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1.
Arch Biochem Biophys ; 744: 109700, 2023 08.
Article in English | MEDLINE | ID: mdl-37506994

ABSTRACT

The inosine triphosphate pyrophosphatase (ITPA) enzyme plays a critical cellular role by removing noncanonical nucleoside triphosphates from nucleotide pools. One of the first pathological ITPA mutants identified is R178C (rs746930990), which causes a fatal infantile encephalopathy, termed developmental and epileptic encephalopathy 35 (DEE 35). The accumulation of noncanonical nucleotides such as inosine triphosphate (ITP), is suspected to affect RNA and/or interfere with normal nucleotide function, leading to development of DEE 35. Molecular dynamics simulations have shown that the very rare R178C mutation does not significantly perturb the overall structure of the protein, but results in a high level of structural flexibility and disrupts active-site hydrogen bond networks, while preliminary biochemical data indicate that ITP hydrolyzing activity is significantly reduced for the R178C mutant. Here we report Michaelis-Menten enzyme kinetics data for the R178C ITPA mutant and three other position 178 ITPA mutants. These data confirm that position 178 is essential for ITPA activity and even conservative mutation at this site (R178K) results in significantly reduced enzyme activity. Our data support that disruption of the active-site hydrogen bond network is a major cause of diminished ITP hydrolyzing activity for the R178C mutation. These results suggest an avenue for developing therapies to address DEE 35.


Subject(s)
Inosine , Pyrophosphatases , Pyrophosphatases/metabolism , Inosine Triphosphate/metabolism , Arginine , Nucleotides/metabolism
2.
Nucleic Acids Res ; 50(16): 9306-9318, 2022 09 09.
Article in English | MEDLINE | ID: mdl-35979951

ABSTRACT

Failure to prevent accumulation of the non-canonical nucleotide inosine triphosphate (ITP) by inosine triphosphate pyrophosphatase (ITPase) during nucleotide synthesis results in misincorporation of inosine into RNA and can cause severe and fatal developmental anomalies in humans. While the biochemical activity of ITPase is well understood, the pathogenic basis of ITPase deficiency and the molecular and cellular consequences of ITP misincorporation into RNA remain cryptic. Here, we demonstrate that excess ITP in the nucleotide pool during in vitro transcription results in T7 polymerase-mediated inosine misincorporation in luciferase RNA. In vitro translation of inosine-containing luciferase RNA reduces resulting luciferase activity, which is only partly explained by reduced abundance of the luciferase protein produced. Using Oxford Nanopore Direct RNA sequencing, we reveal inosine misincorporation to be stochastic but biased largely towards misincorporation in place of guanosine, with evidence for misincorporation also in place of cytidine, adenosine and uridine. Inosine misincorporation into RNA is also detected in Itpa-null mouse embryonic heart tissue as an increase in relative variants compared with the wild type using Illumina RNA sequencing. By generating CRISPR/Cas9 rat H9c2 Itpa-null cardiomyoblast cells, we validate a translation defect in cells that accumulate inosine within endogenous RNA. Furthermore, we observe hindered cellular translation of transfected luciferase RNA containing misincorporated inosine in both wild-type and Itpa-null cells. We therefore conclude that inosine misincorporation into RNA perturbs translation, thus providing mechanistic insight linking ITPase deficiency, inosine accumulation and pathogenesis.


Subject(s)
Inosine Triphosphate , RNA , Humans , Animals , Mice , Rats , Inosine Triphosphate/metabolism , Pyrophosphatases/genetics , Inosine , Nucleotides
3.
Structure ; 30(6): 886-899.e4, 2022 06 02.
Article in English | MEDLINE | ID: mdl-35504278

ABSTRACT

Unlike most kinases, phosphatidylinositol 5-phosphate 4-kinase ß (PI5P4Kß) utilizes GTP as a physiological phosphate donor and regulates cell growth under stress (i.e., GTP-dependent stress resilience). However, the genesis and evolution of its GTP responsiveness remain unknown. Here, we reveal that PI5P4Kß has acquired GTP preference by generating a short dual-nucleotide-recognizing motif called the guanine efficient association (GEA) motif. Comparison of nucleobase recognition with 660 kinases and 128 G proteins has uncovered that most kinases and PI5P4Kß use their main-chain atoms for adenine recognition, while the side-chain atoms are required for guanine recognition. Mutational analysis of the GEA motif revealed that the acquisition of GTP reactivity is accompanied by an extended activity toward inosine triphosphate (ITP) and xanthosine triphosphate (XTP). Along with the evolutionary analysis data that point to strong negative selection of the GEA motif, these results suggest that the GTP responsiveness of PI5P4Kß has evolved from a compromised trade-off between activity and specificity, underpinning the development of the GTP-dependent stress resilience.


