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1.
PLoS One ; 15(10): e0240290, 2020.
Article in English | MEDLINE | ID: mdl-33031421

ABSTRACT

Highly pathogenic (HPAI) strains emerge from their low pathogenic (LPAI) precursors and cause severe disease in poultry with enormous economic losses, and zoonotic potential. Understanding the mechanisms involved in HPAI emergence is thus an important goal for risk assessments. In this study ostrich-origin H5N2 and H7N1 LPAI progenitor viruses were serially passaged seventeen times in 14-day old embryonated chicken eggs and Ion Torrent ultra-deep sequencing was used to monitor the incremental changes in the consensus genome sequences. Both virus strains increased in virulence with successive passages, but the H7N1 virus attained a virulent phenotype sooner. Mutations V63M, E228V and D272G in the HA protein, Q357K in the nucleoprotein (NP) and H155P in the neuraminidase protein correlated with the increased pathogenicity of the H5N2 virus; whereas R584H and L589I substitutions in the polymerase B2 protein, A146T and Q220E in HA plus D231N in the matrix 1 protein correlated with increased pathogenicity of the H7N1 virus in embryos. Enzymatic cleavage of HA protein is the critical virulence determinant, and HA cleavage site motifs containing multibasic amino acids were detected at the sub-consensus level. The motifs PQERRR/GLF and PQRERR/GLF were first detected in passages 11 and 15 respectively of the H5N2 virus, and in the H7N1 virus the motifs PELPKGKK/GLF and PELPKRR/GLF were detected as early as passage 7. Most significantly, a 13 nucleotide insert of unknown origin was identified at passage 6 of the H5N2 virus, and at passage 17 a 42 nucleotide insert derived from the influenza NP gene was identified. This is the first report of non-homologous recombination at the HA cleavage site in an H5 subtype virus. This study provides insights into how HPAI viruses emerge from low pathogenic precursors and demonstrated the pathogenic potential of H5N2 and H7N1 strains that have not yet been implicated in HPAI outbreaks.


Subject(s)
Influenza A Virus, H5N2 Subtype/isolation & purification , Influenza A Virus, H7N1 Subtype/isolation & purification , Animals , Chick Embryo , Consensus Sequence , High-Throughput Nucleotide Sequencing , Homologous Recombination , Influenza A Virus, H5N2 Subtype/genetics , Influenza A Virus, H5N2 Subtype/physiology , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/physiology , Serial Passage
2.
Vaccine ; 38(3): 416-422, 2020 01 16.
Article in English | MEDLINE | ID: mdl-31735501

ABSTRACT

The immunization of poultry where H5 and H7 influenza viruses (IVs) are endemic is one of the strategies to prevent unexpected zoonoses. Our group has been focused on conserved HA-epitopes as potential vaccine candidates to obtain multivalent immune responses against distinct IV subtypes. In this study, two conserved epitopes (NG-34 and CS-17) fused to flagellin were produced in a Baculovirus platform based on Trichoplusia ni larvae as living biofactories. Soluble extracts obtained from larvae expressing "flagellin-NG34/CS17 antigen" were used to immunize chickens and the efficacy of the vaccine was evaluated against a heterologous H7N1 HPAIV challenge in chickens. The flagellin-NG34/CS17 vaccine protected the vaccinated chickens and blocked viral shedding orally and cloacally. Furthermore, no apparent clinical signs were monitored in 10/12 vaccinated individuals. The mechanism of protection conferred is under investigation.


Subject(s)
Flagellin/administration & dosage , Granulovirus , Hemagglutinin Glycoproteins, Influenza Virus/administration & dosage , Influenza A Virus, H7N1 Subtype , Influenza in Birds/prevention & control , Administration, Intranasal , Amino Acid Sequence , Animals , Chickens , Dogs , Flagellin/immunology , Granulovirus/immunology , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Immunization/methods , Influenza A Virus, H7N1 Subtype/physiology , Influenza Vaccines/administration & dosage , Influenza Vaccines/immunology , Influenza in Birds/immunology , Larva/immunology , Madin Darby Canine Kidney Cells , Zoonoses/immunology , Zoonoses/prevention & control
3.
Emerg Microbes Infect ; 7(1): 70, 2018 Apr 25.
Article in English | MEDLINE | ID: mdl-29691394

