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1.
J Mol Model ; 28(11): 357, 2022 Oct 12.
Article in English | MEDLINE | ID: mdl-36222931

ABSTRACT

Within this work, we scrutinized the use of BeO nanotube (BeONT) as a nanocarrier for the anticancer drug hydroxyurea (HU) through density functional theory (DFT) calculations. We utilized the functional ꞷB97XD and the basis set 6-31G**. Based on a detailed surface analysis, HU was adsorbed on the surface of the nanotube through 4 different orientations. Also, no vibrational spectra exhibited imaginary frequencies, showing the minimum energy of the relaxed structures. The maximum adsorption energy and the minimum adsorption energy are in strong physical adsorption. The BeONT exhibited p-type semiconducting characteristics in all orientations since it received electronic charge from HU. The results demonstrate the possibility of using the BeONT as a promising carrier for HU drugs.


Subject(s)
Antineoplastic Agents , Nanotubes , Antineoplastic Agents/chemistry , Beryllium , Hydroxyurea/chemistry , Models, Molecular , Nanotubes/chemistry
2.
J Phys Chem Lett ; 12(37): 9020-9025, 2021 Sep 23.
Article in English | MEDLINE | ID: mdl-34516127

ABSTRACT

Ribonucleotide reductase (RNR), which supplies the building blocks for DNA biosynthesis and its repair, has been linked to human diseases and is emerging as a therapeutic target. Here, we present a mechanistic investigation of triapine (3AP), a clinically relevant small molecule that inhibits the tyrosyl radical within the RNR ß2 subunit. Solvent kinetic isotope effects reveal that proton transfer is not rate-limiting for inhibition of Y122· of E. coli RNR ß2 by the pertinent 3AP-Fe(II) adduct. Vibrational spectroscopy further demonstrates that unlike inhibition of the ß2 tyrosyl radical by hydroxyurea, a carboxylate containing proton wire is not at play. Binding measurements reveal a low nanomolar affinity (Kd ∼ 6 nM) of 3AP-Fe(II) for ß2. Taken together, these data should prompt further development of RNR inactivators based on the triapine scaffold for therapeutic applications.


Subject(s)
Enzyme Inhibitors/chemistry , Escherichia coli Proteins/metabolism , Escherichia coli/enzymology , Ferrous Compounds/chemistry , Pyridines/chemistry , Ribonucleotide Reductases/metabolism , Thiosemicarbazones/chemistry , Enzyme Inhibitors/metabolism , Escherichia coli Proteins/antagonists & inhibitors , Free Radicals/chemistry , Free Radicals/metabolism , Hydroxyurea/chemistry , Protein Binding , Protein Subunits/antagonists & inhibitors , Protein Subunits/chemistry , Protein Subunits/metabolism , Ribonucleotide Reductases/antagonists & inhibitors , Spectrophotometry, Ultraviolet , Spectroscopy, Fourier Transform Infrared
3.
Nanomedicine ; 37: 102451, 2021 10.
Article in English | MEDLINE | ID: mdl-34325034

ABSTRACT

In this paper, two amphiphilic graft copolymers were synthesized by grafting polylactic acid (PLA) as hydrophobic chain and poly(2-methyl-2-oxazoline) (PMeOx) or poly(2-methyl-2-oxazine) (PMeOzi) as hydrophilic chain, respectively, to a backbone of α,ß-poly(N-2-hydroxyethyl)-D,L-aspartamide (PHEA). These original graft copolymers were used to prepare nanoparticles delivering Zileuton in inhalation therapy. Among various tested methods, direct nanoprecipitation proved to be the best technique to prepare nanoparticles with the smallest dimensions, the narrowest dimensional distribution and a spherical shape. To overcome the size limitations for administration by inhalation, the nano-into-micro strategy was applied, encapsulating the nanoparticles in water-soluble mannitol-based microparticles by spray-drying. This process has allowed to produce spherical microparticles with the proper size for optimal lung deposition, and, once in contact with fluids mimicking the lung district, able to dissolve and release non-aggregated nanoparticles, potentially able to spread through the mucus, releasing about 70% of the drug payload in 24 h.


