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1.
Curr Microbiol ; 81(7): 207, 2024 Jun 04.
Article in English | MEDLINE | ID: mdl-38831110

ABSTRACT

The current study aimed to evaluate the plant growth-promoting (PGP) potential of endophytic strain Bacillus subtilis KU21 isolated from the roots of Rosmarinus officinalis. The strain exhibited multiple traits of plant growth promotion viz., phosphate (P) solubilization, nitrogen fixation, indole-3-acetic acid (IAA), siderophore, hydrogen cyanide (HCN), lytic enzymes production, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. The isolate also exhibited antagonistic activity against phytopathogenic fungi, i.e., Fusarium oxysporum, Fusarium graminiarum, and Rhizoctonia solani. The P-solubilization activity of B. subtilis KU21 was further elucidated via detection of glucose dehydrogenase (gdh) gene involved in the production of gluconic acid which is responsible for P-solubilization. Further, B. subtilis KU21 was evaluated for in vivo growth promotion studies of tomato (test crop) under net house conditions. A remarkable increase in seed germination, plant growth parameters, nutrient acquisition, and soil quality parameters (NPK) was observed in B. subtilis KU21-treated plants over untreated control. Hence, the proposed module could be recommended for sustainable tomato production in the Northwest Himalayan region without compromising soil health and fertility.


Subject(s)
Bacillus subtilis , Endophytes , Plant Roots , Rosmarinus , Bacillus subtilis/genetics , Bacillus subtilis/growth & development , Bacillus subtilis/isolation & purification , Bacillus subtilis/metabolism , Endophytes/isolation & purification , Endophytes/metabolism , Endophytes/genetics , Endophytes/classification , Rosmarinus/chemistry , Rosmarinus/microbiology , Plant Roots/microbiology , Plant Roots/growth & development , Solanum lycopersicum/microbiology , Solanum lycopersicum/growth & development , Fusarium/growth & development , Fusarium/genetics , Fusarium/metabolism , Soil Microbiology , Plant Development , Germination , Indoleacetic Acids/metabolism , Rhizoctonia/growth & development , Rhizoctonia/drug effects , Nitrogen Fixation , Phosphates/metabolism
2.
PeerJ ; 12: e17341, 2024.
Article in English | MEDLINE | ID: mdl-38827281

ABSTRACT

Phosphorus is one of the lowest elements absorbed and utilized by plants in the soil. SPX domain-containing genes family play an important role in plant response to phosphate deficiency signaling pathway, and related to seed development, disease resistance, absorption and transport of other nutrients. However, there are no reports on the mechanism of SPX domain-containing genes in response to phosphorus deficiency in eggplant. In this study, the whole genome identification and functional analysis of SPX domain-containing genes family in eggplant were carried out. Sixteen eggplant SPX domain-containing genes were identified and divided into four categories. Subcellular localization showed that these proteins were located in different cell compartments, including nucleus and membrane system. The expression patterns of these genes in different tissues as well as under phosphate deficiency with auxin were explored. The results showed that SmSPX1, SmSPX5 and SmSPX12 were highest expressed in roots. SmSPX1, SmSPX4, SmSPX5 and SmSPX14 were significantly induced by phosphate deficiency and may be the key candidate genes in response to phosphate starvation in eggplant. Among them, SmSPX1 and SmSPX5 can be induced by auxin under phosphate deficiency. In conclusion, our study preliminary identified the SPX domain genes in eggplant, and the relationship between SPX domain-containing genes and auxin was first analyzed in response to phosphate deficiency, which will provide theoretical basis for improving the absorption of phosphorus in eggplants through molecular breeding technology.


Subject(s)
Gene Expression Regulation, Plant , Plant Proteins , Solanum melongena , Solanum melongena/genetics , Solanum melongena/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Indoleacetic Acids/metabolism , Genome, Plant/genetics , Multigene Family , Phosphorus/metabolism , Phosphorus/deficiency , Genes, Plant , Phosphates/metabolism , Phosphates/deficiency
3.
Mol Biol Rep ; 51(1): 605, 2024 May 03.
Article in English | MEDLINE | ID: mdl-38700570

ABSTRACT

BACKGROUND: Cultivation of Crocus sativus (saffron) faces challenges due to inconsistent flowering patterns and variations in yield. Flowering takes place in a graded way with smaller corms unable to produce flowers. Enhancing the productivity requires a comprehensive understanding of the underlying genetic mechanisms that govern this size-based flowering initiation and commitment. Therefore, samples enriched with non-flowering and flowering apical buds from small (< 6 g) and large (> 14 g) corms were sequenced. METHODS AND RESULTS: Apical bud enriched samples from small and large corms were collected immediately after dormancy break in July. RNA sequencing was performed using Illumina Novaseq 6000 to access the gene expression profiles associated with size dependent flowering. De novo transcriptome assembly and analysis using flowering committed buds from large corms at post-dormancy and their comparison with vegetative shoot primordia from small corms pointed out the major role of starch and sucrose metabolism, Auxin and ABA hormonal regulation. Many genes with known dual responses in flowering development and circadian rhythm like Flowering locus T and Cryptochrome 1 along with a transcript showing homology with small auxin upregulated RNA (SAUR) exhibited induced expression in flowering buds. Thorough prediction of Crocus sativus non-coding RNA repertoire has been carried out for the first time. Enolase was found to be acting as a major hub with protein-protein interaction analysis using Arabidopsis counterparts. CONCLUSION: Transcripts belong to key pathways including phenylpropanoid biosynthesis, hormone signaling and carbon metabolism were found significantly modulated. KEGG assessment and protein-protein interaction analysis confirm the expression data. Findings unravel the genetic determinants driving the size dependent flowering in Crocus sativus.