ABSTRACT

Surveillance of wild aquatic birds and free-range domestic ducks in the Tanguar Haor wetlands in Bangladesh has identified influenza virus subtypes H3N6, H7N1, H7N5, H7N9, and H15N9. Molecular characterization of these viruses indicates their contribution to the genesis of new genotypes of H5N1 influenza viruses from clade 2.3.2.1a that are dominant in poultry markets in Bangladesh as well as to the genesis of the highly pathogenic H5N8 virus currently causing disease outbreaks in domestic poultry in Europe and the Middle East. Therefore, we studied the antigenicity, replication, and pathogenicity of influenza viruses isolated from Tanguar Haor in the DBA/2J mouse model. All viruses replicated in the lung without prior mammalian adaptation, and H7N1 and H7N9 viruses caused 100% and 60% mortality, respectively. H7N5 viruses replicated only in the lungs, whereas H7N1 and H7N9 viruses also replicated in the heart, liver, and brain. Replication and transmission studies in mallard ducks showed that H7N1 and H7N9 viruses replicated in ducks without clinical signs of disease and shed at high titers from the cloaca of infected and contact ducks, which could facilitate virus transmission and spread. Our results indicate that H7 avian influenza viruses from free-range ducks can replicate in mammals, cause severe disease, and be efficiently transmitted to contact ducks. Our study highlights the role of free-range ducks in the spread of influenza viruses to other species in live poultry markets and the potential for these viruses to infect and cause disease in mammals.


Subject(s)
Animals, Wild/virology , Ducks/virology , Influenza A virus/genetics , Influenza A virus/pathogenicity , Mammals/virology , Virus Replication , Animals , Bangladesh/epidemiology , Disease Outbreaks/veterinary , Epidemiological Monitoring , Europe/epidemiology , Genotype , Humans , Influenza A Virus, H5N1 Subtype/isolation & purification , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza A Virus, H5N1 Subtype/physiology , Influenza A Virus, H7N1 Subtype/isolation & purification , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza A Virus, H7N1 Subtype/physiology , Influenza A Virus, H7N9 Subtype/isolation & purification , Influenza A Virus, H7N9 Subtype/pathogenicity , Influenza A Virus, H7N9 Subtype/physiology , Influenza A virus/classification , Influenza A virus/physiology , Influenza in Birds/epidemiology , Influenza in Birds/transmission , Influenza in Birds/virology , Influenza, Human/epidemiology , Mice , Middle East/epidemiology , Orthomyxoviridae Infections/epidemiology , Orthomyxoviridae Infections/veterinary , Orthomyxoviridae Infections/virology , Poultry Diseases/epidemiology , Poultry Diseases/transmission , Poultry Diseases/virology
4.
Vaccine ; 36(22): 3101-3111, 2018 05 24.
Article in English | MEDLINE | ID: mdl-28571695

ABSTRACT

The influenza vaccine manufacturing industry is looking for production cell lines that are easily scalable, highly permissive to multiple viruses, and more effective in term of viral productivity. One critical characteristic of such cell lines is their ability to grow in suspension, in serum free conditions and at high cell densities. Influenza virus causing severe epidemics both in human and animals is an important threat to world healthcare. The repetitive apparition of influenza pandemic outbreaks in the last 20years explains that manufacturing sector is still looking for more effective production processes to replace/supplement embryonated egg-based process. Cell-based production strategy, with a focus on avian cell lines, is one of the promising solutions. Three avian cell lines, namely duck EB66®cells (Valneva), duck AGE.CR® cells (Probiogen) and quail QOR/2E11 cells (Baxter), are now competing with traditional mammalian cell platforms (Vero and MDCK cells) used for influenza vaccine productions and are currently at advance stage of commercial development for the manufacture of influenza vaccines. The DuckCelt®-T17 cell line presented in this work is a novel avian cell line developed by Transgene. This cell line was generated from primary embryo duck cells with the constitutive expression of the duck telomerase reverse transcriptase (dTERT). The DuckCelt®-T17 cells were able to grow in batch suspension cultures and serum-free conditions up to 6.5×106cell/ml and were easily scaled from 10ml up to 3l bioreactor. In the present study, DuckCelt®-T17 cell line was tested for its abilities to produce various human, avian and porcine influenza strains. Most of the viral strains were produced at significant infectious titers (>5.8 log TCID50/ml) with optimization of the infection conditions. Human strains H1N1 and H3N2, as well as all the avian strains tested (H5N2, H7N1, H3N8, H11N9, H12N5) were the most efficiently produced with highest titre reached of 9.05 log TCID50/ml for A/Panama/2007/99 influenza H3N2. Porcine strains were also greatly rescued with titres from 4 to 7 log TCID50/ml depending of the subtypes. Interestingly, viral kinetics showed maximal titers reached at 24h post-infection for most of the strains, allowing early harvest time (Time Of Harvest: TOH). The B strains present specific production kinetics with a delay of 24h before reaching the maximal viral particle release. Process optimization on H1N1 2009 human pandemic strain allowed identifying best operating conditions for production (MOI, trypsin concentration, cell density at infection) allowing improving the production level by 2 log. Our results suggest that the DuckCelt®-T17 cell line is a very promising platform for industrial production of influenza viruses and particularly for avian viral strains.


