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1.
Emerg Microbes Infect ; 10(1): 37-50, 2021 Dec.
Article in English | MEDLINE | ID: mdl-33296295

ABSTRACT

Hepatitis B e antigen (HBeAg) is a widely used marker both for chronic hepatitis B (CHB) clinical management and HBV-related basic research. However, due to its high amino acid sequence homology to hepatitis B core antigen (HBcAg), most of available anti-HBe antibodies are cross-reactive with HBcAg resulting in high interference against accurate measurement of the status and level of HBeAg. In the study, we generated several monoclonal antibodies (mAbs) targeting various epitopes on HBeAg and HBcAg. Among these mAbs, a novel mAb 16D9, which recognizes the SKLCLG (aa -10 to -5) motif on the N-terminal residues of HBeAg that is absent on HBcAg, exhibited excellent detection sensitivity and specificity in pairing with another 14A7 mAb targeting the HBeAg C-terminus (STLPETTVVRRRGR, aa141 to 154). Based on these two mAbs, we developed a novel chemiluminescent HBeAg immunoassay (NTR-HBeAg) which could detect HBeAg derived from various HBV genotypes. In contrast to widely used commercial assays, the NTR-HBeAg completely eliminated the cross-reactivity with secreted HBcAg from precore mutant (G1896A) virus in either cell culture or patient sera. The improved specificity of the NTR-HBeAg assay enables its applicability in cccDNA-targeting drug screening in cell culture systems and also provides an accurate tool for clinical HBeAg detection.


Subject(s)
Hepatitis B Antibodies/analysis , Hepatitis B e Antigens/chemistry , Hepatitis B virus/genetics , Hepatitis B, Chronic/immunology , Amino Acid Motifs , Antibodies, Monoclonal/analysis , Cell Culture Techniques , Cell Line , Epitopes/immunology , Genotype , Hep G2 Cells , Hepatitis B Core Antigens/chemistry , Hepatitis B Core Antigens/immunology , Hepatitis B e Antigens/immunology , Hepatitis B virus/immunology , Hepatitis B, Chronic/blood , Humans , Luminescent Measurements
2.
Molecules ; 25(15)2020 Jul 24.
Article in English | MEDLINE | ID: mdl-32722086

ABSTRACT

Oxime derivatives of dehydrocholic acid and its esters were designed for anti-hepatitis B virus (HBV) drugs according to principles of assembling active chemical fragments. Twelve compounds were synthesized from dehydrocholic acid by esterification and oxime formation, and their anti-hepatitis B virus (HBV) activities were evaluated with HepG 2.2.15 cells. Results showed that 5 compounds exhibited more effective inhibition of HBeAg than positive control, among them 2b-3 and 2b-1 showed significant anti-HBV activities on inhibiting secretion of HBeAg (IC50 (2b-3) = 49.39 ± 12.78 µM, SI (2b-3) = 11.03; IC50 (2b-1) = 96.64 ± 28.99 µM, SI (2b-1) = 10.35) compared to the Entecavir (IC50 = 161.24 µM, SI = 3.72). Molecular docking studies showed that most of these compounds interacted with protein residues of heparan sulfate proteoglycan (HSPG) in host hepatocyte and bile acid receptor.


Subject(s)
Antiviral Agents/chemical synthesis , Dehydrocholic Acid/analogs & derivatives , Hepatitis B e Antigens/metabolism , Oximes/chemical synthesis , Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Esterification , Guanine/analogs & derivatives , Guanine/pharmacology , Hep G2 Cells , Heparan Sulfate Proteoglycans/chemistry , Heparan Sulfate Proteoglycans/metabolism , Hepatitis B e Antigens/chemistry , Hepatitis B virus/drug effects , Hepatitis B virus/metabolism , Humans , Molecular Docking Simulation , Molecular Structure , Oximes/chemistry , Oximes/pharmacology , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Cytoplasmic and Nuclear/metabolism
3.
Anal Chem ; 92(9): 6495-6501, 2020 05 05.
Article in English | MEDLINE | ID: mdl-32250595

