Involvement of laccase-like enzymes in humic substance degradation by diverse polar soil bacteria.

Humic substances (HS) in soil are widely distributed in cold environments and account for a significant fraction of soil's organic carbon. Bacterial strains (n = 281) were isolated at 15 °C using medium containing humic acids (HA), a principal component of HS, from a variety of polar soil samples: 217 from the Antarctic and 64 from the Arctic. We identified 73 potential HA-degrading bacteria based on 16S rRNA sequence similarity, and these sequences were affiliated with phyla Proteobacteria (73.9%), Actinobacteria (20.5%), and Bacteroidetes (5.5%). HA-degrading strains were further classified into the genera Pseudomonas (51 strains), Rhodococcus (10 strains), or others (12 strains). Most strains degraded HA between 10 and 25 °C, but not above 30 °C, indicating cold-adapted degradation. Thirty unique laccase-like multicopper oxidase (LMCO) gene fragments were PCR-amplified from 71% of the 73 HA-degrading bacterial strains, all of which included conserved copper-binding regions (CBR) I and II, both essential for laccase activity. Bacterial LMCO sequences differed from known fungal laccases; for example, a cysteine residue between CBR I and CBR II in fungal laccases was not detected in bacterial LMCOs. This suggests a bacterial biomarker role for LMCO to predict changes in HS-degradation rates in tundra regions as global climate changes. Computer-aided molecular modeling showed these LMCOs contain a highly-conserved copper-dependent active site formed by three histidine residues between CBR I and CBR II. Phylogenetic- and modeling-based methods confirmed the wide occurrence of LMCO genes in HA-degrading polar soil bacteria and linked their putative gene functions with initial HS-degradation processes.

Effects of Microbes from Coal-Related Commercial Humic Substances on Hydroponic Crop Cultivation: A Microbiological View for Agronomical Use of Humic Substances.

Here, coal-related humic substances (HSs) were examined to confirm whether sterilization treatments induce their inferior ability to stimulate lettuce in hydroponic cultivations. Interestingly, a drastic reduction in both lettuce biomass and microbial colony-forming units of the crop culture solutions was observed when the autoclaved HSs were treated. Some microbial genera (i.e., Bacillus and Aspergillus) identifiable in the bare HS-treated hydroponic systems were able to be isolated by direct inoculation of bare HS powders on conventional microbial nutrients, supporting that flourishing microbes in the hydroponic cultivations derive from bare HSs-treated. Moreover, coincubation of some isolated bacterial and fungal strains (i.e., Bacillus and Aspergillus genera) from HSs with lettuce resulted in a significant increase in plant biomass and enhanced resistance to NaCl-related abiotic stresses. Microbial volatile organic compounds renowned for plant stimulation were detected by using solid-phase microextraction coupled with gas chromatography-mass spectrometry. It was finally confirmed that the isolates are capable of utilizing carbon substrates such as pectin and tween 20 or 40, which are relevant to those of microbes isolated from peat and leonardite (i.e., HS extraction sources). Overall, our results suggest that microbiological factors could be considered when commercial coal-related HSs are applied in hydroponic crop cultivations.

Removing organic matters from reverse osmosis concentrate using advanced oxidation-biological activated carbon process combined with Fe3+/humus-reducing bacteria.

The high-concentration wastewater produced in the industrial reverse osmosis (RO) process contains a large amount of refractory organic matters, which will have serious impacts on the natural environment and human health. Among them, contaminants can be transformed by humus-reducing bacteria based on humus. In this study, O3- assisted UV-Fenton method was applied as pretreatment. Biological activated carbon (BAC) technology in which humus-reducing bacteria were the dominant bacteria, enhanced by electron donor and Fe3+, was used to dispose of RO concentrate (ROC). The results showed that water treatment process combining oxidation with biological filtration had a positive effect on the removal of stubborn contaminants in ROC. The system was strengthened by adding electron donor and Fe3+, and the chemical oxygen demand (COD) removal efficiency was up to 80.1%. However, when the removal efficiency of UV254 absorbing pollutants reached optimal value (87.3%), that means only Fe3+ was added.

