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1.
ACS Nano ; 18(28): 18257-18281, 2024 Jul 16.
Article in English | MEDLINE | ID: mdl-38973121

ABSTRACT

A major impediment to the clinical translation of DNA tiling nanostructures is a technical bottleneck for the programmable assembly of DNA architectures with well-defined local geometry due to the inability to achieve both sufficient structural rigidity and a large framework. In this work, a Y-backbone was inserted into each face to construct a superlarge, sufficiently rigidified tetrahedral DNA nanostructure (called RDT) with extremely high efficiency. In RDT, the spatial size increased by 6.86-fold, and the structural rigidity was enhanced at least 4-fold, contributing to an ∼350-fold improvement in the resistance to nucleolytic degradation even without a protective coating. RDT can be mounted onto an artificial lipid-bilayer membrane with molecular-level precision and well-defined spatial orientation that can be validated using the fluorescence resonance energy transfer (FRET) assay. The spatial orientation of Y-shaped backbone-rigidified RDT is unachievable for conventional DNA polyhedrons and ensures a high level of precision in the geometric positioning of diverse biomolecules with an approximately homogeneous environment. In tests of RDT, surface-confined horseradish peroxidase (HRP) exhibited nearly 100% catalytic activity and targeting aptamer-immobilized gold nanoparticles showed 5.3-fold enhanced cellular internalization. Significantly, RDT exhibited a 27.5-fold enhanced structural stability in a bodily environment and did not induce detectable systemic toxicity.


Subject(s)
DNA , Fluorescence Resonance Energy Transfer , Nanostructures , DNA/chemistry , Nanostructures/chemistry , Humans , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Animals , Nucleic Acid Conformation , Gold/chemistry , Lipid Bilayers/chemistry , Mice
2.
ACS Appl Mater Interfaces ; 16(28): 37248-37254, 2024 Jul 17.
Article in English | MEDLINE | ID: mdl-38957146

ABSTRACT

Gas cluster ion beam (GCIB)-assisted deposition is used to build multilayered protein-based structures. In this process, Ar3000-5000+ clusters bombard and sputter molecules from a reservoir (target) to a collector, an operation that can be sequentially repeated with multiple targets. The process occurs under a vacuum, making it adequate for further sample conservation in the dry state, since many proteins do not have long-term storage stability in the aqueous state. First of all, the stability in time and versatility in terms of molecule selection are demonstrated with the fabrication of peptide multilayers featuring a clear separation. Then, lysozyme and trypsin are used as protein models to show that the activity remaining on the collector after deposition is linearly proportional to the argon ion dose. The energy per atom (E/n) of the Ar clusters is a parameter that was also changed for lysozyme deposition, and its increase negatively affects activity. The intact detection of larger protein molecules by SDS-PAGE gel electrophoresis and a bioassay (trypsin at ≈25 kDa and glucose oxidase (GOx) at ≈80 kDa) is demonstrated. Finally, GOx and horseradish peroxidase, two proteins involved in the same enzymatic cascade, are successively deposited on ß-d-glucose to build an on-demand release material in which the enzymes and the substrate (ß-d-glucose) are combined in a dry trilayer, and the reaction occurs only upon reintroduction in aqueous medium.


Subject(s)
Glucose Oxidase , Horseradish Peroxidase , Muramidase , Trypsin , Muramidase/chemistry , Muramidase/metabolism , Glucose Oxidase/chemistry , Glucose Oxidase/metabolism , Trypsin/chemistry , Trypsin/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Peptides/chemistry , Animals , Glucose/chemistry
3.
ACS Appl Mater Interfaces ; 16(28): 36953-36961, 2024 Jul 17.
Article in English | MEDLINE | ID: mdl-38976781

