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1.
Theory Biosci ; 143(2): 131-151, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38671311

ABSTRACT

The present study provides new insight into the key aspects of the early formative period of the ecosystem concept in aquatic ecology. Raymond Lindeman's trophodynamics is known to be a starting point for the development of the modern concept of ecosystem. The trophodynamic approach in ecology was proposed by Lindeman in his widely cited paper of 1942. Lindeman's views are analyzed in comparison with the contemporary production studies in aquatic ecology. It is shown that a similar theoretical system has been proposed in the USSR at the end of the 1930s by Georgiy G. Vinberg. He introduced the concept of biotic balance based on the wide appraisal of the dark and light bottles method. The study shows that both Lindeman's trophodynamics and Vinberg's concept of biotic balance relied on an energy-based approach in considering the wholeness of a water body. The two scientists, however, differed in several important aspects concerning the interpretation of the role of living organisms. The holistic interpretation of ecosystem by Lindeman and Vinberg can be seen as part of the dilemma between physicalism and organicism. At the same time, the main emphasis in the concepts of both Vinberg and Lindemann was on the primary production component, a feature that was common to the first holistic systems in production hydrobiology (e.g., E. Naumann's regional limnology). It is clear that modern problems of aquatic ecology should be addressed from the perspective of the organismocentric understanding of the ecosystem, but undoubtedly at the new level of development of this view.


Subject(s)
Ecology , Ecosystem , Lakes , Animals , History, 20th Century , Hydrobiology/methods , Aquatic Organisms , Models, Biological
2.
Yakugaku Zasshi ; 142(1): 39-64, 2022.
Article in Japanese | MEDLINE | ID: mdl-34980750

ABSTRACT

Lakes Sagami and Tsukui are reservoirs constructed by connecting to the Sagami River. Because of eutrophication of the lakes, cyanobacteria have appeared every year. This review deals with phenomena related to occurrence of cyanobacteria that have been observed for 40 years since 1974 at the lakes. These 40 years of observations raised three interesting issues including the retention of cyanobacteria on their surfaces. These phenomena have been attributed to the usual factors, such as illuminance, nutrition and water temperature, but our research results suggested that they cannot be resolved without the introduction of another factor. We have attempted to elucidate various phenomena involving cyanobacteria in lake ecosystems by chemical ecological methods using volatile organic compounds (VOCs) produced by the cyanobacteria as indicators. One of the VOCs, ß-cyclocitral, was significantly involved in the above phenomena, which was considered to be produced by the carotenoid cleavage dioxygenase (CCD) of the cyanobacteria. ß-Cyclocitral was not produced in the two known CCDs, but two additional CCDs to Microcystis aeruginosa participated to produce the ß-cyclocitral. These CCDs did not directly produce ß-cyclocitral, but it was accumulated in cells as their precursors. The released ß-cyclocitral underwent a Baeyer-Villiger-like oxidation. It was speculated that Microcystis activated the CCD genes through density stress and produced ß-cyclocitral, which acted as an allelopathic substance. As a result, the number of cells of cyanobacteria decreased, and the resulting nitrogen and phosphorus were fed to the living cyanobacteria. It is postulated that this "quorum sensing" was functioning in the above-mentioned issues.


Subject(s)
Cyanobacteria/physiology , Ecosystem , Fresh Water/microbiology , Hydrobiology/methods , Quorum Sensing , Aldehydes/metabolism , Cyanobacteria/enzymology , Cyanobacteria/metabolism , Dioxygenases/metabolism , Diterpenes/metabolism , Microcystis/metabolism , Nitrogen/metabolism , Oxidation-Reduction , Phosphorus/metabolism , Volatile Organic Compounds/metabolism
3.
Sci Rep ; 11(1): 19201, 2021 11 02.
Article in English | MEDLINE | ID: mdl-34725464

ABSTRACT

A variety of mammals suppress reproduction when they experience poor physical condition or environmental harshness. In many marine mammal species, reproductive impairment has been correlated to polychlorinated biphenyls (PCBs), the most frequently measured chemical pollutants, while the relative importance of other factors remains understudied. We investigate whether reproductively active females abandon investment in their foetus when conditions are poor, exemplified using an extensively studied cetacean species; the harbour porpoise (Phocoena phocoena). Data on disease, fat and muscle mass and diet obtained from necropsies in The Netherlands were used as proxies of health and nutritional status and related to pregnancy and foetal growth. This was combined with published life history parameters for 16 other areas to correlate to parameters reflecting environmental condition: mean energy density of prey constituting diets (MEDD), cumulative human impact and PCB contamination. Maternal nutritional status had significant effects on foetal size and females in poor health had lower probabilities of being pregnant and generally did not sustain pregnancy throughout gestation. Pregnancy rates across the Northern Hemisphere were best explained by MEDD. We demonstrate the importance of having undisturbed access to prey with high energy densities in determining reproductive success and ultimately population size for small cetaceans.