Early detection of viable Francisella tularensis in environmental matrices by culture-based PCR.

BACKGROUND: Francisella tularensis is a fastidious, Gram-negative coccobacillus and is the causative agent of tularemia. To assess viability yet overcome lengthy incubation periods, a culture-based PCR method was used to detect early growth of the lowest possible number of F. tularensis cells. This method utilized a previously developed enhanced F. tularensis growth medium and is based on the change in PCR cycle threshold at the start and end of each incubation. RESULTS: To test method robustness, a virulent Type A1 (Schu4) and B (IN99) strain and the avirulent Live Vaccine Strain (LVS) were incubated with inactivated target cells, humic acid, drinking and well water, and test dust at targeted starting concentrations of 1, 10, and 100 CFU mL- 1 (low, mid, and high, respectively). After 48 h, LVS growth was detected at all targeted concentrations in the presence of 106 inactivated LVS cells; while Schu4 and IN99 growth was detected in the presence of 104 Schu4 or IN99 inactivated cells at the mid and high targets. Early detection of F. tularensis growth was strain and concentration dependent in the presence of fast-growing well water and test dust organisms. In contrast, growth was detected at each targeted concentration by 24 h in humic acid and drinking water for all strains. CONCLUSIONS: Results indicated that the culture-based PCR assay is quick, sensitive, and specific while still utilizing growth as a measure of pathogen viability. This method can circumvent lengthy incubations required for Francisella identification, especially when swift answers are needed during epidemiological investigations, remediation efforts, and decontamination verification.

Kinetic Study of the Biodegradation of Acephate by Indigenous Soil Bacterial Isolates in the Presence of Humic Acid and Metal Ions.

Many bacteria have the potential to use specific pesticides as a source of carbon, phosphorous, nitrogen and sulphur. Acephate degradation by microbes is considered to be a safe and effective method. The overall aim of the present study was to identify acephate biodegrading microorganisms and to investigate the degradation rates of acephate under the stress of humic acid and most common metal ions Fe(III) and copper Cu(II). Pseudomonas azotoformanss strain ACP1, Pseudomonas aeruginosa strain ACP2, and Pseudomonas putida ACP3 were isolated from acephate contaminated soils. Acephate of concentration 100 ppm was incubated with separate strain inoculums and periodic samples were drawn for UV-visible, FTIR (Fourier-transform infrared spectroscopy) and MS (Mass Spectrometry) analysis. Methamidophos, S-methyl O-hydrogen phosphorothioamidate, phosphenothioic S-acid, and phosphenamide were the major metabolites formed during the degradation of acephate. The rate of degradation was applied using pseudo-first-order kinetics to calculate the half-life (t1/2) values, which were 14.33-16.72 d-1 (strain(s) + acephate), 18.81-21.50 d-1 (strain(s) + acephate + Cu(II)), 20.06 -23.15 d-1 (strain(s) + acephate + Fe(II)), and 15.05-17.70 d-1 (strains + acephate + HA). The biodegradation efficiency of the three bacterial strains can be ordered as P. aeruginosa > P. putida > P. azotoformans. The present study illustrated the decomposition mechanism of acephate under different conditions, and the same may be applied to the removal of other xenobiotic compounds.

Zn2+-assisted photothermal therapy for rapid bacteria-killing using biodegradable humic acid encapsulated MOFs.