ABSTRACT

The e antigen of hepatitis B (HBeAg) is positively associated with an increased risk of developing liver cancer and cirrhosis in chronic hepatitis B (CHB) patients. Clinical monitoring of HBeAg provides guidance to the treatment of CHB and the assessment of disease progression. We describe here an affinity binding assay for HBeAg, which takes advantage of G-quadruplex aptamers for enhanced binding and stability. We demonstrate a strategy to improve the binding affinity of aptamers by modifying their sequences upon their G-quadruplex and secondary structures. On the basis of predicting a stable G-quadruplex and a secondary structure, we truncated 19 nucleotides (nt) from the primer regions of an 80-nt aptamer, and the resulting 61-nt aptamer enhanced binding affinity by 19 times (Kd = 1.2 nM). We mutated a second aptamer (40 nt) in one loop region and incorporated pyrrolo-deoxycytidine to replace deoxycytidine in another loop. The modified 40-nt aptamer, with a stable G-quadruplex and two modified loops, exhibited a 100 times higher binding affinity for HBeAg (Kd = 0.4 nM) than the unmodified original aptamer. Using the two newly modified aptamers, one serving as the capture and the other as the reporter, we have developed an improved sandwich binding assay for HBeAg. Analyses of HBeAg in serum samples (concentration ranging from 0.1 to 60 ng/mL) of 10 hepatitis B patients, showing consistent results with clinical tests, demonstrate a successful application of the aptamer modification strategy and the associated aptamer binding assay.


Subject(s)
Aptamers, Nucleotide/chemistry , Hepatitis B e Antigens/chemistry , Aptamers, Nucleotide/blood , Binding Sites , G-Quadruplexes , Hepatitis B e Antigens/blood , Hepatitis B, Chronic/blood , Humans , Nucleic Acid Conformation
4.
FEBS Lett ; 594(6): 1052-1061, 2020 03.
Article in English | MEDLINE | ID: mdl-31792961

ABSTRACT

The hepatitis B virus e antigen, an alternative transcript of the core gene, is a secreted protein that maintains viral persistence. The physiological form has extended C termini relative to Cp(-10)149, the construct used in many studies. To examine the role of the C termini, we expressed the constructs Cp(-10)151 and Cp(-10)154, which have additional arginine residues. Both constructs when treated with reductant formed capsids more efficiently than Cp(-10)149. These capsids were also substantially more stable, as measured by thermal denaturation and resistance to urea dissociation. Mutagenesis suggests that electrostatic interactions between the additional arginine residues and glutamate residues on adjacent subunits play a role in the extra stabilization. These findings have implications for the physiological role and biotechnological potential of this protein.


Subject(s)
Capsid/chemistry , Hepatitis B e Antigens/chemistry , Hepatitis B virus/chemistry , Hepatitis B e Antigens/genetics , Hepatitis B virus/genetics , Mutagenesis , Protein Domains , Static Electricity
5.
Sci Rep ; 9(1): 10529, 2019 07 19.
Article in English | MEDLINE | ID: mdl-31324819

ABSTRACT

Despite the high global prevalence of chronic hepatitis B (CHB) infection, datasets covering the whole hepatitis B viral genome from large patient cohorts are lacking, greatly limiting our understanding of the viral genetic factors involved in this deadly disease. We performed deep sequencing of viral samples from patients chronically infected with HBV to investigate the association between viral genome variation and patients' clinical characteristics. We discovered novel viral variants strongly associated with viral load and HBeAg status. Patients with viral variants C1817T and A1838G had viral loads nearly three orders of magnitude lower than patients without those variants. These patients consequently experienced earlier viral suppression while on treatment. Furthermore, we identified novel variants that either independently or in combination with precore mutation G1896A were associated with the transition from HBeAg positive to the negative phase of infection. These observations are consistent with the hypothesis that mutation of the HBeAg open reading frame is an important factor driving CHB patient's HBeAg status. This analysis provides a detailed picture of HBV genetic variation in the largest patient cohort to date and highlights the diversity of plausible molecular mechanisms through which viral variation affects clinical phenotype.


Subject(s)
Genome, Viral , Hepatitis B e Antigens/genetics , Hepatitis B virus/genetics , Hepatitis B, Chronic/virology , Viremia/virology , Adult , Clinical Trials, Phase III as Topic , Dimerization , Disease Progression , Female , Genome-Wide Association Study , Hepatitis B Surface Antigens/blood , Hepatitis B e Antigens/blood , Hepatitis B e Antigens/chemistry , Hepatitis B virus/isolation & purification , Hepatitis B, Chronic/blood , High-Throughput Nucleotide Sequencing , Humans , Male , Middle Aged , Models, Molecular , Multicenter Studies as Topic , Mutation, Missense , Open Reading Frames , Phenotype , Point Mutation , Protein Conformation , Viral Load
6.
Structure ; 26(10): 1314-1326.e4, 2018 10 02.
Article in English | MEDLINE | ID: mdl-30100358

ABSTRACT

Hepatitis B virus (HBV) is the leading cause of liver disease worldwide. While an adequate vaccine is available, current treatment options are limited, not highly effective, and associated with adverse effects, encouraging the development of alternative therapeutics. The HBV core gene encodes two different proteins: core, which forms the viral nucleocapsid, and pre-core, which serves as an immune modulator with multiple points of action. The two proteins mostly have the same sequence, although they differ at their N and C termini and in their dimeric arrangements. Previously, we engineered two human-framework antibody fragments (Fab/scFv) with nano- to picomolar affinities for both proteins. Here, by means of X-ray crystallography, analytical ultracentrifugation, and electron microscopy, we demonstrate that the antibodies have non-overlapping epitopes and effectively block biologically important assemblies of both proteins. These properties, together with the anticipated high tolerability and long half-lives of the antibodies, make them promising therapeutics.


