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1.
Prep Biochem Biotechnol ; 52(1): 70-79, 2022.
Article in English | MEDLINE | ID: mdl-33941018

ABSTRACT

The newly isolated Burkholderia gladioli BRM58833 strain was shown to secrete an alkaline lipase highly active and stable in organic solvents. Lipase production was optimized through the cultivation of the strain by solid-state fermentation in wheat bran. The lipase extraction conditions were also optimized. The low-cost extract obtained has shown a high hydrolytic activity of 1096.7 ± 39.3 U·gds-1 (units per gram of dry solids) against pNPP and 374.2 ± 20.4 U·gds-1 against triolein. Proteomic analysis revealed the optimized extract is composed of two esterases and three true lipases, showing a preference for long-chain substrates. The highest activity was obtained at 50 °C and pH 9. However, the extract maintained more than 50% of its maximum activity between pH 8.0 and 10.0 and throughout the whole temperature range evaluated (32-70 °C). The enzymes were inhibited by SDS, EDTA, ZnSO4 and FeCl3 and activated by FeSO4, MgCl2 and BaCl2. The lipases conserved their activity when incubated in solvents as acetonitrile, diethyl ether, n-heptane n-hexane, toluene, methanol and t-butanol. The resistance of these lipases to solvents and expressive thermostability when compared to other lipases, reveal their potential both in hydrolysis reactions and in synthesis of esters.


Subject(s)
Bacterial Proteins/metabolism , Burkholderia gladioli/metabolism , Lipase/metabolism , Bacterial Proteins/isolation & purification , Burkholderia gladioli/isolation & purification , Enzyme Stability , Fermentation , Hydrogen-Ion Concentration , Hydrolysis , Lipase/isolation & purification , Proteomics , Substrate Specificity
2.
Acta Chim Slov ; 68(3): 575-586, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34897543

ABSTRACT

This work mainly focused on the production of an efficient, economical, and eco-friendly lipase (AKL29) from Actinomadura keratinilytica strain Cpt29 isolated from poultry compost in north east of Algeria, for use in detergent industries. AKL29 shows a significant lipase activity (45 U/mL) towards hydrolyzed triacylglycerols, indicating that it is a true lipase. For maximum lipase production the modeling and optimization of potential culture parameters such as incubation temperature, cultivation time, and Tween 80 (v/v) were built using RSM and ANN approaches. The results show that both the two models provided good quality predictions, yet the ANN showed a clear superiority over RSM for both data fitting and estimation capabilities. A 4.1-fold increase in lipase production was recorded under the following optimal condition: incubation temperature (37.9 °C), cultivation time (111 h), and Tween 80 (3.27%, v/v). Furthermore, the partially purified lipase showed good stability, high compatibility, and significant wash performance with various commercial laundry detergents, making this novel lipase a promising potential candidate for detergent industries.


Subject(s)
Actinomadura/enzymology , Bacterial Proteins/chemistry , Detergents/chemistry , Lipase/chemistry , Bacterial Proteins/isolation & purification , Enzyme Stability , Fungal Proteins/chemistry , Kinetics , Lipase/isolation & purification , Neural Networks, Computer , Saccharomycetales/enzymology , Triglycerides/chemistry
3.
Microb Cell Fact ; 20(1): 232, 2021 Dec 28.
Article in English | MEDLINE | ID: mdl-34963459

ABSTRACT

BACKGROUND: Proteins with novel functions or advanced activities developed by various protein engineering techniques must have sufficient solubility to retain their bioactivity. However, inactive protein aggregates are frequently produced during heterologous protein expression in Escherichia coli. To prevent the formation of inclusion bodies, fusion tag technology has been commonly employed, owing to its good performance in soluble expression of target proteins, ease of application, and purification feasibility. Thus, researchers have continuously developed novel fusion tags to expand the expression capacity of high-value proteins in E. coli. RESULTS: A novel fusion tag comprising carbohydrate-binding module 66 (CBM66) was developed for the soluble expression of heterologous proteins in E. coli. The target protein solubilization capacity of the CBM66 tag was verified using seven proteins that are poorly expressed or form inclusion bodies in E. coli: four human-derived signaling polypeptides and three microbial enzymes. Compared to native proteins, CBM66-fused proteins exhibited improved solubility and high production titer. The protein-solubilizing effect of the CBM66 tag was compared with that of two commercial tags, maltose-binding protein and glutathione-S-transferase, using poly(ethylene terephthalate) hydrolase (PETase) as a model protein; CBM66 fusion resulted in a 3.7-fold higher expression amount of soluble PETase (approximately 370 mg/L) compared to fusion with the other commercial tags. The intact PETase was purified from the fusion protein upon serial treatment with enterokinase and affinity chromatography using levan-agarose resin. The bioactivity of the three proteins assessed was maintained even when the CBM66 tag was fused. CONCLUSIONS: The use of the CBM66 tag to improve soluble protein expression facilitates the easy and economic production of high-value proteins in E. coli.


