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1.
J Environ Sci (China) ; 147: 259-267, 2025 Jan.
Article in English | MEDLINE | ID: mdl-39003045

ABSTRACT

Arsenic (As) pollution in soils is a pervasive environmental issue. Biochar immobilization offers a promising solution for addressing soil As contamination. The efficiency of biochar in immobilizing As in soils primarily hinges on the characteristics of both the soil and the biochar. However, the influence of a specific property on As immobilization varies among different studies, and the development and application of arsenic passivation materials based on biochar often rely on empirical knowledge. To enhance immobilization efficiency and reduce labor and time costs, a machine learning (ML) model was employed to predict As immobilization efficiency before biochar application. In this study, we collected a dataset comprising 182 data points on As immobilization efficiency from 17 publications to construct three ML models. The results demonstrated that the random forest (RF) model outperformed gradient boost regression tree and support vector regression models in predictive performance. Relative importance analysis and partial dependence plots based on the RF model were conducted to identify the most crucial factors influencing As immobilization. These findings highlighted the significant roles of biochar application time and biochar pH in As immobilization efficiency in soils. Furthermore, the study revealed that Fe-modified biochar exhibited a substantial improvement in As immobilization. These insights can facilitate targeted biochar property design and optimization of biochar application conditions to enhance As immobilization efficiency.


Subject(s)
Arsenic , Charcoal , Machine Learning , Soil Pollutants , Soil , Charcoal/chemistry , Arsenic/chemistry , Soil Pollutants/chemistry , Soil Pollutants/analysis , Soil/chemistry , Models, Chemical
2.
J Environ Sci (China) ; 147: 512-522, 2025 Jan.
Article in English | MEDLINE | ID: mdl-39003067

ABSTRACT

To better understand the migration behavior of plastic fragments in the environment, development of rapid non-destructive methods for in-situ identification and characterization of plastic fragments is necessary. However, most of the studies had focused only on colored plastic fragments, ignoring colorless plastic fragments and the effects of different environmental media (backgrounds), thus underestimating their abundance. To address this issue, the present study used near-infrared spectroscopy to compare the identification of colored and colorless plastic fragments based on partial least squares-discriminant analysis (PLS-DA), extreme gradient boost, support vector machine and random forest classifier. The effects of polymer color, type, thickness, and background on the plastic fragments classification were evaluated. PLS-DA presented the best and most stable outcome, with higher robustness and lower misclassification rate. All models frequently misinterpreted colorless plastic fragments and its background when the fragment thickness was less than 0.1mm. A two-stage modeling method, which first distinguishes the plastic types and then identifies colorless plastic fragments that had been misclassified as background, was proposed. The method presented an accuracy higher than 99% in different backgrounds. In summary, this study developed a novel method for rapid and synchronous identification of colored and colorless plastic fragments under complex environmental backgrounds.


Subject(s)
Environmental Monitoring , Machine Learning , Plastics , Spectroscopy, Near-Infrared , Spectroscopy, Near-Infrared/methods , Environmental Monitoring/methods , Plastics/analysis , Least-Squares Analysis , Discriminant Analysis , Color
3.
Sci Rep ; 14(1): 15014, 2024 07 01.
Article in English | MEDLINE | ID: mdl-38951169

ABSTRACT

Plants are valuable resources for drug discovery as they produce diverse bioactive compounds. However, the chemical diversity makes it difficult to predict the biological activity of plant extracts via conventional chemometric methods. In this research, we propose a new computational model that integrates chemical composition data with structure-based chemical ontology. For a model validation, two training datasets were prepared from literature on antibacterial essential oils to classify active/inactive oils. Random forest classifiers constructed from the data showed improved prediction performance in both test datasets. Prior feature selection using hierarchical information criterion further improved the performance. Furthermore, an antibacterial assay using a standard strain of Staphylococcus aureus revealed that the classifier correctly predicted the activity of commercially available oils with an accuracy of 83% (= 10/12). The results of this study indicate that machine learning of chemical composition data integrated with chemical ontology can be a highly efficient approach for exploring bioactive plant extracts.