Subject(s)
Bronchial Diseases/drug therapy , Drug Delivery Systems , Hydroxyurea/analogs & derivatives , Nanoparticles/chemistry , Administration, Inhalation , Bronchi/drug effects , Bronchi/pathology , Bronchial Diseases/pathology , Cells, Cultured , Drug Carriers/chemistry , Drug Carriers/pharmacology , Epithelial Cells/drug effects , Epithelial Cells/metabolism , Epithelial Cells/pathology , Humans , Hydrophobic and Hydrophilic Interactions/drug effects , Hydroxyurea/chemistry , Hydroxyurea/pharmacology , Mucins/chemistry , Mucins/metabolism , Polyamines/pharmacology , Polyesters/chemistry , Polyesters/pharmacology , Polymers/chemistry , Polymers/pharmacology
4.
J Mol Model ; 27(3): 90, 2021 Feb 21.
Article in English | MEDLINE | ID: mdl-33611723

ABSTRACT

The density functional theory calculations with hybrid B3LYP/6-31G(d,p) basis sets have been used to examine the structural and electronic properties of boron nitride (BN) diamantane interacted with the drug hydroxyurea (HU) as an anticancer drug. The findings have been shown that there is a decrease in the total energy after combining the drug with diamantane. The energy levels of HOMO and LUMO analyses indicate that the value of HOMO energy increased slightly, while the value of LUMO energy decreased significantly in these systems in the HU/BN diamantane. In addition, the decreasing of the energy gap between HOMO and LUMO confirms a strong bond between the drug hydroxyurea and BN diamantane. Finally, the drug's stability and reactivity with BN diamantane were investigated by measuring chemical reaction characteristics such as chemical potential, electron affinity, global hardness, and electrophilicity index. As a result, the nanocrystal of BN diamantane can be considered a vector for the delivery of anticancer drugs within biological systems.


Subject(s)
Adamantane/chemistry , Antineoplastic Agents/chemistry , Boron Compounds/chemistry , Hydroxyurea/chemistry , Nanoparticles/chemistry , Antineoplastic Agents/pharmacology , Density Functional Theory , Drug Carriers/chemistry , Hydroxyurea/pharmacology , Structure-Activity Relationship
5.
Trends Genet ; 37(5): 476-487, 2021 05.
Article in English | MEDLINE | ID: mdl-33608117

ABSTRACT

Recent structural analysis of Fe-S centers in replication proteins and insights into the structure and function of DNA polymerase δ (DNA Pol δ) subunits have shed light on the key role played by this polymerase at replication forks under stress. The sequencing of cancer genomes reveals multiple point mutations that compromise the activity of POLD1, the DNA Pol δ catalytic subunit, whereas the loci encoding the accessory subunits POLD2 and POLD3 are amplified in a very high proportion of human tumors. Consistently, DNA Pol δ is key for the survival of replication stress and is involved in multiple long-patch repair pathways. Synthetic lethality arises from compromising the function and availability of the noncatalytic subunits of DNA Pol δ under conditions of replication stress, opening the door to novel therapies.


Subject(s)
DNA Polymerase III/chemistry , DNA Polymerase III/metabolism , DNA Replication/physiology , Neoplasms/genetics , Animals , DNA Polymerase III/genetics , DNA Repair , Humans , Hydroxyurea/chemistry , Neoplasms/pathology , Oncogenes
6.
Mol Microbiol ; 115(1): 28-40, 2021 01.
Article in English | MEDLINE | ID: mdl-32798330

ABSTRACT

Eeyarestatin 1 (ES1) is an inhibitor of endoplasmic reticulum (ER) associated protein degradation, Sec61-dependent Ca2+ homeostasis and protein translocation into the ER. Recently, evidence was presented showing that a smaller analog of ES1, ES24, targets the Sec61-translocon, and captures it in an open conformation that is translocation-incompetent. We now show that ES24 impairs protein secretion and membrane protein insertion in Escherichia coli via the homologous SecYEG-translocon. Transcriptomic analysis suggested that ES24 has a complex mode of action, probably involving multiple targets. Interestingly, ES24 shows antibacterial activity toward clinically relevant strains. Furthermore, the antibacterial activity of ES24 is equivalent to or better than that of nitrofurantoin, a known antibiotic that, although structurally similar to ES24, does not interfere with SecYEG-dependent protein trafficking. Like nitrofurantoin, we find that ES24 requires activation by the NfsA and NfsB nitroreductases, suggesting that the formation of highly reactive nitroso intermediates is essential for target inactivation in vivo.