Subject(s)
Crocus , Flowers , Gene Expression Profiling , Gene Expression Regulation, Plant , Indoleacetic Acids , Meristem , Signal Transduction , Flowers/genetics , Flowers/growth & development , Flowers/metabolism , Crocus/genetics , Crocus/growth & development , Crocus/metabolism , Gene Expression Regulation, Plant/genetics , Indoleacetic Acids/metabolism , Gene Expression Profiling/methods , Meristem/genetics , Meristem/growth & development , Meristem/metabolism , Signal Transduction/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Transcriptome/genetics , Sugars/metabolism , Plant Growth Regulators/metabolism
4.
Antonie Van Leeuwenhoek ; 117(1): 76, 2024 May 05.
Article in English | MEDLINE | ID: mdl-38705910

ABSTRACT

Despite being one of the most abundant elements in soil, phosphorus (P) often becomes a limiting macronutrient for plants due to its low bioavailability, primarily locked away in insoluble organic and inorganic forms. Phosphate solubilizing and mineralizing bacteria, also called phosphobacteria, isolated from P-deficient soils have emerged as a promising biofertilizer alternative, capable of converting these recalcitrant P forms into plant-available phosphates. Three such phosphobacteria strains-Serratia sp. RJAL6, Klebsiella sp. RCJ4, and Enterobacter sp. 198-previously demonstrated their particular strength as plant growth promoters for wheat, ryegrass, or avocado under abiotic stresses and P deficiency. Comparative genomic analysis of their draft genomes revealed several genes encoding key functionalities, including alkaline phosphatases, isonitrile secondary metabolites, enterobactin biosynthesis and genes associated to the production of indole-3-acetic acid (IAA) and gluconic acid. Moreover, overall genome relatedness indexes (OGRIs) revealed substantial divergence between Serratia sp. RJAL6 and its closest phylogenetic neighbours, Serratia nematodiphila and Serratia bockelmanii. This compelling evidence suggests that RJAL6 merits classification as a novel species. This in silico genomic analysis provides vital insights into the plant growth-promoting capabilities and provenance of these promising PSRB strains. Notably, it paves the way for further characterization and potential application of the newly identified Serratia species as a powerful bioinoculant in future agricultural settings.


Subject(s)
Enterobacter , Genome, Bacterial , Genomics , Indoleacetic Acids , Phylogeny , Serratia , Soil Microbiology , Indoleacetic Acids/metabolism , Serratia/genetics , Serratia/isolation & purification , Serratia/metabolism , Serratia/classification , Enterobacter/genetics , Enterobacter/isolation & purification , Enterobacter/classification , Enterobacter/metabolism , Klebsiella/genetics , Klebsiella/metabolism , Klebsiella/isolation & purification , Klebsiella/classification , Plant Development , Soil/chemistry , Plant Growth Regulators/metabolism
5.
Nat Commun ; 15(1): 3875, 2024 May 08.
Article in English | MEDLINE | ID: mdl-38719800

ABSTRACT

The genomes of charophyte green algae, close relatives of land plants, typically do not show signs of developmental regulation by phytohormones. However, scattered reports of endogenous phytohormone production in these organisms exist. We performed a comprehensive analysis of multiple phytohormones in Viridiplantae, focusing mainly on charophytes. We show that auxin, salicylic acid, ethylene and tRNA-derived cytokinins including cis-zeatin are found ubiquitously in Viridiplantae. By contrast, land plants but not green algae contain the trans-zeatin type cytokinins as well as auxin and cytokinin conjugates. Charophytes occasionally produce jasmonates and abscisic acid, whereas the latter is detected consistently in land plants. Several phytohormones are excreted into the culture medium, including auxin by charophytes and cytokinins and salicylic acid by Viridiplantae in general. We note that the conservation of phytohormone biosynthesis and signaling pathways known from angiosperms does not match the capacity for phytohormone biosynthesis in Viridiplantae. Our phylogenetically guided analysis of established algal cultures provides an important insight into phytohormone biosynthesis and metabolism across Streptophyta.


Subject(s)
Cytokinins , Indoleacetic Acids , Phylogeny , Plant Growth Regulators , Plant Growth Regulators/metabolism , Indoleacetic Acids/metabolism , Cytokinins/metabolism , Viridiplantae/metabolism , Viridiplantae/genetics , Ethylenes/metabolism , Oxylipins/metabolism , Salicylic Acid/metabolism , Abscisic Acid/metabolism , Gene Expression Regulation, Plant , Cyclopentanes/metabolism , Biological Evolution , Chlorophyta/metabolism , Chlorophyta/genetics , Signal Transduction
6.
Plant Signal Behav ; 19(1): 2348917, 2024 Dec 31.
Article in English | MEDLINE | ID: mdl-38704856