ABSTRACT

Metal-organic frameworks (MOFs) are favorable hosting materials for fixing enzymes to construct enzyme@MOF composites and to expand the applications of biocatalysts. However, the rigid structure of MOFs without tunable hollow voids and a confinement effect often limits their catalytic activities. Taking advantage of the smart soft polymers to overcome the limitation, herein, a protection protocol to encapsulate the enzyme in zeolitic imidazolate framework-8 (ZIF-8) was developed using a glutathione-sensitive liposome (L) as a soft template. Glucose oxidase (GOx) and horseradish peroxidase (HRP) were first anchored on a light- and thermoresponsive porous poly(styrene-maleic anhydride-N,N-dimethylaminoethyl methacrylate-spiropyran) membrane (PSMDSP) to produce PSMDSP@GOx-HRP, which could provide a confinement effect by switching the UV irradiation or varying the temperature. Afterward, embedding PSMDSP@GOx-HRP in L and encapsulating PSMDSP@GOx-HRP@L into hollow ZIF-8 (HZIF-8) to form PSMDSP@GOx-HRP@HZIF-8 composites were performed, which proceeded during the crystallization of the framework following the removal of L by adding glutathione. Impressively, the biocatalytic activity of the composites was 4.45-fold higher than that of the free enzyme under UV irradiation at 47 °C, which could benefit from the confinement effect of PSMDSP and the conformational freedom of the enzyme in HZIF-8. The proposed composites contributed to the protection of the enzyme against harsh conditions and exhibited superior stability. Furthermore, a colorimetric assay based on the composites for the detection of serum glucose was established with a linearity range of 0.05-5.0 mM, and the calculated LOD value was 0.001 mM in a cascade reaction system. This work provides a universal design idea and a versatile technique to immobilize enzymes on soft polymer membranes that can be encapsulated in porous rigid MOF-hosts. It also holds potential for the development of smart polymer@enzyme@HMOFs biocatalysts with a tunable confinement effect and high catalytic performance.


Subject(s)
Biocatalysis , Enzymes, Immobilized , Glucose Oxidase , Horseradish Peroxidase , Metal-Organic Frameworks , Metal-Organic Frameworks/chemistry , Glucose Oxidase/chemistry , Glucose Oxidase/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Temperature , Polymers/chemistry , Zeolites/chemistry , Light , Liposomes/chemistry
4.
BMC Microbiol ; 24(1): 252, 2024 Jul 09.
Article in English | MEDLINE | ID: mdl-38982378

ABSTRACT

The present study aimed to develop a system using a combination of enzymatic and microbial degradation techniques for removing phenol from contaminated water. In our prior research, the HRP enzyme extracted from horseradish roots was utilized within a core-shell microcapsule to reduce phenolic shock, serving as a monolayer column. To complete the phenol removal process, a second column containing degrading microorganisms was added to the last column in this research. Phenol-degrading bacteria were isolated from different microbial sources on a phenolic base medium. Additionally, encapsulated calcium peroxide nanoparticles were used to provide dissolved oxygen for the microbial population. Results showed that the both isolated strains, WC1 and CC1, were able to completely remove phenol from the contaminated influent water the range within 5 to 7 days, respectively. Molecular identification showed 99.8% similarity for WC1 isolate to Stenotrophomonas rizophila strain e-p10 and 99.9% similarity for CC1 isolate to Bacillus cereus strain IAM 12,605. The results also indicated that columns using activated sludge as a microbial source had the highest removal rate, with the microbial biofilm completely removing 100% of the 100 mg/L phenol concentration in contaminated influent water after 40 days. Finally, the concurrent use of core-shell microcapsules containing enzymes and capsules containing Stenotrophomonas sp. WC1 strain in two continuous column reactors was able to completely remove phenol from polluted water with a concentration of 500 mg/L for a period of 20 days. The results suggest that a combination of enzymatic and microbial degrading systems can be used as a new system to remove phenol from polluted streams with higher concentrations of phenol by eliminating the shock of phenol on the microbial population.


Subject(s)
Biodegradation, Environmental , Phenol , Water Pollutants, Chemical , Phenol/metabolism , Water Pollutants, Chemical/metabolism , Horseradish Peroxidase/metabolism , Horseradish Peroxidase/chemistry , Water Purification/methods , Bacteria/metabolism , Bacteria/isolation & purification , Bacteria/genetics , Bacteria/classification , Biofilms/growth & development , Armoracia/metabolism , Sewage/microbiology , Bacillus cereus/metabolism , Bacillus cereus/isolation & purification , Bacillus cereus/enzymology
5.
Molecules ; 29(13)2024 Jun 24.
Article in English | MEDLINE | ID: mdl-38998952

ABSTRACT

The sensitivity of immunoassays is generally limited by the low signal reporter/recognition element ratio. Nanomaterials serving as the carriers can enhance the loading number of signal reporters, thus improving the detection sensitivity. However, the general immobilization strategies, including direct physical adsorption and covalent coupling, may cause the random orientation and conformational change in proteins, partially or completely suppressing the enzymatic activity and the molecular recognition ability. In this work, we proposed a strategy to load recognition elements of antibodies and enzyme labels using boronic acid-modified metal-organic frameworks (MOFs) as the nanocarriers for signal amplification. The conjugation strategy was proposed based on the boronate ester interactions between the carbohydrate moieties in antibodies and enzymes and the boronic acid moieties on MOFs. Both enzymes and MOFs could catalyze the oxidation of 3,3',5,5'-tetramethylbenzidine (TMB) by H2O2, therefore achieving dual signal amplification. To indicate the feasibility and sensitivity of the strategy, colorimetric immunoassays of prostate specific antigen (PSA) were performed with boronic acid-modified Cu-MOFs as peroxidase mimics to catalyze TMB oxidation and nanocarriers to load antibody and enzyme (horseradish peroxidase, HRP). According to the change in the absorbance intensity of the oxidized TMB (oxTMB), PSA at the concentration range of 1~250 pg/mL could be readily determined. In addition, this work presented a site-specific and oriented conjugation strategy for the modification of nanolabels with recognition elements and signal reporters, which should be valuable for the design of novel biosensors with high sensitivity and selectivity.