Subject(s)
Anti-Bacterial Agents , Oils, Volatile , Staphylococcus aureus , Oils, Volatile/chemistry , Oils, Volatile/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Staphylococcus aureus/drug effects , Machine Learning , Microbial Sensitivity Tests , Chemometrics/methods , Plant Extracts/chemistry , Plant Extracts/pharmacology
4.
Sci Rep ; 14(1): 15041, 2024 07 01.
Article in English | MEDLINE | ID: mdl-38951552

ABSTRACT

The Indian economy is greatly influenced by the Banana Industry, necessitating advancements in agricultural farming. Recent research emphasizes the imperative nature of addressing diseases that impact Banana Plants, with a particular focus on early detection to safeguard production. The urgency of early identification is underscored by the fact that diseases predominantly affect banana plant leaves. Automated systems that integrate machine learning and deep learning algorithms have proven to be effective in predicting diseases. This manuscript examines the prediction and detection of diseases in banana leaves, exploring various diseases, machine learning algorithms, and methodologies. The study makes a contribution by proposing two approaches for improved performance and suggesting future research directions. In summary, the objective is to advance understanding and stimulate progress in the prediction and detection of diseases in banana leaves. The need for enhanced disease identification processes is highlighted by the results of the survey. Existing models face a challenge due to their lack of rotation and scale invariance. While algorithms such as random forest and decision trees are less affected, initially convolutional neural networks (CNNs) is considered for disease prediction. Though the Convolutional Neural Network models demonstrated impressive accuracy in many research but it lacks in invariance to scale and rotation. Moreover, it is observed that due its inherent design it cannot be combined with feature extraction methods to identify the banana leaf diseases. Due to this reason two alternative models that combine ANN with scale-invariant Feature transform (SIFT) model or histogram of oriented gradients (HOG) combined with local binary patterns (LBP) model are suggested. The first model ANN with SIFT identify the disease by using the activation functions to process the features extracted by the SIFT by distinguishing the complex patterns. The second integrate the combined features of HOG and LBP to identify the disease thus by representing the local pattern and gradients in an image. This paves a way for the ANN to learn and identify the banana leaf disease. Moving forward, exploring datasets in video formats for disease detection in banana leaves through tailored machine learning algorithms presents a promising avenue for research.


Subject(s)
Machine Learning , Musa , Neural Networks, Computer , Plant Diseases , Plant Leaves , Algorithms
5.
Sci Rep ; 14(1): 15004, 2024 07 01.
Article in English | MEDLINE | ID: mdl-38951567

ABSTRACT

The tumor microenvironment (TME) plays a fundamental role in tumorigenesis, tumor progression, and anti-cancer immunity potential of emerging cancer therapeutics. Understanding inter-patient TME heterogeneity, however, remains a challenge to efficient drug development. This article applies recent advances in machine learning (ML) for survival analysis to a retrospective study of NSCLC patients who received definitive surgical resection and immune pathology following surgery. ML methods are compared for their effectiveness in identifying prognostic subtypes. Six survival models, including Cox regression and five survival machine learning methods, were calibrated and applied to predict survival for NSCLC patients based on PD-L1 expression, CD3 expression, and ten baseline patient characteristics. Prognostic subregions of the biomarker space are delineated for each method using synthetic patient data augmentation and compared between models for overall survival concordance. A total of 423 NSCLC patients (46% female; median age [inter quantile range]: 67 [60-73]) treated with definite surgical resection were included in the study. And 219 (52%) patients experienced events during the observation period consisting of a maximum follow-up of 10 years and median follow up 78 months. The random survival forest (RSF) achieved the highest predictive accuracy, with a C-index of 0.84. The resultant biomarker subtypes demonstrate that patients with high PD-L1 expression combined with low CD3 counts experience higher risk of death within five-years of surgical resection.


Subject(s)
Biomarkers, Tumor , Carcinoma, Non-Small-Cell Lung , Lung Neoplasms , Machine Learning , Tumor Microenvironment , Humans , Carcinoma, Non-Small-Cell Lung/pathology , Carcinoma, Non-Small-Cell Lung/mortality , Carcinoma, Non-Small-Cell Lung/surgery , Female , Male , Aged , Middle Aged , Lung Neoplasms/pathology , Lung Neoplasms/mortality , Lung Neoplasms/surgery , Prognosis , Retrospective Studies , Biomarkers, Tumor/metabolism , B7-H1 Antigen/metabolism , Survival Analysis
6.
Commun Biol ; 7(1): 774, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38951581