Subject(s)
GTP-Binding Proteins , Inosine Triphosphate , GTP-Binding Proteins/metabolism , Guanine , Guanosine Triphosphate/metabolism , Inosine Triphosphate/metabolism
4.
Cells ; 11(3)2022 01 24.
Article in English | MEDLINE | ID: mdl-35159194

ABSTRACT

Inosine triphosphate pyrophosphatase (ITPase) is an enzyme encoded by the ITPA gene and functions to prevent the incorporation of noncanonical purine nucleotides into DNA and RNA. Specifically, the ITPase catalyzed the hydrolysis of (deoxy) nucleoside triphosphates ((d) NTPs) into the corresponding nucleoside monophosphate with the concomitant release of pyrophosphate. Recently, thiopurine drug metabolites such as azathioprine have been included in the lists of ITPase substrates. Interestingly, inosine or xanthosine triphosphate (ITP/XTP) and their deoxy analogs, deoxy inosine or xanthosine triphosphate (dITP/dXTP), are products of important biological reactions such as deamination that take place within the cellular compartments. However, the incorporation of ITP/XTP, dITP/dXTP, or the genetic deficiency or polymorphism of the ITPA gene have been implicated in many human diseases, including infantile epileptic encephalopathy, early onset of tuberculosis, and the responsiveness of patients to cancer therapy. This review provides an up-to-date report on the ITPase enzyme, including information regarding its discovery, analysis, and cellular localization, its implication in human diseases including cancer, and its therapeutic potential, amongst others.


Subject(s)
Inosine Triphosphate , Neoplasms , Pyrophosphatases , Humans , Inosine , Inosine Triphosphate/metabolism , Mutation , Neoplasms/drug therapy , Neoplasms/genetics , Nucleosides , Nucleotides/metabolism , Pyrophosphatases/genetics , Pyrophosphatases/metabolism , Inosine Triphosphatase
5.
Biochemistry ; 60(40): 3027-3039, 2021 10 12.
Article in English | MEDLINE | ID: mdl-34569786

ABSTRACT

Guanosine triphosphate (GTP) cyclohydrolase II (RibA) is one of three enzymes that hydrolytically cleave the C8-N9 bond of the GTP guanine. RibA also catalyzes a subsequent hydrolytic attack at the base liberating formate and in addition cleaves the α-ß phosphodiester bond of the triphosphate to form pyrophosphate (PPi). These hydrolytic reactions are promoted by tandem active-site metal ions, zinc and magnesium, that respectively function at the GTP guanine and triphosphate moieties. The RibA reaction is part of riboflavin biosynthesis and forms 2,5-diamino-6-ß-pyrimidinone 5'-phosphate, an exocyclic pyrimidine nucleotide that ultimately forms the pyrimidine ring of the isoalloxazine of riboflavin. The stoichiometry of the RibA reaction was defined in the study that first identified this activity in Escherichia coli (Foor, F., Brown, G. M. J. Biol. Chem., 1975, 250, 9, 3545-3551) and has not been quantitatively evaluated in subsequent works. Using primarily transient state approaches we examined the interaction of RibA from E. coli with the GTP, inosine triphosphate, and PPi. Our data indicate that PPi is a slow substrate for RibA that is cleaved to form two phosphate ions (Pi). A combination of real-time enzymatically coupled Pi reporter assays and end-point 31P NMR revealed that Pi is formed at a catalytically relevant rate in the native reaction of RibA with GTP, redefining the reaction stoichiometry. Furthermore, our data indicate that both PPi and GTP stimulate conformational changes prior to hydrolytic chemistry, and we conclude that the cleavage of PPi bound as a substrate or an intermediate state results in conformational relaxation.


Subject(s)
Escherichia coli Proteins/chemistry , Escherichia coli/enzymology , GTP Cyclohydrolase/chemistry , Biocatalysis , Diphosphates/metabolism , Escherichia coli Proteins/metabolism , GTP Cyclohydrolase/metabolism , Guanosine Triphosphate/metabolism , Inosine Triphosphate/metabolism , Kinetics , Protein Binding , Pyrophosphatases/chemistry , Pyrophosphatases/metabolism
6.
Org Biomol Chem ; 18(2): 255-262, 2020 01 02.
Article in English | MEDLINE | ID: mdl-31815989

ABSTRACT

Five 2-substituted 2'-deoxyinosine triphosphates (dRITP) were synthesized and tested as substrates in enzymatic synthesis of minor-groove base-modified DNA. Only 2-methyl and 2-vinyl derivatives proved to be good substrates for Therminator DNA polymerase, whilst all other dRITPs and other tested DNA polymerases did not give full length products in primer extension. The DNA containing 2-vinylhypoxanthine was then further modified through thiol-ene reactions with thiols. Cross-linking reaction between cysteine-containing minor-groove binding dodecapeptide and DNA proceeded thanks to the proximity effect between thiol and vinyl groups inside the minor groove. 2-Substituted dIRTPs and also previously prepared 2-substituted 2'-deoxyadenosine triphosphates (dRATP) were then used for enzymatic synthesis of minor-groove modified DNA to study the effect of minor-groove modifications on cleavage of DNA by type II restriction endonucleases (REs). Although the REs should recognize the sequence through H-bonds in the major groove, some minor-groove modifications also had an inhibiting effect on the cleavage.