Subject(s)
Antibodies, Monoclonal/metabolism , Hepatitis B Core Antigens/chemistry , Hepatitis B e Antigens/chemistry , Hepatitis B virus/metabolism , Animals , Antibodies, Monoclonal/chemistry , Antibodies, Viral , Binding Sites , Crystallography, X-Ray , Hepatitis B Core Antigens/metabolism , Hepatitis B e Antigens/metabolism , Hepatitis B virus/chemistry , Humans , Microscopy, Electron , Models, Molecular , Protein Binding , Protein Structure, Quaternary , Ultracentrifugation
7.
Anal Sci ; 34(3): 291-296, 2018.
Article in English | MEDLINE | ID: mdl-29526895

ABSTRACT

Cationic poly-diallyldimethylammonium (PDADMAC), green CdTe quantum dots (QDs) or red CdS coated CdTe QDs, and anionic polyacrylic acid (PAA) were respectively assembled on the nano-carrier SiO2 to prepare green fluorescence composite nanoparticles (GF-QDs) and red ones (RF-QDs) with the structure SiO2/PDADMAC/QD/PDADMAC/PAA. The sandwich structure "PDADMAC/QD/PDADMAC" on the nano-carrier not only realized the protection to fluorescence of QDs but also avoided the fluorescence shielding of silica shell for the assembled QDs. In 7 days, the diluent solutions of GF-QD and RF-QD all have a very stable fluorescence. On the contrary, the fluorescence of diluent solutions of red and green QDs reduced by 75.99 and 94.35%, respectively. Indeed, they have not fluorescent shielding and have a very slight fluorescent enhancement. Based on GF-QD and RF-QD, the simultaneous determination of Hepatitis B e antigen and surface antigen has been established. Their determination in buffer and plasma all showed good precision and accuracy.


Subject(s)
Hepatitis B Surface Antigens/analysis , Hepatitis B e Antigens/analysis , Polyelectrolytes/chemistry , Quantum Dots/chemistry , Silicon Dioxide/chemistry , Spectrometry, Fluorescence/methods , Color , Hepatitis B Surface Antigens/chemistry , Hepatitis B e Antigens/chemistry
8.
Biosens Bioelectron ; 102: 189-195, 2018 Apr 15.
Article in English | MEDLINE | ID: mdl-29136590

ABSTRACT

A sensitive sandwich-type electrochemical immunosensor for the detection of hepatitis B e antigen (HBeAg) was successfully developed based on the gold@palladium nanoparticles (Au@Pd NPs) loaded by molybdenum disulfide functionalized multiwalled carbon nanotubes (Au@Pd/MoS2@MWCNTs). The resultant nanocomposites not only possessed high specific surface area and good biocompatibility, but also exhibited excellent electro-catalytical property. Au NPs functionalized porous graphene oxide (p-GO@Au) were used as sensing platforms and primary antibodies carriers, which can accelerate the electron transfer and improve the load capacity of primary antibodies (Ab1), improving the sensitivity of the immunosensor. Under optimal conditions, the designed immunosensor could detect target HBeAg concentration in the range from 0.1pg/mL to 500pg/mL, with a low detection limit of 26fg/mL (S/N = 3) for HBeAg. Additionally, the designed immunosensor showed excellent specificity, good reproducibility and acceptable stability. The satisfactory results in analysis of human serum samples indicated that it had potential application in clinical monitoring of tumor markers.