ABSTRACT

Machine learning (ML) newly enables tests for higher inter-species diversity in visible phenotype (disparity) among males versus females, predictions made from Darwinian sexual selection versus Wallacean natural selection, respectively. Here, we use ML to quantify variation across a sample of > 16,000 dorsal and ventral photographs of the sexually dimorphic birdwing butterflies (Lepidoptera: Papilionidae). Validation of image embedding distances, learnt by a triplet-trained, deep convolutional neural network, shows ML can be used for automated reconstruction of phenotypic evolution achieving measures of phylogenetic congruence to genetic species trees within a range sampled among genetic trees themselves. Quantification of sexual disparity difference (male versus female embedding distance), shows sexually and phylogenetically variable inter-species disparity. Ornithoptera exemplify high embedded male image disparity, diversification of selective optima in fitted multi-peak OU models and accelerated divergence, with cases of extreme divergence in allopatry and sympatry. However, genus Troides shows inverted patterns, including comparatively static male embedded phenotype, and higher female than male disparity - though within an inferred selective regime common to these females. Birdwing shapes and colour patterns that are most phenotypically distinctive in ML similarity are generally those of males. However, either sex can contribute majoritively to observed phenotypic diversity among species.


Subject(s)
Butterflies , Animals , Female , Butterflies/genetics , Butterflies/physiology , Butterflies/anatomy & histology , Male , Phenotype , Phylogeny , Sex Characteristics , Biological Evolution , Machine Learning , Wings, Animal/anatomy & histology , Wings, Animal/physiology
7.
Sci Rep ; 14(1): 15009, 2024 07 01.
Article in English | MEDLINE | ID: mdl-38951638

ABSTRACT

Ulcerative colitis (UC) is a chronic inflammatory bowel disease with intricate pathogenesis and varied presentation. Accurate diagnostic tools are imperative to detect and manage UC. This study sought to construct a robust diagnostic model using gene expression profiles and to identify key genes that differentiate UC patients from healthy controls. Gene expression profiles from eight cohorts, encompassing a total of 335 UC patients and 129 healthy controls, were analyzed. A total of 7530 gene sets were computed using the GSEA method. Subsequent batch correction, PCA plots, and intersection analysis identified crucial pathways and genes. Machine learning, incorporating 101 algorithm combinations, was employed to develop diagnostic models. Verification was done using four external cohorts, adding depth to the sample repertoire. Evaluation of immune cell infiltration was undertaken through single-sample GSEA. All statistical analyses were conducted using R (Version: 4.2.2), with significance set at a P value below 0.05. Employing the GSEA method, 7530 gene sets were computed. From this, 19 intersecting pathways were discerned to be consistently upregulated across all cohorts, which pertained to cell adhesion, development, metabolism, immune response, and protein regulation. This corresponded to 83 unique genes. Machine learning insights culminated in the LASSO regression model, which outperformed others with an average AUC of 0.942. This model's efficacy was further ratified across four external cohorts, with AUC values ranging from 0.694 to 0.873 and significant Kappa statistics indicating its predictive accuracy. The LASSO logistic regression model highlighted 13 genes, with LCN2, ASS1, and IRAK3 emerging as pivotal. Notably, LCN2 showcased significantly heightened expression in active UC patients compared to both non-active patients and healthy controls (P < 0.05). Investigations into the correlation between these genes and immune cell infiltration in UC highlighted activated dendritic cells, with statistically significant positive correlations noted for LCN2 and IRAK3 across multiple datasets. Through comprehensive gene expression analysis and machine learning, a potent LASSO-based diagnostic model for UC was developed. Genes such as LCN2, ASS1, and IRAK3 hold potential as both diagnostic markers and therapeutic targets, offering a promising direction for future UC research and clinical application.