Subject(s)
Boronic Acids , Colorimetry , Metal-Organic Frameworks , Metal-Organic Frameworks/chemistry , Colorimetry/methods , Boronic Acids/chemistry , Immunoassay/methods , Humans , Benzidines/chemistry , Oxidation-Reduction , Prostate-Specific Antigen/analysis , Hydrogen Peroxide/chemistry , Antibodies/chemistry , Biosensing Techniques/methods , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism
6.
Int J Biol Macromol ; 273(Pt 2): 133180, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38880453

ABSTRACT

Surface chemistry of carriers plays a key role in enzyme loading capacity, structure rigidity, and thus catalyze activity of immobilized enzymes. In this work, the two model enzymes of horseradish peroxidase (HRP) and glucose oxidase (GOx) are co-immobilized on the lysozyme functionalized magnetic core-shell nanocomposites (LYZ@MCSNCs) to enhance their stability and activity. Briefly, the HRP and GOx aggregates are firstly formed under the crosslinker of trimesic acid, in which the loading amount and the rigidity of the enzyme can be further increased. Additionally, LYZ easily forms a robust anti-biofouling nanofilm on the surface of SiO2@Fe3O4 magnetic nanoparticles with abundant functional groups, which facilitate chemical crosslinking of HRP and GOx aggregates with minimized inactivation. The immobilized enzyme of HRP-GOx@LYZ@MCSNCs exhibited excellent recovery activity (95.6 %) higher than that of the free enzyme (HRP&GOx). Specifically, 85 % of relative activity was retained after seven cycles, while 73.5 % of initial activity was also remained after storage for 33 days at 4 °C. The thermal stability and pH adaptability of HRP-GOx@LYZ@MCSNCs were better than those of free enzyme of HRP&GOx. This study provides a mild and ecofriendly strategy for multienzyme co-immobilization based on LYZ functionalized magnetic nanoparticles using HRP and GOx as model enzymes.


Subject(s)
Enzyme Stability , Enzymes, Immobilized , Glucose Oxidase , Horseradish Peroxidase , Magnetite Nanoparticles , Muramidase , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Muramidase/chemistry , Muramidase/metabolism , Magnetite Nanoparticles/chemistry , Glucose Oxidase/chemistry , Glucose Oxidase/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Hydrogen-Ion Concentration , Temperature , Cross-Linking Reagents/chemistry , Protein Aggregates , Silicon Dioxide/chemistry
7.
J Mater Chem B ; 12(26): 6342-6350, 2024 Jul 03.
Article in English | MEDLINE | ID: mdl-38856318

ABSTRACT

The enzyme-linked immunosorbent assay (ELISA) remains the prevailing method for quantifying protein biomarkers. Enzymatic signal generation and amplification are key mechanisms that govern its analytical performance. This study reports the synthesis and application of microscale metal-organic framework (MOF)/enzyme composite particles as a novel detection probe to substantially enhance the sensitivity of ELISA. An optimal one-pot approach was established to incorporate a substantial amount of streptavidin-horseradish peroxidase (SA-HRP) either within or on the surface of the metal-azolate framework (MAF-7) microparticles. This approach enables the labeling of a single sandwich antibody-antigen complex with numerous enzymes, which markedly amplifies the enzymatic colorimetric signal generation. Moreover, MAF-7 caging was found to enhance the reactivity of the caged HRP enzyme, further promoting the overall detection sensitivity of ELISA. Compared to other developments that are often associated with more complicated detection modalities, our method is compatible with standard immunoassays and commonly used photometrical signal detection. The implementation of this strategy in the detection of CD147 results in a remarkably low limit of detection of 2.8 fg mL-1, representing a 105-fold improvement compared to that obtained with the standard ELISA. Moreover, the heightened sensitivity of this technique renders it particularly suitable for diagnosing breast cancer, thus presenting a promising tool for the early detection of the disease in clinical settings.