Subject(s)
DNA Restriction Enzymes/metabolism , DNA-Directed DNA Polymerase/metabolism , DNA/chemistry , Inosine Triphosphate/analogs & derivatives , Substrate Specificity , DNA/biosynthesis , Deoxyribonucleases, Type II Site-Specific/metabolism , Hydrogen Bonding , Inosine Triphosphate/chemical synthesis , Inosine Triphosphate/metabolism , Nucleic Acid Conformation , Structure-Activity Relationship , Vinyl Compounds/chemistry
7.
Sci Rep ; 9(1): 13102, 2019 09 11.
Article in English | MEDLINE | ID: mdl-31511627

ABSTRACT

Nicotinamide adenine dinucleotide (NAD) is an important coenzyme that regulates various metabolic pathways, including glycolysis, ß-oxidation, and oxidative phosphorylation. Additionally, NAD serves as a substrate for poly(ADP-ribose) polymerase (PARP), sirtuin, and NAD glycohydrolase, and it regulates DNA repair, gene expression, energy metabolism, and stress responses. Many studies have demonstrated that NAD metabolism is deeply involved in aging and aging-related diseases. Previously, we demonstrated that nicotinamide guanine dinucleotide (NGD) and nicotinamide hypoxanthine dinucleotide (NHD), which are analogs of NAD, are significantly increased in Nmnat3-overexpressing mice. However, there is insufficient knowledge about NGD and NHD in vivo. In the present study, we aimed to investigate the metabolism and biochemical properties of these NAD analogs. We demonstrated that endogenous NGD and NHD were found in various murine tissues, and their synthesis and degradation partially rely on Nmnat3 and CD38. We have also shown that NGD and NHD serve as coenzymes for alcohol dehydrogenase (ADH) in vitro, although their affinity is much lower than that of NAD. On the other hand, NGD and NHD cannot be used as substrates for SIRT1, SIRT3, and PARP1. These results reveal the basic metabolism of NGD and NHD and also highlight their biological function as coenzymes.


Subject(s)
Guanine Nucleotides/metabolism , NAD/analogs & derivatives , Aging/metabolism , Animals , Guanine Nucleotides/biosynthesis , Guanosine Triphosphate/metabolism , Inosine Triphosphate/metabolism , Mice , NAD/biosynthesis , NAD/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Sirtuins/metabolism
8.
Proc Natl Acad Sci U S A ; 115(12): 3012-3017, 2018 03 20.
Article in English | MEDLINE | ID: mdl-29507216

ABSTRACT

Enzymatic substrate selectivity is critical for the precise control of metabolic pathways. In cases where chemically related substrates are present inside cells, robust mechanisms of substrate selectivity are required. Here, we report the mechanism utilized for catalytic ATP versus GTP selectivity during adenylate kinase (Adk) -mediated phosphorylation of AMP. Using NMR spectroscopy we found that while Adk adopts a catalytically competent and closed structural state in complex with ATP, the enzyme is arrested in a catalytically inhibited and open state in complex with GTP. X-ray crystallography experiments revealed that the interaction interfaces supporting ATP and GTP recognition, in part, are mediated by coinciding residues. The mechanism provides an atomic view on how the cellular GTP pool is protected from Adk turnover, which is important because GTP has many specialized cellular functions. In further support of this mechanism, a structure-function analysis enabled by synthesis of ATP analogs suggests that a hydrogen bond between the adenine moiety and the backbone of the enzyme is vital for ATP selectivity. The importance of the hydrogen bond for substrate selectivity is likely general given the conservation of its location and orientation across the family of eukaryotic protein kinases.


Subject(s)
Adenosine Triphosphate/metabolism , Adenylyl Cyclases/metabolism , Guanosine Triphosphate/metabolism , Adenylyl Cyclase Inhibitors/chemistry , Adenylyl Cyclase Inhibitors/pharmacology , Inosine Triphosphate/genetics , Inosine Triphosphate/metabolism , Kinetics , Models, Molecular , Protein Conformation , Structure-Activity Relationship , Substrate Specificity
9.
Biotechniques ; 63(3): 105-106, 2017 09 01.
Article in English | MEDLINE | ID: mdl-28911313

ABSTRACT

Address correspondence to Sergey Belikov or Lars Wieslander, Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, SE-106 91 Stockholm, Sweden. E-mail: sergey.belikov@su.se or lars.wieslander@su.se.