ABSTRACT

Plants can activate protective and defense mechanisms under biotic and abiotic stresses. Their roots naturally grow in the soil, but when they encounter sunlight in the top-soil layers, they may move away from the light source to seek darkness. Here we investigate the skototropic behavior of roots, which promotes their fitness and survival. Glutamate-like receptors (GLRs) of plants play roles in sensing and responding to signals, but their role in root skototropism is not yet understood. Light-induced tropisms are known to be affected by auxin distribution, mainly determined by auxin efflux proteins (PIN proteins) at the root tip. However, the role of PIN proteins in root skototropism has not been investigated yet. To better understand root skototropism and its connection to the distance between roots and light, we established five distance settings between seedlings and darkness to investigate the variations in root bending tendencies. We compared differences in root skototropic behavior across different expression lines of Arabidopsis thaliana seedlings (atglr3.7 ko, AtGLR3.7 OE, and pin2 knockout) to comprehend their functions. Our research shows that as the distance between roots and darkness increases, the root's positive skototropism noticeably weakens. Our findings highlight the involvement of GLR3.7 and PIN2 in root skototropism.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Plant Roots , Arabidopsis/metabolism , Arabidopsis/genetics , Arabidopsis/physiology , Plant Roots/metabolism , Arabidopsis Proteins/metabolism , Arabidopsis Proteins/genetics , Darkness , Light , Seedlings/metabolism , Indoleacetic Acids/metabolism
7.
Molecules ; 29(9)2024 May 05.
Article in English | MEDLINE | ID: mdl-38731636

ABSTRACT

Plant in vitro cultures can be an effective tool in obtaining desired specialized metabolites. The purpose of this study was to evaluate the effect of light-emitting diodes (LEDs) on phenolic compounds in Rhaponticum carthamoides shoots cultured in vitro. R. carthamoides is an endemic and medicinal plant at risk of extinction due to the massive harvesting of its roots and rhizomes from the natural environment. The shoots were cultured on an agar-solidified and liquid-agitated Murashige and Skoog's medium supplemented with 0.1 mg/L of indole-3-acetic acid (IAA) and 0.5 mg/L of 6-benzyladenine (BA). The effect of the medium and different treatments of LED lights (blue (BL), red (RL), white (WL), and a combination of red and blue (R:BL; 7:3)) on R. carthamoides shoot growth and its biosynthetic potential was observed. Medium type and the duration of LED light exposure did not affect the proliferation rate of shoots, but they altered the shoot morphology and specialized metabolite accumulation. The liquid medium and BL light were the most beneficial for the caffeoylquinic acid derivatives (CQAs) production, shoot growth, and biomass increment. The liquid medium and BL light enhanced the content of the sum of all identified CQAs (6 mg/g DW) about three-fold compared to WL light and control, fluorescent lamps. HPLC-UV analysis confirmed that chlorogenic acid (5-CQA) was the primary compound in shoot extracts regardless of the type of culture and the light conditions (1.19-3.25 mg/g DW), with the highest level under R:BL light. BL and RL lights were equally effective. The abundant component was also 3,5-di-O-caffeoylquinic acid, accompanied by 4,5-di-O-caffeoylquinic acid, a tentatively identified dicaffeoylquinic acid derivative, and a tricaffeoylquinic acid derivative 2, the contents of which depended on the LED light conditions.


Subject(s)
Flavonoids , Light , Plant Shoots , Quinic Acid , Plant Shoots/growth & development , Plant Shoots/metabolism , Plant Shoots/chemistry , Quinic Acid/analogs & derivatives , Quinic Acid/metabolism , Quinic Acid/chemistry , Flavonoids/metabolism , Flavonoids/chemistry , Indoleacetic Acids/metabolism
8.
Curr Microbiol ; 81(7): 189, 2024 May 25.
Article in English | MEDLINE | ID: mdl-38789812

ABSTRACT

The flooding pampa is one of the most important cattle-raising regions in Argentina. In this region, natural pastures are dominated by low-productivity native grass species, which are the main feed for livestock. In this context, previous studies in the region with the subtropical exotic grass Panicum coloratum highlight it as a promising species to improve pasture productivity. Cultivable phosphate solubilizing bacteria (PSB) communities associated to native (Sporobolus indicus) and exotic (Panicum coloratum) forage grasses adapted to alkaline-sodic soils of the flooding pampa were analyzed. PSB represented 2-14% of cultivable rhizobacteria and Box-PCR fingerprinting revealed a high genetic diversity in both rhizospheres. Taxonomic identification by MALDI-TOF showed that PSB populations of P. coloratum and S. indicus rhizospheres are dominated by the phylum Proteobacteria (92,51% and 96,60% respectively) and to a lesser extent (< 10%), by the phyla Actinobacteria and Firmicutes. At the genus level, both PSB populations were dominated by Enterobacter and Pseudomonas. Siderophore production, nitrogen fixation, and indoleacetic acid production were detected in a variety of PSB genera of both plant species. A higher proportion of siderophore and IAA producers were associated to P. coloratum than S. indicus, probably reflecting a greater dependence of the exotic species on rhizospheric microorganisms to satisfy its nutritional requirements in the soils of the flooding pampa. This work provides a novel knowledge about functional groups of bacteria associated to plants given that there are no previous reports dedicated to the characterization of PSB rhizosphere communities of S indicus and P coloratum. Finally, it should be noted that the collection obtained in this study can be useful for the development of bioinputs that allow reducing the use of chemical fertilizers, providing sustainability to pasture production systems for livestock.