Bacterial infection is seriously threatening human health all over the world, especially with the emergence of increasing drug-fast bacteria. It is urgent to develop a drug-free strategy to kill bacteria rapidly and efficiently. In this work, humic acid (HuA) encapsulated zeolitic imidazole framework-8 (ZIF-8) (HuA@ZIF-8) nanocomposites are synthesized by the in-situ growth of ZIF-8 on the surface of polyvinylpyrrolidone (PVP)-modified HuA. The synthesized nanocomposites possesses good photothermal effects, i.e., the temperature increased to 59.4 °C under the particle concentration of 1000 µg/mL with 10 min NIR irradiation. In addition, NIR irradiation can also control the release of Zn2+ from the composites. The good photothermal effects originate from HuA that can effectively absorb NIR light. The controlled release of Zn2+ is ascribed to the induced-dissociation of ZIF-8 under NIR light irradiation. The synergistic action of photothermal therapy and release of zinc ions contributes to the excellent antibacterial efficiency of HuA@ZIF-8 within a short time, i.e. 99.59 % and 99.37 % against Staphylococcus aureus and Escherichia coli with 20 min NIR irradiation, respectively. This work provides a promising strategy to develop a light-responsive platform with good biodegradability and low cost for rapid and effective sterilization.

New insight into the impact of biochar during vermi-stabilization of divergent biowastes: Literature synthesis and research pursuits.

Biochar amendment for compost stabilization of divergent biowastes is gaining considerable attention due to environmental, agronomic and economic benefits. Research to date exhibits its favorable physico-chemical characteristics, viz. greater porosity, surface area, amount of functional groups, and cation exchange capacity (CEC), which allow interface with main nutrient cycles, favor microbial activities during composting, and improve the reproduction of earthworms during vermicomposting. Biochar amendment during composting and vermicomposting of biowastes boosts physico-chemical properties of compost mixture, microbial activities and organic matter degradation; and reduces nitrogen loss and emission of greenhouse gases (GHGs). It also improves the quality of final compost by increasing concentration of plant available nutrients, enhancing maturity, decreasing composting duration and reducing the toxicity of compost. Due to these characteristics, biochar could be considered a beneficial additive for the stabilization of different biowastes during composting and vermicomposting processes. Hence, good quality vermicompost, efficient recycling and management of biowastes could be achieved by addition of biochar through composting and vermicomposting.

Recovery of efficient treatment performance in a semi-aerobic aged refuse biofilter when treating landfill leachate: Washing action using domestic sewage.

Semi-aerobic aged refuse biofilters (SAARB) are known to efficiently remove organic matter, nitrogenous substances, and anions from landfill leachate. However, long-term recirculation of mature landfill leachate inevitably leads to accumulation of pollutants and decreases treatment capacity. In this study, the washing action provided by domestic sewage was used to recover and even enhance the treatment performance of SAARBs treating mature landfill leachate. Three SAARB columns were operated for 300 d after which a "Recirculation-Washing-Recirculation" sequence was followed. In the first recirculation period (22 d), removal of chemical oxygen demand (COD) and total nitrogen (TN) decreased from ca. 90% and 60%, respectively, initially to about 75% and less than 20%, respectively. Thereafter, washing (20 d) of the SAARBs was accomplished by applying domestic sewage. In the subsequent second recirculation period (30 d), the SAARBs were operated at the same hydraulic loading as used initially, but achieved high (ca. 90%) COD and relatively high (ca. 59%-76%) TN removal, including degradation of refractory organic matter such as humic- and fulvic-like substances. Overall, the mechanisms of the treatment performance recovery (including organics degradation and nitrification-denitrification) using domestic sewage can be attributed to three main effects: (1) some accumulated pollutants were washed out, thereby leading to recovery of the adsorption ability of aged refuse; (2) the inhibition of bio-refractory organics stress on microbial activities was mitigated by domestic sewage washing; and (3) the wash out of some accumulated salts (e.g., chloride and sulfate ions) probably helped the microbial activity recover.

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid.