Subject(s)
Nutritional Status/physiology , Phocoena/metabolism , Reproduction/physiology , Animals , Cetacea/metabolism , Conservation of Natural Resources/methods , Energy Metabolism/physiology , Female , Hydrobiology/methods , Netherlands , Polychlorinated Biphenyls/adverse effects , Polychlorinated Biphenyls/analysis , Pregnancy , Reproduction/drug effects , Sexual Behavior, Animal/drug effects , Water Pollutants, Chemical/adverse effects , Water Pollutants, Chemical/analysis
4.
Am J Trop Med Hyg ; 104(4): 1394-1403, 2021 01 11.
Article in English | MEDLINE | ID: mdl-33432900

ABSTRACT

Onchocerciasis, caused by infection with Onchocerca volvulus, has been targeted for elimination by 2030. Currently, onchocerciasis elimination programs rely primarily on mass distribution of ivermectin. However, ivermectin alone may not be sufficient to achieve elimination in some circumstances, and additional tools may be needed. Vector control has been used as a tool to control onchocerciasis, but vector control using insecticides is expensive and ecologically detrimental. Community-directed removal of the trailing vegetation black fly larval attachment sites (slash and clear) has been shown to dramatically reduce vector biting densities. Here, we report studies to optimize the slash and clear process. Conducting slash and clear interventions at Simulium damnosum sensu stricto breeding sites located within 2 km of afflicted communities resulted in a 95% reduction in vector biting. Extending slash and clear further than 2 km resulted in no further decrease. A single intervention conducted at the first half of the rainy season resulted in a 97% reduction in biting rate, whereas an intervention conducted at the end of the rainy season resulted in a 94% reduction. Vector numbers in any of the intervention villages did not fully recover by the start of the following rainy season. These results suggest that slash and clear may offer an inexpensive and effective way to augment ivermectin distribution in the effort to eliminate onchocerciasis in Africa.


Subject(s)
Community Participation/methods , Insect Control/methods , Insect Vectors/parasitology , Onchocerca volvulus/pathogenicity , Onchocerciasis/prevention & control , Onchocerciasis/transmission , Simuliidae/parasitology , Animals , Humans , Hydrobiology/methods , Insect Bites and Stings/prevention & control , Onchocerciasis/epidemiology , Plants , Rain , Seasons , Simuliidae/physiology , Uganda
5.
Sci Rep ; 10(1): 21531, 2020 12 09.
Article in English | MEDLINE | ID: mdl-33298993

ABSTRACT

Environmental DNA (eDNA) is increasingly popular as a useful non-invasive method to monitor and study biodiversity and community structure in freshwater and marine environments. To effectively extract eDNA from the filter surface is a fundamental factor determining the representativeness of the samples. We improved the eDNA extraction efficiency of an established Sterivex method by 12- to 16-fold using a larger volume of lysis buffer mix coupled with backflushing the cartridges. The DNeasy extraction column could be overloaded when the environmental sample input is high, possibly due to a higher nonspecific binding present in environmental samples, thus resulting in a relatively lower quantity measured. Therefore, we included an internal control DNA in the extraction to monitor the extraction and purification efficiencies in field samples, which is crucial for quantification of original eDNA concentration. The use of Takara Probe qPCR Mix supplemented with protein-based additives improved the robustness of the real time PCR assay on inhibitor-rich environmental samples, but prior purification by Qiagen PowerClean Pro Cleanup kit could be essential for inhibitor-rich water samples, even though the recovery rate was unexpectedly low (average 33.0%). The improved extraction and quantification complement the qualitative analyses including metabarcoding and metagenomics in field application.