Subject(s)
Enzyme-Linked Immunosorbent Assay , Extracellular Vesicles , Metal-Organic Frameworks , Metal-Organic Frameworks/chemistry , Humans , Extracellular Vesicles/chemistry , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Particle Size , Surface Properties , Biomarkers, Tumor/analysis , Biomarkers/analysis , Limit of Detection
8.
Anal Chem ; 96(26): 10630-10638, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38912708

ABSTRACT

Paper-based lateral flow immunoassays (LFIAs) are cost-effective, portable, and simple methods for detection of diverse analytes, which however only provide qualitative or semiquantitative results and lack sufficient sensitivity. A combination of LFIA and electrochemical detection, namely, electrochemical lateral flow immunoassay (eLFIA), enables quantitative detection of analytes with high sensitivity, but the integration of external electrodes makes the system relatively expensive and unstable. Herein, the working, counter, and reference electrodes were prepared directly on the nitrocellulose membrane using screen printing, which remarkably simplified the structure of eLFIA and decreased the cost. Moreover, a horseradish peroxidase (HRP)-based electrochemical signal amplification strategy was used for further increasing the analytical sensitivity. HRP captured on the working electrode can catalyze the oxidation of tetramethylbenzidine (TMB) to form the TMB-TMBox precipitate on the electrode surface, which as an electrochemically active product can output an amplified current for quantification. We demonstrated that the eLFIA could detect low-abundant inflammatory biomarkers in human plasma samples with limits of detection of 0.17 and 0.54 pg mL-1 for interleukin-6 and C-reactive protein, respectively. Finally, a fully portable system was fabricated by integrating eLFIA with a flexible and wireless electrochemical workstation, realizing the point-of-care detection of interleukin-6.


Subject(s)
Biomarkers , C-Reactive Protein , Electrochemical Techniques , Electrodes , Interleukin-6 , Humans , Immunoassay/methods , Immunoassay/instrumentation , Electrochemical Techniques/instrumentation , Biomarkers/blood , Biomarkers/analysis , Interleukin-6/blood , Interleukin-6/analysis , C-Reactive Protein/analysis , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Limit of Detection , Inflammation/blood , Inflammation/diagnosis , Benzidines
9.
ACS Appl Mater Interfaces ; 16(26): 33235-33245, 2024 Jul 03.
Article in English | MEDLINE | ID: mdl-38885355

ABSTRACT

Enhancing the stability of multienzyme cascade reactions in metal-organic frameworks (MOFs) is a challenging task in the fields of biotechnology and chemistry. However, addressing this challenge could yield far-reaching benefits across the application range in the biomedical, food, and environmental sectors. In this study, multienzyme partitioning immobilization that sequentially immobilizes cascade enzymes with hierarchical MOFs is proposed to reduce substrate diffusion resistance. Conversion results of ginsenosides indicate that this strategy improves the cascade efficiency up to 1.26 times. The substrate diffusion model is used to investigate the dual-interenzyme mass transfer behavior of substrates in the restricted domain space and evaluate the substrate channeling effect under partitioning immobilization. Molecular docking and kinetic simulations reveal that the MOFs effectively limit the conformational changes of cascade enzymes at high temperatures and in organic solvents while maintaining a large pocket of active centers. This phenomenon increased efficient substrate docking to the enzyme molecules, further optimizing cascade efficiency. The results of the immobilization of GOX and horseradish peroxidase as model enzymes indicate that the partitioned MOF immobilization strategy could be used for universal adaptation of cascade enzymes.


Subject(s)
Enzymes, Immobilized , Horseradish Peroxidase , Metal-Organic Frameworks , Molecular Docking Simulation , Metal-Organic Frameworks/chemistry , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Kinetics , Ginsenosides/chemistry , Ginsenosides/metabolism , Enzyme Stability
10.
J Colloid Interface Sci ; 672: 97-106, 2024 Oct 15.
Article in English | MEDLINE | ID: mdl-38833738

ABSTRACT

Formate is an important environmental pollutant, and meanwhile its concentration change is associated with a variety of diseases. Thus, rapid and sensitive detection of formate is critical for the biochemical analysis of complex samples and clinical diagnosis of multiple diseases. Herein, a colorimetric biosensor was constructed based on the cascade catalysis of formate oxidase (FOx) and horseradish peroxidase (HRP). These two enzymes were co-immobilized in Cu3(PO4)2-based hybrid nanoflower with spatial localization, in which FOx and HRP were located in the shell and core of nanoflower, respectively (FOx@HRP). In this system, FOx could catalyze the oxidation of formate to generate H2O2, which was then utilized by HRP to oxidize 2,2'-azino-bis-3-ethylbenzothiazoline-6-sulphonic acid to yield blue product. Ideal linear correlation could be obtained between the absorbance at 420 nm and formate concentration. Meanwhile, FOx@HRP exhibited excellent detection performance with low limit of detection (6 µM), wide linear detection range (10-900 µM), and favorable specificity, stability and reusability. Moreover, it could be applied in the detection of formate in environmental, food and biological samples with high accuracy. Collectively, FOx@HRP provides a useful strategy for the simple and sensitive detection of formate and is potentially to be used in biochemical analysis and clinical diagnosis.