Subject(s)
Carbohydrates/chemistry , Escherichia coli/metabolism , Protein Engineering/methods , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/genetics , Alcohol Dehydrogenase/biosynthesis , Alcohol Dehydrogenase/isolation & purification , Bacterial Proteins/biosynthesis , Bacterial Proteins/isolation & purification , Bone Morphogenetic Protein 7/biosynthesis , Bone Morphogenetic Protein 7/isolation & purification , Carrier Proteins/biosynthesis , Carrier Proteins/isolation & purification , Cloning, Molecular , Epidermal Growth Factor/biosynthesis , Epidermal Growth Factor/isolation & purification , Fungal Proteins/biosynthesis , Fungal Proteins/isolation & purification , Gene Expression , Humans , Hydrolases/biosynthesis , Hydrolases/isolation & purification , Inclusion Bodies/metabolism , Lipase/biosynthesis , Lipase/isolation & purification , Maltose-Binding Proteins , Protein Processing, Post-Translational , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/isolation & purification , Solubility , Vascular Endothelial Growth Factor A/biosynthesis , Vascular Endothelial Growth Factor A/isolation & purification
4.
Int J Biol Macromol ; 192: 1292-1303, 2021 Dec 01.
Article in English | MEDLINE | ID: mdl-34687760

ABSTRACT

In this study, due to the favorable properties of MOF compounds and fibrous materials, new nanostructures of Zr-MOF/PVP nanofibrous composites were synthesized by electrospinning procedure. The related features of these samples were characterized by relevant analyzes, including SEM, BET surface area analysis, XRD, and FTIR spectroscopy. The final product showed significant properties such as small particle size distribution, large surface area, and high crystallinity. This strategy for producing these nanostructures could lead to new compounds as novel alternative materials for biological applications. Lipase MG10 was successfully immobilized on the mentioned nanofibrous composites and biochemically characterized. The lipase activity of free and immobilized lipases was considered by measuring the absorbance of pNPP (500 µM in 40 mM Tris/HCl buffer, pH 7.8, and 0.01% Triton X100) at 37 °C for 30 min. Different concentrations of glutaraldehyde, different crosslinking times, different times of immobilization, different enzyme loading, and different pH values have been optimized. Results showed that the optimized immobilization condition was achieved in 2.5% glutaraldehyde, after 2 h of crosslinking time, after 6 h immobilization time, using 180 mg protein/g support at pH 9.0. The immobilized enzyme was also totally stable after 180 min incubation at 60 °C. The free enzyme showed the maximum activity at pH 9.0, but the optimal pH of the immobilized lipase was shifted about 1.5 pH units to the alkaline area. The immobilized lipase showed about 2.7 folds (78%) higher stability than the free enzyme at 50 °C. Some divalent metal ions, including Cu2+ (22%), Co2+ (37%), Mg2+ (12%), Hg2+ (11%), and Mn2+ (17%) enhanced the enzyme activity of immobilized enzyme. The maximum biodiesel production (27%) from R. communis oil was obtained after 18 h of incubation by lipase MG10. The immobilized lipase displayed high potency in biodiesel production, about 83% after 12 h of incubation. These results indicated the high potency of Zr-MOF/PVP nanofibrous composites for efficient lipase immobilization.


Subject(s)
Enzymes, Immobilized , Lipase/chemistry , Nanofibers/chemistry , Polymers/chemistry , Bacterial Proteins , Biofuels , Chemical Phenomena , Enzyme Stability , Hydrogen-Ion Concentration , Kinetics , Lipase/isolation & purification , Nanofibers/ultrastructure , Nanostructures/chemistry , Polyvinyls/chemistry , Pyrrolidines/chemistry , Solvents/chemistry , Spectrum Analysis
5.
Biotechnol Lett ; 43(12): 2311-2325, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34698972

ABSTRACT

A novel lipase, Lip486, which has no obvious homology with known lipases, was discovered using functional metagenomics technology. Phylogenetic tree analysis suggested that the enzyme belongs to a new subfamily called lipolytic enzyme family II. To explore the enzymatic properties, lip486 was expressed heterologously and efficiently in Escherichia coli. The recombinant enzyme displayed the highest activity on the substrate p-nitrophenyl caprate with a carbon chain length of 10, and its optimum temperature and pH were 53 °C and 8.0, respectively. The recombinant Lip486 showed good activity and stability in strong alkaline and medium-low-temperature environments. The results of compatibility and soaking tests showed that the enzyme had good compatibility with 4 kinds of commercial detergents, and an appropriate soaking time could further improve the enzyme activity. Oil stain removal test results for a cotton cloth indicated that the washing performance of commercial laundry detergent supplemented with Lip486 was further improved. In addition, as one of the smallest lipases found to date, Lip486 also has the advantages of high yield, good stability and easy molecular modification. These characteristics reflect the good application prospects for Lip486 in the detergent and other industries in the future.