Subject(s)
DNA Footprinting , DNA Primers/chemistry , DNA Probes/chemistry , DNA Probes/genetics , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Deoxyguanine Nucleotides/metabolism , Inosine Triphosphate/analogs & derivatives , Inosine Triphosphate/metabolism , RNA, Ribosomal, 18S/chemistry , RNA, Ribosomal, 18S/genetics , Reverse Transcription , Sequence Analysis, DNA
10.
Proc Natl Acad Sci U S A ; 111(18): 6642-7, 2014 May 06.
Article in English | MEDLINE | ID: mdl-24733897

ABSTRACT

Recent evidence suggests that transcript elongation by RNA polymerase II (RNAPII) is regulated by mechanical cues affecting the entry into, and exit from, transcriptionally inactive states, including pausing and arrest. We present a single-molecule optical-trapping study of the interactions of RNAPII with transcription elongation factors TFIIS and TFIIF, which affect these processes. By monitoring the response of elongation complexes containing RNAPII and combinations of TFIIF and TFIIS to controlled mechanical loads, we find that both transcription factors are independently capable of restoring arrested RNAPII to productive elongation. TFIIS, in addition to its established role in promoting transcript cleavage, is found to relieve arrest by a second, cleavage-independent mechanism. TFIIF synergistically enhances some, but not all, of the activities of TFIIS. These studies also uncovered unexpected insights into the mechanisms underlying transient pauses. The direct visualization of pauses at near-base-pair resolution, together with the load dependence of the pause-entry phase, suggests that two distinct mechanisms may be at play: backtracking under forces that hinder transcription and a backtrack-independent activity under assisting loads. The measured pause lifetime distributions are inconsistent with prevailing views of backtracking as a purely diffusive process, suggesting instead that the extent of backtracking may be modulated by mechanisms intrinsic to RNAPII. Pauses triggered by inosine triphosphate misincorporation led to backtracking, even under assisting loads, and their lifetimes were reduced by TFIIS, particularly when aided by TFIIF. Overall, these experiments provide additional insights into how obstacles to transcription may be overcome by the concerted actions of multiple accessory factors.


Subject(s)
RNA Polymerase II/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Transcription Elongation, Genetic , Transcription Factors, TFII/metabolism , Transcriptional Elongation Factors/metabolism , Enzyme Activation , Enzyme Reactivators/metabolism , Inosine Triphosphate/metabolism , Kinetics , Models, Biological , Optical Tweezers , RNA Polymerase II/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Transcription Factors, TFII/genetics , Transcriptional Elongation Factors/genetics
11.
Mol Biotechnol ; 53(1): 49-54, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22351430

ABSTRACT

An alternative method to combine mutagenesis PCR with dITP and fragmentation by endonuclease V for directed evolution was developed. In comparison to the routine protocol for directed evolution, dITP was used as mutation reagent in the mutagenesis PCR. Subsequently, the incorporated dITP in the PCR products could represent as being the target of endonuclease V. Finally, the mutated dsDNA was fragmented by endonuclease V and then shuffled via assembly and reamplification as is usually done. In this study, the gene encoding kanamycin resistance has been used as reporter to verify the novel method for directed evolution. However, the mutation frequency could be easily adjusted by the amount of dITP used in the mutagenesis PCR reaction. Besides, this protocol yielded the mutation types with an obvious bias to transition substitutions as the normal error-prone PCR did. Conclusively, this novel method for directed evolution has been demonstrated to be efficient, reproducible, and easy to handle in actual practice. Using this protocol, we have successfully constructed a random mutation library for the gene encoding a serine alkaline protease.


Subject(s)
DNA Fragmentation/drug effects , Deoxyribonuclease (Pyrimidine Dimer)/genetics , Directed Molecular Evolution/methods , Inosine Triphosphate/analogs & derivatives , Cloning, Molecular , DNA/drug effects , DNA/genetics , DNA Shuffling/methods , Deoxyribonuclease (Pyrimidine Dimer)/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Library , Inosine Triphosphate/metabolism , Kanamycin/metabolism , Mutagenesis/drug effects , Mutation , Polymerase Chain Reaction/methods , Reproducibility of Results , Sequence Analysis, DNA
12.
Protoplasma ; 250(2): 531-8, 2013 Apr.
Article in English | MEDLINE | ID: mdl-22872095

ABSTRACT

Ca(2+)-ATPase in the peribacteroid membrane (PBM) of symbiosomes isolated from Vicia faba root nodules was characterized in terms of its hydrolytic and transport activities. Both activities were found to be pH-dependent and exhibit pH optimum at pH 7.0. Translocation of Ca(2+) through the PBM by the Ca(2+)-ATPase was shown to be fueled by ATP and other nucleotide triphosphates in the following order: ATP > ITP ≅ GTP ≅ UTP ≅ CTP, the K m of the enzyme for MgATP being about 100 µM. Ca-dependent ITP-hydrolytic activity of symbiosomes was investigated in the presence of the Ca-EGTA buffer system and showed the affinity of PBM Ca(2+)-ATPase for Ca(2+) of about 0.1 µM. The transport activity of Ca(2+)-ATPase was inhibited by erythrosin B as well as orthovanadate, but markedly stimulated by calmodulin from bovine brain. These results allowed us to conclude that this enzyme belongs to IIB-type Ca(2+)-ATPases which are present in other plant membranes.