Subject(s)
Cell Culture Techniques/methods , Cell Line , Orthomyxoviridae/growth & development , Virus Cultivation/methods , Virus Replication , Animals , Bioreactors , Ducks , Influenza A Virus, H1N1 Subtype/growth & development , Influenza A Virus, H1N1 Subtype/physiology , Influenza A Virus, H3N2 Subtype/growth & development , Influenza A Virus, H3N2 Subtype/physiology , Influenza A Virus, H3N8 Subtype/growth & development , Influenza A Virus, H3N8 Subtype/physiology , Influenza A Virus, H5N2 Subtype/growth & development , Influenza A Virus, H5N2 Subtype/physiology , Influenza A Virus, H7N1 Subtype/growth & development , Influenza A Virus, H7N1 Subtype/physiology , Influenza Vaccines , Orthomyxoviridae/physiology
5.
Virus Res ; 238: 49-62, 2017 06 15.
Article in English | MEDLINE | ID: mdl-28579356

ABSTRACT

Nuclear exportation of influenza ribonucleoprotein is a vital step in viral replication cycle. In this study a particular H7N1 (A/ostrich/Zimbabwe/222-E3/1996) virus showed exclusively nuclear localization of the viral nucleoprotein (NP) only in human cell lines but not in cell lines of other species suggesting a human-specific nuclear exportation defect. After 10 passages in human lung cells, an adapted strain (H7N1:P10) could efficiently replicate and export viral NP in human cells. Mutations in the NP and matrix M1 gene at position 297 and 227, respectively, were found to rescue the defect. While the NP mutant showed a comparable ratio of total to NP-associated negative-sense RNA in the cytoplasm as compared to the wild type, the M1 mutant showed an increase in free negative-sense RNA in the cytoplasm. These indicated that the NP mutation might cause a nuclear export defect, whereas the M1 mutation might cause a defect in ribonucleoprotein assembly step.


Subject(s)
Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/physiology , Mutation , RNA-Binding Proteins/genetics , Viral Core Proteins/genetics , Viral Matrix Proteins/genetics , Virus Assembly , Virus Replication , Adaptation, Biological , Animals , Biological Transport , Cells, Cultured , Humans , Mutant Proteins/genetics , Mutant Proteins/metabolism , Nucleocapsid Proteins , RNA-Binding Proteins/metabolism , Serial Passage , Viral Core Proteins/metabolism , Viral Matrix Proteins/metabolism
6.
Virulence ; 7(5): 546-57, 2016 07 03.
Article in English | MEDLINE | ID: mdl-26981790

ABSTRACT

Highly pathogenic (HP) avian influenza viruses (AIV) evolve from low pathogenic (LP) precursors after circulation in poultry by reassortment and/or single mutations in different gene segments including that encoding NS1. The carboxyl terminal end (CTE) of NS1 exhibits deletions between amino acid 202 and 230 with still unknown impact on virulence of AIV in chickens. In this study, NS1 protein sequences of all AIV subtypes in birds from 1902 to 2015 were analyzed to study the prevalence and distribution of CTE truncation (ΔCTE). Thirteen different ΔCTE forms were observed in NS1 proteins from 11 HA and 8 NA subtypes with high prevalences in H9, H7, H6 and H10 and N9, N2, N6 and N1 subtypes particularly in chickens and minor poultry species. With 88% NS217 lacking amino acids 218-230 was the most common ΔCTE form followed by NS224 (3.6%). NS217 was found in 10 and 8 different HA and NA subtypes, respectively, whereas NS224 was detected exclusively in the Italian HPAIV H7N1 suggesting relevance for virulence. To test this assumption, 3 recombinant HPAIV H7N1 were constructed carrying wild-type HP NS1 (Hp-NS224), NS1 with extended CTE (Hp-NS230) or NS1 from LPAIV H7N1 (Hp-NSLp), and tested in-vitro and in-vivo. Extension of CTE in Hp NS1 significantly decreased virus replication in chicken embryo kidney cells. Truncation in the NS1 decreased the tropism of Hp-NS224 to the endothelium, central nervous system and respiratory tract epithelium without significant difference in virulence in chickens. This study described the variable forms of ΔCTE in NS1 and indicated that CTE is not an essential virulence determinant particularly for the Italian HPAIV H7N1 but may be a host-adaptation marker required for efficient virus replication.