Subject(s)
Detergents/chemistry , Lipase/chemistry , Metagenome/genetics , Detergents/pharmacology , Enzyme Stability , Hydrogen-Ion Concentration , Lipase/genetics , Lipase/isolation & purification , Lipase/pharmacology , Metagenomics , Phylogeny , Substrate Specificity , Temperature
6.
J Biol Chem ; 297(4): 101206, 2021 10.
Article in English | MEDLINE | ID: mdl-34543623

ABSTRACT

Adipose triglyceride lipase (ATGL) plays a key role in intracellular lipolysis, the mobilization of stored triacylglycerol. This work provides an important basis for generating reproducible and detailed data on the hydrolytic and transacylation activities of ATGL. We generated full-length and C-terminally truncated ATGL variants fused with various affinity tags and analyzed their expression in different hosts, namely E.coli, the insect cell line Sf9, and the mammalian cell line human embryonic kidney 293T. Based on this screen, we expressed a fusion protein of ATGL covering residues M1-D288 flanked with N-terminal and C-terminal purification tags. Using these fusions, we identified key steps in expression and purification protocols, including production in the E. coli strain ArcticExpress (DE3) and removal of copurified chaperones. The resulting purified ATGL variant demonstrated improved lipolytic activity compared with previously published data, and it could be stimulated by the coactivator protein comparative gene identification-58 and inhibited by the protein G0/G1 switch protein 2. Shock freezing and storage did not affect the basal activity but reduced coactivation of ATGL by comparative gene identification 58. In vitro, the truncated ATGL variant demonstrated acyl-CoA-independent transacylation activity when diacylglycerol was offered as substrate, resulting in the formation of fatty acid as well as triacylglycerol and monoacylglycerol. However, the ATGL variant showed neither hydrolytic activity nor transacylation activity upon offering of monoacylglycerol as substrate. To understand the role of ATGL in different physiological contexts, it is critical for future studies to identify all its different functions and to determine under what conditions these activities occur.


Subject(s)
Gene Expression , Lipase , Acylation , Animals , HEK293 Cells , Humans , Hydrolysis , Lipase/biosynthesis , Lipase/chemistry , Lipase/genetics , Lipase/isolation & purification , Mice , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Sf9 Cells , Spodoptera
7.
ScientificWorldJournal ; 2021: 1424675, 2021.
Article in English | MEDLINE | ID: mdl-34504407

ABSTRACT

OBJECTIVES: To explore the effective and safe medicines for treating diabetes. METHODS: Hydroalcoholic extracts of 130 medicinal plants belonging to 66 families were evaluated using porcine pancreatic lipase (PPL) inhibition and glucose uptake methods together with a literature review. RESULTS: The extracts of 22 species showed the PPL inhibition activity; 18 extracts of 15 species stimulated glucose uptake in 3T3-L1 adipocytes. Among them, Mansonia gagei J.R. Drumm., Mesua ferrea L., and Centella asiatica (L.) Urb. exhibited both activities. The extracts of Caladium lindenii (André) Madison rhizomes and Azadirachta indica A. Juss. leaves presented the utmost lipase inhibitory activity with IC50 of 6.86 ± 0.25 and 11.46 ± 0.06 µg/mL, respectively. The extracts of Coptis teeta Wall. rhizomes and Croton tiglium L. seeds stimulated the maximum glucose uptake. Ten species are reported to have antidiabetic activity for the first time. Flavonoids and triterpenoids are the dominant antidiabetic compounds in selected medicinal plants from Myanmar. CONCLUSIONS: P. zeylanica, L. cubeba, H. crenulate, M. gagei, C. teeta, and M. ferrea are worthy to advance further study according to their strong antidiabetic activities and limited research on effects in in vivo animal studies, unclear chemical constitutes, and safety.