Subject(s)
Bacteria , Phosphates , Poaceae , Rhizosphere , Soil Microbiology , Soil , Poaceae/microbiology , Bacteria/classification , Bacteria/genetics , Bacteria/metabolism , Bacteria/isolation & purification , Soil/chemistry , Phosphates/metabolism , Argentina , Animals , Phylogeny , Siderophores/metabolism , Nitrogen Fixation , Indoleacetic Acids/metabolism , Floods , RNA, Ribosomal, 16S/genetics
9.
Ecotoxicol Environ Saf ; 278: 116396, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38696872

ABSTRACT

The success of the sodic soil reclamation using elemental S (S°) depends on the population of the native S° oxidizers. Augmenting the native flora of the sodic soils with effective S° oxidizers can enhance the success of the sodic soil reclamation. Present study reports for the first time the S° oxidation potential of the Sphingomonas olei strain 20UP7 isolated from sodic soils with pHs 9.8 and ECe 3.6 dS m-1. Inoculation with S. olei strain 20UP7 caused 13.0-24.2 % increase in S° oxidation in different sodic soils (pHs 9.1-10.5). It improved the concentration of the Ca2+, Mg2+, PO43- and declined the HCO3- and total alkalinity of the soil solution. This isolate also showed appreciable P and Zn solubilization, indole acetic acid, ammonia, and titratable acidity production in the growth media. It tended to the formation of biofilm around sulphur particles. The PCR amplification with gene-specific primers showed the occurrence of soxA, soxB, and soxY genes with a single band corresponding to length of 850, 460, and 360 base pairs, respectively. The integration of the S. olei strain 20UP7 with S° caused 21.7-25.4 % increase in the rice and wheat yield compared to the soil treated with S° alone. This study concludes that the S. olei, native to high saline-sodic soils can be utilized for improving the sodicity reclamation and plant growth promotion using elemental S based formulations.


Subject(s)
Oxidation-Reduction , Soil Microbiology , Soil , Soil/chemistry , Sulfur/metabolism , Sphingomonas , Hydrogen-Ion Concentration , Biofilms/growth & development , Plant Development/drug effects , Indoleacetic Acids/metabolism , Oryza/microbiology , Oryza/growth & development , Soil Pollutants
10.
BMC Plant Biol ; 24(1): 426, 2024 May 20.
Article in English | MEDLINE | ID: mdl-38769488

ABSTRACT

To alleviate the selenium (Se) stress in fruit trees and improve its accumulation, the effects of exogenous indole-3-acetic acid (IAA) on the growth and Se accumulation of grapevine under Se stress were studied. The application of exogenous IAA increased the biomass of grapevine, and the concentration of exogenous IAA had a regression relationship with the biomass. The root and shoot biomass were the maximum at 60 mg L- 1 IAA, increasing by 15.61% and 23.95%, respectively, compared with the control. Exogenous IAA also increased the photosynthetic pigments and the activities of superoxide dismutase and peroxidase in grapevine. Moreover, exogenous IAA increased the contents of total Se, organic Se, and inorganic Se, and the concentration of exogenous IAA had a regression relationship with the total Se content. The highest contents of root total Se and shoot total Se were accumulated at 90 mg L- 1 IAA, increasing by 29.94% and 55.77% respectively,. In addition, the correlation and path analyses revealed that the carotenoid content and root total Se content were closely associated with the shoot total Se content. Therefore, the application of exogenous IAA can alleviate the stress of Se to grape and promote its uptake and the most effective amount for the uptake of Se is 90 mg L- 1 IAA.


Subject(s)
Indoleacetic Acids , Plant Growth Regulators , Selenium , Vitis , Indoleacetic Acids/metabolism , Selenium/metabolism , Vitis/drug effects , Vitis/growth & development , Vitis/metabolism , Plant Growth Regulators/metabolism , Stress, Physiological , Plant Roots/metabolism , Plant Roots/growth & development , Plant Roots/drug effects , Plant Shoots/metabolism , Plant Shoots/growth & development , Plant Shoots/drug effects , Biomass
11.
Planta ; 259(6): 144, 2024 May 06.
Article in English | MEDLINE | ID: mdl-38709333