Subject(s)
Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza A virus/genetics , Influenza A virus/pathogenicity , Influenza in Birds/virology , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/genetics , Adaptation, Biological , Animals , Central Nervous System/virology , Chickens , Influenza A Virus, H7N1 Subtype/physiology , Influenza A virus/physiology , Prevalence , Reassortant Viruses/genetics , Respiratory Mucosa/virology , Sequence Analysis, Protein , Viral Tropism , Virulence Factors/genetics , Virus Replication
7.
Vet Res ; 46: 51, 2015 May 13.
Article in English | MEDLINE | ID: mdl-25963535

ABSTRACT

The study of influenza type A (IA) infections in wild mammals populations is a critical gap in our knowledge of how IA viruses evolve in novel hosts that could be in close contact with avian reservoir species and other wild animals. The aim of this study was to evaluate the susceptibility to infection, the nasal shedding and the transmissibility of the H7N1 and H5N1 highly pathogenic avian influenza (HPAI) viruses in the bank vole (Myodes glareolus), a wild rodent common throughout Europe and Asia. Two out of 24 H5N1-infected voles displayed evident respiratory distress, while H7N1-infected voles remained asymptomatic. Viable virus was isolated from nasal washes collected from animals infected with both HPAI viruses, and extra-pulmonary infection was confirmed in both experimental groups. Histopathological lesions were evident in the respiratory tract of infected animals, although immunohistochemistry positivity was only detected in lungs and trachea of two H7N1-infected voles. Both HPAI viruses were transmitted by direct contact, and seroconversion was confirmed in 50% and 12.5% of the asymptomatic sentinels in the H7N1 and H5N1 groups, respectively. Interestingly, viable virus was isolated from lungs and nasal washes collected from contact sentinels of both groups. The present study demonstrated that two non-rodent adapted HPAI viruses caused asymptomatic infection in bank voles, which shed high amounts of the viruses and were able to infect contact voles. Further investigations are needed to determine whether bank voles could be involved as silent hosts in the transmission of HPAI viruses to other mammals and domestic poultry.


Subject(s)
Arvicolinae , Disease Susceptibility/veterinary , Influenza A Virus, H5N1 Subtype/physiology , Influenza A Virus, H7N1 Subtype/physiology , Orthomyxoviridae Infections/veterinary , Rodent Diseases/transmission , Virus Shedding , Animals , Disease Susceptibility/virology , Nose/virology , Orthomyxoviridae Infections/transmission , Orthomyxoviridae Infections/virology , Rodent Diseases/virology
8.
Virology ; 476: 233-239, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25555151

ABSTRACT

H7 avian influenza viruses (AIVs) have caused a number of human infections, highlighting the pandemic potential of them. However, the factors that promote their replication in mammals remain poorly understood. Here, we generated mouse-adapted variants of a reassortant H7N1 virus to identify adaptive changes that confer enhanced virulence in mammals. The mouse lethal doses (MLD50) of the variants were reduced >10,000-fold compared to the parental virus. Adapted variants displayed enhanced replication kinetics in vitro and vivo, and were capable of replicating in multiple organs. Analysis of the variant virus genomes revealed amino acid changes in the PB2 (E627K), HA (H3 numbering; E114K, G205E, and G218E), and NA (S350N) proteins. Notably, some amino acid changes have been identified in natural H7 isolates. Our results implicate a number of amino acid substitutions that collectively enhance the ability of a wild bird-origin H7N1 AIV to replicate and cause severe disease in mice.


Subject(s)
Amino Acid Substitution , Anseriformes/virology , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza in Birds/virology , Reassortant Viruses/genetics , Reassortant Viruses/pathogenicity , Adaptation, Biological , Animals , Animals, Wild/virology , Female , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Influenza A Virus, H7N1 Subtype/physiology , Mice , Mice, Inbred BALB C , Neuraminidase/genetics , Neuraminidase/metabolism , RNA-Dependent RNA Polymerase/genetics , RNA-Dependent RNA Polymerase/metabolism , Reassortant Viruses/isolation & purification , Reassortant Viruses/physiology , Viral Proteins/genetics , Viral Proteins/metabolism , Virulence
9.
mBio ; 5(5): e01882-14, 2014 Oct 14.
Article in English | MEDLINE | ID: mdl-25316697

ABSTRACT

Inappropriately named gain-of-function influenza research seeks to confer airborne transmission on avian influenza A viruses that otherwise cause only dead-end infections in humans. A recent study has succeeded in doing this with a highly pathogenic ostrich H7N1 virus in a ferret model without loss of virulence. If transposable to humans, this would constitute a novel virus with a case fatality rate ~30 greater than that of Spanish flu. A commentary from three distinguished virologists considered the benefits of this work to outweigh potential risks. I beg to disagree with conclusions in both papers, for the underlying science is not as strong as it appears.