Subject(s)
Hydrazones/pharmacology , Hydroxyurea/analogs & derivatives , SEC Translocation Channels/metabolism , Anti-Bacterial Agents/metabolism , Endoplasmic Reticulum/metabolism , Escherichia coli/metabolism , Escherichia coli Proteins/metabolism , Hydrazones/chemistry , Hydroxyurea/chemistry , Hydroxyurea/pharmacology , Membrane Proteins/metabolism , Nitroreductases/metabolism , Protein Transport/drug effects , SEC Translocation Channels/drug effects
7.
Molecules ; 25(20)2020 Oct 14.
Article in English | MEDLINE | ID: mdl-33066378

ABSTRACT

A novel series of zileuton-hydroxycinnamic acid hybrids were synthesized and screened as 5-lipoxygenase (5-LO) inhibitors in stimulated HEK293 cells and polymorphonuclear leukocytes (PMNL). Zileuton's (1) benzo[b]thiophene and hydroxyurea subunits combined with hydroxycinnamic acid esters' ester linkage and phenolic acid moieties were investigated. Compound 28, bearing zileuton's (1) benzo[b]thiophene and sinapic acid phenethyl ester's (2) α,ß-unsaturated phenolic acid moiety 28, was shown to be equipotent to zileuton (1), the only clinically approved 5-LO inhibitor, in stimulated HEK293 cells. Compound 28 was three times as active as zileuton (1) for the inhibition of 5-LO in PMNL. Compound 37, bearing the same sinapic acid (3,5-dimethoxy-4-hydroxy substitution) moiety as 28, combined with zileuton's (1) hydroxyurea subunit was inactive. This result shows that the zileuton's (1) benzo[b]thiophene moiety is essential for the inhibition of 5-LO product biosynthesis with our hydrids. Unlike zileuton (1), Compound 28 formed two π-π interactions with Phe177 and Phe421 as predicted when docked into 5-LO. Compound 28 was the only docked ligand that showed a π-π interaction with Phe177 which may play a part in product specificity as reported.


Subject(s)
Coumaric Acids/chemistry , Hydroxyurea/analogs & derivatives , Lipoxygenase Inhibitors/chemistry , Lipoxygenase Inhibitors/pharmacology , Arachidonate 5-Lipoxygenase/chemistry , Arachidonate 5-Lipoxygenase/metabolism , Computer Simulation , Drug Evaluation, Preclinical , Free Radical Scavengers/chemistry , Free Radical Scavengers/pharmacology , HEK293 Cells , Humans , Hydroxyurea/chemistry , Lipoxygenase Inhibitors/chemical synthesis , Molecular Docking Simulation , Neutrophils/drug effects , Neutrophils/metabolism , Structure-Activity Relationship
8.
Article in English | MEDLINE | ID: mdl-32862024

ABSTRACT

Hydroxyurea (HU) is the first-ever approved drug by the United States Food and Drug Administration (USFDA) for the management of sickle cell anemia (SCA). However, its treatment is associated with severe liabilities like myelosuppression. Therefore, the aim of the present investigation was to identify phytotherapeutics through assessment of the pharmacokinetic interaction of HU with dietary bioflavonoids followed by elucidation of the same phytoconstituents for their ability to protect HU-induced toxicity in hematological profile. In this direction, we developed a sensitive ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) method to estimate HU in rat plasma at first and then validated as per USFDA guidelines as there is no such precedent in the literature. A simple plasma protein precipitation method was employed for plasma sample processing. The separation was achieved in gradient mode using Syncronis HILIC column (100 × 4.6 mm, 3 µm) with a mobile phase composition of water containing 0.1% (v/v) formic acid and acetonitrile. Ionization was carried out in positive heated-electrospray ionization (H-ESI) mode. Detection was done in selected reaction monitoring (SRM) mode with m/z 77.1 > 44.4 and m/z 75.1 > 58.2 for HU and methylurea (internal standard), respectively. All the validation parameters were within the acceptable criteria. This bioanalytical method was found to be useful in assessing the preclinical pharmacokinetic interaction of HU. Concomitant administration of chrysin or quercetin with HU in rats significantly enhanced the oral exposure of HU. Lowering of total red blood cells (RBC) and hemoglobin (Hb) level by HU in rats was significantly improved in the presence of chrysin, quercetin, and naringenin. Overall, both chrysin and quercetin showed potential to be a promising phytotherapeutics for concomitant therapy with HU to combat its dose-dependent side effects.