Subject(s)
Biosensing Techniques , Hepatitis B e Antigens/isolation & purification , Hepatitis B/diagnosis , Immunoassay/methods , Disulfides/chemistry , Gold/chemistry , Graphite/chemistry , Hepatitis B e Antigens/chemistry , Humans , Limit of Detection , Metal Nanoparticles/chemistry , Molybdenum/chemistry , Palladium/chemistry
9.
J Biol Chem ; 292(40): 16760-16772, 2017 10 06.
Article in English | MEDLINE | ID: mdl-28842495

ABSTRACT

Hepatitis B virus (HBV) infection afflicts millions worldwide, causing cirrhosis and liver cancer. HBV e-antigen (HBeAg), a clinical marker for disease severity, is a soluble variant of the viral capsid protein. HBeAg is not required for viral replication but is implicated in establishing immune tolerance and chronic infection. The structure of recombinant e-antigen (rHBeAg) was recently determined, yet to date, the exact nature and quantitation of HBeAg still remain uncertain. Here, to further characterize HBeAg, we used phage display to produce a panel of chimeric rabbit/human monoclonal antibody fragments (both Fab and scFv) against rHBeAg. Several of the Fab/scFv, expressed in Escherichia coli, had unprecedentedly high binding affinities (Kd ∼10-12 m) and high specificity. We used Fab/scFv in the context of an enzyme-linked immunosorbent assay (ELISA) for HBeAg quantification, which we compared with commercially available kits and verified with seroconversion panels, the WHO HBeAg standard, rHBeAg, and patient plasma samples. We found that the specificity and sensitivity are superior to those of existing commercial assays. To identify potential fine differences between rHBeAg and HBeAg, we used these Fabs in microscale immunoaffinity chromatography to purify HBeAg from individual patient plasmas. Western blotting and MS results indicated that rHBeAg and HBeAg are essentially structurally identical, although HBeAg from different patients exhibits minor carboxyl-terminal heterogeneity. We discuss several potential applications for the humanized Fab/scFv.


Subject(s)
Hepatitis B Antibodies/immunology , Hepatitis B e Antigens/immunology , Hepatitis B virus/immunology , Hepatitis B/immunology , Recombinant Fusion Proteins/immunology , Single-Chain Antibodies/immunology , Animals , Enzyme-Linked Immunosorbent Assay/methods , Hepatitis B/blood , Hepatitis B/drug therapy , Hepatitis B Antibodies/chemistry , Hepatitis B Antibodies/genetics , Hepatitis B Antibodies/therapeutic use , Hepatitis B e Antigens/blood , Hepatitis B e Antigens/chemistry , Hepatitis B virus/chemistry , Humans , Rabbits , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/therapeutic use , Single-Chain Antibodies/chemistry , Single-Chain Antibodies/genetics , Single-Chain Antibodies/therapeutic use
10.
Anal Chim Acta ; 956: 32-39, 2017 Mar 01.
Article in English | MEDLINE | ID: mdl-28093123

ABSTRACT

A facile method for the preparation of stable isotopically labeled peptides was developed by means of filter-assisted tryptic 16O/18O water labeling, which could be directly applied to the determination of hepatitis B virus infection from human serum with tandem mass spectrometry. Tryptic peptides of hepatitis B surface antigen or hepatitis B e antigen from different subtypes of hepatitis B virus were synthesized with traditional solid-phase peptide synthesis as potential biomarkers. Trypsin catalyzed oxygen-18 exchange at their amidated c-terminus of arginine or lysine residue. The protease catalyzed oxygen-18 to oxygen-16 back exchange reaction was eliminated due to the complete removal of trypsin by the centrifugal filter containing a thin membrane associated with molecular weight cut-off of 10 KDa. The synthetic isotopic peptides were spiked into trichloroacetic acid/acetone precipitated human serum as internal standards and were selectively detected with multiplexed parallel reaction monitoring on a hybrid quadrupole-orbitrap mass spectrometer. The limit of detection for all synthetic peptides were in the range of 0.09 fmol-1.13 fmol. The results indicated that the peptide YLWEWASVR derived from hepatitis B surface antigen was quantified approximately 200 fmol per µl serum and may serve as a diagnostic biomarker for the detection of hepatitis B virus infected disease.


Subject(s)
Hepatitis B/diagnosis , Peptides/chemical synthesis , Proteomics , Hepatitis B Surface Antigens/chemistry , Hepatitis B e Antigens/chemistry , Humans , Isotope Labeling , Limit of Detection , Mass Spectrometry , Oxygen Isotopes , Trypsin
11.
World J Gastroenterol ; 22(17): 4287-96, 2016 May 07.
Article in English | MEDLINE | ID: mdl-27158197

ABSTRACT

Despite the availability of an effective vaccine, hepatitis B virus (HBV) infection remains a major health problem, with more than 350 million chronically infected people worldwide and over 1 million annual deaths due to cirrhosis and liver cancer. HBV mutations are primarily generated due both to a lack of proofreading capacity by HBV polymerase and to host immune pressure, which is a very important factor for predicting disease progression and therapeutic outcomes. Several types of HBV precore/core (preC/C) mutations have been described to date. The host immune response against T cells drives mutation in the preC/C region. Specifically, preC/C mutations in the MHC class II restricted region are more common than in other regions and are significantly related to hepatocellular carcinoma. Certain mutations, including preC G1896A, are also significantly related to HBeAg-negative chronic infection. This review article mainly focuses on the HBV preC/C mutations that are related to disease severity and on the HBeAg serostatus of chronically infected patients.