Subject(s)
Air Microbiology , Influenza A Virus, H7N1 Subtype/physiology , Influenza, Human/transmission , Influenza, Human/virology , Animals , Female , Humans
11.
Article in English | MEDLINE | ID: mdl-25151089

ABSTRACT

Influenza A viruses (IAV) have the potential to cause devastating pandemics. In recent years, the emergence of new avian strains able to infect humans represents a serious threat to global human health. The increase in drug-resistant IAV strains underscores the need for novel approaches to anti-influenza chemotherapy. Herein we show that prostaglandin-A1 (PGA1) possesses antiviral activity against avian IAV, including H5N9, H7N1 and H1N1 strains, acting at a level different from the currently available anti-influenza drugs. PGA1 acts at postentry level, causing dysregulation of viral protein synthesis and preventing virus-induced disassembly of host microtubular network and activation of pro-inflammatory factor NF-κB. The antiviral activity is dependent on the presence of a cyclopentenone ring structure and is associated with activation of a cytoprotective heat shock response in infected cells. The results suggest that cyclopentenone prostanoids or prostanoids-derived molecules may represent a new tool to combat avian influenza virus infection.


Subject(s)
Antiviral Agents/pharmacology , Influenza A virus/drug effects , NF-kappa B/drug effects , Prostaglandins A/pharmacology , Viral Proteins/biosynthesis , Virus Replication/drug effects , Animals , Cell Line , Chickens , Dogs , Humans , Influenza A Virus, H1N1 Subtype/drug effects , Influenza A Virus, H1N1 Subtype/physiology , Influenza A Virus, H7N1 Subtype/drug effects , Influenza A Virus, H7N1 Subtype/physiology , Influenza A virus/physiology , Madin Darby Canine Kidney Cells , NF-kappa B/metabolism , Pulmonary Alveoli
13.
J Virol ; 88(12): 6623-35, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24696487

ABSTRACT

UNLABELLED: Avian H7 influenza viruses are recognized as potential pandemic viruses, as personnel often become infected during poultry outbreaks. H7 infections in humans typically cause mild conjunctivitis; however, the H7N9 outbreak in the spring of 2013 has resulted in severe respiratory disease. To date, no H7 viruses have acquired the ability for sustained transmission among humans. Airborne transmission is considered a requirement for the emergence of pandemic influenza, and advanced knowledge of the molecular changes or signature required for transmission would allow early identification of pandemic vaccine seed stocks, screening and stockpiling of antiviral compounds, and eradication efforts focused on flocks harboring threatening viruses. Thus, we sought to determine if a highly pathogenic influenza A H7N1 (A/H7N1) virus with no history of human infection could become capable of airborne transmission among ferrets. We show that after 10 serial passages, A/H7N1 developed the ability to be transmitted to cohoused and airborne contact ferrets. Four amino acid mutations (PB2 T81I, NP V284M, and M1 R95K and Q211K) in the internal genes and a minimal amino acid mutation (K/R313R) in the stalk region of the hemagglutinin protein were associated with airborne transmission. Furthermore, transmission was not associated with loss of virulence. These findings highlight the importance of the internal genes in host adaptation and suggest that natural isolates carrying these mutations be further evaluated. Our results demonstrate that a highly pathogenic avian H7 virus can become capable of airborne transmission in a mammalian host, and they support ongoing surveillance and pandemic H7 vaccine development. IMPORTANCE: The major findings of this report are that a highly pathogenic strain of H7N1 avian influenza virus can be adapted to become capable of airborne transmission in mammals without mutations altering receptor specificity. Changes in receptor specificity have been shown to play a role in the ability of avian influenza viruses to cross the species barrier, and these changes are assumed to be essential. The work reported here challenges this paradigm, at least for the influenza viruses of the H7 subtype, which have recently become the focus of major attention, as they have crossed to humans.


Subject(s)
Air Microbiology , Influenza A Virus, H7N1 Subtype/physiology , Influenza, Human/transmission , Influenza, Human/virology , Adaptation, Physiological , Animals , Disease Models, Animal , Female , Ferrets , Humans , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/pathogenicity , Serial Passage , Virulence
14.
J Virol ; 88(8): 4375-88, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24501401

