be incorporated into algorithms to improve linkage to care.


Subject(s)
Genotype , Hepacivirus , Hepatitis C Antigens , Hepatitis C, Chronic , Polymerase Chain Reaction , Sensitivity and Specificity , Viral Core Proteins , Humans , Female , Male , Pakistan , Hepacivirus/genetics , Hepacivirus/immunology , Adult , Middle Aged , Hepatitis C, Chronic/diagnosis , Hepatitis C, Chronic/virology , Viral Core Proteins/genetics , Viral Core Proteins/immunology , Hepatitis C Antigens/blood , Polymerase Chain Reaction/methods , Young Adult , Aged , RNA, Viral
13.
J Virol ; 98(3): e0192123, 2024 Mar 19.
Article in English | MEDLINE | ID: mdl-38319104

ABSTRACT

Hepatitis C virus (HCV) infection progresses to chronicity in the majority of infected individuals. Its high intra-host genetic variability enables HCV to evade the continuous selection pressure exerted by the host, contributing to persistent infection. Utilizing a cell culture-adapted HCV population (p100pop) which exhibits increased replicative capacity in various liver cell lines, this study investigated virus and host determinants that underlie enhanced viral fitness. Characterization of a panel of molecular p100 clones revealed that cell culture adaptive mutations optimize a range of virus-host interactions, resulting in expanded cell tropism, altered dependence on the cellular co-factor micro-RNA 122 and increased rates of virus spread. On the host side, comparative transcriptional profiling of hepatoma cells infected either with p100pop or its progenitor virus revealed that enhanced replicative fitness correlated with activation of endoplasmic reticulum stress signaling and the unfolded protein response. In contrast, infection of primary human hepatocytes with p100pop led to a mild attenuation of virion production which correlated with a greater induction of cell-intrinsic antiviral defense responses. In summary, long-term passage experiments in cells where selective pressure from innate immunity is lacking improves multiple virus-host interactions, enhancing HCV replicative fitness. However, this study further indicates that HCV has evolved to replicate at low levels in primary human hepatocytes to minimize innate immune activation, highlighting that an optimal balance between replicative fitness and innate immune induction is key to establish persistence. IMPORTANCE: Hepatitis C virus (HCV) infection remains a global health burden with 58 million people currently chronically infected. However, the detailed molecular mechanisms that underly persistence are incompletely defined. We utilized a long-term cell culture-adapted HCV, exhibiting enhanced replicative fitness in different human liver cell lines, in order to identify molecular principles by which HCV optimizes its replication fitness. Our experimental data revealed that cell culture adaptive mutations confer changes in the host response and usage of various host factors. The latter allows functional flexibility at different stages of the viral replication cycle. However, increased replicative fitness resulted in an increased activation of the innate immune system, which likely poses boundary for functional variation in authentic hepatocytes, explaining the observed attenuation of the adapted virus population in primary hepatocytes.


Subject(s)
Genetic Fitness , Hepacivirus , Hepatocytes , Host Microbial Interactions , Immunity, Innate , Mutation , Humans , Cells, Cultured , Endoplasmic Reticulum Stress , Genetic Fitness/genetics , Genetic Fitness/immunology , Hepacivirus/genetics , Hepacivirus/growth & development , Hepacivirus/immunology , Hepacivirus/physiology , Hepatitis C/immunology , Hepatitis C/virology , Hepatocytes/immunology , Hepatocytes/virology , Host Microbial Interactions/immunology , MicroRNAs/metabolism , Serial Passage , Unfolded Protein Response , Viral Tropism , Virion/growth & development , Virion/metabolism , Virus Replication/genetics , Virus Replication/immunology
14.
J Subst Use Addict Treat ; 160: 209308, 2024 May.
Article in English | MEDLINE | ID: mdl-38301921