Subject(s)
Colorimetry , Enzymes, Immobilized , Formates , Horseradish Peroxidase , Colorimetry/methods , Formates/chemistry , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Biosensing Techniques/methods , Limit of Detection , Nanostructures/chemistry , Particle Size , Surface Properties
11.
Langmuir ; 40(27): 13957-13967, 2024 Jul 09.
Article in English | MEDLINE | ID: mdl-38919992

ABSTRACT

The specificity and efficiency of enzyme-mediated reactions have the potential to positively impact many biotechnologies; however, many enzymes are easily degraded. Immobilization on a solid support has recently been explored to improve enzyme stability. This study aims to gain insights and facilitate enzyme adsorption onto gold nanoparticles (AuNPs) to form a stable bioconjugate through the installation of thiol functional groups that alter the protein chemistry. In specific, the model enzyme, horseradish peroxidase (HRP), is thiolated via Traut's reagent to increase the robustness and enzymatic activity of the bioconjugate. This study compares HRP and its thiolated analog (THRP) to deduce the impact of thiolation and AuNP-immobilization on the enzyme activity and stability. HRP, THRP, and their corresponding bioconjugates, HRP-AuNP and THRP-AuNP, were analyzed via UV-vis spectrophotometry, circular dichroism, zeta potential, and enzyme-substrate kinetics assays. Our data show a 5-fold greater adsorption for THRP on the AuNP, in comparison to HRP, that translated to a 5-fold increase in the THRP-AuNP bioconjugate activity. The thiolated and immobilized HRP exhibited a substantial improvement in stability at elevated temperatures (50 °C) and storage times (1 month) relative to the native enzyme in solution. Moreover, HRP, THRP, and their bioconjugates were incubated with trypsin to assess the susceptibility to proteolytic digestion. Our results demonstrate that THRP-AuNP bioconjugates maintain full enzymatic activity after 18 h of incubation with trypsin, whereas free HRP, free THRP, and HRP-AuNP conjugates are rendered inactive by trypsin treatment. These results highlight the potential for protein modification and immobilization to substantially extend enzyme shelf life, resist protease digestion, and enhance biological function to realize enzyme-enabled biotechnologies.


Subject(s)
Enzyme Stability , Enzymes, Immobilized , Gold , Horseradish Peroxidase , Metal Nanoparticles , Sulfhydryl Compounds , Gold/chemistry , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Sulfhydryl Compounds/chemistry , Metal Nanoparticles/chemistry , Proteolysis , Adsorption , Kinetics
12.
Langmuir ; 40(27): 14086-14098, 2024 Jul 09.
Article in English | MEDLINE | ID: mdl-38934738

ABSTRACT

Compared to lipids, block copolymer vesicles are potentially robust nanocontainers for enzymes owing to their enhanced chemical stability, particularly in challenging environments. Herein we report that cis-diol-functional diblock copolymer vesicles can be chemically adsorbed onto a hydrophilic aldehyde-functional polymer brush via acetal bond formation under mild conditions (pH 5.5, 20 °C). Quartz crystal microbalance studies indicated an adsorbed amount, Γ, of 158 mg m-2 for vesicle adsorption onto such brushes, whereas negligible adsorption (Γ = 0.1 mg m-2) was observed for a control experiment conducted using a cis-diol-functionalized brush. Scanning electron microscopy and ellipsometry studies indicated a mean surface coverage of around 30% at the brush surface, which suggests reasonably efficient chemical adsorption. Importantly, such vesicles can be conveniently loaded with a model enzyme (horseradish peroxidase, HRP) using an aqueous polymerization-induced self-assembly formulation. Moreover, the immobilized vesicles remained permeable toward small molecules while retaining their enzyme payload. The enzymatic activity of such HRP-loaded vesicles was demonstrated using a well-established colorimetric assay. In principle, this efficient vesicle-on-brush strategy can be applied to a wide range of enzymes and functional proteins for the design of next-generation immobilized nanoreactors for enzyme-mediated catalysis.


