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1.
BMC Genomics ; 25(1): 563, 2024 Jun 05.
Article in English | MEDLINE | ID: mdl-38840042

ABSTRACT

BACKGROUND: Broussonetia papyrifera is an economically significant tree with high utilization value, yet its cultivation is often constrained by soil contamination with heavy metals (HMs). Effective scientific cultivation management, which enhances the yield and quality of B. papyrifera, necessitates an understanding of its regulatory mechanisms in response to HM stress. RESULTS: Twelve Metallothionein (MT) genes were identified in B. papyrifera. Their open reading frames ranged from 186 to 372 bp, encoding proteins of 61 to 123 amino acids with molecular weights between 15,473.77 and 29,546.96 Da, and theoretical isoelectric points from 5.24 to 5.32. Phylogenetic analysis classified these BpMTs into three subclasses: MT1, MT2, and MT3, with MT2 containing seven members and MT3 only one. The expression of most BpMT genes was inducible by Cd, Mn, Cu, Zn, and abscisic acid (ABA) treatments, particularly BpMT2e, BpMT2d, BpMT2c, and BpMT1c, which showed significant responses and warrant further study. Yeast cells expressing these BpMT genes exhibited enhanced tolerance to Cd, Mn, Cu, and Zn stresses compared to control cells. Yeasts harboring BpMT1c, BpMT2e, and BpMT2d demonstrated higher accumulation of Cd, Cu, Mn, and Zn, suggesting a chelation and binding capacity of BpMTs towards HMs. Site-directed mutagenesis of cysteine (Cys) residues indicated that mutations in the C domain of type 1 BpMT led to increased sensitivity to HMs and reduced HM accumulation in yeast cells; While in type 2 BpMTs, the contribution of N and C domain to HMs' chelation possibly corelated to the quantity of Cys residues. CONCLUSION: The BpMT genes are crucial in responding to diverse HM stresses and are involved in ABA signaling. The Cys-rich domains of BpMTs are pivotal for HM tolerance and chelation. This study offers new insights into the structure-function relationships and metal-binding capabilities of type-1 and - 2 plant MTs, enhancing our understanding of their roles in plant adaptation to HM stresses.


Subject(s)
Broussonetia , Metallothionein , Metals, Heavy , Phylogeny , Metallothionein/genetics , Metallothionein/metabolism , Metallothionein/chemistry , Metals, Heavy/metabolism , Broussonetia/genetics , Broussonetia/metabolism , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Proteins/chemistry , Stress, Physiological , Amino Acid Sequence , Protein Binding
2.
Sci Rep ; 14(1): 10684, 2024 05 09.
Article in English | MEDLINE | ID: mdl-38724636

ABSTRACT

Pollution by heavy metals (HMs) has become a global problem for agriculture and the environment. In this study, the effects of pristine biochar and biochar modified with manganese dioxide (BC@MnO2) and zinc oxide (BC@ZnO) nanoparticles on the immobilization and bioavailability of Pb, Cd, Zn, and Ni in soil under ryegrass (Lolium perenne L.) cultivation were investigated. The results of SEM-EDX, FTIR, and XRD showed that ZnO and MnO2 nanoparticles were successfully loaded onto biochar. The results showed that BC, BC@MnO2 and BC@ZnO treatments significantly increased shoots and roots dry weight of ryegrass compared to the control. The maximum dry weight of root and shoot (1.365 g pot-1 and 4.163 g pot-1, respectively) was reached at 1% BC@MnO2. The HMs uptake by ryegrass roots and shoots decreased significantly after addition of amendments. The lowest Pb, Cd, Zn and Ni uptake in the plant shoot (13.176, 24.92, 32.407, and 53.88 µg pot-1, respectively) was obtained in the 1% BC@MnO2 treatment. Modified biochar was more successful in reducing HMs uptake by ryegrass and improving plant growth than pristine biochar and can therefore be used as an efficient and cost effective amendment for the remediation of HMs contaminated soils. The lowest HMs translocation (TF) and bioconcentration factors were related to the 1% BC@MnO2 treatment. Therefore, BC@MnO2 was the most successful treatment for HMs immobilization in soil. Also, a comparison of the TF values of plant showed that ryegrass had a good ability to accumulate all studied HMs in its roots, and it is a suitable plant for HMs phytostabilization.