Subject(s)
Hepatitis B Core Antigens/genetics , Hepatitis B virus/genetics , Hepatitis B, Chronic/virology , Mutation , Carcinoma, Hepatocellular/etiology , Hepatitis B Core Antigens/chemistry , Hepatitis B e Antigens/chemistry , Hepatitis B, Chronic/complications , Humans , Liver Neoplasms/etiology , Severity of Illness Index
12.
PLoS One ; 10(6): e0130392, 2015.
Article in English | MEDLINE | ID: mdl-26121361

ABSTRACT

The efficacy of entecavir (ETV) and tenofovir (TDF) for the treatment of nucleos(t)ide analogue (NA)-experienced chronic hepatitis B (CHB) patients has been little studied. Here, we compare the efficacy of both ETV and TDF in NA-experienced CHB patients without detectable genotypic resistance. This retrospective cohort study included consecutive NA-experienced patients who had neither current nor previous genotypic resistance and had received ETV or TDF for at least 6 months. Overall, 202 patients (146 patients in the ETV group and 56 in the TDF group) were analyzed. The cumulative probabilities of complete virologic suppression (CVS) at month 12 were 76.1% in the ETV group and 95.0% in the TDF group (P<0.001), respectively. The TDF-treated group achieved CVS more rapidly than the ETV group for both Hepatitis B e antigen (HBeAg)-negative and -positive patients (P = 0.006 and < 0.001, respectively), and for those with both low (< 2,000 IU/mL) and high (≥ 2,000 IU/mL) HBV DNA levels (P = 0.01 and 0.002, respectively). TDF group had an increased probability of achieving CVS (hazard ratio, 2.242; 95% confidence interval, 1.587-3.165; P = 0.001), after adjustment for HBV DNA level, the presence of HBeAg, and a history of CVS during prior treatment. During the treatment period, 23 patients (15.8%) in the ETV group developed virologic breakthrough, compared to none in the TDF group. The cumulative probabilities of developing virologic breakthrough and ETV-resistance at month 24 were 9.7% and 5.3%, respectively. In conclusion, TDF is preferable to ETV for achieving CVS in NA-experienced CHB patients without genotypic resistance.


Subject(s)
Antiviral Agents/therapeutic use , Guanine/analogs & derivatives , Hepatitis B, Chronic/drug therapy , Tenofovir/therapeutic use , Adult , Cohort Studies , DNA, Viral/genetics , Drug Resistance, Viral/genetics , Female , Genotype , Guanine/therapeutic use , Hepatitis B e Antigens/chemistry , Hepatitis B virus , Humans , Male , Middle Aged , Multivariate Analysis , Nucleotides/therapeutic use , Probability , Retrospective Studies , Time Factors , Treatment Outcome
13.
PLoS One ; 9(11): e112306, 2014.
Article in English | MEDLINE | ID: mdl-25393280

ABSTRACT

AIM: To evaluate HBV quasispecies (QA) complexity in the preCore/Core regions in relation to HBeAg status, and explore QA changes under natural evolution and nucleoside analogue (NUC) treatment. METHODS: Ultra-deep pyrosequencing of HBV preCore/Core regions in 30 sequential samples (baseline [diagnosis], treatment-free, and treatment-nonresponse) from 10 retrospectively selected patients grouped according to HBeAg status over time: HBeAg+ (N = 4), HBeAg- (N = 2), and fluctuating HBeAg (transient seroreversion/seroconversion pattern) (N = 4). QA complexity was defined by Shannon entropy, mutation frequency, nucleotide diversity, and mutation frequency of amino acids (MfAA) in preCore and Core. RESULTS: The QA was less complex in HBeAg+ than in HBeAg- or fluctuating HBeAg. High complexity in preCore was associated with decreased viral replication (preCore MfAA negatively correlated with HBV-DNA, p = 0.005). QA complexity in the treatment-free period negatively correlated with values seen during treatment. Specific variants were mainly selected in the Core region in HBeAg- and fluctuating HBeAg patients, suggesting higher immune pressure than in HBeAg+. CONCLUSIONS: The negative correlation between QA natural evolution and on-treatment evolution indicates the importance of pre-treatment QA study to predict QA changes in NUC nonresponders. Study of QA complexity could be useful for managing HBV infection.