ABSTRACT

UNLABELLED: Avian influenza (AI) viruses of the H7 subtype have the potential to evolve into highly pathogenic (HP) viruses that represent a major economic problem for the poultry industry and a threat to global health. However, the emergence of HPAI viruses from low-pathogenic (LPAI) progenitor viruses currently is poorly understood. To investigate the origin and evolution of one of the most important avian influenza epidemics described in Europe, we investigated the evolutionary and spatial dynamics of the entire genome of 109 H7N1 (46 LPAI and 63 HPAI) viruses collected during Italian H7N1 outbreaks between March 1999 and February 2001. Phylogenetic analysis revealed that the LPAI and HPAI epidemics shared a single ancestor, that the HPAI strains evolved from the LPAI viruses in the absence of reassortment, and that there was a parallel emergence of mutations among HPAI and later LPAI lineages. Notably, an ultradeep-sequencing analysis demonstrated that some of the amino acid changes characterizing the HPAI virus cluster were already present with low frequency within several individual viral populations from the beginning of the LPAI H7N1 epidemic. A Bayesian phylogeographic analysis revealed stronger spatial structure during the LPAI outbreak, reflecting the more rapid spread of the virus following the emergence of HPAI. The data generated in this study provide the most complete evolutionary and phylogeographic analysis of epidemiologically intertwined high- and low-pathogenicity viruses undertaken to date and highlight the importance of implementing prompt eradication measures against LPAI to prevent the appearance of viruses with fitness advantages and unpredictable pathogenic properties. IMPORTANCE: The Italian H7 AI epidemic of 1999 to 2001 was one of the most important AI outbreaks described in Europe. H7 viruses have the ability to evolve into HP forms from LP precursors, although the mechanisms underlying this evolutionary transition are only poorly understood. We combined epidemiological information, whole-genome sequence data, and ultradeep sequencing approaches to provide the most complete characterization of the evolution of HPAI from LPAI viruses undertaken to date. Our analysis revealed that the LPAI viruses were the direct ancestors of the HPAI strains and identified low-frequency minority variants with HPAI mutations that were present in the LPAI samples. Spatial analysis provided key information for the design of effective control strategies for AI at both local and global scales. Overall, this work highlights the importance of implementing rapid eradication measures to prevent the emergence of novel influenza viruses with severe pathogenic properties.


Subject(s)
Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza in Birds/virology , Poultry Diseases/virology , Animals , Chickens , Genome, Viral , Influenza A Virus, H7N1 Subtype/classification , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/physiology , Influenza in Birds/epidemiology , Italy/epidemiology , Molecular Sequence Data , Phylogeny , Poultry Diseases/epidemiology , Virulence
15.
Vet Res ; 45: 7, 2014 Jan 25.
Article in English | MEDLINE | ID: mdl-24460592

ABSTRACT

Some outbreaks involving highly pathogenic avian influenza viruses (HPAIV) of subtypes H5 and H7 were caused by avian-to-human transmissions. In nature, different influenza A viruses can reassort leading to new viruses with new characteristics. We decided to investigate the impact that the NS-segment of H5 HPAIV would have on viral pathogenicity of a classical avian H7 HPAIV in poultry, a natural host. We focussed this study based on our previous work that demonstrated that single reassortment of the NS-segment from an H5 HPAIV into an H7 HPAIV changes the ability of the virus to replicate in mammalian hosts. Our present data show that two different H7-viruses containing an NS-segment from H5-types (FPV NS GD or FPV NS VN) show an overall highly pathogenic phenotype compared with the wild type H7-virus (FPV), as characterized by higher viral shedding and earlier manifestation of clinical signs. Correlating with the latter, higher amounts of IFN-ß mRNA were detected in the blood of NS-reassortant infected birds, 48 h post-infection (pi). Although lymphopenia was detected in chickens from all AIV-infected groups, also 48 h pi those animals challenged with NS-reassortant viruses showed an increase of peripheral monocyte/macrophage-like cells expressing high levels of IL-1ß, as determined by flow cytometry. Taken together, these findings highlight the importance of the NS-segment in viral pathogenicity which is directly involved in triggering antiviral and pro-inflammatory cytokines found during HPAIV pathogenesis in chickens.


Subject(s)
Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza in Birds/immunology , Poultry Diseases/immunology , Reassortant Viruses/pathogenicity , Viral Nonstructural Proteins/genetics , Animals , Chickens , Host-Pathogen Interactions , Influenza A Virus, H5N1 Subtype/genetics , Influenza A Virus, H5N1 Subtype/immunology , Influenza A Virus, H5N1 Subtype/physiology , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/immunology , Influenza A Virus, H7N1 Subtype/physiology , Influenza in Birds/virology , Poultry Diseases/virology , Reassortant Viruses/genetics , Reassortant Viruses/immunology , Reassortant Viruses/physiology , Virulence , Virus Replication
16.
J Virol ; 88(3): 1502-12, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24227867