Subject(s)
Colitis, Ulcerative , Machine Learning , Humans , Colitis, Ulcerative/genetics , Colitis, Ulcerative/diagnosis , Algorithms , Gene Expression Profiling/methods , Transcriptome , Interleukin-1 Receptor-Associated Kinases/genetics , Male , Female , Lipocalin-2/genetics , Case-Control Studies , Biomarkers , Adult
8.
J Transl Med ; 22(1): 607, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38951896

ABSTRACT

Clear cell renal cell carcinoma (ccRCC) is a prevalent malignancy with complex heterogeneity within epithelial cells, which plays a crucial role in tumor progression and immune regulation. Yet, the clinical importance of the malignant epithelial cell-related genes (MECRGs) in ccRCC remains insufficiently understood. This research aims to undertake a comprehensive investigation into the functions and clinical relevance of malignant epithelial cell-related genes in ccRCC, providing valuable understanding of the molecular mechanisms and offering potential targets for treatment strategies. Using data from single-cell sequencing, we successfully identified 219 MECRGs and established a prognostic model MECRGS (MECRGs' signature) by synergistically analyzing 101 machine-learning models using 10 different algorithms. Remarkably, the MECRGS demonstrated superior predictive performance compared to traditional clinical features and 92 previously published signatures across six cohorts, showcasing its independence and accuracy. Upon stratifying patients into high- and low-MECRGS subgroups using the specified cut-off threshold, we noted that patients with elevated MECRGS scores displayed characteristics of an immune suppressive tumor microenvironment (TME) and showed worse outcomes after immunotherapy. Additionally, we discovered a distinct ccRCC tumor cell subtype characterized by the high expressions of PLOD2 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 2) and SAA1 (Serum Amyloid A1), which we further validated in the Renji tissue microarray (TMA) cohort. Lastly, 'Cellchat' revealed potential crosstalk patterns between these cells and other cell types, indicating their potential role in recruiting CD163 + macrophages and regulatory T cells (Tregs), thereby establishing an immunosuppressive TME. PLOD2 + SAA1 + cancer cells with intricate crosstalk patterns indeed show promise for potential therapeutic interventions.


Subject(s)
Carcinoma, Renal Cell , Epithelial Cells , Gene Expression Regulation, Neoplastic , Kidney Neoplasms , Tumor Microenvironment , Humans , Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/pathology , Tumor Microenvironment/genetics , Kidney Neoplasms/genetics , Kidney Neoplasms/pathology , Prognosis , Epithelial Cells/metabolism , Epithelial Cells/pathology , Female , Male , Gene Expression Profiling , Machine Learning
9.
BMJ Health Care Inform ; 31(1)2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38955390

ABSTRACT

BACKGROUND: The detrimental repercussions of the COVID-19 pandemic on the quality of care and clinical outcomes for patients with acute coronary syndrome (ACS) necessitate a rigorous re-evaluation of prognostic prediction models in the context of the pandemic environment. This study aimed to elucidate the adaptability of prediction models for 30-day mortality in patients with ACS during the pandemic periods. METHODS: A total of 2041 consecutive patients with ACS were included from 32 institutions between December 2020 and April 2023. The dataset comprised patients who were admitted for ACS and underwent coronary angiography for the diagnosis during hospitalisation. The prediction accuracy of the Global Registry of Acute Coronary Events (GRACE) and a machine learning model, KOTOMI, was evaluated for 30-day mortality in patients with ST-elevation acute myocardial infarction (STEMI) and non-ST-elevation acute coronary syndrome (NSTE-ACS). RESULTS: The area under the receiver operating characteristics curve (AUROC) was 0.85 (95% CI 0.81 to 0.89) in the GRACE and 0.87 (95% CI 0.82 to 0.91) in the KOTOMI for STEMI. The difference of 0.020 (95% CI -0.098-0.13) was not significant. For NSTE-ACS, the respective AUROCs were 0.82 (95% CI 0.73 to 0.91) in the GRACE and 0.83 (95% CI 0.74 to 0.91) in the KOTOMI, also demonstrating insignificant difference of 0.010 (95% CI -0.023 to 0.25). The prediction accuracy of both models had consistency in patients with STEMI and insignificant variation in patients with NSTE-ACS between the pandemic periods. CONCLUSIONS: The prediction models maintained high accuracy for 30-day mortality of patients with ACS even in the pandemic periods, despite marginal variation observed.