Subject(s)
DNA, Viral , Evolution, Molecular , Hepatitis B virus/genetics , Hepatitis B/virology , High-Throughput Nucleotide Sequencing/methods , Adult , Aged , Female , Hepatitis B/drug therapy , Hepatitis B e Antigens/chemistry , Hepatitis B virus/classification , Humans , Longitudinal Studies , Male , Middle Aged , Mutation , Nucleotides/chemistry , Reproducibility of Results , Retrospective Studies , Treatment Outcome
14.
J Org Chem ; 79(12): 5432-47, 2014 Jun 20.
Article in English | MEDLINE | ID: mdl-24824117

ABSTRACT

Nineteen new highly oxygenated norbisabolane sesquiterpenoids, phyllanthacidoid acid methyl ester (1), and C-T (4-21), were isolated from Phyllanthus acidus Skeels, together with two known ones, phyllanthusols A (2) and B (3), whose sugar moiety was revised as glucosamine-N-acetate, rather than the previously assigned mannosamine-N-acetate. Compounds 2 and 3 were renamed respectively as phyllanthacidoids A (2) and B (3) to avoid confusion. All of the isolates except for 1 are glycosides, whose saccharide moieties possess a pentaoxy cyclohexane (scyllo quercitol) connecting with glucosamine-N-acetate or glucosyl moieties, which are first examples in natural products. Phyllanthacidoids N-R (15-19) with 8R configurations and/or 5,8-diketal skeleton, are unprecedented structures among norbisabolane sesquiterpenoids. Phyllanthacidoids S (20) and T (21) have the unusual tricyclo [3.1.1.1] oxygen bridge skeleton formed by a diketal system, of which the relative configurations of the aliphatic chain were assigned on the basis of heteronuclear coupling constants. The absolute configurations of compounds (1-21) were established by means of calculated electronic circular dichroism (ECD) and coupling constants. Compounds 1-5, 7-9, 10, and 14 displayed potential anti-hepatitis B virus (HBV) activities, with IC50 values of 0.8-36 µM against HBV surface antigen (HBsAg) and HBV excreted antigen (HBeAg), and the results indicated that the 5-ketal group and sugar moieties had contributions to the selectivity of HBsAg and HBeAg.


Subject(s)
Antiviral Agents/chemistry , Antiviral Agents/isolation & purification , Antiviral Agents/pharmacology , Benzofurans/chemistry , Benzofurans/pharmacology , Disaccharides/chemistry , Disaccharides/pharmacology , Glycosides/chemistry , Hepatitis B Surface Antigens/chemistry , Hepatitis B e Antigens/chemistry , Hepatitis B virus/chemistry , Hepatitis B virus/drug effects , Phyllanthus/chemistry , Sesquiterpenes/chemistry , Sesquiterpenes/isolation & purification , Sesquiterpenes/pharmacology , Spiro Compounds/chemistry , Spiro Compounds/pharmacology , Benzofurans/isolation & purification , Disaccharides/isolation & purification , Hepatitis B Surface Antigens/immunology , Hepatitis B e Antigens/immunology , Humans , Inhibitory Concentration 50 , Molecular Structure , Quantum Theory , Spiro Compounds/isolation & purification , Stereoisomerism
15.
Protein Sci ; 23(7): 884-96, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24715628

ABSTRACT

Hepatitis B virus core-antigen (capsid protein) and e-antigen (an immune regulator) have almost complete sequence identity, yet the dimeric proteins (termed Cp149d and Cp(-10)149d , respectively) adopt quite distinct quaternary structures. Here we use hydrogen deuterium exchange-mass spectrometry (HDX-MS) to study their structural properties. We detect many regions that differ substantially in their HDX dynamics. Significantly, whilst all regions in Cp(-10)149d exchange by EX2-type kinetics, a number of regions in Cp149d were shown to exhibit a mixture of EX2- and EX1-type kinetics, hinting at conformational heterogeneity in these regions. Comparison of the HDX of the free Cp149d with that in assembled capsids (Cp149c ) indicated increased resistance to exchange at the C-terminus where the inter-dimer contacts occur. Furthermore, evidence of mixed exchange kinetics were not observed in Cp149c , implying a reduction in flexibility upon capsid formation. Cp(-10)149d undergoes a drastic structural change when the intermolecular disulphide bridge is reduced, adopting a Cp149d -like structure, as evidenced by the detected HDX dynamics being more consistent with Cp149d in many, albeit not all, regions. These results demonstrate the highly dynamic nature of these similar proteins. To probe the effect of these structural differences on the resulting antigenicity, we investigated binding of the antibody fragment (Fab E1) that is known to bind a conformational epitope on the four-helix bundle. Whilst Fab E1 binds to Cp149c and Cp149d , it does not bind non-reduced and reduced Cp(-10)149d , despite unhindered access to the epitope. These results imply a remarkable sensitivity of this epitope to its structural context.