ABSTRACT

INTRODUCTION: As a public health crisis, hepatitis C viral infection (HCV) is highly prevalent among people who inject drugs (PWID). We aimed to assess factors associated with HCV antibody (Ab) and HCV ribonucleic acid (RNA) positivity among PWID in Puerto Rico. METHODS: The study recruited a total of 150 persons in rural and peri-urban community settings through the respondent-driven sampling method and administered a structured questionnaire. We conducted HIV and HCV testing using dried blood spots (DBS). We examined correlates of HCV infection with sociodemographics, drug use patterns, and injection practices using regression in bivariate and multivariable analysis. RESULTS: Of the 150 participants, 89 % were male; 11 % were female; 72 % identified as mixed race; and the median duration of drug injection was 17.8 years. The mean age was 43.1 years, with 64 % of the population being from 23 to 45 years old. Among study participants (n = 150), the prevalence of HCV Ab was 73 %, and HCV RNA was 53 %. Factors significantly associated with HCV Ab and RNA included older age, increasing years of injection, incarceration, injecting other people, and identifying as Black. The belief that syringe air blowing reduces HCV transmission was also independently associated with HCV Ab positivity. CONCLUSIONS: Our findings regarding risk factors associated with HCV infection show the need to enhance prevention and control strategies for reducing transmission among PWID. Direct-acting antiviral treatment, sustained access to harm reduction, and culturally tailored services will be required to substantially reduce rates of HCV. Community-based treatment models and treatment in correctional settings are needed.


Subject(s)
Hepatitis C Antibodies , Hepatitis C , RNA, Viral , Substance Abuse, Intravenous , Humans , Female , Male , Substance Abuse, Intravenous/epidemiology , Substance Abuse, Intravenous/complications , Puerto Rico/epidemiology , Adult , Risk Factors , Hepatitis C/epidemiology , Hepatitis C/transmission , Middle Aged , Hepatitis C Antibodies/blood , Prevalence , RNA, Viral/blood , Young Adult , Hepacivirus/immunology , Hepacivirus/genetics
15.
J Formos Med Assoc ; 123(5): 613-619, 2024 May.
Article in English | MEDLINE | ID: mdl-38195318

ABSTRACT

BACKGROUND: /Purpose: To achieve the World Health Organization goal of eliminating viral hepatitis by 2030, a key strategy in resource-limited areas is to identify the areas with high prevalence and to prioritize screening and treatment intervention. We hypothesized that a hospital-based laboratory database could be used to estimate the township- and village-specific anti-hepatitis C virus (HCV) prevalence. METHODS: Yunlin County Public Health Bureau has been collecting anti-HCV test data from eight major hospitals. Township- and village-specific screening testing rates and anti-HCV prevalence were calculated for residents 40 years or older. A township with a wide range of anti-HCV prevalence rates was selected for outreach universal screening and for validating the village-specific prevalence of anti-HCV in the analysis of the data from the hospitals. RESULTS: The overall anti-HCV screening testing rate in Yunlin County was 30.4 %, whereas the anti-HCV prevalence rate for persons 40 years or older was 15.4 %. The village-specific anti-HCV prevalence rates ranged from 3.8 % to 85.8 %. Community-based screening was conducted in Kouhu Township. The village-specific anti-HCV prevalence rates ranged from 0 % to 18.8 %. Three of the four villages had the highest village-specific anti-HCV prevalence in the community-based study and the hospital-based study. Additionally, 95.8 % of the new HCV cases detected by universal screening received anti-HCV therapy. CONCLUSION: The hospital-based database provided a framework for identifying the villages with high anti-HCV prevalence. Additionally, community-based universal screening should be prioritized for villages with high prevalence in hospital-based databases.