Subject(s)
Charcoal , Lolium , Manganese Compounds , Metals, Heavy , Oxides , Soil Pollutants , Zinc Oxide , Lolium/metabolism , Lolium/growth & development , Charcoal/chemistry , Soil Pollutants/metabolism , Oxides/chemistry , Metals, Heavy/metabolism , Zinc Oxide/chemistry , Manganese Compounds/chemistry , Manganese Compounds/metabolism , Plant Roots/metabolism , Plant Roots/growth & development , Nanoparticles/chemistry , Biological Availability , Soil/chemistry
3.
BMC Plant Biol ; 24(1): 357, 2024 May 03.
Article in English | MEDLINE | ID: mdl-38698319

ABSTRACT

BACKGROUND: Among different adsorbents, natural and inorganic compounds such as diatomite are important and advantageous in terms of high efficiency and cost-effectiveness, and function in stabilizing heavy metals in the environment. Calendula officinalis, a plant known as a high accumulator of heavy metals, was cultivated in soil treated with varying concentrations of modified diatomite to demonstrate the efficiency of modified diatomite in stabilizating of heavy metals in soils, RESULTS: The modification of diatomite aimed to enhance Calendula officinalis adsorptive properties, particularly towards heavy metals such as lead (Pb), Zinc (Zn), Chromium (Cr), Nickle (Ni), and Copper (Cu), common contaminants in industrial soils. The experimental design included both control and treated soil samples, with assessments at regular intervals. Modified diatomite significantly decreased the bioaccumulation of heavy metals in contaminated soils except Zn, evidenced by decreased DTPA extractable heavy metals in soil and also heavy metal concentrations in plant tissues. Using 10% modified diatomite decreased 91% Pb and Cu, 78% Cr, and 79% Ni concentration of plants compared to the control treatment. The highest concentration of Zn in plant tissue was observed in 2.5% modified diatomite treatment. Remarkably, the application of modified diatomite also appeared to improve the nutrient profile of the soil, leading to enhanced uptake of key nutrients like phosphorus (P) 1.18%, and potassium (K) 79.6% in shoots and 82.3% in roots in Calendula officinalis. Consequently, treated plants exhibited improved growth characteristics, including shoots and roots height of 16.98% and 12.8% respectively, and shoots fresh and dry weight of 48.5% and 50.2% respectively., compared to those in untreated, contaminated soil. CONCLUSION: The findings suggest promising implications for using such amendments in ecological restoration and sustainable agriculture, particularly in areas impacted by industrial pollution.


Subject(s)
Calendula , Diatomaceous Earth , Metals, Heavy , Soil Pollutants , Metals, Heavy/metabolism , Soil Pollutants/metabolism , Diatomaceous Earth/metabolism , Calendula/metabolism , Calendula/chemistry , Soil/chemistry , Biodegradation, Environmental , Environmental Restoration and Remediation/methods
4.
World J Microbiol Biotechnol ; 40(7): 202, 2024 May 14.
Article in English | MEDLINE | ID: mdl-38743315