Subject(s)
Azadirachta/chemistry , Centella/chemistry , Coptis/chemistry , Croton/chemistry , Hypoglycemic Agents/pharmacology , Malvaceae/chemistry , 3T3-L1 Cells , Animals , Biological Transport/drug effects , Diabetes Mellitus/drug therapy , Diabetes Mellitus/metabolism , Flavonoids/classification , Flavonoids/isolation & purification , Flavonoids/pharmacology , Glucose/metabolism , Humans , Hypoglycemic Agents/chemistry , Hypoglycemic Agents/isolation & purification , Lipase/antagonists & inhibitors , Lipase/isolation & purification , Lipase/metabolism , Mice , Myanmar , Pancreas/chemistry , Pancreas/enzymology , Phytotherapy/methods , Plant Extracts/chemistry , Plant Leaves/chemistry , Plants, Medicinal , Rhizome/chemistry , Swine , Triterpenes/classification , Triterpenes/isolation & purification , Triterpenes/pharmacology
8.
Future Microbiol ; 16: 487-507, 2021 05.
Article in English | MEDLINE | ID: mdl-33960821

ABSTRACT

Aim: The confirmation of lipolytic activity and role of Rv1900c in the Mycobacterium physiology Methods:rv1900c/N-terminus domain (rv1900NT) were cloned in pET28a/Escherichia coli, purified by affinity chromatography and characterized. Results: A zone of clearance on tributyrin-agar and activity with pNP-decanoate confirmed the lipolytic activity of Rv1900c. The Rv1900NT demonstrated higher enzyme specific activity, Vmax and kcat, but Rv1900c was more thermostable. The lipolytic activity of Rv1900c decreased in presence of ATP. Mycobacterium smegmatis expressed rv1900c/rv1900NT-altered colony morphology, growth, cell surface properties and survival under stress conditions. The effect was more prominent with Rv1900NT as compared with Rv1900c. Conclusion: The study confirmed the lipolytic activity of Rv1900c and suggested its regulation by the adenylate cyclase domain and role in the intracellular survival of bacteria.


Lay abstract Tuberculosis (TB) remains the top contagious/infectious killer in the world. It is caused by the bacteria Mycobacterium tuberculosis. The bacteria resides/replicates in the immune cell that normally has to eradicate infectious microorganisms. Though the treatment of TB is available, the emergence of drug-resistant bacteria is of major concern. The treatment of drug-resistant TB has been reported to be more difficult due to lengthy and complex treatment regimens. Therefore, there is an urgent need for new and better drugs to treat TB/drug-resistant TB. For this purpose understanding the role of each protein in the physiology of mycobacteria is required. Lipids play a critical role in the intracellular survival of this pathogen in the host. Our study demonstrated that LipJ supported the intracellular survival of bacteria. Therefore, it could be a potential drug target.


Subject(s)
Adenylyl Cyclases/metabolism , Bacterial Proteins/metabolism , Lipase/metabolism , Adenosine Triphosphate/metabolism , Adenylyl Cyclases/chemistry , Adenylyl Cyclases/genetics , Adenylyl Cyclases/isolation & purification , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Biofilms/growth & development , Catalytic Domain , Cell Wall/physiology , Cloning, Molecular , Enzyme Stability , Hydrogen-Ion Concentration , Lipase/chemistry , Lipase/genetics , Lipase/isolation & purification , Lipolysis , Mycobacterium smegmatis/genetics , Mycobacterium smegmatis/physiology , Mycobacterium tuberculosis/enzymology , Mycobacterium tuberculosis/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Stress, Physiological , Temperature
9.
Protein J ; 40(3): 436-447, 2021 06.
Article in English | MEDLINE | ID: mdl-33856621

ABSTRACT

Lipases are versatile biocatalysts with many biotechnological applications and the necessity of screening, production and characterization of new lipases from diverse microbial strains to meet industrial needs is constantly emerging. In this study, the lipase gene (gklip) from a thermophilic bacterium, Geobacillus kaustophilus DSM 7263 T was cloned into the pET28a ( +) vector with N-terminal 6xHis-tag. The recombinant gklip gene was heterologously expressed in host E. coli BL21 (DE3) cells and purified by Ni-NTA affinity chromatography. Histidine tag was removed from the purified 6xHistag-Gklip enzyme with thrombin enzyme and the molecular mass was determined to be approximately 43 kDa by SDS-PAGE. Gklip showed optimal activity at pH 8.0 and 50 °C. The specific hydrolytic activities against substrates were significantly increased by the removal of the His-tag. Km and kcat values of Gklip against p-nitrophenyl palmitate (pNPP, 4-nitrophenyl palmitate) as the target substrate were found to be as 1.22 mM and 417.1 min-1, respectively. Removing His-tag changed the substrate preference of the enzyme leading to maximum lipolytic activity towards C10 and C12 lipids. Similarly, the activity against coconut oil that containing 62% medium-chain fatty acids was significantly higher than other oils. Furthermore, preservation of activity in the presence of inhibitors, organic solvents support the effect of lid structure of the enzyme.