Subject(s)
Deuterium Exchange Measurement/methods , Hepatitis B Core Antigens/chemistry , Hepatitis B e Antigens/chemistry , Hepatitis B virus/chemistry , Mass Spectrometry/methods , Hepatitis B Core Antigens/metabolism , Hepatitis B e Antigens/metabolism , Immunoglobulin Fab Fragments/metabolism , Kinetics , Protein Conformation , Protein Multimerization , Protein Structure, Quaternary
16.
PLoS One ; 8(2): e56110, 2013.
Article in English | MEDLINE | ID: mdl-23405258

ABSTRACT

BACKGROUND: RNA interference (RNAi) mediated by small interfering RNAs (siRNAs) or short hairpin RNAs (shRNAs) has become a powerful genetic tool for conducting functional studies. Previously, vector-based shRNA-expression strategies capable of inducing RNAi in viable cells have been developed, however, these vector systems have some disadvantages, either because they were error-prone or cost prohibitive. RESULTS: In this report we described the development of a simple, robust shRNA expression system utilizing 1 long oligonucleotide or 2 short oligonucleotides for half the cost of conventional shRNA construction methods and with a >95% cloning success rate. The shRNA loop sequence and stem structure were also compared and carefully selected for better RNAi efficiency. Furthermore, an easier strategy was developed based on isocaudomers which permit rapid combination of the most efficient promoter-shRNA cassettes. Finally, using this method, the conservative target sites for hepatitis B virus (HBV) knockdown were systemically screened and HBV antigen expression shown to be successfully suppressed in the presence of connected multiple shRNAs both in vitro and in vivo. CONCLUSION: This novel design describes an inexpensive and effective way to clone and express single or multiple shRNAs from the same vector with the capacity for potent and effective silencing of target genes.


Subject(s)
Gene Silencing , Genetic Vectors , Hepatitis B Surface Antigens/genetics , Hepatitis B e Antigens/genetics , Hepatitis B virus/genetics , RNA Interference , RNA, Small Interfering/genetics , Animals , Base Sequence , Carcinoma, Hepatocellular/genetics , Carcinoma, Hepatocellular/virology , Gene Expression Regulation, Viral , Genetic Engineering , Hepatitis B Surface Antigens/chemistry , Hepatitis B Surface Antigens/metabolism , Hepatitis B e Antigens/chemistry , Hepatitis B e Antigens/metabolism , Humans , Liver Neoplasms/genetics , Liver Neoplasms/virology , Mice , Mice, Inbred C57BL , Molecular Sequence Data , Tumor Cells, Cultured
17.
Structure ; 21(1): 133-142, 2013 Jan 08.
Article in English | MEDLINE | ID: mdl-23219881

ABSTRACT

Chronic hepatitis B virus (HBV) infection afflicts millions worldwide with cirrhosis and liver cancer. HBV e-antigen (HBeAg), a clinical marker for disease severity, is a nonparticulate variant of the protein (core antigen, HBcAg) that forms the building-blocks of capsids. HBeAg is not required for virion production, but is implicated in establishing immune tolerance and chronic infection. Here, we report the crystal structure of HBeAg, which clarifies how the short N-terminal propeptide of HBeAg induces a radically altered mode of dimerization relative to HBcAg (∼140° rotation), locked into place through formation of intramolecular disulfide bridges. This structural switch precludes capsid assembly and engenders a distinct antigenic repertoire, explaining why the two antigens are cross-reactive at the T cell level (through sequence identity) but not at the B cell level (through conformation). The structure offers insight into how HBeAg may establish immune tolerance for HBcAg while evading its robust immunogenicity.


Subject(s)
Capsid Proteins/chemistry , Hepatitis B Core Antigens/chemistry , Hepatitis B e Antigens/chemistry , Hepatitis B virus/ultrastructure , Capsid/ultrastructure , Capsid Proteins/ultrastructure , Crystallography, X-Ray , Hepatitis B virus/immunology , Immune Evasion , Molecular Mimicry , Protein Multimerization , Protein Precursors/chemistry , Protein Structure, Quaternary , Protein Structure, Secondary
18.
J Infect Dis ; 206(3): 415-20, 2012 Aug 01.
Article in English | MEDLINE | ID: mdl-22615316

ABSTRACT

We previously reported that hepatitis B virus (HBV) e antigen (HBeAg) inhibits production of interleukin 6 by suppressing NF-κB activation. NF-κB is known to be activated through receptor-interacting serine/threonine protein kinase 2 (RIPK2), and we examined the mechanisms of interleukin 6 regulation by HBeAg. HBeAg inhibits RIPK2 expression and interacts with RIPK2, which may represent 2 mechanisms through which HBeAg blocks nucleotide-binding oligomerization domain-containing protein 1 ligand-induced NF-κB activation in HepG2 cells. Our findings identified novel molecular mechanisms whereby HBeAg modulates intracellular signaling pathways by targeting RIPK2, supporting the concept that HBeAg could impair both innate and adaptive immune responses to promote chronic HBV infection.