Subject(s)
Acute Coronary Syndrome , COVID-19 , Humans , Acute Coronary Syndrome/mortality , COVID-19/epidemiology , COVID-19/mortality , Female , Male , Prognosis , Aged , Middle Aged , Machine Learning , SARS-CoV-2 , ST Elevation Myocardial Infarction/mortality , Coronary Angiography , ROC Curve , Registries , Pandemics
10.
Front Endocrinol (Lausanne) ; 15: 1381822, 2024.
Article in English | MEDLINE | ID: mdl-38957447

ABSTRACT

Objective: This study aimed to construct a machine learning model using clinical variables and ultrasound radiomics features for the prediction of the benign or malignant nature of pancreatic tumors. Methods: 242 pancreatic tumor patients who were hospitalized at the First Affiliated Hospital of Guangxi Medical University between January 2020 and June 2023 were included in this retrospective study. The patients were randomly divided into a training cohort (n=169) and a test cohort (n=73). We collected 28 clinical features from the patients. Concurrently, 306 radiomics features were extracted from the ultrasound images of the patients' tumors. Initially, a clinical model was constructed using the logistic regression algorithm. Subsequently, radiomics models were built using SVM, random forest, XGBoost, and KNN algorithms. Finally, we combined clinical features with a new feature RAD prob calculated by applying radiomics model to construct a fusion model, and developed a nomogram based on the fusion model. Results: The performance of the fusion model surpassed that of both the clinical and radiomics models. In the training cohort, the fusion model achieved an AUC of 0.978 (95% CI: 0.96-0.99) during 5-fold cross-validation and an AUC of 0.925 (95% CI: 0.86-0.98) in the test cohort. Calibration curve and decision curve analyses demonstrated that the nomogram constructed from the fusion model has high accuracy and clinical utility. Conclusion: The fusion model containing clinical and ultrasound radiomics features showed excellent performance in predicting the benign or malignant nature of pancreatic tumors.


Subject(s)
Machine Learning , Pancreatic Neoplasms , Ultrasonography , Humans , Pancreatic Neoplasms/diagnostic imaging , Pancreatic Neoplasms/pathology , Female , Male , Retrospective Studies , Ultrasonography/methods , Middle Aged , Aged , Adult , Nomograms , Radiomics
11.
Annu Rev Biomed Eng ; 26(1): 331-355, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38959390

ABSTRACT

Recent advancements in soft electronic skin (e-skin) have led to the development of human-like devices that reproduce the skin's functions and physical attributes. These devices are being explored for applications in robotic prostheses as well as for collecting biopotentials for disease diagnosis and treatment, as exemplified by biomedical e-skins. More recently, machine learning (ML) has been utilized to enhance device control accuracy and data processing efficiency. The convergence of e-skin technologies with ML is promoting their translation into clinical practice, especially in healthcare. This review highlights the latest developments in ML-reinforced e-skin devices for robotic prostheses and biomedical instrumentations. We first describe technological breakthroughs in state-of-the-art e-skin devices, emphasizing technologies that achieve skin-like properties. We then introduce ML methods adopted for control optimization and pattern recognition, followed by practical applications that converge the two technologies. Lastly, we briefly discuss the challenges this interdisciplinary research encounters in its clinical and industrial transition.


Subject(s)
Machine Learning , Robotics , Wearable Electronic Devices , Humans , Robotics/methods , Skin , Equipment Design , Biomedical Engineering/methods
12.
Brief Bioinform ; 25(4)2024 May 23.
Article in English | MEDLINE | ID: mdl-38960405

ABSTRACT

Plasmids are extrachromosomal DNA found in microorganisms. They often carry beneficial genes that help bacteria adapt to harsh conditions. Plasmids are also important tools in genetic engineering, gene therapy, and drug production. However, it can be difficult to identify plasmid sequences from chromosomal sequences in genomic and metagenomic data. Here, we have developed a new tool called PlasmidHunter, which uses machine learning to predict plasmid sequences based on gene content profile. PlasmidHunter can achieve high accuracies (up to 97.6%) and high speeds in benchmark tests including both simulated contigs and real metagenomic plasmidome data, outperforming other existing tools.