Subject(s)
Bacterial Proteins , Epitopes , Geobacillus/genetics , Lipase , Recombinant Fusion Proteins , Bacterial Proteins/biosynthesis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Epitopes/biosynthesis , Epitopes/chemistry , Epitopes/genetics , Epitopes/isolation & purification , Escherichia coli/genetics , Escherichia coli/metabolism , Geobacillus/enzymology , Lipase/biosynthesis , Lipase/chemistry , Lipase/genetics , Lipase/isolation & purification , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification
10.
Int J Biol Macromol ; 181: 125-135, 2021 Jun 30.
Article in English | MEDLINE | ID: mdl-33766593

ABSTRACT

This study was aimed to produce a high compatible thermoalkaliphilic lipase (TA) with detergents from new thermophilic bacterial strains utilizing fish wastes for industrial application. Among bacterial isolates, a new Geobacillus stearothermophilus FMR12 efficiently utilized fish wastes at a concentration of 20% (w/v), exhibiting highly lipolytic activity at extreme thermal and alkaline pH conditions. Optimized fermentation parameters of TA lipase production were ascertained, promoting the productivity of the TA lipase from 424 to 1038 U/ml. Purification results of TA lipase exposed prominent specific activity of 4788 U/mg, purification fold of 12.44, and 7.8% yield. The purified TA lipase demonstrated outstanding activity and stability in a temperature range of 40-95 °C and pH (4-11), revealing optimal activity at 70 °C and pH 9. The molecular weight of the enzyme was estimated to be 63 kDa. Compared to control, the TA lipase activity was promoted in the presence of calcium chloride. Likewise, Triton X-100 enhanced the activity of the TA lipase, recording 128% of the control enzyme. Interestingly, the TA lipase conserved higher than 90% of its activity after blending with commercial detergents, emphasizing its competence for detergent formulations.


Subject(s)
Alkalies/chemistry , Detergents/chemistry , Geobacillus stearothermophilus/enzymology , Lipase/isolation & purification , Lipase/metabolism , Temperature , Evolution, Molecular , Fermentation , Geobacillus stearothermophilus/isolation & purification , Hydrogen-Ion Concentration , Ions , Metals/chemistry , Molecular Weight , Phylogeny , Solvents/chemistry
11.
Sci Rep ; 11(1): 6913, 2021 03 25.
Article in English | MEDLINE | ID: mdl-33767251

ABSTRACT

The hydrolysis properties of lipase in castor was evaluated using two different substrate forms (tripalmitic glycerides and trioleic glycerides) to catalyze the reaction under different operational conditions. RcLipase was obtained from castor seeds and results show that RcLipase is a conservative serine lipase with a conserved catalytic center (SDH) and a conserved pentapeptide (GXSXG). This enzyme exhibited the greatest activity and tolerance to chloroform and toluene when it was expressed in Pichia pastoris GS115 at 40 ℃ and pH 8.0. Zn and Cu ions exerted obvious inhibitory effects on the enzyme, and displayed good hydrolytic activity for long-chain natural and synthetic lipids. HPLC analysis showed that this enzyme has 1,3 regioselectivity when glycerol tripalmitate and oleic acid are used as substrates. The fatty acid composition in the reaction product was 21.3% oleic acid and 79.1% sn-2 palmitic acid.


Subject(s)
Lipase/metabolism , Ricinus/enzymology , Amino Acid Sequence , Hydrolysis , Lipase/chemistry , Lipase/genetics , Lipase/isolation & purification , Oleic Acids/biosynthesis , Palmitic Acid/metabolism , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/isolation & purification , Plant Proteins/metabolism , Ricinus/genetics , Saccharomycetales , Substrate Specificity
12.
Int J Biol Macromol ; 176: 413-423, 2021 Apr 15.
Article in English | MEDLINE | ID: mdl-33556405