Two slightly beige-pigmented, Gram-stain-negative, rod-shaped bacterial strains, IMT-291T and IMT-297, were isolated from soil in a field located in Malvern, Alabama, USA. The source soil had been amended with humic acid and continuously used for the cultivation of worms used for fish bait. It is still conceivable that the source of the strains is from the humic acid amendment, although all attempts to isolate the novel phenotypes from the humic acid source have failed. The two strains were identical based on morphology, growth rate and subsequently by 16S rRNA gene sequences, but showed differences in genomic fingerprint patterns generated by rep-PCR. Phylogenetic analysis based on the 16S rRNA gene revealed a placement of the strain in a distinct cluster with Xinfangfangia soli (97.2 % 16S rRNA gene sequence similarity) and in close proximity to the genus Falsirhodobacter with highest 16S rRNA gene sequence similarity of 95.3 % to the type strain of Falsirhodobacter deserti. Sequence similarities to all other type strains were below 95.0 %. The chemotaxonomic analysis showed a clear similarity to the genus Xinfangfangia. The main cellular fatty acids of the strain were C18 : 1 ω7c, 11-methly-C18 : 1 ω7c and C16 : 0. The major quinone was ubiquinone Q-10. Phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol and phosphatidylcholine were predominant in the polar lipid profile. The polyamine pattern contained the major compound spermidine and moderate amounts of putrescine and cadaverine. The diamino acid of the peptidoglycan was meso-diaminopimelic acid. Based on phylogenetic, chemotaxonomic and phenotypic analyses we propose a new species of the genus Xinfangfangia, with the name Xinfangfangiahumi sp. nov. and strain IMT-291T (=LMG 30636T=CIP 111625T=CCM 8858T) as type strain.

Microbial Organic Matter Utilization in High-Arctic Streams: Key Enzymatic Controls.

In the Arctic, climate changes contribute to enhanced mobilization of organic matter in streams. Microbial extracellular enzymes are important mediators of stream organic matter processing, but limited information is available on enzyme processes in this remote area. Here, we studied the variability of microbial extracellular enzyme activity in high-Arctic fluvial biofilms. We evaluated 12 stream reaches in Northeast Greenland draining areas exhibiting different geomorphological features with contrasting contents of soil organic matter to cover a wide range of environmental conditions. We determined stream nitrogen, phosphorus, and dissolved organic carbon concentrations, quantified algal biomass and bacterial density, and characterized the extracellular enzyme activities involved in catalyzing the cleavage of a range of organic matter compounds (e.g., ß-glucosidase, phosphatase, ß-xylosidase, cellobiohydrolase, and phenol oxidase). We found significant differences in microbial organic matter utilization among the study streams draining contrasting geomorphological features, indicating a strong coupling between terrestrial and stream ecosystems. Phosphatase and phenol oxidase activities were higher in solifluction areas than in alluvial areas. Besides dissolved organic carbon, nitrogen availability was the main driver controlling enzyme activities in the high-Arctic, which suggests enhanced organic matter mineralization at increased nutrient availability. Overall, our study provides novel information on the controls of organic matter usage by high-Arctic stream biofilms, which is of high relevance due to the predicted increase of nutrient availability in high-Arctic streams in global climate change scenarios.

Microbially reduced humic acid promotes the anaerobic photodegradation of 17α--ethinylestradiol.

Photolysis and microbial activity are relatively obvious in shallow, eutrophic waters with low dissolved oxygen content. Ubiquitous humic acid (HA) can act as electron acceptor and be reduced by bacterial under such conditions, and the reduced form of humic acid (RHA) plays an important role in the photolysis contaminants. In this study, anaerobic 17α-ethinylestradiol (EE2) photodegradation was performed along with biodegradation by Shewanella putrefaciens mediated by HA. The mechanism of such coupled photolysis and biodegradation of EE2 was thus elucidated. The removal rate in such coupled degradation in the presence of 10 mgC L-1 of HA at pH 8.0 was greater than that of either photolysis or biodegradation alone. HA which had been reduced in a double-chamber microbial fuel cell showed better promotion to EE2 photodegradation than fresh HA. Reactive species scavenging experiments indicated that hydroxyl radical and excited triplet states of HA were primary contributors to EE2 photodegradation in anaerobic conditions. More of them were produced from RHA than from pristine HA. Besides, the degraded EE2 solutions inhibited the proliferation of MCF-7 human cancer Cells. These findings improve our understanding of the environmental transformation of EE2 in the shallow, anoxic waters.