Subject(s)
Calcium-Transporting ATPases/metabolism , Calcium/metabolism , Root Nodules, Plant/enzymology , Root Nodules, Plant/metabolism , Adenosine Triphosphate/metabolism , Antimony/pharmacology , Biological Transport/drug effects , Calmodulin/pharmacology , Cytidine Triphosphate/metabolism , Erythrosine/pharmacology , Guanosine Triphosphate/metabolism , Inosine Triphosphate/metabolism , Uridine Triphosphate/metabolism , Vanadates/pharmacology
13.
Nucleosides Nucleotides Nucleic Acids ; 30(11): 839-49, 2011 Nov.
Article in English | MEDLINE | ID: mdl-22060550

ABSTRACT

The role of inosine triphosphatase (ITPase) in adverse drug reactions associated with thiopurine therapy is still under heavy debate. Surprisingly, little is known about the way thiopurines are handled by ITPase. We studied the effect of ITPA polymorphisms on the handling of inosine triphosphate (ITP) and thioinosine triphosphate (TITP) to gain more insight into this phenomenon. Human erythrocyte ITPase activity was measured by incubation with ITP using established protocols, and the generated inosine monophosphate (IMP) was measured using ion-pair RP-HPLC. Molecular analysis of the ITPA gene was performed to establish the genotype. Kinetic parameters were established for the two common polymorphisms for both ITP and TITP as substrates using the above mentioned protocol. Both ITP and TITP are substrates for ITPase and their enzyme activities are comparable. Substrate binding is not altered in the different ITPA polymorphisms. It is shown that the velocity of pyrophosphohydrolysis is compromised when the c.94C > A polymorphism is present, both in the heterozygous and in the homozygous state. TITP is handled by ITPase in a similar way as for ITP, which implies that TITP will accumulate in the erythrocytes of patients with an ITPase deficiency, resulting in adverse drug reactions (ADRs) on thiopurine therapy. In carriers of ITPA polymorphisms, the matter is more complex and the development of ADR may depend on additional epigenetic factors rather than on the accumulation of thiopurinenucleotides.


Subject(s)
Erythrocytes/enzymology , Inosine Triphosphate/metabolism , Polymorphism, Genetic , Pyrophosphatases/genetics , Pyrophosphatases/metabolism , Thioinosine/metabolism , Erythrocytes/metabolism , Humans , Polyphosphates/metabolism , Substrate Specificity , Inosine Triphosphatase
14.
Biochem J ; 437(2): 243-53, 2011 Jul 15.
Article in English | MEDLINE | ID: mdl-21548881

ABSTRACT

Genomes of all free-living organisms encode the enzyme dUTPase (dUTP pyrophosphatase), which plays a key role in preventing uracil incorporation into DNA. In the present paper, we describe the biochemical and structural characterization of DUT1 (Saccharomyces cerevisiae dUTPase). The hydrolysis of dUTP by DUT1 was strictly dependent on a bivalent metal cation with significant activity observed in the presence of Mg2+, Co2+, Mn2+, Ni2+ or Zn2+. In addition, DUT1 showed a significant activity against another potentially mutagenic nucleotide: dITP. With both substrates, DUT1 demonstrated a sigmoidal saturation curve, suggesting a positive co-operativity between the subunits. The crystal structure of DUT1 was solved at 2 Å resolution (1 Å=0.1 nm) in an apo state and in complex with the non-hydrolysable substrate α,ß-imido dUTP or dUMP product. Alanine-replacement mutagenesis of the active-site residues revealed seven residues important for activity including the conserved triad Asp87/Arg137/Asp85. The Y88A mutant protein was equally active against both dUTP and UTP, indicating that this conserved tyrosine residue is responsible for discrimination against ribonucleotides. The structure of DUT1 and site-directed mutagenesis support a role of the conserved Phe142 in the interaction with the uracil base. Our work provides further insight into the molecular mechanisms of substrate selectivity and catalysis of dUTPases.