Subject(s)
DNA, Environmental/isolation & purification , DNA/isolation & purification , Hydrobiology/methods , Animals , Biodiversity , DNA/genetics , DNA, Environmental/genetics , Ecosystem , Environmental Monitoring/methods , Filtration/methods , Metagenomics/methods , Water/analysis
6.
J Biomol Tech ; 31(4): 125-150, 2020 12.
Article in English | MEDLINE | ID: mdl-33100918

ABSTRACT

Unfiltered and filtered water samples can be used to collect environmental DNA (eDNA). We developed the novel "Preserve, Precipitate, Lyse, Precipitate, Purify" (PPLPP) workflow to efficiently extract eDNA from Longmire's preserved unfiltered and filtered water samples (44-100% recovery). The PPLPP workflow includes initial glycogen-aided isopropanol precipitation, guanidium hypochlorite and Triton X-100-based lysis, terminal glycogen-aided polyethylene glycol precipitation, and inhibitor purification. Three novel eDNA assays that exclusively target species invasive to Australia were also developed: Tilapia_v2_16S concurrently targets Oreochromis mossambicus (Mozambique tilapia) and Tilapia mariae (spotted tilapia) while R.marina_16S and C.caroliniana_matK discretely target Rhinella marina (cane toad) and Cabomba caroliniana (fanwort), respectively. All 3 assays were validated in silico before in vitro and in situ validations using PPLPP workflow extracted samples. PPLPP workflow was concurrently validated in vitro and in situ using all 3 assays. In vitro validations demonstrated that 1) glycogen inclusion increased extracellular DNA recovery by ∼48-fold compared with glycogen exclusion, 2) swinging-bucket centrifugation for 90 min at 3270 g is equivalent to fixed-angle centrifugation for 5-20 min at 6750 g, and 3) Zymo OneStep Inhibitor Removal Kit, Qiagen DNeasy PowerClean Pro Cleanup Kit, and silica-Zymo double purification provide effective inhibitor removal. In situ validation demonstrated 95.8 ± 2.8% (mean ± SEM) detectability across all 3 target species in Longmire's preserved unfiltered and filtered water samples extracted using the PPLPP workflow (without phenol:chloroform:isoamyl alcohol purification) after 39 d of incubation at room temperature and 50°C. PPLPP workflow is recommended for future temperate and tropical eDNA studies that use Longmire's to preserve unfiltered or filtered water samples.


Subject(s)
Bufo marinus/genetics , DNA, Environmental/isolation & purification , Environmental Monitoring/methods , Hydrobiology/methods , Plant Weeds/genetics , Preservation, Biological/methods , Tilapia/genetics , Water/analysis , Animals , Australia , Computer Simulation , Ecosystem , Glycogen , Introduced Species , Real-Time Polymerase Chain Reaction , Workflow
7.
Sci Rep ; 10(1): 9380, 2020 06 10.
Article in English | MEDLINE | ID: mdl-32523129

ABSTRACT

Citizen science data (CSD) have the potential to be a powerful scientific approach to assess, monitor and predict biodiversity. Here, we ask whether CSD could be used to predict biodiversity of recently constructed man-made habitats. Biodiversity data on adult dragonfly abundance from all kinds of aquatic habitats collected by citizen scientists (volunteers) were retrieved from the Swedish Species Observation System and were compared with dragonfly abundance in man-made stormwater ponds. The abundance data of dragonflies in the stormwater ponds were collected with a scientific, standardized design. Our results showed that the citizen science datasets differed significantly from datasets collected scientifically in stormwater ponds. Hence, we could not predict biodiversity in stormwater ponds from the data collected by citizen scientists. Using CSD from past versus recent years or from small versus large areas surrounding the stormwater ponds did not change the outcome of our tests. However, we found that biodiversity patterns obtained with CSD were similar to those from stormwater ponds when we restricted our analyses to rare species. We also found a higher beta diversity for the CSD compared to the stormwater dataset. Our results suggest that if CSD are to be used for estimating or predicting biodiversity, we need to develop methods that take into account or correct for the under-reporting of common species in CSD.


Subject(s)
Biodiversity , Citizen Science/methods , Odonata/physiology , Animals , Ecosystem , Hydrobiology/methods , Ponds , Prognosis , Sweden
8.
Int J Health Geogr ; 18(1): 23, 2019 11 06.
Article in English | MEDLINE | ID: mdl-31694656