Subject(s)
Aldehydes , Horseradish Peroxidase , Hydrophobic and Hydrophilic Interactions , Polymers , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Aldehydes/chemistry , Polymers/chemistry , Adsorption , Surface Properties , Enzymes, Immobilized/chemistry
13.
Anal Chem ; 96(24): 10064-10073, 2024 Jun 18.
Article in English | MEDLINE | ID: mdl-38842443

ABSTRACT

The global spread of monkeypox has become a worldwide public healthcare issue. Therefore, there is an urgent need for accurate and sensitive detection methods to effectively control its spreading. Herein, we screened by phage display two peptides M4 (sequence: DPCGERICSIAL) and M6 (sequence: SCSSFLCSLKVG) with good affinity and specificity to monkeypox virus (MPXV) B21R protein. To simulate the state of the peptide in the phage and to avoid spatial obstacles of the peptide, GGGSK was added at the C terminus of M4 and named as M4a. Molecular docking shows that peptide M4a and peptide M6 are bound to different epitopes of B21R by hydrogen bonds and salt-bridge interactions, respectively. Then, peptide M4a was selected as the capture probe, phage M6 as the detection probe, and carbonized polymer dots (CPDs) as the fluorescent probe, and a colorimetric and fluorescent double-signal capture peptide/antigen/signal peptide-displayed phage sandwich ELISA triggered by horseradish peroxidase (HRP) through a simple internal filtration effect (IFE) was constructed. HRP catalyzes H2O2 to oxidize 3,3',5,5'-tetramethylbenzidine (TMB) to generate blue oxidized TMB, which can further quench the fluorescence of CPDs through IFE, enabling to detect MPXV B21R in colorimetric and fluorescent modes. The proposed simple immunoassay platform shows good sensitivity and reliability in MPXV B21R detection. The limit of detection for colorimetric and fluorescent modes was 27.8 and 9.14 pg/mL MPXV B21R, respectively. Thus, the established double-peptide sandwich-based dual-signal immunoassay provides guidance for the development of reliable and sensitive antigen detection capable of mutual confirmation, which also has great potential for exploring various analytical strategies for other respiratory virus surveillance.


Subject(s)
Enzyme-Linked Immunosorbent Assay , Peptides , Enzyme-Linked Immunosorbent Assay/methods , Peptides/chemistry , Antigens, Viral/immunology , Antigens, Viral/analysis , Antigens, Viral/chemistry , Molecular Docking Simulation , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Limit of Detection , Fluorescent Dyes/chemistry , Peptide Library , Benzidines/chemistry , Colorimetry/methods
14.
ACS Appl Bio Mater ; 7(5): 3506-3514, 2024 05 20.
Article in English | MEDLINE | ID: mdl-38696441

ABSTRACT

Horseradish peroxidase (HRP)-mediated hydrogelation, caused by the cross-linking of phenolic groups in polymers in the presence of hydrogen peroxide (H2O2), is an effective route for bioink solidification in 3D bioprinting. Sugar beet pectin (SBP) naturally has cross-linkable phenols through the enzymatic reaction. Therefore, chemical modifications are not required, unlike the various polymers that have been used in the enzymatic cross-linking system. In this study, we report the application of SBP in extrusion-based bioprinting including HRP-mediated bioink solidification. In this system, H2O2 necessary for the solidification of inks is supplied in the gas phase. Cell-laden liver lobule-like constructs could be fabricated using bioinks consisting of 10 U/mL HRP, 4.0 and 6.0 w/v% SBP, and 6.0 × 106 cells/mL human hepatoblastoma (HepG2) cells exposed to air containing 16 ppm of H2O2 concurrently during printing and 10 min postprinting. The HepG2 cells enclosed in the printed constructs maintained their viability, metabolic activity, and hepatic functions from day 1 to day 7 of the culture, which indicates the cytocompatibility of this system. Taken together, this result demonstrates the potential of SBP and HRP cross-linking systems for 3D bioprinting, which can be applied in tissue engineering applications.