The Role of Lignocellulosic Composition and Residual Lipids in Empty Fruit Bunches on the Production of Humic Acids in Submerged Fermentations.

The aim of this research was to study the production of humic acids (HA) by Trichoderma reesei from empty fruit bunches (EFBs) of palm oil processing, with a focus on the effects of lignocellulosic content and residual lipids. EFBs from two different soils and palm oil producers were previously characterized about their lignocellulosic composition. Submerged fermentations were inoculated with T. reesei spores and set up with or without residual lipids. The results showed that the soil and the processing for removal of the palm fresh fruits were crucial to EFB quality. Thus, EFBs were classified as type 1 (higher lignocellulosic and fatty acids composition similar to the palm oil and palm kernel oil) and type 2 (lower lignocellulosic content and fatty acids composition similar to palm oil). Despite the different profiles, the fungal growth was similar for both EFB types. HA production was associated with fungal growth, and it was higher without lipids for both EFBs. The highest HA productivity was obtained from type 1 EFB (approximately 90 mg L-1 at 48 h). Therefore, the lignocellulosic composition and the nature of the residual lipids in EFBs play an important role in HA production by submerged fermentation.

Effects of organic matter and low oxygen on the mycobenthos in a coastal lagoon.

Fungi living in sediments ('mycobenthos') are hypothesized to play a role in the degradation of organic matter deposited at the land-sea interface, but the environmental factors influencing the mycobenthos are poorly understood. We used mock community calibrated Illumina sequencing to show that the mycobenthos community structure in a coastal lagoon was significantly changed after exposure to a lignocellulose extract and subsequent development of benthic anoxia over a relatively short (10 h) incubation. Saprotrophic taxa dominated and were selected for under benthic anoxia, specifically Aquamyces (Chytridiomycota) and Orbilia (Ascomycota), implicating these genera as important benthic saprotrophs. Protein encoding genes involved in energy and biomass production from Fungi and the fungal-analogue group Labyrinthulomycetes had the highest increase in expression with the added organic matter compared with all other groups, indicating that lignocellulose stimulates metabolic activity in the mycobenthos. Flavobacteria dominated the active bacterial community that grew rapidly with the lignocellulose extract and crashed sharply upon O2 depletion. Our findings indicate that the diversity, activity and trophic potential of the mycobenthos changes rapidly in response to organic matter and decreasing O2 concentrations, which together with heterotrophic Flavobacteria, undergo 'boom and bust' dynamics during lignocellulose degradation in estuarine ecosystems.

Insight into transformation of dissolved organic matter in the Heilongjiang River.

Heilongjiang is a "browning" river that receives substantial terrestrial organic matter, where reactivity of dissolved organic matter (DOM) may have important effect on ecosystem function and carbon biogeochemical cycle. However, little is known about microbial transformations of different DOM components, which could provide valuable insight into biogeochemical reactivity of DOM. In this study, bioavailability experiments were conducted for 55 days to determine changes of different DOM components by microbial transformations. Labile matter (C1) was detected only in initial DOM, and tryptophan-like substances (C4) were observed from day 5 onwards. Thus, three individual components were identified at each sampling time of the bioavailability experiment. The increase of Fmax in DOM components revealed that microbial humic-like substances (C2), terrestrial humic-like substances (C3), and C4 were produced by microbial transformation, especially in the spring samples. Further, two-dimensional correlation spectroscopy (2D-COS) indicated that shorter wavelength tryptophan-like and microbial humic-like substances can be degraded by microbes or transformed into longer wavelength complex substances. Relatively simple microbial humic-like substances were preferentially produced compared to complex terrestrial humic-like substances. The results make sense to understand the biogeochemical cycling and environmental effects of DOM in the Heilongjiang River.