ABSTRACT

The zoonotic outbreak of H7N9 subtype avian influenza virus that occurred in eastern China in the spring of 2013 resulted in 135 confirmed human cases, 44 of which were lethal. Sequencing of the viral genome revealed a number of molecular signatures associated with virulence or transmission in mammals. We report here that, in the guinea pig model, a human isolate of novel H7N9 influenza virus, A/Anhui/1/2013 (An/13), is highly dissimilar to an H7N1 avian isolate and instead behaves similarly to a human seasonal strain in several respects. An/13 was found to have a low 50% infectious dose, grow to high titers in the upper respiratory tract, and transmit efficiently among cocaged guinea pigs. The pH of fusion of the hemagglutinin (HA) and the binding of virus to fixed guinea pig tissues were also examined. The An/13 HA displayed a relatively elevated pH of fusion characteristic of many avian strains, and An/13 resembled avian viruses in terms of attachment to tissues. One important difference was seen between An/13 and both the H3N2 human and the H7N1 avian viruses: when inoculated intranasally at a high dose, only the An/13 virus led to productive infection of the lower respiratory tract of guinea pigs. In sum, An/13 was found to retain fusion and attachment properties of an avian influenza virus but displayed robust growth and contact transmission in the guinea pig model atypical of avian strains and indicative of mammalian adaptation.


Subject(s)
Disease Models, Animal , Guinea Pigs , Influenza A Virus, H7N9 Subtype/growth & development , Influenza A Virus, H7N9 Subtype/pathogenicity , Influenza, Human/virology , Animals , Female , Humans , Influenza A Virus, H3N2 Subtype/genetics , Influenza A Virus, H3N2 Subtype/physiology , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/physiology , Influenza A Virus, H7N9 Subtype/genetics , Influenza A Virus, H7N9 Subtype/physiology , Influenza, Human/transmission , Virulence
17.
Vet Microbiol ; 166(3-4): 419-28, 2013 Oct 25.
Article in English | MEDLINE | ID: mdl-23891171

ABSTRACT

Wild aquatic birds are the natural reservoir of avian influenza virus (AIV), and the virus is transmitted among birds through a fecal-oral route. Infected birds excrete significant amounts of AIV into the environment, and thereby sustain the circulation of AIV in the bird populations. Improved knowledge on the influence of environmental factors on the persistence of AIV in natural habitats would be valuable for risk assessments. The presented work investigated the persistence of two low-pathogenic AIV subtypes in natural water samples. The study included two AIVs formerly isolated from wild ducks, which were suspended in filtered natural fresh, brackish or sea water with salinity of 0, 8000 and 20,000 parts per million (ppm), respectively. Also sterilized brackish and sea waters were included in order to examine the influence of microbial flora on virus persistence. All water samples were incubated at temperatures representative for seasonal variation of ambient temperatures in Northern Europe (4, 17 and 25 °C). The results showed a clear correlation between persistence of viral infectivity and temperature, salinity and presence of microbial flora. While independent of virus subtype, the persistence of infectivity was negatively affected by increased temperature, salinity as well as presence of natural microbial flora. The study provides insight on impact of essential physical, chemical and biological parameters on persistence of AIV in aquatic environments. Studies determining the importance of additional environmental parameters and the detailed mechanisms of microbial inactivation of AIV should be encouraged.


Subject(s)
Influenza A Virus, H7N1 Subtype/isolation & purification , Influenza A virus/isolation & purification , Influenza in Birds/virology , Animals , Animals, Wild/virology , Ducks/virology , Ecosystem , Europe , Filtration , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza A Virus, H7N1 Subtype/physiology , Influenza A virus/genetics , Influenza A virus/pathogenicity , Influenza A virus/physiology , Virulence , Water/chemistry , Water Microbiology
18.
J Virol ; 87(10): 5362-71, 2013 May.
Article in English | MEDLINE | ID: mdl-23468508

ABSTRACT

Highly pathogenic avian influenza viruses (HPAIV) of subtypes H5 and H7 have caused numerous outbreaks in diverse poultry species and rising numbers of human infections. Both HPAIV subtypes support a growing concern of a pandemic outbreak, specifically via the avian-human link. Natural reassortment of both HPAIV subtypes is a possible event with unpredictable outcome for virulence and host specificity of the progeny virus for avian and mammalian species. NS reassortment of H5N1 HPAIV viruses in the background of A/FPV/Rostock/1934 (H7N1) HPAIV has been shown to change virus replication kinetics and host cell responses in mammalian cells. However, not much is known about the virus-host interaction of such viruses in avian species. In the present study, we show that the NS segment of A/Vietnam/1203/2004 (FPV NS VN, H5N1) HPAIV significantly altered the characteristics of the H7 prototype HPAIV in tracheal organ cultures (TOC) of chicken and turkey in vitro, with decreased replication efficiency accompanied by increased induction of type I interferon (IFN) and apoptosis. Furthermore, species-specific differences between chicken and turkey were demonstrated. Interestingly, NS-reassortant FPV NS VN showed an overall highly pathogenic phenotype, with increased virulence and replication potential compared to the wild-type virus after systemic infection of chicken and turkey embryos. Our data demonstrate that single reassortment of an H5-type NS into an H7-type HPAIV significantly changed virus replication abilities and influenced the avian host cell response without prior adaptation.