Subject(s)
Chromatography, High Pressure Liquid/methods , Hydroxyurea/blood , Hydroxyurea/pharmacokinetics , Tandem Mass Spectrometry/methods , Animals , Drug Interactions , Flavonoids/blood , Flavonoids/pharmacokinetics , Hydroxyurea/chemistry , Linear Models , Male , Rats , Rats, Wistar , Reproducibility of Results , Sensitivity and Specificity
9.
Adv Mater ; 32(33): e2002739, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32656801

ABSTRACT

Improving tumor accumulation and delivery efficiency is an important goal of nanomedicine. Neutrophils play a vital role in both chemically mediating inflammatory response through myeloperoxidase (MPO) and biologically promoting metastasis during inflammation triggered by the primary tumor or environmental stimuli. Herein, a novel theranostic nanomedicine that targets both the chemical and biological functions of neutrophils in tumor is designed, facilitating the enhanced retention and sustained release of drug cargos for improved cancer theranostics. 5-hydroxytryptamine (5-HT) is equipped onto nanoparticles (NPs) loaded with photosensitizers and Zileuton (a leukotriene inhibitor) to obtain MPO and neutrophil targeting NPs, denoted as HZ-5 NPs. The MPO targeting property of 5-HT modified NPs is confirmed by noninvasive positron emission tomography imaging studies. Furthermore, photodynamic therapy is used to initiate the inflammatory response which further mediated the accumulation and retention of neutrophil targeting NPs in a breast cancer model. This design renders a greatly improved theranostic nanomedicine for efficient tumor suppression, and more importantly, inhibition of neutrophil-mediated lung metastasis via the sustained release of Zileuton. This work presents a novel strategy of targeting neutrophils for improved tumor theranostics, which may open up new avenues in designing nanomedicine through exploiting the tumor microenvironment.


Subject(s)
Molecular Targeted Therapy/methods , Neoplasms/diagnosis , Neoplasms/drug therapy , Neutrophils/drug effects , Cell Line, Tumor , Drug Design , Drug Liberation , Humans , Hydroxyurea/analogs & derivatives , Hydroxyurea/chemistry , Hydroxyurea/pharmacology , Hydroxyurea/therapeutic use , Nanoparticles/chemistry , Neoplasms/immunology , Photosensitizing Agents/chemistry , Photosensitizing Agents/pharmacology , Photosensitizing Agents/therapeutic use , Serotonin/chemistry , Tumor Microenvironment/drug effects
10.
Biophys Chem ; 263: 106407, 2020 08.
Article in English | MEDLINE | ID: mdl-32460103

ABSTRACT

Here we report a density functional theory study on the pristine and amino acid-functionalized C4B32 borospherene as drug delivery systems. Inspired by a fascinating finding of novel borospherenes which were designed by doping four carbon atoms in the B364- cluster (C4B32), we suggest the pristine and alanine-functionalized C4B32 clusters as high-efficient drug delivery systems. The main objective of the present work is to investigate the interaction of pristine and alanine-conjugated borospherenes with an anticancer drug (hydroxyurea) by means of the density functional theory. Our calculations reveal that the amino acid functionalization can not only transport biological drugs but also leads to improve the drug adsorption on the C4B32 cluster. Our UV-Vis calculations represent that the electronic spectra of the drug@cluster systems show a red shift toward a higher wavelength. In order to go further and gain insight into the binding features of the studied borospherenes with hydroxyurea drug, the Atoms in Molecules analysis was also performed. We found that the electrostatic nature of the hydroxyurea/cluster bonding. Consequently, our results represented that the alanine-functionalized C4B32 borospherene could be used as a potential carrier for the delivery of anticancer drugs.


Subject(s)
Amino Acids/chemistry , Antineoplastic Agents/administration & dosage , Antineoplastic Agents/chemistry , Boron Compounds/chemistry , Carbon/chemistry , Density Functional Theory , Drug Delivery Systems , Hydroxyurea/chemistry , Drug Carriers/chemistry
11.
J Phys Chem B ; 124(2): 345-354, 2020 01 16.
Article in English | MEDLINE | ID: mdl-31904962