Humic substances, their microbial interactions and effects on biological transformations of organic pollutants in water and soil: A review.

Depicted as large polymers by the traditional model, humic substances (HS) tend to be considered resistant to biodegradation. However, HS should be regarded as supramolecular associations of rather small molecules. There is evidence that they can be degraded not only by aerobic but also by anaerobic bacteria. HS presence alters biological transformations of organic pollutants in water and soil. HS, including humin, have a great potential for an application in aerobic and anaerobic wastewater treatment as well as in bioremediation. Black carbon materials, including char (biochar) and activated carbon (AC), long recognized effective sorbents, have been recently discovered to act as effective redox mediators (RM), which may significantly accelerate degradation of organic pollutants in a way similar to HS. Humic-like coating on the biochar surface has been identified. Explanation of mechanisms and possibility of applications of black carbon materials have only started to be explored. Results of many original and review papers, presented and discussed in this article, show an enormous potential for an interesting, multidisciplinary research as well as for a development of new, green technologies for biological wastewater treatment and bioremediation. Future research areas have been suggested.

Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation.

Although humic acids (HA) are involved in many biological processes in soils and thus their ecological importance has received much attention, the degradative pathways and corresponding catalytic genes underlying the HA degradation by bacteria remain unclear. To unveil those uncertainties, we analyzed transcriptomes extracted from Pseudomonas sp. PAMC 26793 cells time-dependently induced in the presence of HA in a lab flask. Out of 6288 genes, 299 (microarray) and 585 (RNA-seq) were up-regulated by > 2.0-fold in HA-induced cells, compared with controls. A significant portion (9.7% in microarray and 24.1% in RNA-seq) of these genes are predicted to function in the transport and metabolism of small molecule compounds, which could result from microbial HA degradation. To further identify lignin (a surrogate for HA)-degradative genes, 6288 protein sequences were analyzed against carbohydrate-active enzyme database and a self-curated list of putative lignin degradative genes. Out of 19 genes predicted to function in lignin degradation, several genes encoding laccase, dye-decolorizing peroxidase, vanillate O-demethylase oxygenase and reductase, and biphenyl 2,3-dioxygenase were up-regulated > 2.0-fold in RNA-seq. This induction was further confirmed by qRT-PCR, validating the likely involvement of these genes in the degradation of HA.

Compost biofortification with diazotrophic and P-solubilizing bacteria improves maturation process and P availability.

BACKGROUND: Phosphorus-containing fertilizers play an important role in tropical agriculture owing to the well documented shortage of plant-available P in soils. Traditional P fertilizer production is based on chemical processing of insoluble rock phosphate (RP), which includes an acid treatment at high temperature. Processing the RP increases fertilizer costs, making it unavailable for undercapitalized and typically family-based farmers. Biotechnological methods have been proposed as an alternative to increase phosphate availability in RP. In this study, Burkholderia silvatlantica and Herbaspirillum seropedicae were co-inoculated into an RP-enriched compost with the aim of determining the effects of this technology on the levels of phosphatase activities and release of plant-available P. RESULTS: Inoculation of both microorganisms resulted in higher organic matter decomposition and higher humic acid formation in composting. Herbaspirillum seropedicae was the most promising microorganism for the production of acid and alkaline phosphatase enzymes. Both microorganisms presented potential to increase the supply of P from poorly soluble sources owing to increased levels of water-soluble P and citric acid P. CONCLUSION: Burkholderia silvatlantica and H. seropedicae in RP-enriched compost may represent an important biotechnological tool to reduce the overall time required for composting and increase the supply of P from poorly soluble sources. © 2016 Society of Chemical Industry.