ABSTRACT

MAIN CONCLUSION: Silicon application mitigates phosphate deficiency in barley through an interplay with auxin and nitric oxide, enhancing growth, photosynthesis, and redox balance, highlighting the potential of silicon as a fertilizer for overcoming nutritional stresses. Silicon (Si) is reported to attenuate nutritional stresses in plants, but studies on the effect of Si application to plants grown under phosphate (Pi) deficiency are still very scarce, especially in barley. Therefore, the present work was undertaken to investigate the potential role of Si in mitigating the adverse impacts of Pi deficiency in barley Hordeum vulgare L. (var. BH902). Further, the involvement of two key regulatory signaling molecules--auxin and nitric oxide (NO)--in Si-induced tolerance against Pi deficiency in barley was tested. Morphological attributes, photosynthetic parameters, oxidative stress markers (O2·-, H2O2, and MDA), antioxidant system (enzymatic--APX, CAT, SOD, GR, DHAR, MDHAR as well as non-enzymatic--AsA and GSH), NO content, and proline metabolism were the key traits that were assessed under different treatments. The P deficiency distinctly declined growth of barley seedlings, which was due to enhancement in oxidative stress leading to inhibition of photosynthesis. These results were also in parallel with an enhancement in antioxidant activity, particularly SOD and CAT, and endogenous proline level and its biosynthetic enzyme (P5CS). The addition of Si exhibited beneficial effects on barley plants grown in Pi-deficient medium as reflected in increased growth, photosynthetic activity, and redox balance through the regulation of antioxidant machinery particularly ascorbate-glutathione cycle. We noticed that auxin and NO were also found to be independently participating in Si-mediated improvement of growth and other parameters in barley roots under Pi deficiency. Data of gene expression analysis for PHOSPHATE TRANSPORTER1 (HvPHT1) indicate that Si helps in increasing Pi uptake as per the need of Pi-deficient barley seedlings, and also auxin and NO both appear to help Si in accomplishing this task probably by inducing lateral root formation. These results are suggestive of possible application of Si as a fertilizer to correct the negative effects of nutritional stresses in plants. Further research at genetic level to understand Si-induced mechanisms for mitigating Pi deficiency can be helpful in the development of new varieties with improved tolerance against Pi deficiency, especially for cultivation in areas with Pi-deficient soils.


Subject(s)
Hordeum , Indoleacetic Acids , Nitric Oxide , Oxidative Stress , Phosphates , Photosynthesis , Plant Roots , Silicon , Hordeum/metabolism , Hordeum/genetics , Hordeum/drug effects , Hordeum/growth & development , Hordeum/physiology , Silicon/pharmacology , Silicon/metabolism , Indoleacetic Acids/metabolism , Phosphates/deficiency , Phosphates/metabolism , Nitric Oxide/metabolism , Plant Roots/metabolism , Plant Roots/growth & development , Plant Roots/drug effects , Plant Roots/genetics , Photosynthesis/drug effects , Antioxidants/metabolism , Seedlings/growth & development , Seedlings/metabolism , Seedlings/genetics , Seedlings/drug effects , Seedlings/physiology
12.
Int J Mol Sci ; 25(9)2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38731974

ABSTRACT

Tomato (Solanum lycopersicum) breeding for improved fruit quality emphasizes selecting for desirable taste and characteristics, as well as enhancing disease resistance and yield. Seed germination is the initial step in the plant life cycle and directly affects crop productivity and yield. ERECTA (ER) is a receptor-like kinase (RLK) family protein known for its involvement in diverse developmental processes. We characterized a Micro-Tom EMS mutant designated as a knock-out mutant of sler. Our research reveals that SlER plays a central role in controlling critical traits such as inflorescence development, seed number, and seed germination. The elevation in auxin levels and alterations in the expression of ABSCISIC ACID INSENSITIVE 3 (ABI3) and ABI5 in sler seeds compared to the WT indicate that SlER modulates seed germination via auxin and abscisic acid (ABA) signaling. Additionally, we detected an increase in auxin content in the sler ovary and changes in the expression of auxin synthesis genes YUCCA flavin monooxygenases 1 (YUC1), YUC4, YUC5, and YUC6 as well as auxin response genes AUXIN RESPONSE FACTOR 5 (ARF5) and ARF7, suggesting that SlER regulates fruit development via auxin signaling.


Subject(s)
Fruit , Gene Expression Regulation, Plant , Germination , Indoleacetic Acids , Plant Proteins , Seeds , Signal Transduction , Solanum lycopersicum , Solanum lycopersicum/genetics , Solanum lycopersicum/growth & development , Solanum lycopersicum/metabolism , Indoleacetic Acids/metabolism , Seeds/growth & development , Seeds/metabolism , Seeds/genetics , Fruit/growth & development , Fruit/metabolism , Fruit/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Abscisic Acid/metabolism
13.
Int J Mol Sci ; 25(9)2024 Apr 27.
Article in English | MEDLINE | ID: mdl-38732009

ABSTRACT

The interaction between light and phytohormones is crucial for plant growth and development. The practice of supplementing light at night during winter to promote pitaya flowering and thereby enhance yield has been shown to be crucial and widely used. However, it remains unclear how supplemental winter light regulates phytohormone levels to promote flowering in pitaya. In this study, through analyzing the transcriptome data of pitaya at four different stages (NL, L0, L1, L2), we observed that differentially expressed genes (DEGs) were mainly enriched in the phytohormone biosynthesis pathway. We further analyzed the data and found that cytokinin (CK) content first increased at the L0 stage and then decreased at the L1 and L2 stages after supplemental light treatment compared to the control (NL). Gibberellin (GA), auxin (IAA), salicylic acid (SA), and jasmonic acid (JA) content increased during the formation of flower buds (L1, L2 stages). In addition, the levels of GA, ethylene (ETH), IAA, and abscisic acid (ABA) increased in flower buds after one week of development (L2f). Our results suggest that winter nighttime supplemental light can interact with endogenous hormone signaling in pitaya, particularly CK, to regulate flower bud formation. These results contribute to a better understanding of the mechanism of phytohormone interactions during the induction of flowering in pitaya under supplemental light in winter.