ABSTRACT

BACKGROUND: With the increase in unprecedented and unpredictable disease outbreaks due to human-driven environmental changes in recent years, we need new analytical tools to map and predict the spatial distribution of emerging infectious diseases and identify the biogeographic drivers underpinning their emergence. The aim of the study was to identify and compare the local and global biogeographic predictors such as landscape and climate that determine the spatial structure of leptospirosis and Buruli Ulcer (BU). METHODS: We obtained 232 hospital-confirmed leptospirosis (2007-2017) cases and 236 BU cases (1969-2017) in French Guiana. We performed non-spatial and spatial Bayesian regression modeling with landscape and climate predictor variables to characterize the spatial structure and the environmental drivers influencing the distribution of the two diseases. RESULTS: Our results show that the distribution of both diseases is spatially dependent on environmental predictors such as elevation, topological wetness index, proximity to cropland and increasing minimum temperature at the month of potential infection. However, the spatial structure of the two diseases caused by bacterial pathogens occupying similar aquatic niche was different. Leptospirosis was widely distributed across the territory while BU was restricted to the coastal riverbeds. CONCLUSIONS: Our study shows that a biogeographic approach is an effective tool to identify, compare and predict the geographic distribution of emerging diseases at an ecological scale which are spatially dependent to environmental factors such as topography, land cover and climate.


Subject(s)
Buruli Ulcer/epidemiology , Climate Change , Communicable Diseases, Emerging/epidemiology , Hydrobiology/methods , Leptospirosis/epidemiology , Bayes Theorem , Buruli Ulcer/diagnosis , Communicable Diseases, Emerging/diagnosis , French Guiana/epidemiology , Humans , Hydrobiology/trends , Leptospira/isolation & purification , Leptospirosis/diagnosis , Mycobacterium ulcerans/isolation & purification
9.
J Vis Exp ; (149)2019 07 30.
Article in English | MEDLINE | ID: mdl-31424435

ABSTRACT

The size spectrum is an inverse, allometric scaling relationship between average body mass (M) and the density (D) of individuals within an ecological community or food web. Importantly, the size spectrum assumes that individual size, rather than species' behavioral or life history characteristics, is the primary determinant of abundance within an ecosystem. Thus, unlike traditional allometric relationships that focus on species-level data (e.g., mean species' body size vs. population density), size spectra analyses are 'ataxic' - individual specimens are identified only by their size, without consideration of taxonomic identity. Size spectra models are efficient representations of traditional, complex food webs and can be used in descriptive as well as predictive contexts (e.g., predicting responses of large consumers to changes in basal resources). Empirical studies from diverse aquatic ecosystems have also reported moderate to high levels of similarity in size spectra slopes, suggesting that common processes may regulate the abundances of small and large organisms in very different settings. This is a protocol to model the community-level size spectrum in wadable streams. The protocol consists of three main steps. First, collect quantitative benthic fish and invertebrate samples that can be used to estimate local densities. Second, standardize the fish and invertebrate data by converting all individuals to ataxic units (i.e., individuals identified by size, irrespective of taxonomic identity), and summing individuals within log2 size bins. Third, use linear regression to model the relationship between ataxic M and D estimates. Detailed instructions are provided herein to complete each of these steps, including custom software to facilitate D estimation and size spectra modeling.


Subject(s)
Invertebrates , Models, Biological , Rivers , Animals , Body Size , Ecosystem , Fishes , Food Chain , Hydrobiology/methods , Models, Statistical , Population Density
10.
PLoS Biol ; 17(6): e2006806, 2019 06.
Article in English | MEDLINE | ID: mdl-31181076

ABSTRACT

Aquatic ecosystems worldwide continue to experience unprecedented warming and ecological change. Warming increases metabolic rates of animals, plants, and microbes, accelerating their use of energy and materials, their population growth, and interaction rates. At a much larger biological scale, warming accelerates ecosystem-level processes, elevating fluxes of carbon and oxygen between biota and the atmosphere. Although these general effects of temperature at finer and broader biological scales are widely observed, they can lead to contradictory predictions for how warming affects the structure and function of ecological communities at the intermediate scale of biological organization. We experimentally tested the hypothesis that the presence of predators and their associated species interactions modify the temperature dependence of net ecosystem oxygen production and respiration. We tracked a series of independent freshwater ecosystems (370 L) over 9 weeks, and we found that at higher temperatures, cascading effects of predators on zooplankton prey and algae were stronger than at lower temperatures. When grazing was weak or absent, standing phytoplankton biomass declined by 85%-95% (<1-fold) over the temperature gradient (19-30 °C), and by 3-fold when grazers were present and lacked predators. These temperature-dependent species interactions and consequent community biomass shifts occurred without signs of species loss or community collapse, and only modestly affected the temperature dependence of net ecosystem oxygen fluxes. The exponential increases in net ecosystem oxygen production and consumption were relatively insensitive to differences in trophic interactions among ecosystems. Furthermore, monotonic declines in phytoplankton standing stock suggested no threshold effects of warming across systems. We conclude that local changes in community structure, including temperature-dependent trophic cascades, may be compatible with prevailing and predictable effects of temperature on ecosystem functions related to fundamental effects of temperature on metabolism.