Springtime precipitation effects on the abundance of fluorescent biological aerosol particles and HULIS in Beijing.

Bioaerosols and humic-like substances (HULIS) are important components of atmospheric aerosols, which can affect regional climate by acting as cloud condensation nuclei and some of which can damage human health. Up to date, release of bioaerosols and HULIS initiated by precipitation is still poorly understood. Here we present different release processes for bioaerosols, non-bioaerosols and HULIS during a precipitation event in Beijing, China. Large fungal-spore-like aerosols were emitted at the onset and later weak stage of precipitation, the number concentration of which increased by more than two folds, while the number concentration of bacteria-like particles doubled when the precipitation strengthened. Besides, a good correlation between protein-like substances that were measured simultaneously by on-line and off-line fluorescence techniques consolidated their applications to measure bioaerosols. Furthermore, our EEM results suggest that the relative contribution of water-soluble HULIS to microbial materials was enhanced gradually by the rain event.

Changes in dissolved organic matter composition and metabolic diversity of bacterial community during the degradation of organic matter in swine effluent.

In this study, an incubation experiment was conducted with effluent collected from the concentrated swine-feeding operations (CSFOs) located in Yujiang County of Jiangxi Province, China. The purpose of this study was to elucidate the relationships between the composition of dissolved organic matter (DOM) and the community-level physiological profiles (CLPPs) of microorganisms in swine effluent. For all samples examined, the concentrations of dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) were decreased by an average of 58.2 ± 30.4 and 49.2 ± 38.7 %, whereas total dissolved phosphorus (TDP) exhibited an average final accumulation of 141.5 ± 43.0 %. In the original samples, ammonium nitrogen accounted for 88.9 ± 4.9 % of the TDN, which was reduced to a final average of 83.9 ± 9.6 %. Two protein-like (tyrosine and tryptophan) and two humic-like (fulvic acids and humic acids) components were identified using a three-dimensional excitation-emission matrix. With the increase in incubation time, the relative concentrations of two protein-like components in effluent were reduced by an average of 83.2 ± 24.7 %. BIOLOG(™) ECO plates were used to determine the metabolic fingerprint of the bacterial community, and a shift in the utilization patterns of substrates was observed over the study period. Additionally, the Shannon-Wiener index of CLPP was ultimately reduced by an average of 43.5 ± 8.5 %, corresponding to the metabolic diversity of the bacterial community. The redundancy analysis identified significant relationships between environmental parameters and the CLPP of microorganisms. To a certain degree, the DOM compositions were linked with the substrate utilization patterns of the bacterial community during the degradation of organic matter in swine effluent.

Plant tolerance to mercury in a contaminated soil is enhanced by the combined effects of humic matter addition and inoculation with arbuscular mycorrhizal fungi.

In a greenhouse pot experiment, lettuce plants (Lactuca sativa L.) were grown in a Hg-contaminated sandy soil with and without inoculation with arbuscular mycorrhizal fungi (AMF) (a commercial inoculum containing infective propagules of Rhizophagus irregularis and Funneliformis mosseae) amended with different rates of a humic acid (0, 1, and 2 g kg(-1) of soil), with the objective of verifying the synergistic effects of the two soil treatments on the Hg tolerance of lettuce plants. Our results indicated that the plant biomass was significantly increased by the combined effect of AMF and humic acid treatments. Addition of humic matter to soil boosted the AMF effect on improving the nutritional plant status, enhancing the pigment content in plant leaves, and inhibiting both Hg uptake and Hg translocation from the roots to the shoots. This was attributed not only to the Hg immobilization by stable complexes with HA and with extraradical mycorrhizal mycelium in soil and root surfaces but also to an improved mineral nutrition promoted by AMF. This work indicates that the combined use of AMF and humic acids may become a useful practice in Hg-contaminated soils to reduce Hg toxicity to crops.