Subject(s)
Hepatitis C , Mass Screening , Humans , Hepatitis C/diagnosis , Hepatitis C/epidemiology , Hepatitis C/prevention & control , Prevalence , Adult , Middle Aged , Female , Aged , Male , Hepatitis C Antibodies/blood , Hospitals/statistics & numerical data , Hepacivirus/immunology , Rural Population/statistics & numerical data
16.
J Virol ; 97(10): e0109023, 2023 10 31.
Article in English | MEDLINE | ID: mdl-37787533

ABSTRACT

IMPORTANCE: Clinical data suggest that Hepatitis C virus (HCV) levels are generally lower in Hepatitis B virus (HBV) co-infected patients, but the mechanism is unknown. Here, we show that HBV, but not HCV, activated absent in melanoma-2. This in turn results in inflammasome-mediated cleavage of pro-IL-18, leading to an innate immune activation cascade that results in increased interferon-γ, suppressing both viruses.


Subject(s)
Coinfection , DNA-Binding Proteins , Hepacivirus , Hepatitis B virus , Hepatitis B , Hepatitis C , Immunity, Innate , Humans , Coinfection/immunology , Coinfection/virology , DNA-Binding Proteins/metabolism , Hepacivirus/immunology , Hepatitis B/complications , Hepatitis B/immunology , Hepatitis B/virology , Hepatitis B virus/immunology , Hepatitis B virus/physiology , Hepatitis C/complications , Hepatitis C/immunology , Hepatitis C/virology , Inflammasomes/metabolism , Interferon-gamma/immunology
17.
Nature ; 619(7971): 811-818, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37407817

ABSTRACT

RNA viruses have evolved elaborate strategies to protect their genomes, including 5' capping. However, until now no RNA 5' cap has been identified for hepatitis C virus1,2 (HCV), which causes chronic infection, liver cirrhosis and cancer3. Here we demonstrate that the cellular metabolite flavin adenine dinucleotide (FAD) is used as a non-canonical initiating nucleotide by the viral RNA-dependent RNA polymerase, resulting in a 5'-FAD cap on the HCV RNA. The HCV FAD-capping frequency is around 75%, which is the highest observed for any RNA metabolite cap across all kingdoms of life4-8. FAD capping is conserved among HCV isolates for the replication-intermediate negative strand and partially for the positive strand. It is also observed in vivo on HCV RNA isolated from patient samples and from the liver and serum of a human liver chimeric mouse model. Furthermore, we show that 5'-FAD capping protects RNA from RIG-I mediated innate immune recognition but does not stabilize the HCV RNA. These results establish capping with cellular metabolites as a novel viral RNA-capping strategy, which could be used by other viruses and affect anti-viral treatment outcomes and persistence of infection.


Subject(s)
Flavin-Adenine Dinucleotide , Hepacivirus , RNA Caps , RNA, Viral , Animals , Humans , Mice , Chimera/virology , Flavin-Adenine Dinucleotide/metabolism , Hepacivirus/genetics , Hepacivirus/immunology , Hepatitis C/virology , Innate Immunity Recognition , Liver/virology , RNA Stability , RNA, Viral/chemistry , RNA, Viral/genetics , RNA, Viral/immunology , RNA, Viral/metabolism , RNA-Dependent RNA Polymerase/metabolism , Virus Replication/genetics , RNA Caps/metabolism
18.
Science ; 380(6640): 37-38, 2023 04 07.
Article in English | MEDLINE | ID: mdl-37023205

ABSTRACT

Recent advances aid the development of vaccines to prevent chronic liver diseases.


Subject(s)
Hepacivirus , Hepatitis C, Chronic , Viral Hepatitis Vaccines , Humans , Hepacivirus/immunology , Viral Hepatitis Vaccines/therapeutic use , Hepatitis C, Chronic/prevention & control , Immune Evasion
19.
J Virol ; 97(4): e0181222, 2023 04 27.
Article in English | MEDLINE | ID: mdl-36971565