Subject(s)
Machine Learning , Plasmids , Plasmids/genetics , Sequence Analysis, DNA/methods , Software , Computational Biology/methods , Algorithms
13.
Gynecol Endocrinol ; 40(1): 2365913, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38946245

ABSTRACT

Background: Normal reproductive function requires adequate regulation of follicle stimulating hormone (FSH) and luteinizing hormone (LH) secretion. During ovarian stimulation for in-vitro fertilization (IVF), some patients will demonstrate an early rise in LH despite being treated with a gonadotropin releasing-hormone (GnRH) antagonist, sometimes necessitating cycle cancellation. Previous studies have demonstrated a possible link between a premature LH rise with ovarian response to gonadotropins. We sought to determine what clinical parameters can predict this premature LH rise and their relative contribution. Methods: A retrospective study of 382 patients who underwent IVF treatment at Rambam Medical Center. The patients were stratified into age groups. A model predicting premature LH rise based on clinical and demographic parameters was developed using both multiple linear regression and a machine-learning-based algorithm. Results: LH rise was defined as the difference between pre-trigger and basal LH levels. The clinical parameters that significantly predicted an LH rise were patient age, BMI, LH levels at stimulation outset, LH levels on day of antagonist administration, and total number of stimulation days. Importantly, when analyzing the data of specific age groups, the model's prediction was strongest in young patients (age 25-30 years, R2 = 0.88, p < .001) and weakest in older patients (age > 41 years, R2 = 0.23, p = .003). Conclusions: Using both multiple linear regression and a machine-learning-based algorithm of patient data from IVF cycles, we were able to predict patients at risk for premature LH rise and/or LH surge. Utilizing this model may help prevent IVF cycle cancellation and better timing of ovulation triggering.


Subject(s)
Fertilization in Vitro , Luteinizing Hormone , Ovulation Induction , Humans , Female , Ovulation Induction/methods , Fertilization in Vitro/methods , Adult , Luteinizing Hormone/blood , Retrospective Studies , Gonadotropin-Releasing Hormone/antagonists & inhibitors , Machine Learning , Age Factors
14.
J Pak Med Assoc ; 74(6): 1194-1196, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38949002

ABSTRACT

Liquid biopsy has multiple benefits and is used extensively in other fields of oncology, but its role in neuro-oncology has been limited so far. Multiple tumour-derived materials like circulating tumour cells (CTCs), tumour-educated platelets (TEPs), cell-free DNA (cfDNA), circulating tumour DNA (ctDNA), and miRNA are studied in CSF, blood (plasma, serum) or urine. Large and complex amounts of data from liquid biopsy can be simplified by machine learning using various algorithms. By using this technique, we can diagnose brain tumours and differentiate low versus highgrade glioma and true progression from pseudo-progression. The potential of liquid biopsy in brain tumours has not been extensively studied, but it has a bright future in the coming years. Here, we present a literature review on the role of machine learning in liquid biopsy of brain tumours.


Subject(s)
Brain Neoplasms , Machine Learning , Neoplastic Cells, Circulating , Humans , Liquid Biopsy/methods , Brain Neoplasms/diagnosis , Brain Neoplasms/pathology , Neoplastic Cells, Circulating/pathology , Circulating Tumor DNA/blood , Glioma/pathology , Glioma/diagnosis , Biomarkers, Tumor/blood , MicroRNAs/blood
16.
PLoS One ; 19(7): e0304413, 2024.
Article in English | MEDLINE | ID: mdl-38954679

ABSTRACT

BACKGROUND: Sedatives are commonly used to promote sleep in intensive care unit patients. However, it is not clear whether sedation-induced states are similar to the biological sleep. We explored if sedative-induced states resemble biological sleep using multichannel electroencephalogram (EEG) recordings. METHODS: Multichannel EEG datasets from two different sources were used in this study: (1) sedation dataset consisting of 102 healthy volunteers receiving propofol (N = 36), sevoflurane (N = 36), or dexmedetomidine (N = 30), and (2) publicly available sleep EEG dataset (N = 994). Forty-four quantitative time, frequency and entropy features were extracted from EEG recordings and were used to train the machine learning algorithms on sleep dataset to predict sleep stages in the sedation dataset. The predicted sleep states were then compared with the Modified Observer's Assessment of Alertness/ Sedation (MOAA/S) scores. RESULTS: The performance of the model was poor (AUC = 0.55-0.58) in differentiating sleep stages during propofol and sevoflurane sedation. In the case of dexmedetomidine, the AUC of the model increased in a sedation-dependent manner with NREM stages 2 and 3 highly correlating with deep sedation state reaching an AUC of 0.80. CONCLUSIONS: We addressed an important clinical question to identify biological sleep promoting sedatives using EEG signals. We demonstrate that propofol and sevoflurane do not promote EEG patterns resembling natural sleep while dexmedetomidine promotes states resembling NREM stages 2 and 3 sleep, based on current sleep staging standards.