ABSTRACT

In industrial application, immobilized lipase are typically not reused and served as industrial waste after a certain process is completed. The capacity on the reusability of the spent lipase is not well studied. This current study embarks on reusing the remaining lipase from the spent immobilized enzyme. Active lipases were recovered using a simple reverse micellar extraction (RME). RME is the extraction process of targeted biomolecules using an organic solvent and a surfactant. This method was the first attempt reported on the recovery of the lipase from the used immobilized lipase. RME of the spent lipase was done using the nonionic Triton X-100 surfactant and toluene. Various parameters were optimized to maximize the lipase recovery from the used immobilized lipase. The optimum forward extraction condition was 0.075 M KCl, and backward conditions were at 0.15 M Triton X-100/toluene (pH 6, 2 M KCl) with recovery of 66%. The extracted lipase was immobilized via simple adsorption into the ethanol pretreated carrier. The optimum conditions of immobilization resulted in 96% of the extracted lipase was reimmobilized. The reimmobilized lipase was incubated for 20 h in pH 6 buffer at 50 °C of water bath shaker. The reimmobilized lipase still had 27% residual activity after 18 h of incubation, which higher thermal stability compared to the free lipase. In conclusion, the free lipase was successfully extracted from the spent immobilized lipase and reimmobilized into the new support. It exhibited high thermal stability, and the reusability of the spent lipase will promote continued use of industrial lipase and reduce the cost of the manufacturing process.


Subject(s)
Enzymes, Immobilized , Lipase , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/isolation & purification , Hydrogen-Ion Concentration , Industrial Waste , Lipase/chemistry , Lipase/isolation & purification , Octoxynol/chemistry , Temperature , Toluene/chemistry
13.
Mar Drugs ; 19(2)2021 Jan 28.
Article in English | MEDLINE | ID: mdl-33525674

ABSTRACT

Microalgae have been poorly investigated for new-lipolytic enzymes of biotechnological interest. In silico study combining analysis of sequences homologies and bioinformatic tools allowed the identification and preliminary characterization of 14 putative lipases expressed by Chlorella vulagaris. These proteins have different molecular weights, subcellular localizations, low instability index range and at least 40% of sequence identity with other microalgal lipases. Sequence comparison indicated that the catalytic triad corresponded to residues Ser, Asp and His, with the nucleophilic residue Ser positioned within the consensus GXSXG pentapeptide. 3D models were generated using different approaches and templates and demonstrated that these putative enzymes share a similar core with common α/ß hydrolases fold belonging to family 3 lipases and class GX. Six lipases were predicted to have a transmembrane domain and a lysosomal acid lipase was identified. A similar mammalian enzyme plays an important role in breaking down cholesteryl esters and triglycerides and its deficiency causes serious digestive problems in human. More structural insight would provide important information on the enzyme characteristics.


Subject(s)
Chlorella/chemistry , Chlorella/genetics , Computational Biology/methods , Genomics/methods , Lipase/chemistry , Lipase/genetics , Amino Acid Sequence , Chlorella/isolation & purification , Lipase/isolation & purification , Microalgae/chemistry , Microalgae/genetics , Microalgae/isolation & purification , Molecular Structure , Protein Structure, Secondary , Protein Structure, Tertiary
14.
Mar Drugs ; 19(2)2021 Jan 27.
Article in English | MEDLINE | ID: mdl-33513970

ABSTRACT

Cold-adapted enzymes produced by psychrophilic organisms have elevated catalytic activities at low temperatures compared to their mesophilic counterparts. This is largely due to amino acids changes in the protein sequence that often confer increased molecular flexibility in the cold. Comparison of structural changes between psychrophilic and mesophilic enzymes often reveal molecular cold adaptation. In the present study, we performed an in-silico comparative analysis of 104 hydrolytic enzymes belonging to the family of lipases from two evolutionary close marine ciliate species: The Antarctic psychrophilic Euplotes focardii and the mesophilic Euplotes crassus. By applying bioinformatics approaches, we compared amino acid composition and predicted secondary and tertiary structures of these lipases to extract relevant information relative to cold adaptation. Our results not only confirm the importance of several previous recognized amino acid substitutions for cold adaptation, as the preference for small amino acid, but also identify some new factors correlated with the secondary structure possibly responsible for enhanced enzyme activity at low temperatures. This study emphasizes the subtle sequence and structural modifications that may help to transform mesophilic into psychrophilic enzymes for industrial applications by protein engineering.