ABSTRACT

Proton-coupled electron transfer (PCET) is fundamental to many important biological reactions, including solar energy conversion and DNA synthesis. For example, class Ia ribonucleotide reductases (RNRs) contain a tyrosyl radical-diiron cofactor with one aspartate ligand, D84. The tyrosyl radical, Y122•, in the ß2 subunit acts as a radical initiator and oxidizes an active site cysteine in the α2 subunit. A transient quaternary α2/ß2 complex is induced by substrate and effector binding. The hydroxamic acid, hydroxyurea (HU), reduces Y122• in a PCET reaction involving an electron and proton. This reaction is associated with the loss of activity, a conformational change at Y122, and a change in hydrogen bonding to the Fe1 ligand, D84. Here, we use isotopic labeling, solvent isotope exchange, proton inventories, and reaction-induced Fourier transform infrared (RIFT-IR) spectroscopy to show that the PCET reactions of hydroxamic acids are associated with a characteristic spectrum, which is assignable to electrostatic changes at nonligating aspartate residues. Notably, RIFT-IR spectroscopy reveals this characteristic spectrum when the effects of HU, hydroxylamine, and N-methylhydroxylamine are compared. A large solvent isotope effect is observed for each of the hydroxamic acid reactions, and proton inventories predict that the reactions are associated with the transfer of multiple protons in the transition state. The reduction of Y122• with 4-methoxyphenol does not lead to these characteristic carboxylate shifts and is associated with only a small solvent isotope effect. In addition to studies of the effects of hydroxamic acids on ß2 alone, the reactions involving the quaternary α2ß2 complex were also investigated. HU treatment of the quaternary complex, α2/ß2/ATP/CDP, leads to a similar carboxylate shift spectrum, as observed with ß2 alone. The use of globally labeled 13C chimeras (13C α2, 13C ß2) confirms the assignment. Because the spectrum is sensitive to 13C ß2 labeling, but not 13C α2 labeling, the quaternary complex spectrum is assigned to electrostatic changes in ß2 carboxylate groups. Examination of the ß2 X-ray structure reveals a hydrogen-bonded network leading from the protein surface to Y122. This predicted network includes nonligating aspartates, glutamate ligands to the iron cluster, and predicted crystallographically resolved water molecules. The network is similar when class Ia RNR structures from Escherichia coli, human, and mouse are compared. We propose that the PCET reactions of hydroxamic acids are mediated by a hydrogen-bonded proton wire in the ß2 subunit.


Subject(s)
Hydroxylamine/chemistry , Hydroxylamines/chemistry , Hydroxyurea/chemistry , Protons , Ribonucleotide Reductases/chemistry , Tyrosine/chemistry , Animals , Electrons , Escherichia coli/enzymology , Escherichia coli Proteins/chemistry , Humans , Hydrogen Bonding , Mice , Oxidation-Reduction , Protein Subunits/chemistry
12.
J Pharm Biomed Anal ; 179: 112982, 2020 Feb 05.
Article in English | MEDLINE | ID: mdl-31785932

ABSTRACT

The obligatory testing of drug molecules and their impurities to protect users against toxic compounds seems to provide interesting opportunities for new drug discovery. Impurities, which proved to be non-toxic, may be explored for their own therapeutic potential and thus be a part of future drug discovery. The essential role of pharmaceutical analysis can thus be extended to achieve this purpose. The present study examined these objectives by characterizing the major degradation products of zileuton (ZLT), a 5-lipoxygenase (5-LOX) inhibitor being prevalently used to treat asthma. The drug sample was exposed to forced degradation and found susceptible to hydrolysis and oxidative stress. The obtained Forced Degradation Products (FDP's) were resolved using an earlier developed and validated Ultra-High-Pressure Liquid Chromatography Photo-Diode-Array (UHPLC-PDA) protocol. ZLT, along with acid-and alkali-stressed samples, were subjected to Liquid-chromatography Mass-spectrometry Quadrupole Time-of-flight (LC/MS-QTOF) studies. Major degradation products were isolated using Preparative TLC and characterized using Q-TOF and/or Proton nuclear magnetic resonance (1HNMR) studies. The information obtained was assembled for structural conformation. Toxicity Prediction using Komputer Assisted Technology (TOPKAT) toxicity analyses indicated some FDP's as non-toxic when compared to ZLT. Hence, these non-toxic impurities may have bio-affinity and can be explored to interact with other therapeutic targets, to assist in drug discovery. The drug molecule and the characterized FDP's were subjected to 3-Dimensional Extra Precision (3D-XP)-molecular docking to explore changes in bio-affinity for the 5-LOX enzyme (PDB Id: 3V99). One FDP was found to have a higher binding affinity than the drug itself, indicating it may be a suitable antiasthmatic. The possibility of being active at other sites cannot be neglected and this is evaluated to a reasonable extent by Prediction of Activity Spectra for Substances (PASS). Besides being antiasthmatic, some FDP's were predicted antineoplastic, antiallergic and inhibitors of Complement Factor-D.