Subject(s)
Aquatic Organisms/metabolism , Ecosystem , Temperature , Animals , Biomass , Carbon/metabolism , Food Chain , Global Warming , Hydrobiology/methods , Phytoplankton/growth & development , Zooplankton/growth & development
11.
Sci Total Environ ; 649: 1157-1170, 2019 Feb 01.
Article in English | MEDLINE | ID: mdl-30308887

ABSTRACT

Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our objectives are to describe potential applications of eDNA across the wood products supply chain extending from regenerating forests, harvesting, and wood transport, to manufacturing facilities, and to review the current state of the science in this context. To meet our second objective, we summarize the taxa examined with targeted (PCR, qPCR or ddPCR) or metagenomic eDNA methods (eDNA metabarcoding), evaluate how estimated species richness compares between traditional field sampling and eDNA metabarcoding approaches, and compare the geographical representation of prior eDNA studies in freshwater ecosystems to global wood baskets. Potential applications of eDNA include evaluating the effects of forestry and forest manufacturing activities on aquatic biota, delineating fish-bearing versus non fish-bearing reaches, evaluating effectiveness of constructed road crossings for freshwater organism passage, and determining the presence of at-risk species. Studies using targeted eDNA approaches focused on fish, amphibians, and invertebrates, while metagenomic studies focused on fish, invertebrates, and microorganisms. Rare, threatened, or endangered species received the least attention in targeted eDNA research, but are arguably of greatest interest to sustainable forestry and forest manufacturing that seek to preserve freshwater biodiversity. Ultimately, using eDNA methods will enable forestry and forest manufacturing managers to have data-driven prioritization for conservation actions for all freshwater species.


Subject(s)
Aquatic Organisms/chemistry , DNA/analysis , Environment , Environmental Monitoring/methods , Forestry , Hydrobiology/methods , Fresh Water
12.
J Exp Biol ; 221(Pt 20)2018 10 19.
Article in English | MEDLINE | ID: mdl-30158131

ABSTRACT

For turtles, the thermal environment experienced during development plays critical roles in many biological processes. While the temperature inside an egg is assumed to match the substrate temperature, many factors such as evaporative cooling, metabolic heating and the insulating properties of extra-embryonic components can lead to thermal differences. However, no method developed to date has allowed for measurement of the embryonic temperature in live chelonian eggs. We designed a thermocouple-based technique to measure embryonic temperature, achieving 94% survival in Trachemys scripta This methodology may be applicable to other reptile species. We found that, while the temperature in the substrate adjacent to the eggshell accurately reflects the internal egg temperature, it differs from air temperature (∼2°C) in a moisture-dependent manner. Our results demonstrate that external egg temperature, but not air temperature, is suitable for assessing the effects of temperature on biological processes, which could be critical when considering that processes such as temperature-dependent sex determination in turtles occurs within a 4°C window.


Subject(s)
Embryo, Nonmammalian/physiology , Temperature , Turtles/physiology , Zoology/methods , Animals , Hydrobiology/methods , Ovum/physiology , Physiology/methods
13.
J Exp Biol ; 221(Pt 17)2018 09 13.
Article in English | MEDLINE | ID: mdl-30012577

ABSTRACT

We present a method for automating the measurement of upper thermal limits in small aquatic organisms. Upper thermal limits are frequently defined by the cessation of movement at high temperature, with measurement being performed by manual observation. Consequently, estimates of upper thermal limits may be subject to error and bias, both within and among observers. Our method utilises video-based tracking software to record the movement of individuals when exposed to high, lethal temperatures. We develop an algorithm in the R computing language that can objectively identify the loss of locomotory function from tracking data. Using independent experimental data, we validate our approach by demonstrating the expected response in upper thermal limits to acclimation temperature.