Subject(s)
Flowers , Gene Expression Regulation, Plant , Light , Plant Growth Regulators , Seasons , Plant Growth Regulators/metabolism , Flowers/metabolism , Flowers/growth & development , Indoleacetic Acids/metabolism , Cytokinins/metabolism , Gibberellins/metabolism , Ipomoea nil/metabolism , Ipomoea nil/genetics , Transcriptome , Gene Expression Profiling , Cyclopentanes , Oxylipins
14.
Int J Mol Sci ; 25(9)2024 Apr 23.
Article in English | MEDLINE | ID: mdl-38731804

ABSTRACT

The mesocotyl is of great significance in seedling emergence and in responding to biotic and abiotic stress in maize. The NAM, ATAF, and CUC2 (NAC) transcription factor family plays an important role in maize growth and development; however, its function in the elongation of the maize mesocotyl is still unclear. In this study, we found that the mesocotyl length in zmnac17 loss-of-function mutants was lower than that in the B73 wild type. By using transcriptomic sequencing technology, we identified 444 differentially expressed genes (DEGs) between zmnac17-1 and B73, which were mainly enriched in the "tryptophan metabolism" and "antioxidant activity" pathways. Compared with the control, the zmnac17-1 mutants exhibited a decrease in the content of indole acetic acid (IAA) and an increase in the content of reactive oxygen species (ROS). Our results provide preliminary evidence that ZmNAC17 regulates the elongation of the maize mesocotyl.


Subject(s)
Gene Expression Regulation, Plant , Indoleacetic Acids , Plant Proteins , Reactive Oxygen Species , Zea mays , Zea mays/genetics , Zea mays/metabolism , Zea mays/growth & development , Indoleacetic Acids/metabolism , Reactive Oxygen Species/metabolism , Plant Proteins/metabolism , Plant Proteins/genetics , Transcription Factors/metabolism , Transcription Factors/genetics , Biosynthetic Pathways , Gene Expression Profiling , Mutation , Transcriptome
15.
Arch Microbiol ; 206(6): 282, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38806859

ABSTRACT

Plant growth-promoting rhizobacteria (PGPR) offer an eco-friendly alternative to agrochemicals for better plant growth and development. Here, we evaluated the plant growth promotion abilities of actinobacteria isolated from the tea (Camellia sinensis) rhizosphere of Darjeeling, India. 16 S rRNA gene ribotyping of 28 isolates demonstrated the presence of nine different culturable actinobacterial genera. Assessment of the in vitro PGP traits revealed that Micrococcus sp. AB420 exhibited the highest level of phosphate solubilization (i.e., 445 ± 2.1 µg/ml), whereas Kocuria sp. AB429 and Brachybacterium sp. AB440 showed the highest level of siderophore (25.8 ± 0.1%) and IAA production (101.4 ± 0.5 µg/ml), respectively. Biopriming of maize seeds with the individual actinobacterial isolate revealed statistically significant growth in the treated plants compared to controls. Among them, treatment with Paenarthrobacter sp. AB416 and Brachybacterium sp. AB439 exhibited the highest shoot and root length. Biopriming has also triggered significant enzymatic and non-enzymatic antioxidative defense reactions in maize seedlings both locally and systematically, providing a critical insight into their possible role in the reduction of reactive oxygen species (ROS) burden. To better understand the role of actinobacterial isolates in the modulation of plant defense, three selected actinobacterial isolates, AB426 (Brevibacterium sp.), AB427 (Streptomyces sp.), and AB440 (Brachybacterium sp.) were employed to evaluate the dynamics of induced systemic resistance (ISR) in maize. The expression profile of five key genes involved in SA and JA pathways revealed that bio-priming with actinobacteria (Brevibacterium sp. AB426 and Brachybacterium sp. AB440) preferably modulates the JA pathway rather than the SA pathway. The infection studies in bio-primed maize plants resulted in a delay in disease progression by the biotrophic pathogen Ustilago maydis in infected maize plants, suggesting the positive efficacy of bio-priming in aiding plants to cope with biotic stress. Conclusively, this study unravels the intrinsic mechanisms of PGPR-mediated ISR dynamics in bio-primed plants, offering a futuristic application of these microorganisms in the agricultural fields as an eco-friendly alternative.


Subject(s)
Actinobacteria , Camellia sinensis , Rhizosphere , Seeds , Soil Microbiology , Zea mays , Zea mays/microbiology , Zea mays/growth & development , Zea mays/metabolism , Actinobacteria/genetics , Actinobacteria/isolation & purification , Actinobacteria/metabolism , Seeds/microbiology , Seeds/growth & development , Seeds/metabolism , Camellia sinensis/microbiology , Camellia sinensis/growth & development , Camellia sinensis/genetics , Camellia sinensis/metabolism , India , Plant Roots/microbiology , Plant Roots/growth & development , Signal Transduction , RNA, Ribosomal, 16S/genetics , Plant Growth Regulators/metabolism , Indoleacetic Acids/metabolism , Siderophores/metabolism
16.
Nutrients ; 16(10)2024 May 19.
Article in English | MEDLINE | ID: mdl-38794769