Subject(s)
Dexmedetomidine , Electroencephalography , Hypnotics and Sedatives , Machine Learning , Propofol , Sevoflurane , Sleep , Humans , Hypnotics and Sedatives/pharmacology , Hypnotics and Sedatives/administration & dosage , Male , Adult , Female , Sleep/drug effects , Sleep/physiology , Propofol/pharmacology , Propofol/administration & dosage , Sevoflurane/pharmacology , Sevoflurane/adverse effects , Sevoflurane/administration & dosage , Dexmedetomidine/pharmacology , Sleep Stages/drug effects , Young Adult
17.
PLoS One ; 19(7): e0306359, 2024.
Article in English | MEDLINE | ID: mdl-38954735

ABSTRACT

IMPORTANCE: Sleep is critical to a person's physical and mental health and there is a need to create high performing machine learning models and critically understand how models rank covariates. OBJECTIVE: The study aimed to compare how different model metrics rank the importance of various covariates. DESIGN, SETTING, AND PARTICIPANTS: A cross-sectional cohort study was conducted retrospectively using the National Health and Nutrition Examination Survey (NHANES), which is publicly available. METHODS: This study employed univariate logistic models to filter out strong, independent covariates associated with sleep disorder outcome, which were then used in machine-learning models, of which, the most optimal was chosen. The machine-learning model was used to rank model covariates based on gain, cover, and frequency to identify risk factors for sleep disorder and feature importance was evaluated using both univariable and multivariable t-statistics. A correlation matrix was created to determine the similarity of the importance of variables ranked by different model metrics. RESULTS: The XGBoost model had the highest mean AUROC of 0.865 (SD = 0.010) with Accuracy of 0.762 (SD = 0.019), F1 of 0.875 (SD = 0.766), Sensitivity of 0.768 (SD = 0.023), Specificity of 0.782 (SD = 0.025), Positive Predictive Value of 0.806 (SD = 0.025), and Negative Predictive Value of 0.737 (SD = 0.034). The model metrics from the machine learning of gain and cover were strongly positively correlated with one another (r > 0.70). Model metrics from the multivariable model and univariable model were weakly negatively correlated with machine learning model metrics (R between -0.3 and 0). CONCLUSION: The ranking of important variables associated with sleep disorder in this cohort from the machine learning models were not related to those from regression models.


Subject(s)
Machine Learning , Sleep Initiation and Maintenance Disorders , Humans , Sleep Initiation and Maintenance Disorders/epidemiology , Male , Female , Middle Aged , Cross-Sectional Studies , Adult , Retrospective Studies , Risk Factors , Nutrition Surveys , Logistic Models , Aged , Models, Statistical
18.
Sci Rep ; 14(1): 15052, 2024 07 01.
Article in English | MEDLINE | ID: mdl-38956137

ABSTRACT

Breast cancer is the most commonly diagnosed cancer among women worldwide. Breast cancer patients experience significant distress relating to their diagnosis and treatment. Managing this distress is critical for improving the lifespan and quality of life of breast cancer survivors. This study aimed to assess the level of distress in breast cancer survivors and analyze the variables that significantly affect distress using machine learning techniques. A survey was conducted with 641 adult breast cancer patients using the National Comprehensive Cancer Network Distress Thermometer tool. Participants identified various factors that caused distress. Five machine learning models were used to predict the classification of patients into mild and severe distress groups. The survey results indicated that 57.7% of the participants experienced severe distress. The top-three best-performing models indicated that depression, dealing with a partner, housing, work/school, and fatigue are the primary indicators. Among the emotional problems, depression, fear, worry, loss of interest in regular activities, and nervousness were determined as significant predictive factors. Therefore, machine learning models can be effectively applied to determine various factors influencing distress in breast cancer patients who have completed primary treatment, thereby identifying breast cancer patients who are vulnerable to distress in clinical settings.