Subject(s)
Drug Contamination , Hydroxyurea/analogs & derivatives , Arachidonate 5-Lipoxygenase/drug effects , Chromatography, Liquid/methods , Computer Simulation , Drug Discovery/methods , Hydrolysis , Hydroxyurea/chemistry , Hydroxyurea/therapeutic use , Hydroxyurea/toxicity , Magnetic Resonance Spectroscopy/methods , Molecular Docking Simulation , Molecular Structure , Oxidative Stress , Software , Tandem Mass Spectrometry/methods
13.
Biomed Chromatogr ; 34(3): e4753, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31777090

ABSTRACT

Advancements in proteomic tools offer a comprehensive solution to studying the complexity of diseases at molecular level. This study focusses on the clinical proteomic profiling of pre- and post-hydroxyurea (HU)-treated ß-thalassemia patients in parallel with healthy individuals to better understand the role of HU in the treatment of ß-thalassemia. The strategy encompasses sequential high-resolution protein fractionation using MicroSol-isoelectric focusing (ZOOM- IEF) followed by one-dimensional SDS-PAGE before nano-RP-LC-MS/ MS analysis of tryptic peptides. Protein identification was performed through Mascot search using NCBInr and SwissProt databases. Several different proteins were observed in pool serum samples of each of the three study groups. Approximately, 1250 proteins exclusive to each group were identified, and after removing the redundant and low sequence coverage proteins, the number was reduced to 576 (201 in healthy, 187 in HU-untreated and 188 in HU-treated group). Uniquely identified proteins in the HU-treated group regulate the focal adhesion, ECM-receptor interaction, PI3K-Akt signaling, Rap1 signaling, cAMP signaling, platelet activation, and Ca2+ signaling pathways in the HU-treated group. The proteomic profile presented here will add to the current state of understanding of molecular mechanisms involved in hydroxyurea treatment of ß-thalassemia.


Subject(s)
Blood Proteins/analysis , Isoelectric Focusing/methods , Proteome/analysis , Proteomics/methods , beta-Thalassemia , Biomarkers/analysis , Blood Proteins/chemistry , Blood Proteins/classification , Blood Proteins/isolation & purification , Chromatography, Liquid/methods , Humans , Hydroxyurea/chemistry , Nanomedicine , Proteome/chemistry , Proteome/isolation & purification , Spectrometry, Mass, Electrospray Ionization/methods , Tandem Mass Spectrometry/methods , beta-Thalassemia/blood , beta-Thalassemia/metabolism
14.
Nanomedicine ; 24: 102106, 2020 02.
Article in English | MEDLINE | ID: mdl-31666201

ABSTRACT

Tumor recurrence, metastatic spread and progressive gain of chemo-resistance of advanced cancers are sustained by the presence of cancer stem cells (CSCs) within the tumor. Targeted therapies with the aim to eradicate these cells are thus highly regarded. However, often the use of new anti-cancer therapies is hampered by pharmacokinetic demands. Drug delivery through nanoparticles has great potential to increase efficacy and reduce toxicity and adverse effects. However, its production has to be based on intelligent design. Likewise, we developed polymeric nanoparticles loaded with Zileuton™, a potent inhibitor of cancer stem cells (CSCs), which was chosen based on high throughput screening. Its great potential for CSCs treatment was subsequently demonstrated in in vitro and in in vivo CSC fluorescent models. Encapsulated Zileuton™ reduces amount of CSCs within the tumor and effectively blocks the circulating tumor cells (CTCs) in the blood stream and metastatic spread.


Subject(s)
Breast Neoplasms , Hydroxyurea/analogs & derivatives , Micelles , Neoplastic Cells, Circulating , Neoplastic Stem Cells , Animals , Breast Neoplasms/drug therapy , Breast Neoplasms/metabolism , Breast Neoplasms/pathology , Female , Humans , Hydroxyurea/chemistry , Hydroxyurea/pharmacology , MCF-7 Cells , Mice , Mice, Inbred NOD , Mice, SCID , Neoplastic Cells, Circulating/metabolism , Neoplastic Cells, Circulating/pathology , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/pathology , Xenograft Model Antitumor Assays
15.
J Biomol Struct Dyn ; 37(18): 4852-4862, 2019 11.
Article in English | MEDLINE | ID: mdl-30721644