Subject(s)
Pyrophosphatases/metabolism , Saccharomyces cerevisiae/enzymology , Amino Acid Sequence , Catalytic Domain , Cations, Divalent/pharmacology , Crystallography, X-Ray , Deoxyuracil Nucleotides , Inosine Triphosphate/analogs & derivatives , Inosine Triphosphate/metabolism , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Pyrophosphatases/chemistry , Saccharomyces cerevisiae/genetics , Sequence Alignment , Substrate Specificity
15.
Bull Exp Biol Med ; 151(3): 275-7, 2011 Jul.
Article in English, Russian | MEDLINE | ID: mdl-22451864

ABSTRACT

Ca(2+)-mediated signal transduction of group I metabotropic glutamate receptors (ImGluR) was studied in the brain of young (15 days) and old rats (90 days) exposed to severe hypobaric hypoxia on gestation days 14-16. Changes in the concentration of bound intracellular Ca(2+) (Ca(2+) response) were evaluated after repeated application of a selective ImGluR agonist 3,5-dihydroxyphenylglycine (DHPG) to cultured brain slices. Primary application of DHPG for 2 min induced a negative Ca(2+) response in slices from 15-day-old intact animals, while repeated application caused a positive response. In slices from 90-day-old control animals, both responses were negative. In slices from rats of both age groups subjected to severe prenatal hypobaric hypoxia, both responses were mainly positive, but short-term negative components were present in adult animals. Our results suggest that severe hypobaric hypoxia changes the balance between the two constitutive signal pathways triggered by ImGluR (inosine triphosphate and diacylglycerol pathways). This procedure is followed by the increased influx of extracellular Ca(2+) (as compared to Ca(2+) release from the intracellular stores). This imbalance is particularly pronounced at the early stage of ontogeny.


Subject(s)
Brain/metabolism , Calcium/metabolism , Fetal Hypoxia/metabolism , Receptors, Metabotropic Glutamate/metabolism , Signal Transduction , Animals , Diglycerides/metabolism , Excitatory Amino Acid Agents/pharmacology , Female , Glycine/analogs & derivatives , Glycine/pharmacology , Inosine Triphosphate/metabolism , Male , Pregnancy , Prenatal Exposure Delayed Effects , Rats , Rats, Wistar , Receptors, Metabotropic Glutamate/agonists , Resorcinols/pharmacology , Tissue Culture Techniques
16.
Nucleic Acids Res ; 38(14): 4834-43, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20385596

ABSTRACT

Nucleotides function in a variety of biological reactions; however, they can undergo various chemical modifications. Such modified nucleotides may be toxic to cells if not eliminated from the nucleotide pools. We performed a screen for modified-nucleotide binding proteins and identified human nucleoside diphosphate linked moiety X-type motif 16 (NUDT16) protein as an inosine triphosphate (ITP)/xanthosine triphosphate (XTP)/GTP-binding protein. Recombinant NUDT16 hydrolyzes purine nucleoside diphosphates to the corresponding nucleoside monophosphates. Among 29 nucleotides examined, the highest k(cat)/K(m) values were for inosine diphosphate (IDP) and deoxyinosine diphosphate (dIDP). Moreover, NUDT16 moderately hydrolyzes (deoxy)inosine triphosphate ([d]ITP). NUDT16 is mostly localized in the nucleus, and especially in the nucleolus. Knockdown of NUDT16 in HeLa MR cells caused cell cycle arrest in S-phase, reduced cell proliferation, increased accumulation of single-strand breaks in nuclear DNA as well as increased levels of inosine in RNA. We thus concluded that NUDT16 is a (deoxy)inosine diphosphatase that may function mainly in the nucleus to protect cells from deleterious effects of (d)ITP.


Subject(s)
Acid Anhydride Hydrolases/metabolism , DNA Breaks, Single-Stranded , Pyrophosphatases/metabolism , Acid Anhydride Hydrolases/deficiency , Acid Anhydride Hydrolases/genetics , Amino Acid Sequence , Cell Nucleus/chemistry , Cell Proliferation , Gene Knockdown Techniques , Guanosine Triphosphate/metabolism , HeLa Cells , Humans , Inosine Nucleotides/metabolism , Inosine Triphosphate/metabolism , Molecular Sequence Data , Pyrophosphatases/deficiency , Pyrophosphatases/genetics , Ribonucleotides/metabolism
17.
J Clin Endocrinol Metab ; 95(6): 2902-8, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20382690

ABSTRACT

CONTEXT: Studies have shown that labor occurs primarily in the night/morning hours. Recently, we identified the human myometrium as a target for melatonin (MEL), the neuroendocrine output signal coding for circadian night. OBJECTIVE: The purpose of this study was to determine the signaling pathway underlying the effects of MEL on contractility and the contractile machinery in immortalized human myometrial cells. DESIGN: To ascertain the signaling pathway of MEL leading to its effects on myometrial contractility in vitro, we performed gel retraction assays with cells exposed to iodo-MEL (I-MEL) with or without oxytocin and the Rho kinase inhibitor Y27632. I-MEL effects on inositol trisphosphate (IP(3))/diacylglycerol (DAG)/protein kinase C (PKC) signaling were also investigated. Additionally, we assayed for caldesmon phosphorylation and ERK1/2 activation. RESULTS: I-MEL was found to activate PKC alpha via the phospholipase C/IP(3)/DAG signaling pathway, which was confirmed by PKC enzyme assay. I-MEL did not affect myosin light chain phosphatase activity, and its effects on contractility were insensitive to Rho kinase inhibition. I-MEL did increase phosphorylation of ERK1/2 and caldesmon, which was inhibited by the MAPK kinase inhibitor PD98059 or the PKC inhibitor C1. CONCLUSIONS: MEL sensitizes myometrial cells to subsequent procontractile signals in vitro through activation of the phospholipase C/IP(3)/DAG signaling pathway, resulting in specific activation of PKC alpha and ERK1/2, thereby phosphorylating caldesmon, which increases actin availability for myosin binding and cross-bridging. In vivo, this sensitization would provide a mechanism for the increased nocturnal uterine contractility and labor that has been observed in late-term human pregnancy.