ABSTRACT

Several metabolites of the essential amino acid tryptophan have emerged as key players in gut homeostasis through different cellular pathways, particularly through metabolites which can activate the aryl hydrocarbon receptor (AHR). This study aimed to map the metabolism of tryptophan in early life and investigate the effects of specific metabolites on epithelial cells and barrier integrity. Twenty-one tryptophan metabolites were measured in the feces of full-term and preterm neonates as well as in human milk and formula. The ability of specific AHR metabolites to regulate cytokine-induced IL8 expression and maintain barrier integrity was assessed in Caco2 cells and human fetal organoids (HFOs). Overall, higher concentrations of tryptophan metabolites were measured in the feces of full-term neonates compared to those of preterm ones. Within AHR metabolites, indole-3-lactic acid (ILA) was significantly higher in the feces of full-term neonates. Human milk contained different levels of several tryptophan metabolites compared to formula. Particularly, within the AHR metabolites, indole-3-sulfate (I3S) and indole-3-acetic acid (IAA) were significantly higher compared to formula. Fecal-derived ILA and milk-derived IAA were capable of reducing TNFα-induced IL8 expression in Caco2 cells and HFOs in an AHR-dependent manner. Furthermore, fecal-derived ILA and milk-derived IAA significantly reduced TNFα-induced barrier disruption in HFOs.


Subject(s)
Feces , Milk, Human , Receptors, Aryl Hydrocarbon , Tryptophan , Humans , Receptors, Aryl Hydrocarbon/metabolism , Milk, Human/metabolism , Milk, Human/chemistry , Caco-2 Cells , Tryptophan/metabolism , Infant, Newborn , Feces/chemistry , Indoleacetic Acids/metabolism , Female , Infant, Premature , Interleukin-8/metabolism , Indoles/pharmacology , Infant Formula , Organoids/metabolism , Basic Helix-Loop-Helix Transcription Factors
17.
J Plant Physiol ; 297: 154259, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38705079

ABSTRACT

Management of the plant microbiome may help support food needs for the human population. Bacteria influence plants through enhancing nutrient uptake, metabolism, photosynthesis, biomass production and/or reinforcing immunity. However, information into how these microbes behave under different growth conditions is missing. In this work, we tested how carbon supplements modulate the interaction of Pseudomonas chlororaphis with Arabidopsis thaliana. P. chlororaphis streaks strongly repressed primary root growth, lateral root formation and ultimately, biomass production. Noteworthy, increasing sucrose availability into the media from 0 to 2.4% restored plant growth and promoted lateral root formation in bacterized seedlings. This effect could not be observed by supplementing sucrose to leaves only, indicating that the interaction was strongly modulated by bacterial access to sugar. Total phenazine content decreased in the bacteria grown in high (2.4%) sucrose medium, and conversely, the expression of phzH and pslA genes were diminished by sugar supply. Pyocyanin antagonized the promoting effects of sucrose in lateral root formation and biomass production in inoculated seedlings, indicating that this virulence factor accounts for growth repression during the plant-bacterial interaction. Defence reporter transgenes PR-1::GUS and LOX2::GUS were induced in leaves, while the expression of the auxin-inducible, synthetic reporter gene DR5::GUS was enhanced in the roots of bacterized seedlings at low and high sucrose treatments, which suggests that growth/defence trade-offs in plants are critically modulated by P. chlororaphis. Collectively, our data suggest that bacterial carbon nutrition controls the outcome of the relation with plants.


Subject(s)
Arabidopsis , Indoleacetic Acids , Phenazines , Plant Roots , Pseudomonas chlororaphis , Sucrose , Sucrose/metabolism , Arabidopsis/microbiology , Arabidopsis/metabolism , Arabidopsis/genetics , Plant Roots/microbiology , Plant Roots/metabolism , Pseudomonas chlororaphis/metabolism , Phenazines/metabolism , Indoleacetic Acids/metabolism
18.
BMC Microbiol ; 24(1): 165, 2024 May 15.
Article in English | MEDLINE | ID: mdl-38745279

ABSTRACT

Globally, drought stress poses a significant threat to crop productivity. Improving the drought tolerance of crops with microbial biostimulants is a sustainable strategy to meet a growing population's demands. This research aimed to elucidate microbial biostimulants' (Plant Growth Promoting Rhizobacteria) role in alleviating drought stress in oil-seed crops. In total, 15 bacterial isolates were selected for drought tolerance and screened for plant growth-promoting (PGP) attributes like phosphate solubilization and production of indole-3-acetic acid, siderophore, hydrogen cyanide, ammonia, and exopolysaccharide. This research describes two PGPR strains: Acinetobacter calcoaceticus AC06 and Bacillus amyloliquefaciens BA01. The present study demonstrated that these strains (AC06 and BA01) produced abundant osmolytes under osmotic stress, including proline (2.21 and 1.75 µg ml- 1), salicylic acid (18.59 and 14.21 µg ml- 1), trehalose (28.35 and 22.74 µg mg- 1 FW) and glycine betaine (11.35 and 7.74 mg g- 1) respectively. AC06 and BA01 strains were further evaluated for their multifunctional performance by inoculating in Arachis hypogaea L. (Groundnut) under mild and severe drought regimes (60 and 40% Field Capacity). Inoculation with microbial biostimulants displayed distinct osmotic-adjustment abilities of the groundnut, such as growth parameters, plant biomass, photosynthetic pigments, relative water content, proline, and soluble sugar in respective to control during drought. On the other hand, plant sensitivity indexes such as electrolyte leakage and malondialdehyde (MDA) contents were decreased as well as cooperatively conferred plant drought tolerance by induced alterations in stress indicators such as catalase (CAT), ascorbate peroxidase (APX), and superoxide dismutase (SOD). Thus, Acinetobacter sp. AC06 and Bacillus sp. BA01 can be considered as osmolyte producing microbial biostimulants to simultaneously induce osmotic tolerance and metabolic changes in groundnuts under drought stress.