ABSTRACT

In this study, the adsorption of Hydroxyurea (HU) onto the inner and outer surfaces of boron nitride and carbon nanotubes (CNTs) was investigated using the density functional theory calculations and molecular dynamics (MDs) simulations in aqueous solution. The values of the adsorption energy show that HU molecule is preferentially adsorbed inside of boron nitride and CNTs with the molecular axis parallel to the tubes axis, which means that the cavity of nanotubes is favorable for encapsulation of this drug. Also, it was found that the HU/boron nitride nanotube (BNNT) system is more stable than the HU/CNT system. The stability of the complexes of HU/ BNNT attributed to the formation of the intermolecular hydrogen bonds between the H atoms of HU molecule and the N atoms of BNNT, which is confirmed by Bader's quantum theory of atoms in molecules. The natural bond orbital analysis shows the charge transfers occur from HU molecule to nanotubes in all complexes. Moreover, the adsorption of HU molecule on the surfaces of the nanotubes was investigated by explicit water models. Also, the adsorption behavior of HU on the functionalized boron nitride and CNTs is investigated to design and develop new nanocarriers for biomedical applications. Furthermore, MDs simulations are examined in the presence of one and two drug molecules. The obtained results illustrate that the lowest value of Lennard-Jones (L-J) energy between drug and nanotubes exist in the simulation system with two drug molecules.


Subject(s)
Antineoplastic Agents/chemistry , Boron Compounds/chemistry , Drug Carriers/chemistry , Hydroxyurea/chemistry , Nanotubes, Carbon/chemistry , Adsorption , Hydrogen Bonding , Molecular Dynamics Simulation , Quantum Theory , Water/chemistry
16.
Exp Biol Med (Maywood) ; 244(2): 132-146, 2019 02.
Article in English | MEDLINE | ID: mdl-30691292

ABSTRACT

IMPACT STATEMENT: Sickle cell disease (SCD) is one of the most common inherited diseases and is associated with a reduced life expectancy and acute and chronic complications, including frequent painful vaso-occlusive episodes that often require hospitalization. At present, treatment of SCD is limited to hematopoietic stem cell transplant, transfusion, and limited options for pharmacotherapy, based principally on hydroxyurea therapy. This review highlights the importance of intracellular cGMP-dependent signaling pathways in SCD pathophysiology; modulation of these pathways with soluble guanylate cyclase (sGC) stimulators or phosphodiesterase (PDE) inhibitors could potentially provide vasorelaxation and anti-inflammatory effects, as well as elevate levels of anti-sickling fetal hemoglobin.


Subject(s)
Anemia, Sickle Cell/drug therapy , Cyclic GMP/metabolism , Anemia, Sickle Cell/physiopathology , Fetal Hemoglobin/metabolism , Hemoglobin, Sickle/chemistry , Humans , Hydroxyurea/chemistry , Hydroxyurea/therapeutic use , Models, Biological , Nitric Oxide/metabolism , Oxidative Stress , Phosphodiesterase Inhibitors/therapeutic use , Signal Transduction
17.
Molecules ; 23(11)2018 Oct 29.
Article in English | MEDLINE | ID: mdl-30380600

ABSTRACT

The antioxidant activity of molecules constitutes an important factor for the regulation of redox homeostasis and reduction of the oxidative stress. Cells affected by oxidative stress can undergo genetic alteration, causing structural changes and promoting the onset of chronic diseases, such as cancer. We have performed an in silico study to evaluate the antioxidant potential of two molecules of the zinc database: ZINC08706191 (Z91) and ZINC08992920 (Z20). Molecular docking, quantum chemical calculations (HF/6-31G**) and Pearson's correlation have been performed. Molecular docking results of Z91 and Z20 showed both the lower binding affinity (BA) and inhibition constant (Ki) values for the receptor-ligand interactions in the three tested enzymes (cytochrome P450-CP450, myeloperoxidase-MP and NADPH oxidase-NO) than the control molecules (5-fluorouracil-FLU, melatonin-MEL and dextromethorphan-DEX, for each receptor respectively). Molecular descriptors were correlated with Ki and strong correlations were observed for the CP450, MP and NO receptors. These and other results attest the significant antioxidant ability of Z91 and Z20, that may be indicated for further analyses in relation to the control of oxidative stress and as possible antioxidant agents to be used in the pharmaceutical industry.