Subject(s)
Adaptation, Physiological/physiology , Cold Temperature , Computer Simulation , Euplotes/genetics , Lipase/physiology , Amino Acid Sequence , Euplotes/chemistry , Euplotes/isolation & purification , Lipase/chemistry , Lipase/isolation & purification , Protein Structure, Secondary
15.
Int J Biol Macromol ; 174: 32-41, 2021 Mar 31.
Article in English | MEDLINE | ID: mdl-33508357

ABSTRACT

The conversion of soluble proteins into amyloid fibrils has importance in protein chemistry, biology, biotechnology and medicine. A novel lipase from Pseudomonas sp. was previously shown to have an extremely high aggregation propensity. It was therefore herein studied to elucidate the physicochemical and structural determinants of this extreme behaviour. Amyloid-like structures were found to form in samples up to 2.5-3.0 M using Thioflavin T fluorescence and Congo red binding assays. However, dynamic light scattering (DLS), static light scattering and turbidimetry revealed the existence of aggregates up to 4.0 M urea, without amyloid-like structure. Two monomeric conformational states were detected with intrinsic fluorescence, 8-anilinonaphthalene-1-sulfonate (ANS) binding and circular dichroism. These were further characterized in 7.5 M and 4.5 M urea using enzymatic activity measurements, tryptophan fluorescence quenching, DLS and nuclear magnetic resonance (NMR) and were found to consist of a largely disordered and a partially folded state, respectively, with the latter appearing stable, cooperative, fairly compact, non-active, α-helical, with largely buried hydrophobic residues. The persistence of a stable structure up to high concentrations of urea, in the absence of sequence characteristics typical of a high intrinsic aggregation propensity, explains the high tendency of this enzyme to form amyloid-like structures.


Subject(s)
Lipase/isolation & purification , Protein Folding/drug effects , Urea/chemistry , Amyloid/chemistry , Amyloidosis/metabolism , Circular Dichroism/methods , Hydrogen-Ion Concentration , Lipase/chemistry , Protein Aggregates/physiology , Protein Conformation/drug effects , Pseudomonas/genetics , Pseudomonas/metabolism
16.
Protein Expr Purif ; 180: 105819, 2021 04.
Article in English | MEDLINE | ID: mdl-33418059

ABSTRACT

Lipase producer bacterium isolated from Erzurum was identified as Aeromonas caviae LipT51 (GenBank ID: MN818567.1) by 16S rDNA sequencing and conventional methods. Extracellular lipase was purified by ammonium sulphate precipitation, centrifugal filtration, and anion-exchange chromatography resulting in 6.1-fold purification with 28% final yield. Molecular weight was 31.6 kDa on SDS-PAGE. Lipase was stable over a broad range of pH (6-11) and temperature (25-70 °C), and showed optimum activity at pH 9 and 60 °C. Km and Vmax for pNPP hydrolysis were 0.88 mM and 34.2 U/mg protein, respectively. Ba2+, Ca2+, Co2+, Cu2+, Fe3+, and Mg2+ increased activity, while Mn2+, Mo2+, Ni2+, Zn2+, and other additives partially decreased. Activity and stability increased with laundry detergent and slightly decreased with handwash and dishwashing detergents. Alkaline and thermostable lipase from newly isolated A. caviae has been shown for the first time to be remarkably compatible with laundry detergent and improve washing performance by enhanced oil-stain removal.


Subject(s)
Aeromonas caviae/genetics , Bacterial Proteins , Lipase , Aeromonas caviae/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Chemical Industry , Detergents , Enzyme Stability , Lipase/chemistry , Lipase/genetics , Lipase/isolation & purification , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification
17.
Biotechnol Appl Biochem ; 68(3): 445-458, 2021 Jun.
Article in English | MEDLINE | ID: mdl-32881094

ABSTRACT

Importance of enzymes is ever-rising particularly microbial lipases holding great industrial worth owing to their potential to catalyze a diverse array of chemical reactions in aqueous as well as nonaqueous settings. International lipase market is anticipated to cross USD 797.7 million till 2025, rising at a 6.2% compound annual growth rate from 2017 to 2025. The recent breakthrough in the field of lipase research is the generation of new and upgraded versions of lipases via molecular strategies. For example, integration of rational enzyme design and directed enzyme evolution to attain desired properties in lipases. Normally, purification of lipase with significant purity is achieved through a multistep procedure. Such multiple step approach of lipase purification entails both conventional and novel techniques. The present review attempts to provide an overview of different aspects of lipase production including fermentation techniques, factors affecting lipase production, and purification strategies, with the aim to assist researchers to pick a suitable technique for the production and purification of lipase.