Subject(s)
Beta vulgaris , Biocompatible Materials , Bioprinting , Horseradish Peroxidase , Materials Testing , Pectins , Printing, Three-Dimensional , Horseradish Peroxidase/metabolism , Horseradish Peroxidase/chemistry , Beta vulgaris/chemistry , Humans , Pectins/chemistry , Hep G2 Cells , Biocompatible Materials/chemistry , Biocompatible Materials/pharmacology , Biocompatible Materials/chemical synthesis , Hydrogen Peroxide/chemistry , Particle Size , Cell Survival/drug effects , Cross-Linking Reagents/chemistry , Cross-Linking Reagents/chemical synthesis , Tissue Engineering
15.
J Am Chem Soc ; 146(19): 13247-13257, 2024 May 15.
Article in English | MEDLINE | ID: mdl-38701006

ABSTRACT

Horseradish peroxidase (HRP) is an enzyme that oxidizes pollutants from wastewater. A previous report indicated that peroxidases can have an enhancement in initial enzymatic activity in an aqueous solution of 0.26 M 1-ethyl-3-methylimidazolium ethyl sulfate ([EMIm][EtSO4]) at neutral pH. However, the atomistic details remain elusive. In the enzymatic landscape of HRP, compound II (Cpd II) plays a key role and involves a histidine (H42) residue. Cpd II exists as oxoferryl (2a) or hydroxoferryl (2b(FeIV)) forms, where 2a is the predominantly observed form in experimental studies. Intriguingly, the ferric 2b(FeIII) form seen in synthetic complexes has not been observed in HRP. Here, we have investigated the structure and dynamics of HRP in pure water and aqueous [EMIm][EtSO4] (0.26 M), as well as the reaction mechanism of 2a to 2b conversion using polarizable molecular dynamics (MD) simulations and quantum mechanics/molecular mechanics (QM/MM) calculations. When HRP is solvated in aq [EMIm][EtSO4], the catalytic water displaces, and H42 directly orients over the ferryl moiety, allowing a direct proton transfer (PT) with a significant energy barrier reduction. Conversely, in neat water, the reaction of 2a to 2b follows the previously reported mechanism. We further investigated the deprotonated form of H42. Analysis of the electric fields at the active site indicates that the aq [EMIm][EtSO4] medium facilitates the reaction by providing a more favorable environment compared with the system solvated in neat water. Overall, the atomic level supports the previous experimental observations and underscores the importance of favorable electric fields in the active site to promote catalysis.


Subject(s)
Horseradish Peroxidase , Ionic Liquids , Molecular Dynamics Simulation , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Ionic Liquids/chemistry , Imidazoles/chemistry , Quantum Theory , Solutions , Water/chemistry
16.
Biomacromolecules ; 25(6): 3620-3627, 2024 Jun 10.
Article in English | MEDLINE | ID: mdl-38806062

ABSTRACT

Lignin is an aromatic polymer that constitutes plant cell walls. The polymerization of lignin proceeds by radical coupling, and this process requires radicalization of the phenolic end of lignin by enzymes. However, due to the steric hindrance between enzymes, lignin, and polysaccharides, the direct oxidation of the phenolic end of lignin by the enzyme would be difficult, and the details of the growth of lignin are still unknown. In this study, enzymatic dehydrogenative polymerization experiments were conducted using coniferyl alcohol (CA) and the deuterium-labeled lignin model compound (D-LM) under a noncontact condition in which horseradish peroxidase cannot directly oxidize D-LM due to separation by a dialysis membrane. Analysis of deuterium-labeled degraded compounds obtained by a combination of methylation and thioacidolysis revealed the formation of the bond between the phenolic end of D-LM and CA, suggesting that membrane-permeable, low-molecular-weight lignols functioned as a redox shuttle mediator.


Subject(s)
Lignin , Oxidation-Reduction , Polymerization , Lignin/chemistry , Lignin/metabolism , Phenols/chemistry , Phenols/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Molecular Weight , Phenylpropionates/chemistry , Phenylpropionates/metabolism
17.
Biomacromolecules ; 25(5): 3055-3062, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38693874

ABSTRACT

Polymersomes, nanosized polymeric vesicles, have attracted significant interest in the areas of artificial cells and nanomedicine. Given their size, their visualization via confocal microscopy techniques is often achieved through the physical incorporation of fluorescent dyes, which however present challenges due to potential leaching. A promising alternative is the incorporation of molecules with aggregation-induced emission (AIE) behavior that are capable of fluorescing exclusively in their assembled state. Here, we report on the use of AIE polymersomes as artificial organelles, which are capable of undertaking enzymatic reactions in vitro. The ability of our polymersome-based artificial organelles to provide additional functionality to living cells was evaluated by encapsulating catalytic enzymes such as a combination of glucose oxidase/horseradish peroxidase (GOx/HRP) or ß-galactosidase (ß-gal). Via the additional incorporation of a pyridinium functionality, not only the cellular uptake is improved at low concentrations but also our platform's potential to specifically target mitochondria expands.