Subject(s)
Aquatic Organisms/physiology , Daphnia/physiology , Physiology/methods , Acclimatization/physiology , Animals , Female , Hot Temperature , Hydrobiology/methods , Zoology/methods
14.
J Exp Biol ; 221(Pt 17)2018 09 06.
Article in English | MEDLINE | ID: mdl-30002094

ABSTRACT

Machine vision represents an accurate and easily verifiable method for observing live organisms and this technology is constantly evolving in terms of accessibility and cost. Motivated by the complexity of observing small-sized aquatic organisms in experimental systems, and the difficulties related to real-time observation, sampling and counting without interfering with the organisms, we here present a new method for observing behaviour and dispersion of non-sessile zooplankton organisms using a custom-made tank with an associated machine vision system. The system was used in an experiment where the aim was to assess the effect of sound and ultrasound on the phototactic behaviour of copepodite stages of the salmon louse (Lepeophtheirus salmonis). The experimental set-up is described, including a triangular test tank designed to create a sound pressure gradient, a mechanized camera movement system and a vision system with dedicated image processing software.


Subject(s)
Copepoda/physiology , Ethology/methods , Phototaxis , Sound , Animals , Copepoda/radiation effects , Ethology/instrumentation , Hydrobiology/instrumentation , Hydrobiology/methods , Image Processing, Computer-Assisted/instrumentation , Photography/instrumentation , Phototaxis/radiation effects , Ultrasonic Waves , Zooplankton/physiology , Zooplankton/radiation effects
15.
Sci Rep ; 7(1): 14424, 2017 10 31.
Article in English | MEDLINE | ID: mdl-29089543

ABSTRACT

All communities may re-assemble after disturbance. Predictions for re-assembly outcomes are, however, rare. Here we model how fish communities in an extremely variable Australian desert river re-assemble following episodic floods and drying. We apply information entropy to quantify variability in re-assembly and the dichotomy between stochastic and deterministic community states. Species traits were the prime driver of community state: poor oxygen tolerance, low dispersal ability, and high fecundity constrain variation in re-assembly, shifting assemblages towards more stochastic states. In contrast, greater connectivity, while less influential than the measured traits, results in more deterministic states. Ecology has long recognised both the stochastic nature of some re-assembly trajectories and the role of evolutionary and bio-geographic processes. Our models explicitly test the addition of species traits and landscape linkages to improve predictions of community re-assembly, and will be useful in a range of different ecosystems.


Subject(s)
Behavior, Animal/physiology , Biota/physiology , Fishes/physiology , Animals , Australia , Biological Evolution , Ecology , Ecosystem , Floods , Hydrobiology/methods , Instinct , Models, Theoretical , Rivers , Stochastic Processes
16.
J Vis Exp ; (125)2017 07 20.
Article in English | MEDLINE | ID: mdl-28784974

ABSTRACT

Captive-rearing observations are valuable for revealing aspects of fish behavior and ecology when continuous field investigations are impossible. Here, a series of basic techniques are described to enable observations of the reproductive behavior of a wild-caught gobiid fish, as a model, kept in an aquarium. The method focuses on three steps: collection, transport, and observations of reproductive ecology of a substrate spawner. Essential aspects of live fish collection and transport are (1) preventing injury to the fish, and (2) careful acclimation to the aquarium. Preventing harm through injuries such as scratches or a sudden change of water pressure is imperative when collecting live fish, as any physical damage is likely to negatively affect the survival and later behavior of the fish. Careful acclimation to aquaria decreases the incidence death and mitigates the shock of transport. Observations during captive rearing include (1) the identification of individual fish and (2) monitoring spawned eggs without negative effects to the fish or eggs, thereby enabling detailed investigation of the study species' reproductive ecology. The subcutaneous injection of a visible implant elastomer (VIE) tag is a precise method for the subsequent identification of individual fish, and it can be used with a wide size range of fish, with minimal influence on their survival and behavior. If the study species is a substrate spawner that deposits adhesive eggs, an artificial nest site constructed from polyvinyl chloride (PVC) pipe with the addition of a removable waterproof sheet will facilitate counting and monitoring the eggs, lessening the investigator's influence on the nest-holding and egg-guarding behavior of the fish. Although this basic method entails techniques that are seldom mentioned in detail in research articles, they are fundamental for undertaking experiments that require the captive rearing of a wild fish.