Subject(s)
Breast Neoplasms , Cancer Survivors , Machine Learning , Psychological Distress , Humans , Breast Neoplasms/psychology , Female , Cancer Survivors/psychology , Middle Aged , Adult , Quality of Life , Stress, Psychological/psychology , Aged , Depression/psychology , Surveys and Questionnaires
19.
Sci Rep ; 14(1): 15087, 2024 07 02.
Article in English | MEDLINE | ID: mdl-38956261

ABSTRACT

The Electrocardiogram (ECG) records are crucial for predicting heart diseases and evaluating patient's health conditions. ECG signals provide essential peak values that reflect reliable health information. Analyzing ECG signals is a fundamental technique for computerized prediction with advancements in Very Large-Scale Integration (VLSI) technology and significantly impacts in biomedical signal processing. VLSI advancements focus on high-speed circuit functionality while minimizing power consumption and area occupancy. In ECG signal denoising, digital filters like Infinite Impulse Response (IIR) and Finite Impulse Response (FIR) are commonly used. The FIR filters are preferred for their higher-order performance and stability over IIR filters, especially in real-time applications. The Modified FIR (MFIR) blocks were reconstructed using the optimized adder-multiplier block for better noise reduction performance. The MIT-BIT database is used as reference where the noises are filtered by the MFIR based on Optimized Kogge Stone Adder (OKSA). Features are extracted and analyzed using Discrete wavelet transform (DWT) and Cross Correlation (CC). At this modern era, Hybrid methods of Machine Learning (HMLM) methods are preferred because of their combined performance which is better than non-fused methods. The accuracy of the Hybrid Neural Network (HNN) model reached 92.3%, surpassing other models such as Generalized Sequential Neural Networks (GSNN), Artificial Neural Networks (ANN), Support Vector Machine with linear kernel (SVM linear), and Support Vector Machine with Radial Basis Function kernel (SVM RBF) by margins of 3.3%, 5.3%, 23.3%, and 24.3%, respectively. While the precision of the HNN is 91.1%, it was slightly lower than GSNN and ANN but higher than both SVM linear and SVM -RBF. The HNN with various features are incorporated to improve the ECG classification. The accuracy of the HNN is switched to 95.99% when the DWT and CC are combined. Also, it improvises other parameters such as precision 93.88%, recall is 0.94, F1 score is 0.88, Kappa is 0.89, kurtosis is 1.54, skewness is 1.52 and error rate 0.076. These parameters are higher than recently developed models whose algorithms and methods accuracy is more than 90%.


Subject(s)
Electrocardiography , Neural Networks, Computer , Signal Processing, Computer-Assisted , Electrocardiography/methods , Humans , Algorithms , Wavelet Analysis , Machine Learning
20.
Sci Rep ; 14(1): 15154, 2024 07 02.
Article in English | MEDLINE | ID: mdl-38956297

ABSTRACT

Historically, the analysis of stimulus-dependent time-frequency patterns has been the cornerstone of most electroencephalography (EEG) studies. The abnormal oscillations in high-frequency waves associated with psychotic disorders during sensory and cognitive tasks have been studied many times. However, any significant dissimilarity in the resting-state low-frequency bands is yet to be established. Spectral analysis of the alpha and delta band waves shows the effectiveness of stimulus-independent EEG in identifying the abnormal activity patterns of pathological brains. A generalized model incorporating multiple frequency bands should be more efficient in associating potential EEG biomarkers with first-episode psychosis (FEP), leading to an accurate diagnosis. We explore multiple machine-learning methods, including random-forest, support vector machine, and Gaussian process classifier (GPC), to demonstrate the practicality of resting-state power spectral density (PSD) to distinguish patients of FEP from healthy controls. A comprehensive discussion of our preprocessing methods for PSD analysis and a detailed comparison of different models are included in this paper. The GPC model outperforms the other models with a specificity of 95.78% to show that PSD can be used as an effective feature extraction technique for analyzing and classifying resting-state EEG signals of psychiatric disorders.


Subject(s)
Electroencephalography , Psychotic Disorders , Support Vector Machine , Humans , Psychotic Disorders/physiopathology , Psychotic Disorders/diagnosis , Electroencephalography/methods , Female , Male , Adult , Young Adult , Rest/physiology , Machine Learning , Brain/physiopathology , Adolescent , Signal Processing, Computer-Assisted
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