Subject(s)
Host-Pathogen Interactions , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza A Virus, H7N1 Subtype/pathogenicity , Reassortant Viruses/pathogenicity , Viral Nonstructural Proteins/genetics , Animals , Chickens , Influenza A Virus, H5N1 Subtype/genetics , Influenza A Virus, H5N1 Subtype/immunology , Influenza A Virus, H5N1 Subtype/physiology , Influenza A Virus, H7N1 Subtype/genetics , Influenza A Virus, H7N1 Subtype/immunology , Influenza A Virus, H7N1 Subtype/physiology , Interferon Type I/metabolism , Organ Culture Techniques , Reassortant Viruses/genetics , Reassortant Viruses/immunology , Reassortant Viruses/physiology , Trachea/virology , Turkeys , Virus Replication
19.
Vet Res ; 44: 23, 2013 Mar 28.
Article in English | MEDLINE | ID: mdl-23537387

ABSTRACT

European quail (Coturnix c. coturnix) may share with Japanese quail (Coturnix c. japonica) its potential as an intermediate host and reservoir of avian influenza viruses (AIV). To elucidate this question, European quail were experimentally challenged with two highly pathogenic AIV (HPAIV) (H7N1/HP and H5N1/HP) and one low pathogenic AIV (LPAIV) (H7N2/LP). Contact animals were also used to assess the viral transmission among birds. Severe neurological signs and mortality rates of 67% (H7N1/HP) and 92% (H5N1/HP) were observed. Although histopathological findings were present in both HPAIV-infected groups, H5N1/HP-quail displayed a broader viral antigen distribution and extent of microscopic lesions. Neither clinical nor pathological involvement was observed in LPAIV-infected quail. Consistent long-term viral shedding and effective transmission to naive quail was demonstrated for the three studied AIV. Drinking water arose as a possible transmission route and feathers as a potential origin of HPAIV dissemination. The present study demonstrates that European quail may play a major role in AI epidemiology, highlighting the need to further understand its putative role as an intermediate host for avian/mammalian reassortant viruses.


Subject(s)
Coturnix , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza A Virus, H7N2 Subtype/pathogenicity , Influenza in Birds/transmission , Animals , Enzyme-Linked Immunosorbent Assay/veterinary , Female , Influenza A Virus, H5N1 Subtype/physiology , Influenza A Virus, H7N1 Subtype/physiology , Influenza A Virus, H7N2 Subtype/physiology , Influenza in Birds/virology , Male , Polymerase Chain Reaction/veterinary , Random Allocation , Virus Shedding
20.
Dev Comp Immunol ; 39(3): 198-206, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23178410

ABSTRACT

Infection with highly pathogenic avian influenza (HPAI) in birds and mammals is associated with severe pathology and increased mortality. We hypothesize that in contrast to low pathogenicity avian influenza (LPAI) infection, HPAI infection of chicken dendritic cells (DC) induces a cytokine deregulation which may contribute to their highly pathogenic nature. Infection of DC with LPAI H7N1 and H5N2 resulted in viral RNA and NP expression without increase in time, in contrast to HPAI H7N1 and H5N2 mRNA expression. No increase in IFN mRNA was detected after infection with LPAI, but after LPAI H5N2, and not LPAI H7N1, infection the level of bioactive IFNα/ß significantly increased. After HPAI H7N1 and H5N2 infection, significant increases in IL-8, IFN-α, IFN-γ mRNA expression and in TLR1, 3, and 21 mRNA were observed. This enhanced activation of DC after HPAI infection may trigger deregulation of the immune response as seen during HPAI infection in chickens.


Subject(s)
Chickens/immunology , Dendritic Cells/immunology , Influenza A Virus, H5N2 Subtype/immunology , Influenza A Virus, H5N2 Subtype/physiology , Influenza A Virus, H7N1 Subtype/physiology , Influenza in Birds/immunology , Animals , Cells, Cultured , Chickens/virology , Cytokines/genetics , Cytokines/metabolism , Dendritic Cells/virology , Disease Susceptibility , Immunity, Cellular , Influenza A Virus, H5N2 Subtype/pathogenicity , Influenza A Virus, H7N1 Subtype/pathogenicity , Influenza in Birds/physiopathology , Species Specificity , Toll-Like Receptor 1/genetics , Toll-Like Receptor 1/metabolism , Toll-Like Receptor 3/genetics , Toll-Like Receptor 3/metabolism , Up-Regulation , Virus Replication
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