ABSTRACT

Currently, heavy metal-resistant (HMR) marine actinomycetes have attracted much attention worldwide due to their unique capabilities. In this study, 27 marine-derived actinomycetes were isolated from coastal beaches in the Arabian Gulf of Al-Jubail in Saudi Arabia and screened for resistance to 100 mg/L of the heavy metals Cd2+, Cr6+, Cu2+, Fe2+, Pb2+, and Ni2+ using different assay techniques. Six isolates were selected as HMRs, of which two isolates, JJB5 and JJB11, exhibited the highest maximum tolerance concentrations (200- > 300 mg/L). Both isolates were the highest among six-HMR screened for their biodegradation potential of plastics low-density polyethylene, polystyrene, and polyvinyl chloride, recording the highest weight loss (15 ± 1.22 - 65 ± 1.2%) in their thin films. They also showed the highest biodegradability of the pesticides acetamiprid, chlordane, hexachlorocyclohexane, indoxacarb and lindane, indicating promising removal capacities (95.70-100%) for acetamiprid and indoxacarb using HPLC analysis. Additionally, the cell-free filtrate (CFF) of both isolates displayed the highest antimicrobial activity among the six-HMR screened against a variety of microbial test strains, recording the highest inhibition zone diameters (13.76 ± 0.66 - 26.0 ± 1.13 mm). GC‒MS analyses of the ethyl acetate extract of their CFFs revealed the presence of diverse chemical compounds with a multitude of remarkable biological activities. Based on their spore morphology and wall-chemotype, they were assigned to the nocardioform-actinomycetes. Furthermore, their phenotypic characteristics, together with 16S rRNA gene sequencing (OR121525-OR121526), revealed them as Nocardia harenae JJB5 and Amycolatopsis marina JJB11. Our results suggest that marine HMR actinomycetes are promising candidates for various biotechnological applications.


Subject(s)
Biodegradation, Environmental , Metals, Heavy , Microbial Sensitivity Tests , Nocardia , RNA, Ribosomal, 16S , Metals, Heavy/metabolism , RNA, Ribosomal, 16S/genetics , Nocardia/isolation & purification , Nocardia/genetics , Nocardia/metabolism , Saudi Arabia , Anti-Bacterial Agents/pharmacology , Phylogeny , Actinobacteria/metabolism , Actinobacteria/isolation & purification , Actinobacteria/genetics , Actinobacteria/classification , Water Pollutants, Chemical/metabolism , Seawater/microbiology , Pesticides/metabolism , Drug Resistance, Bacterial
5.
Sci Total Environ ; 932: 173029, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38719039

ABSTRACT

Plant growth regulators (PGR) and plant growth-promoting bacteria (PGPB) have the potential in phytoremediation of heavy metals (HMs) contaminated soils. However, their sole application may not yield the optimal results, thus necessitating the combined application. The present study aimed to enhance the phytoremediation efficiency of Sedum alfredii Hance (S. alfredii) in acidic and alkaline soils through the combination of PGR (Brassinolide, BR) and PGPB (Pseudomonas fluorescens, P. fluorescens). The combination of BR and P. fluorescens (BRB treatment) effectively increased the removal efficiency of S. alfredii for Cd, Pb, and Zn by 355.2 and 155.3 %, 470.1 and 128.9 %, and 408.4 and 209.6 %, in acidic and alkaline soils, respectively. Moreover, BRB treatment led to a substantial increase in photosynthetic pigments contents and antioxidant enzymes activities, resulting in a remarkable increase in biomass (86.71 and 47.22 %) and dry mass (101.49 and 42.29 %) of plants grown in acidic and alkaline soils, respectively. Similarly, BRB treatment significantly elevated the Cd (109.4 and 71.36 %), Pb (174.9 and 48.03 %), and Zn levels (142.8 and 104.3 %) in S. alfredii shoots, along with cumulative accumulation of Cd (122.7 and 79.47 %), Pb (183.8 and 60.49 %), and Zn (150.7 and 117.9 %), respectively. In addition, the BRB treatment lowered the soil pH and DTPA-HMs contents, while augmenting soil enzymatic activities, thereby contributing soil microecology and facilitating the HMs absorption and translocation by S. alfredii to over-ground tissues. Furthermore, the evaluation of microbial community structure in phyllosphere and rhizosphere after remediation revealed the shift in microbial abundance. The combined treatment altered the principal effects on S. alfredii HMs accumulation from bacterial diversity to the soil HMs availability. In summary, our findings demonstrated that synergistic application of BR and P. fluorescens represents a viable approach to strengthen the phytoextraction efficacy of S. alfredii in varying soils.