Subject(s)
Fishes/physiology , Hydrobiology/methods , Reproduction , Animals , Female , Male
17.
Proc Natl Acad Sci U S A ; 114(37): 9930-9935, 2017 09 12.
Article in English | MEDLINE | ID: mdl-28847969

ABSTRACT

Climate change is altering aquatic environments in a complex way, and simultaneous shifts in many properties will drive evolutionary responses in primary producers at the base of both freshwater and marine ecosystems. So far, evolutionary studies have shown how changes in environmental drivers, either alone or in pairs, affect the evolution of growth and other traits in primary producers. Here, we evolve a primary producer in 96 unique environments with different combinations of between one and eight environmental drivers to understand how evolutionary responses to environmental change depend on the identity and number of drivers. Even in multidriver environments, only a few dominant drivers explain most of the evolutionary changes in population growth rates. Most populations converge on the same growth rate by the end of the evolution experiment. However, populations adapt more when these dominant drivers occur in the presence of other drivers. This is due to an increase in the intensity of selection in environments with more drivers, which are more likely to include dominant drivers. Concurrently, many of the trait changes that occur during the initial short-term response to both single and multidriver environmental change revert after about 450 generations of evolution. In future aquatic environments, populations will encounter differing combinations of drivers and intensities of selection, which will alter the adaptive potential of primary producers. Accurately gauging the intensity of selection on key primary producers will help in predicting population size and trait evolution at the base of aquatic food webs.


Subject(s)
Adaptation, Biological/physiology , Hydrobiology/methods , Biological Evolution , Chlamydomonas/growth & development , Chlamydomonas/metabolism , Climate Change , Ecosystem , Phenotype , Seawater
18.
Protist ; 168(4): 375-391, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28654859

ABSTRACT

Heterotrophic flagellates contribute significantly to the matter flux in aquatic and terrestrial ecosystems. Still today their quantification and taxonomic classification bear several problems in field studies, though these methodological problems seem to be increasingly ignored in current ecological studies. Here we describe and test different methods, the live-counting technique, different fixation techniques, cultivation methods like the liquid aliquot method (LAM), and a molecular single cell survey called aliquot PCR (aPCR). All these methods have been tested either using aquatic field samples or cultures of freshwater and marine taxa. Each of the described methods has its advantages and disadvantages, which have to be considered in every single case. With the live-counting technique a detection of living cells up to morphospecies level is possible. Fixation of cells and staining methods are advantageous due to the possible long-term storage and observation of samples. Cultivation methods (LAM) offer the possibility of subsequent molecular analyses, and aPCR tools might complete the deficiency of LAM in terms of the missing detection of non-cultivable flagellates. In summary, we propose a combination of several investigation techniques reducing the gap between the different methodological problems.


Subject(s)
Biodiversity , Eukaryota/classification , Eukaryota/isolation & purification , Hydrobiology/methods , Fresh Water , Plankton/classification , Plankton/isolation & purification , Seawater
19.
Braz. j. biol ; 76(2): 476-494, Apr.-June 2016. tab, graf
Article in English | LILACS | ID: lil-781401

ABSTRACT

Abstract Microturbellarians typically belong to the benthos and may occur in a wide variety of environments. They are abundant in freshwater and marine ecosystems and may occur in moist terrestrial habitats. However, turbellarians are seldom taken into account in studies of biodiversity. Most studies on Brazilian microturbellarians had taxonomical purposes and were done in the years 1940-1950. Thus, information on their occurrence and ecological aspects are dispersed throughout several papers. We intend here to summarize the biogeographical distribution and ecological aspects of microturbellarians recorded for Brazil, indicating the main gaps in their knowledge and possible actions to enhance studies on this group. There are 239 species of microturbellarians registered for Brazil, with records distributed in 12 states. However, just three states located in southern Brazil have records of 94% of microturbellarian species. Thus, knowledge on the systematics and geographical distribution of Brazilian microturbellarians clearly reflect the scientific activity over many years or decades in two states of southeastern and southern Brazil. Considering the scant information on this group in Brazil, which is also the situation of the Neotropical microturbellarians in general, some actions should be proposed. First, it would be necessary to sample in the diverse biomes, as well as in the various river and sea basins, based on standardized sampling protocols. Second, it would be necessary to encourage diverse research groups to include microturbellarians and/or turbellarians in general into biodiversity inventories and studies on community structure of invertebrates. Third, it is necessary to increase the number of research groups on microturbellarians, in order to augment the studies on their morphology, systematics, and ecology. Considering their abundance, species richness and ecological importance in aquatic environments, despite some peculiarities regarding their sampling, sorting and identification procedures, the challenge to study microturbellarians and enhance knowledge about them in Brazilian ecosystems should be faced.