Subject(s)
Antioxidants/chemistry , Caffeine/analogs & derivatives , Caffeine/chemistry , Enzymes/chemistry , Catalytic Domain , Computer Simulation , Enzymes/metabolism , Febuxostat/chemistry , Fluorouracil/chemistry , Hydroxyurea/analogs & derivatives , Hydroxyurea/chemistry , Molecular Docking Simulation , Quantum Theory
18.
Nat Commun ; 9(1): 3181, 2018 08 09.
Article in English | MEDLINE | ID: mdl-30093638

ABSTRACT

DNA replication is a challenge for the faithful transmission of parental information to daughter cells, as both DNA and chromatin organization must be duplicated. Replication stress further complicates the safeguard of epigenome integrity. Here, we investigate the transmission of the histone variants H3.3 and H3.1 during replication. We follow their distribution relative to replication timing, first in the genome and, second, in 3D using super-resolution microscopy. We find that H3.3 and H3.1 mark early- and late-replicating chromatin, respectively. In the nucleus, H3.3 forms domains, which decrease in density throughout replication, while H3.1 domains increase in density. Hydroxyurea impairs local recycling of parental histones at replication sites. Similarly, depleting the histone chaperone ASF1 affects recycling, leading to an impaired histone variant landscape. We discuss how faithful transmission of histone variants involves ASF1 and can be impacted by replication stress, with ensuing consequences for cell fate and tumorigenesis.


Subject(s)
Cell Cycle Proteins/chemistry , Chromatin/chemistry , DNA Replication , Histones/chemistry , Cell Lineage , DNA/chemistry , Epigenesis, Genetic , Genome, Human , HeLa Cells , Humans , Hydroxyurea/chemistry , Microscopy , Microscopy, Fluorescence , Molecular Chaperones , Nucleosomes/chemistry , S Phase
19.
Nucleic Acids Res ; 46(15): 7522-7532, 2018 09 06.
Article in English | MEDLINE | ID: mdl-30085206

ABSTRACT

G-quadruplex DNA has been viewed as a prospective anti-cancer target owing to its potential biological relevance. Real-time monitoring of DNA G-quadruplex structures in living cells can provide valuable insights into the relationship between G-quadruplex formation and its cellular consequences. However, the probes capable of detecting DNA G-quadruplexes in living cells are still very limited. Herein, we reported a new fluorescent probe, IMT, for real-time visualization of DNA G-quadruplex structures in living cells. Using IMT as a fluorescent indicator, the quantity changes of DNA G-quadruplex at different points in time during continuous cellular progression responding to Aphidicolin and Hydroxyurea treatment have been directly visualized. Our data demonstrate that IMT will be a valuable tool for exploring DNA G-quadruplexes in live cells. Further application of IMT in fluorescence imaging may reveal more information on the roles of DNA G-quadruplexes in biological systems.


Subject(s)
DNA/chemistry , Fluorescent Dyes/chemistry , G-Quadruplexes/drug effects , Aphidicolin/chemistry , Cell Line, Tumor , HeLa Cells , Humans , Hydroxyurea/chemistry , Microscopy, Fluorescence , Spectrometry, Fluorescence
20.
J Enzyme Inhib Med Chem ; 33(1): 1194-1198, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30044657

ABSTRACT

The inhibition of α-, ß-, γ-, and δ-class carbonic anhydrases (CAs, EC 4.2.1.1) from bacteria (Vibrio cholerae and Porphyromonas gingivalis) and diatoms (Thalassiosira weissflogii) with a panel of N'-aryl-N-hydroxy-ureas is reported. The α-/ß-CAs from V. cholerae (VchCAα and VchCAß) were effectively inhibited by some of these derivatives, with KIs in the range of 97.5 nM - 7.26 µM and 52.5 nM - 1.81 µM, respectively, whereas the γ-class enzyme VchCAγ was less sensitive to inhibition (KIs of 4.75 - 8.87 µM). The ß-CA from the pathogenic bacterium Porphyromonas gingivalis (PgiCAß) was not inhibited by these compounds (KIs > 10 µM) whereas the corresponding γ-class enzyme (PgiCAγ) was effectively inhibited (KIs of 59.8 nM - 6.42 µM). The δ-CA from the diatom Thalassiosira weissflogii (TweCAδ) showed effective inhibition with these derivatives (KIs of 33.3 nM - 8.74 µM). As most of these N-hydroxyureas are also ineffective as inhibitors of the human (h) widespread isoforms hCA I and II (KIs > 10 µM), this class of derivatives may lead to the development of CA inhibitors selective for bacterial/diatom enzymes over their human counterparts and thus to anti-infectives or agents with environmental applications.


Subject(s)
Carbonic Anhydrase Inhibitors/pharmacology , Diatoms/enzymology , Hydroxyurea/pharmacology , Isoenzymes/antagonists & inhibitors , Porphyromonas gingivalis/enzymology , Vibrio cholerae/enzymology , Carbonic Anhydrase Inhibitors/isolation & purification , Humans , Hydroxyurea/chemistry
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