Subject(s)
Bacteria/enzymology , Biotechnology , Fermentation , Fungi/enzymology , Lipase/biosynthesis , Lipase/isolation & purification , Biocatalysis , Lipase/chemistry
18.
Food Chem ; 337: 127954, 2021 Feb 01.
Article in English | MEDLINE | ID: mdl-32919268

ABSTRACT

Lipases are associated with food spoilage and are also used in various biotechnological applications. In this study, we sought to purify, identify, and characterize a lipase from S. liquefaciens isolated from cold raw cow's milk. The lipase partially purified by ultrafiltration and gel filtration showed a specific activity of 2793 U/mg. By zymography, the enzyme presented approximately 65 kDa, and LC-MS/MS allowed the identification of a polyurethanase with a conserved domain of family I.3 lipase. The modeled and validated structure of polyurethanase was able to bind to different fatty acids and urethane by molecular docking. The polyurethanase showed optimum activity at pH 8.0 and 30 °C. In the presence of ions, activity was decreased, except for Ca2+, Mg2+, and Ba2+. Reducing agents did not alter the activity, while amino acid modifiers reduced enzyme activity. It is concluded that polyurethanase with lipase activity represents a potential enzyme for the deterioration of milk and dairy products, as well as a candidate for industrial applications.


Subject(s)
Lipase/metabolism , Milk/microbiology , Serratia liquefaciens/enzymology , Animals , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Cattle , Chromatography, Gel , Chromatography, Liquid , Fatty Acids/metabolism , Female , Lipase/isolation & purification , Molecular Docking Simulation , Protein Conformation , Tandem Mass Spectrometry , Urethane/metabolism
19.
J Enzyme Inhib Med Chem ; 36(1): 248-256, 2021 Dec.
Article in English | MEDLINE | ID: mdl-33327795

ABSTRACT

A novel lipase, SCNL, was isolated from Staphylococcus caprae NCU S6 strain in the study. The lipase was purified to homogeneity with a yield of 6.13% and specific activity of 502.76 U/mg, and its molecular weight was determined to be approximately 87 kDa. SCNL maintained above 80% of its initial activity at a wide range of temperatures (20-50 °C) and pH values (6-11), with an optimal temperature at 40 °C and optimal pH at 9.0 with p-nitrophenyl palmitate as a substrate. SCNL exhibited a higher residual activity than the other staphylococcal lipases in the presence of common enzyme inhibitors and commercial detergents. The lipase activity was enhanced by organic solvents (isooctane, glycerol, DMSO and methanol) and metal ions (Na+, Ba2+, Ca2+, and Mn2+). The Km and Vmax values of SCNL were 0.695 mM and 262.66 s-1 mM-1, respectively. The enzyme showed a preference for p-NP stearate, tributyrin and canola oil. These biochemical features of SCNL suggested that it may be an excellent novel lipase candidate for industrial and biotechnological applications.


Subject(s)
Lipase , Staphylococcus/enzymology , Hydrogen-Ion Concentration , Lipase/biosynthesis , Lipase/isolation & purification , Lipase/metabolism , Phylogeny , Temperature
20.
Int J Biol Macromol ; 169: 239-250, 2021 Feb 01.
Article in English | MEDLINE | ID: mdl-33345972

ABSTRACT

In this study, SBA-15 was modified by halogen & haloalkanes and later used to immobilize lipases. The hydrolysis activity and the glycerolysis performance of the immobilized lipases was carefully studied. Highest activity of the immobilized Candida antarctica lipase B (CALB), Lipase from Aspergillus oryzae (AOL), Lecitase® Ultra (LU) and lipase from Rhizomucor miehei (RML) was respectively at 5577, 12000, 2822 and 11,577 U/g; in addition, the highest activity was obtained from the lowest or moderate lipase loading, at 25.73, 90.72, 89.52 and 30.56 mg/g respectively. The mechanism of lipase immobilization was studied and it was through interfacial activation. The halogen & haloalkanes modification of SBA-15 afforded considerable glycerolysis activity for diacylglycerols (DAG) preparation. CALB@SBA-15-CH2CH2(CF2)5CF3 and CALB@SBA-15-CH2CH2(CF2)7CF3 were suitable for DAG production, they both exhibited good reusability in glycerolysis reaction, with 117.36% and 93.06% of their initial glycerolysis activity retained respectively after ten cycles of reuse. The relationships between temperature with triacylglycerols (TAG) conversion were lnV0 = 3.13-3.07/T and lnV0 = 7.90-4.64/T respectively for CALB@SBA-15-CH2CH2(CF2)5CF3 and CALB@SBA-15-CH2CH2(CF2)7CF3; in addition, their activation energy (Ea) was respectively at 25.50 and 38.54 kJ/mol.


Subject(s)
Halogens/chemistry , Lipase/isolation & purification , Silicon Dioxide/chemistry , Basidiomycota , Biocatalysis , Candida , China , Diglycerides , Enzyme Stability , Enzymes, Immobilized/chemistry , Fungal Proteins , Hydrolysis , Lipase/chemistry , Rhizomucor , Temperature , Thermodynamics , Triglycerides
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