Subject(s)
Arachis , Droughts , Stress, Physiological , Arachis/microbiology , Arachis/growth & development , Arachis/metabolism , Arachis/physiology , Proline/metabolism , Bacillus amyloliquefaciens/metabolism , Bacillus amyloliquefaciens/physiology , Soil Microbiology , Osmotic Pressure , Betaine/metabolism , Indoleacetic Acids/metabolism , Salicylic Acid/metabolism , Acinetobacter/metabolism , Acinetobacter/growth & development , Acinetobacter/physiology , Hydrogen Cyanide/metabolism , Trehalose/metabolism
19.
BMC Plant Biol ; 24(1): 482, 2024 May 31.
Article in English | MEDLINE | ID: mdl-38822275

ABSTRACT

Anabasis aphylla (A. aphylla), a species of the Amaranthaceae family, is widely distributed in northwestern China and has high pharmacological value and ecological functions. However, the growth characteristics are poorly understood, impeding its industrial development for biopesticide development. Here, we explored the regenerative capacity of A. aphylla. To this end, different lengths of the secondary branches of perennial branches were mowed at the end of March before sprouting. The four treatments were no mowing (M0) and mowing 1/3, 2/3, and the entire length of the secondary branches of perennial branches (M1-M3, respectively). Next, to evaluate the compensatory growth after mowing, new assimilate branches' related traits were recorded every 30 days, and the final biomass was recorded. The mowed plants showed a greater growth rate of assimilation branches than un-mowed plants. Additionally, with the increasing mowing degree, the growth rate and the final biomass of assimilation branches showed a decreasing trend, with the greatest growth rate and final biomass in response to M1. To evaluate the mechanism of the compensatory growth after mowing, a combination of dynamic (0, 1, 5, and 8 days after mowing) plant hormone-targeted metabolomics and transcriptomics was performed for the M0 and M1 treatment. Overall, 26 plant hormone metabolites were detected, 6 of which significantly increased after mowing compared with control: Indole-3-acetyl-L-valine methyl ester, Indole-3-carboxylic acid, Indole-3-carboxaldehyde, Gibberellin A24, Gibberellin A4, and cis (+)-12-oxo-phytodienoic acid. Additionally, 2,402 differentially expressed genes were detected between the mowed plants and controls. By combining clustering analysis based on expression trends after mowing and gene ontology analysis of each cluster, 18 genes related to auxin metabolism were identified, 6 of which were significantly related to auxin synthesis. Our findings suggest that appropriate mowing can promote A. aphylla growth, regulated by the auxin metabolic pathway, and lays the foundation for the development of the industrial value of A. aphylla.


Subject(s)
Indoleacetic Acids , Indoleacetic Acids/metabolism , Plant Growth Regulators/metabolism , Metabolic Networks and Pathways , Gene Expression Regulation, Plant , Transcriptome
20.
Sci Rep ; 14(1): 12189, 2024 05 28.
Article in English | MEDLINE | ID: mdl-38806526

ABSTRACT

In the present study, ten (10) selected bacteria isolated from chasmophytic wild Chenopodium were evaluated for alleviation of drought stress in chickpea. All the bacterial cultures were potential P, K and Zn solubilizer. About 50% of the bacteria could produce Indole-3-acetic acid (IAA) and 1-aminocyclopropane-1-carboxylate (ACC) deaminase. The bacteria showed wide range of tolerance towards pH, salinity, temperature and osmotic stress. Bacillus paralicheniformis L38, Pseudomonas sp. LN75, Enterobacter hormachei subsp. xiangfengensis LJ89, B. paramycoides L17 and Micrococcus luteus LA9 significantly improved growth and nutrient (N, P, K, Fe and Zn) content in chickpea under water stress during a green house experiment conducted following a completely randomized design (CRD). Application of Microbacterium imperiale LJ10, B. stercoris LN74, Pseudomonas sp. LN75, B. paralicheniformis L38 and E. hormachei subsp. xiangfengensis LJ89 reduced the antioxidant enzymes under water stress. During field experiments conducted following randomized block design (RBD), all the bacterial inoculations improved chickpea yield under water stress. Highest yield (1363 kg ha-1) was obtained in plants inoculated with Pseudomonas sp. LN75. Pseudomonas sp. LN75, B. paralicheniformis L38 and E. hormachei subsp. xiangfengensis LJ89 have potential as microbial stimulants to alleviate the water stress in chickpea. To the best of our knowledge this is the first report of using chasmophyte associated bacteria for alleviation of water stress in a crop plant.


Subject(s)
Cicer , Droughts , Stress, Physiological , Cicer/microbiology , Cicer/physiology , Cicer/growth & development , Bacteria/metabolism , Indoleacetic Acids/metabolism , Nutrients/metabolism , Carbon-Carbon Lyases/metabolism , Enterobacter/physiology , Enterobacter/metabolism , Pseudomonas/physiology , Antioxidants/metabolism
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