Subject(s)
Extracellular Signal-Regulated MAP Kinases/physiology , Melatonin/pharmacology , Myometrium/drug effects , Oxytocin/pharmacology , Protein Kinase C-alpha/physiology , Blotting, Western , Calmodulin-Binding Proteins/metabolism , Extracellular Signal-Regulated MAP Kinases/antagonists & inhibitors , Female , Humans , Immunoprecipitation , Inosine Triphosphate/metabolism , Muscle Contraction/physiology , Myocytes, Smooth Muscle/drug effects , Myocytes, Smooth Muscle/enzymology , Myocytes, Smooth Muscle/metabolism , Myometrium/cytology , Myosin Light Chains/metabolism , Myosin-Light-Chain Kinase/metabolism , Myosins/metabolism , Phosphorylation , Protein Kinase C-alpha/antagonists & inhibitors , Signal Transduction/drug effects , rho-Associated Kinases/antagonists & inhibitors , rho-Associated Kinases/metabolism
18.
Nucleic Acids Res ; 38(9): 2891-903, 2010 May.
Article in English | MEDLINE | ID: mdl-20081199

ABSTRACT

Mammalian inosine triphosphatase encoded by ITPA gene hydrolyzes ITP and dITP to monophosphates, avoiding their deleterious effects. Itpa(-) mice exhibited perinatal lethality, and significantly higher levels of inosine in cellular RNA and deoxyinosine in nuclear DNA were detected in Itpa(-) embryos than in wild-type embryos. Therefore, we examined the effects of ITPA deficiency on mouse embryonic fibroblasts (MEFs). Itpa(-) primary MEFs lacking ITP-hydrolyzing activity exhibited a prolonged doubling time, increased chromosome abnormalities and accumulation of single-strand breaks in nuclear DNA, compared with primary MEFs prepared from wild-type embryos. However, immortalized Itpa(-) MEFs had neither of these phenotypes and had a significantly higher ITP/IDP-hydrolyzing activity than Itpa(-) embryos or primary MEFs. Mammalian NUDT16 proteins exhibit strong dIDP/IDP-hydrolyzing activity and similarly low levels of Nudt16 mRNA and protein were detected in primary MEFs derived from both wild-type and Itpa(-) embryos. However, immortalized Itpa(-) MEFs expressed significantly higher levels of Nudt16 than the wild type. Moreover, introduction of silencing RNAs against Nudt16 into immortalized Itpa(-) MEFs reproduced ITPA-deficient phenotypes. We thus conclude that NUDT16 and ITPA play a dual protective role for eliminating dIDP/IDP and dITP/ITP from nucleotide pools in mammals.


Subject(s)
Acid Anhydride Hydrolases/physiology , Chromosomal Instability , Inosine Diphosphate/metabolism , Inosine Triphosphate/metabolism , Pyrophosphatases/physiology , Acid Anhydride Hydrolases/metabolism , Animals , Cell Proliferation , Cells, Cultured , Inosine Nucleotides/metabolism , Inosine Triphosphate/analogs & derivatives , Mice , Mice, Knockout , Phenotype , Pyrophosphatases/genetics , Pyrophosphatases/metabolism , Inosine Triphosphatase
19.
J Anesth ; 23(3): 385-91, 2009.
Article in English | MEDLINE | ID: mdl-19685119

ABSTRACT

PURPOSE: This study was designed to investigate the action of amitriptyline, a tricyclic antidepressant, on airway smooth muscle reactivity and its underlying mechanisms. METHODS: In isolated rat trachea, isometric force was recorded to examine the effects of amitriptyline on the contractile response to acetylcholine (ACh), electrical field stimulation (EFS), calyculin A (a myosin light chain phosphatase inhibitor), and sphingosylphosphorylcholine (SPC; a Rhokinase activator). In addition, inositol monophosphate (IP1) accumulation was measured to examine its effects on inositol 1, 4, 5-trisphosphate (IP(3)) production during stimulation with ACh. RESULTS: Amitriptyline inhibited the contractile responses to ACh, EFS, calyculin A, and SPC, with the concentrations of amitriptyline (mean +/- SD) required to exert 50% inhibition (IC(50)) being 4.3 +/- 1.3 microM, 3.2 +/- 1.6 microM, 256.4 +/- 106.4 microM, and 98.2 +/- 21.8 microM, respectively. In addition, amitriptyline (10 microM) eliminated the ACh (10 microM)-induced IP(1) accumulation. CONCLUSION: The results suggest that amitriptyline does not influence tracheal smooth muscle reactivity at clinical concentrations (<1 microM), but attenuates the reactivity at supraclinical concentrations (> or =1 microM). The attenuated response to ACh brought about by amitriptyline is presumably due, at least in part, to the inhibition of phosphatidylinositol (PI) metabolism. The ability of amitriptyline to inhibit the calyculin Ainduced contraction suggests that amitriptyline also inhibits the Ca(2+)-calmodulin-myosin light chain pathway independently of the inhibition of PI metabolism. Finally, the difference between the IC(50) values for SPC-induced contraction and those for calyculin A-induced contraction suggests that amitriptyline may also inhibit the Rho-kinase pathway.