Subject(s)
Glucose Oxidase , Horseradish Peroxidase , beta-Galactosidase , Glucose Oxidase/chemistry , Humans , beta-Galactosidase/chemistry , beta-Galactosidase/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Organelles/metabolism , Fluorescent Dyes/chemistry , Polymers/chemistry , Fluorescence , HeLa Cells , Mitochondria/metabolism
18.
Sci Rep ; 14(1): 11442, 2024 05 20.
Article in English | MEDLINE | ID: mdl-38769440

ABSTRACT

The global supply of fluoropolymers and fluorinated solvents is decreasing due to environmental concerns regarding polyfluoroalkyl substances. CYTOP has been used for decades primarily as a component of a femtoliter chamber array for digital bioanalysis; however, its supply has recently become scarce, increasing the urgency of fabricating a femtoliter chamber array using alternative materials. In this study, we investigated the feasibility of fabricating a femtoliter chamber array using four types of fluoropolymers in stable supply as candidate substitutes and verified their applicability for digital bioanalysis. Among these candidates, Fluorine Sealant emerged as a viable option for fabricating femtoliter chamber arrays using a conventional photolithography process. To validate its efficacy, we performed various digital bioanalysis using FP-A-based chamber arrays with model enzymes such as CRISPR-Cas, horseradish peroxidase, and ß-galactosidase. The results demonstrated the similar performance to that of CYTOP, highlighting the broader utility of FP-A in digital bioanalysis. Our findings underscore the potential of FP-A to enhance the versatility of digital bioanalysis and foster the ongoing advancement of innovative diagnostic technologies.


Subject(s)
Polymers , Polymers/chemistry , Horseradish Peroxidase/metabolism , Horseradish Peroxidase/chemistry , beta-Galactosidase/metabolism
19.
Small ; 20(23): e2309075, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38597772

ABSTRACT

The improper use and overuse of antibiotics have led to significant burdens and detrimental effects on the environment, food supply, and human health. Herein, a magnetic solid-phase extraction program and an optical immunosensor based on bimetallic Ce/Zr-UiO 66 for the detection of antibiotics are developed. A magnetic Fe3O4@SiO2@Ce/Zr-UiO 66 metal-organic framework (MOF) is prepared to extract and enrich chloramphenicol from fish, wastewater, and urine samples, and a horseradish peroxidase (HRP)-Ce/Zr-UiO 66@bovine serum protein-chloramphenicol probe is used for the sensitive detection of chloramphenicol based on the dual-effect catalysis of Ce and HRP. In this manner, the application of Ce/Zr-UiO 66 in integrating sample pretreatment and antibiotic detection is systematically investigated and the associated mechanisms are explored. It is concluded that Ce/Zr-UiO 66 is a versatile dual-track material exhibiting high enrichment efficiency (6.37 mg g-1) and high sensitivity (limit of detection of 51.3 pg mL-1) for chloramphenicol detection and serving as a multifunctional MOF for safeguarding public health and hygiene.


Subject(s)
Anti-Bacterial Agents , Chloramphenicol , Metal-Organic Frameworks , Metal-Organic Frameworks/chemistry , Chloramphenicol/analysis , Animals , Humans , Silicon Dioxide/chemistry , Cerium/chemistry , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism
20.
Anal Sci ; 40(5): 951-958, 2024 May.
Article in English | MEDLINE | ID: mdl-38598048

ABSTRACT

Daily monitoring of serum uric acid levels is very important to provide appropriate treatment according to the constitution and lifestyle of individual hyperuricemic patients. We have developed a suspension-based assay to measure uric acid by adding a sample solution to the suspension containing micro-sized particles immobilized on uricase and horseradish peroxidase (HRP). In the proposed method, the mediator reaction of uricase, HRP, and uric acid produces resorufin from Amplex red. This resorufin is adsorbed onto enzyme-immobilized micro-sized particles simultaneously with its production, resulting in the red color of the micro-sized particles. The concentration of resorufin on the small surface area of the microscopic particles achieves a colorimetric analysis of uric acid with superior visibility. In addition, ethanol-induced desorption of resorufin allowed quantitative measurement of uric acid using a 96-well fluorescent microplate reader. The limit of detection (3σ) and RSD (n = 3) were estimated to be 2.2 × 10-2 µg/mL and ≤ 12.1%, respectively. This approach could also be applied to a portable fluorometer.


Subject(s)
Colorimetry , Enzymes, Immobilized , Fluorometry , Horseradish Peroxidase , Urate Oxidase , Uric Acid , Uric Acid/blood , Uric Acid/chemistry , Uric Acid/analysis , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Urate Oxidase/chemistry , Urate Oxidase/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Particle Size , Humans , Suspensions , Oxazines/chemistry
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