ABSTRACT

The lack of robust immunocompetent animal models for hepatitis C virus (HCV) impedes vaccine development and studies of immune responses. Norway rat hepacivirus (NrHV) infection in rats shares HCV-defining characteristics, including hepatotropism, chronicity, immune responses, and aspects of liver pathology. To exploit genetic variants and research tools, we previously adapted NrHV to prolonged infection in laboratory mice. Through intrahepatic RNA inoculation of molecular clones of the identified variants, we here characterized four mutations in the envelope proteins responsible for mouse adaptation, including one disrupting a glycosylation site. These mutations led to high-titer viremia, similar to that observed in rats. In 4-week-old mice, infection was cleared after around 5 weeks compared to 2 to 3 weeks for nonadapted virus. In contrast, the mutations led to persistent but attenuated infection in rats, and they partially reverted, accompanied by an increase in viremia. Attenuated infection in rat but not mouse hepatoma cells demonstrated that the characterized mutations were indeed mouse adaptive rather than generally adaptive across species and that species determinants and not immune interactions were responsible for attenuation in rats. Unlike persistent NrHV infection in rats, acute resolving infection in mice was not associated with the development of neutralizing antibodies. Finally, infection of scavenger receptor B-I (SR-BI) knockout mice suggested that adaptation to mouse SR-BI was not a primary function of the identified mutations. Rather, the virus may have adapted to lower dependency on SR-BI, thereby potentially surpassing species-specific differences. In conclusion, we identified specific determinants of NrHV mouse adaptation, suggesting species-specific interactions during entry. IMPORTANCE A prophylactic vaccine is required to achieve the World Health Organization's objective for hepatitis C virus elimination as a serious public health threat. However, the lack of robust immunocompetent animal models supporting hepatitis C virus infection impedes vaccine development as well as studies of immune responses and viral evasion. Hepatitis C virus-related hepaciviruses were discovered in a number of animal species and provide useful surrogate infection models. Norway rat hepacivirus is of particular interest, as it enables studies in rats, an immunocompetent and widely used small laboratory animal model. Its adaptation to robust infection also in laboratory mice provides access to a broader set of mouse genetic lines and comprehensive research tools. The presented mouse-adapted infectious clones will be of utility for reverse genetic studies, and the Norway rat hepacivirus mouse model will facilitate studies of hepacivirus infection for in-depth characterization of virus-host interactions, immune responses, and liver pathology.


Subject(s)
Adaptation, Physiological , Hepacivirus , Hepatitis C , Adaptation, Physiological/genetics , Adaptation, Physiological/immunology , Hepacivirus/genetics , Hepacivirus/immunology , Viremia/immunology , Viremia/virology , Mutation , Animals , Mice , Rats , Hepatitis C/immunology , Hepatitis C/physiopathology , Hepatitis C/virology , Disease Models, Animal , Immunocompromised Host , Cell Line , CD36 Antigens/genetics , CD36 Antigens/immunology
20.
Science ; 378(6617): 263-269, 2022 10 21.
Article in English | MEDLINE | ID: mdl-36264808

ABSTRACT

Hepatitis C virus (HCV) infection is a leading cause of chronic liver disease, cirrhosis, and hepatocellular carcinoma in humans and afflicts more than 58 million people worldwide. The HCV envelope E1 and E2 glycoproteins are essential for viral entry and comprise the primary antigenic target for neutralizing antibody responses. The molecular mechanisms of E1E2 assembly, as well as how the E1E2 heterodimer binds broadly neutralizing antibodies, remain elusive. Here, we present the cryo-electron microscopy structure of the membrane-extracted full-length E1E2 heterodimer in complex with three broadly neutralizing antibodies-AR4A, AT1209, and IGH505-at ~3.5-angstrom resolution. We resolve the interface between the E1 and E2 ectodomains and deliver a blueprint for the rational design of vaccine immunogens and antiviral drugs.


Subject(s)
Hepacivirus , Hepatitis C , Viral Envelope Proteins , Humans , Antiviral Agents/chemistry , Broadly Neutralizing Antibodies , Cryoelectron Microscopy , Hepacivirus/chemistry , Hepacivirus/immunology , Hepatitis C/virology , Viral Envelope Proteins/chemistry , Viral Envelope Proteins/immunology , Protein Multimerization , Viral Hepatitis Vaccines/chemistry , Viral Hepatitis Vaccines/immunology
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