Subject(s)
Amitriptyline/pharmacology , Antidepressive Agents, Tricyclic/pharmacology , Muscle, Smooth/drug effects , Trachea/drug effects , Acetylcholine/metabolism , Adrenergic Uptake Inhibitors/pharmacology , Animals , Calcium-Calmodulin-Dependent Protein Kinases/antagonists & inhibitors , Calcium-Calmodulin-Dependent Protein Kinases/metabolism , Electric Stimulation , Enzyme Inhibitors/pharmacology , In Vitro Techniques , Inosine Triphosphate/metabolism , Isometric Contraction/drug effects , Myosin-Light-Chain Kinase/antagonists & inhibitors , Myosin-Light-Chain Kinase/metabolism , Myosin-Light-Chain Phosphatase/antagonists & inhibitors , Norepinephrine/metabolism , Phosphatidylinositols/metabolism , Rats , rho-Associated Kinases/antagonists & inhibitors
20.
Hypertens Res ; 32(10): 846-52, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19662022

ABSTRACT

The kidney is important in the long-term regulation of blood pressure and sodium homeostasis. Stimulation of ETB receptors in the kidney increases sodium excretion, in part, by decreasing sodium transport in the medullary thick ascending limb of Henle and in collecting duct. However, the role of ETB receptor on Na(+)-K(+) ATPase activity in renal proximal tubule (RPT) cells is not well defined. The purpose of this study is to test the hypothesis that ETB receptor inhibits Na(+)-K(+) ATPase activity in rat RPT cells, and investigate the mechanism(s) by which such an action is produced. In RPT cells from Wistar-Kyoto rats, stimulation of ETB receptors by the ETB receptor agonist, BQ3020, decreased Na(+)-K(+) ATPase activity, determined by ATP hydrolysis (control=0.38+/-0.02, BQ3020=0.26+/-0.03, BQ788=0.40+/-0.06, BQ3020+BQ788=0.37+/-0.04, n=5, P<0.01). The ETB receptor-mediated inhibition of Na(+)-K(+) ATPase activity was dependent on an increase in intracellular calcium, because this effect was abrogated by a chelator of intracellular-free calcium (BAPTA-AM; 5 x 10(-3) M 15 min(-1)), Ca(2+) channel blocker (10(-6) M 15 min(-1) nicardipine) and PI3 kinase inhibitor (10(-7) M per wortmannin). An inositol 1,4,5-trisphosphate (IP3) receptor blocker (2-aminoethyl diphenyl borate; 10(-4) M 15 min(-1)) also blocked the inhibitory effect of the ETB receptor on Na(+)-K(+)ATPase activity (control=0.39+/-0.06, BQ3020=0.25+/-0.01, 2-APB=0.35+/-0.05, BQ3020+ 2-APB=0.35+/-0.06, n=4, P<0.01). The calcium channel agonist (BAY-K8644; 10(-6) M 15 min(-1)) inhibited Na(+)-K(+) ATPase activity, an effect that was blocked by a phosphatidylinositol-3 kinase inhibitor (10(-7) M 15 min(-1) wortmannin). In rat RPT cells, activation of the ETB receptor inhibits Na(+)-K(+) ATPase activity by facilitating extracellular Ca(2+) entry and Ca(2+) release from endoplasmic reticulum.


Subject(s)
Calcium Signaling/physiology , Calcium/metabolism , Endoplasmic Reticulum/metabolism , Kidney Tubules, Proximal/metabolism , Receptor, Endothelin B/physiology , Sodium-Potassium-Exchanging ATPase/metabolism , Animals , Cell Line , Endothelins/pharmacology , Enzyme Inhibitors/pharmacology , Humans , Inosine Triphosphate/metabolism , Kidney Tubules, Proximal/cytology , Peptide Fragments/pharmacology , Phosphatidylinositol 3-Kinases/metabolism , Rats , Rats, Inbred WKY , Receptor, Endothelin B/agonists , Second Messenger Systems/physiology , Sodium-Potassium-Exchanging ATPase/antagonists & inhibitors
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