Subject(s)
Hepatitis B e Antigens/metabolism , Interleukin-6/metabolism , Receptor-Interacting Protein Serine-Threonine Kinase 2/metabolism , Animals , Cell Line , Down-Regulation , Gene Expression Regulation/physiology , Hepatitis B e Antigens/chemistry , Hepatitis B virus , Humans , Interleukin-6/genetics , NF-kappa B/genetics , NF-kappa B/metabolism
19.
PLoS One ; 7(2): e32553, 2012.
Article in English | MEDLINE | ID: mdl-22384271

ABSTRACT

Hepatitis B virus (HBV) is one of the most common DNA viruses that can cause aggressive hepatitis, cirrhosis and hepatocellular carcinoma. Although many people are persistently infected with HBV, the kinetics in serum levels of viral loads and the host immune responses vary from person to person. HBV precore/core open reading frame (ORF) encoding proteins, hepatitis B e antigen (HBeAg) and core antigen (HBcAg), are two indicators of active viral replication. The aim of this study was to discover a variety of amino acid covariances in responses to viral kinetics, seroconversion and genotypes during the course of HBV infection. A one year follow-up study was conducted with a total number of 1,694 clones from 23 HBeAg-positive chronic hepatitis B patients. Serum alanine aminotransferase, HBV DNA and HBeAg levels were measured monthly as criteria for clustering patients into several different subgroups. Monthly derived multiple precore/core ORFs were directly sequenced and translated into amino acid sequences. For each subgroup, time-dependent covariances were identified from their time-varying sequences over the entire follow-up period. The fluctuating, wavering, HBeAg-nonseroconversion and genotype C subgroups showed greater degrees of covariances than the stationary, declining, HBeAg-seroconversion and genotype B. Referring to literature, mutation hotspots within our identified covariances were associated with the infection process. Remarkably, hotspots were predominant in genotype C. Moreover, covariances were also identified at early stage (spanning from baseline to a peak of serum HBV DNA) in order to determine the intersections with aforementioned time-dependent covariances. Preserved covariances, namely representative covariances, of each subgroup are visually presented using a tree-based structure. Our results suggested that identified covariances were strongly associated with viral kinetics, seroconversion and genotypes. Moreover, representative covariances may benefit clinicians to prescribe a suitable treatment for patients even if they have no obvious symptoms at the early stage of HBV infection.


Subject(s)
Hepatitis B Core Antigens/genetics , Hepatitis B e Antigens/chemistry , Hepatitis B virus/chemistry , Hepatitis B/virology , Adult , Alanine Transaminase/blood , Algorithms , DNA, Viral/genetics , Female , Genotype , Hepatitis B Core Antigens/chemistry , Humans , Kinetics , Male , Middle Aged , Models, Statistical , Open Reading Frames , Reproducibility of Results , Risk
20.
Biochem Biophys Res Commun ; 417(4): 1310-5, 2012 Jan 27.
Article in English | MEDLINE | ID: mdl-22234307

ABSTRACT

The hepatitis B virus (HBV) Precore protein is processed through the secretory pathway directly as HBeAg or with the generation of an intermediate (P20). Precore gene has been shown to be implicated in viral persistence, but the functions of HBeAg and its precursors have not been fully elucidated. We show that the secreted proteins HBeAg and P20 interact with T cell surface and alter Kit-225 and primary T cells proliferation, a process which may facilitate the establishment of HBV persistence. Our data indicate that the N-terminal end of Precore is important for these inhibitory effects and exclude that they are dependent on the association of HBeAg and P20 with two characterized cell surface ligands, the Interleukin-1 Receptor Accessory Protein and gC1qR (present study).


Subject(s)
Cell Proliferation , Hepatitis B e Antigens/immunology , Hepatitis B virus/immunology , Lymphocyte Activation , T-Lymphocytes/immunology , T-Lymphocytes/virology , Amino Acid Sequence , Carrier Proteins/immunology , Cells, Cultured , Hepatitis B e Antigens/chemistry , Hepatitis B e Antigens/genetics , Humans , Interleukin-1 Receptor Accessory Protein/immunology , Mitochondrial Proteins/immunology , Molecular Sequence Data
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