Resumo Microturbelários são tipicamente bentônicos e podem ocorrer em uma ampla variedade de ambientes. São abundantes em ecossistemas marinhos e de água doce, podendo ocorrer em ambientes terrestres úmidos. Entretanto, turbelários raramente são considerados em estudos de diversidade. A maioria dos estudos sobre microturbelários brasileiros tiveram propósito taxonômico e foram realizados nos anos 1940-1950. Assim, informações sobre ocorrência e aspectos ecológicos estão dispersos em diversos artigos. O objetivo deste trabalho é sumarizar a distribuição biogeográfica e aspectos ecológicos dos microturbelários registrados para o Brasil, indicando as principais lacunas do conhecimento e possíveis ações para ampliar estudos sobre esse grupo. Há 239 espécies de microturbelários registradas no Brasil, com registros distribuídos em 12 estados. No entanto, 94% das espécies de microturbelários foram registradas em apenas três estados localizados no sul e sudeste do Brasil. Assim, o conhecimento sobre a sistemática e distribuição geográfica dos microturbelários claramente reflete as atividades científicas realizadas por muitos anos ou mesmo décadas em dois estados do sudeste e sul do Brasil. Considerando as escassas informações existentes sobre esse grupo no Brasil, assim como a situação dos microturbelários neotropicais em geral, algumas ações devem ser propostas. Primeiramente, é necessário realizar amostragens em diversos biomas, assim como nas várias bacias e regiões hidrográficas marinhas, baseadas em protocolos de amostragem padronizados. Em segundo lugar, faz-se necessário incentivar diversos grupos de pesquisa a incluir microturbelários e/ou turbelários em geral em inventários da biodiversidade e estudos de estrutura de comunidades de invertebrados. Em terceiro lugar, é necessário ampliar o número de grupos de pesquisa em microturbelários, para aumentar os estudos sobre sua morfologia, sistemática e ecologia. Considerando sua abundância, riqueza de espécies e importância ecológica em ambientes aquáticos, apesar de suas peculiaridades de amostragem, triagem e identificação, o desafio de estudar e ampliar o conhecimento sobre microturbelários em ecossistemas brasileiros deve ser enfrentado.


Subject(s)
Animals , Turbellaria/classification , Turbellaria/physiology , Fresh Water/analysis , Fresh Water/microbiology , Brazil , Ecosystem , Biodiversity , Rivers , Ecological and Environmental Phenomena , Hydrobiology/methods , Hydrobiology/statistics & numerical data , Invertebrates/classification
20.
Braz. j. biol ; 76(2): 461-468, Apr.-June 2016. tab, graf
Article in English | LILACS | ID: lil-781397

ABSTRACT

Abstract Aquatic plants can use differential allocation (trade-off) of carbon among their structures depending on the nutrition concentration. Given that N and P are limiting in the growth of plants, our questions were: Are the N and P concentrations in S. auriculata related to the biomass allocation to its structures? Is a differential allocation of N and P between floating and submerged leaves? We evaluated the relation between the nutrients and the biomass allocation, and the trade-off among the leaves using the Spearman correlation. Our results showed that N and P concentrations in S. auriculata are related to the biomass allocation to its structures, and that there is no trade-off of these nutrients between “shoot and root”. Thus, we can see the importance of N and P concentration in the biomass of S. auriculata, and why this plant is capable to development in different environments as a weedy.


Resumo Plantas aquáticas podem realizar alocação diferencial (trade-off) de carbono entre as suas estruturas dependo da disponibilidade de nutrientes. Considerando que N e P são limitantes para o crescimento de plantas, nossas perguntas foram: As concentrações de N e P em S. auriculata estão relacionadas com a alocação de biomassa para suas estruturas? Existe alocação diferencial de N e P entre os folíolos aéreos e a “raiz”? Avaliamos a relação entre os nutrientes e a biomassa, e o trade-off entre as folhas utilizando correlação de Spearman. Os resultados encontrados mostram que as concentrações de N e P em S. auriculata estão relacionadas com a alocação de biomassa para as suas estruturas, e que não há um trade-off de N e P entre os folíolos aéreos e a “raiz”. Dessa maneira, é possível observar a importância de N e P no ganho de biomassa de S. auriculata, e porque a espécie é capaz de se desenvolver em diferentes ambientes como uma planta daninha.


Subject(s)
Phosphorus/analysis , Phosphorus/metabolism , Plant Physiological Phenomena , Plant Weeds/physiology , Nitrogen/analysis , Nitrogen/metabolism , Carbon/metabolism , Statistics as Topic , Plant Leaves/growth & development , Biomass , Hydrobiology/methods
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