Subject(s)
Biodegradation, Environmental , Metals, Heavy , Plant Growth Regulators , Pseudomonas fluorescens , Sedum , Soil Pollutants , Soil , Sedum/metabolism , Soil Pollutants/metabolism , Metals, Heavy/metabolism , Plant Growth Regulators/metabolism , Soil/chemistry , Pseudomonas fluorescens/metabolism , Soil Microbiology
6.
Food Chem ; 452: 139557, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-38728895

ABSTRACT

ß-Galactosidase (ß-gal), an enzyme related to cell wall degradation, plays an important role in regulating cell wall metabolism and reconstruction. However, activatable fluorescence probes for the detection and imaging of ß-gal fluctuations in plants have been less exploited. Herein, we report an activatable fluorescent probe based on intramolecular charge transfer (ICT), benzothiazole coumarin-bearing ß-galactoside (BC-ßgal), to achieve distinct in situ imaging of ß-gal in plant cells. It exhibits high sensitivity and selectivity to ß-gal with a fast response (8 min). BC-ßgal can be used to efficiently detect the alternations of intracellular ß-gal levels in cabbage root cells with considerable imaging integrity and imaging contrast. Significantly, BC-ßgal can assess ß-gal activity in cabbage roots under heavy metal stress (Cd2+, Cu2+, and Pb2+), revealing that ß-gal activity is negatively correlated with the severity of heavy metal stress. Our work thus facilitates the study of ß-gal biological mechanisms.


Subject(s)
Brassica , Fluorescent Dyes , Metals, Heavy , Plant Roots , beta-Galactosidase , beta-Galactosidase/metabolism , beta-Galactosidase/chemistry , Brassica/chemistry , Brassica/metabolism , Brassica/enzymology , Plant Roots/chemistry , Plant Roots/metabolism , Fluorescent Dyes/chemistry , Metals, Heavy/metabolism , Metals, Heavy/analysis , Optical Imaging , Plant Proteins/metabolism
7.
Food Chem ; 452: 139615, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-38754169

ABSTRACT

Screening for pollution-safe cultivars (PSCs) is a cost-effective strategy for reducing health risks of crops in heavy metal (HM)-contaminated soils. In this study, 13 head cabbages were grown in multi-HMs contaminated soil, and their accumulation characteristics, interaction of HM types, and health risks assessment using Monte Carlo simulation were examined. Results showed that the edible part of head cabbage is susceptible to HM contamination, with 84.62% of varieties polluted. The average bio-concentration ability of HMs in head cabbage was Cd> > Hg > Cr > As>Pb. Among five HMs, Cd and As contributed more to potential health risks (accounting for 20.8%-48.5%). Significant positive correlations were observed between HM accumulation and co-occurring HMs in soil. Genotypic variations in HM accumulation suggested the potential for reducing health risks through crop screening. G7 is a recommended variety for head cabbage cultivation in areas with multiple HM contamination, while G3 could serve as a suitable alternative for heavily Hg-contaminated soils.


Subject(s)
Bioaccumulation , Brassica , Metals, Heavy , Soil Pollutants , Soil Pollutants/metabolism , Soil Pollutants/analysis , Soil Pollutants/chemistry , Metals, Heavy/metabolism , Metals, Heavy/analysis , Brassica/chemistry , Brassica/metabolism , Brassica/growth & development , Soil/chemistry , Food Contamination/analysis
8.
Environ Monit Assess ; 196(6): 502, 2024 May 03.
Article in English | MEDLINE | ID: mdl-38700594

ABSTRACT

Water pollution is an inextricable problem that stems from natural and human-related factors. Unfortunately, with rapid industrialization, the problem has escalated to alarming levels. The pollutants that contribute to water pollution include heavy metals (HMs), chemicals, pesticides, pharmaceuticals, and other industrial byproducts. Numerous methods are used for treating HMs in wastewater, like ion exchange, membrane filtration, chemical precipitation, adsorption, and electrochemical treatment. But the remediation through the plant, i.e., phytoremediation is the most sustainable approach to remove the contaminants from wastewater. Aquatic plants illustrate the capacity to absorb excess pollutants including organic and inorganic compounds, HMs, and pharmaceutical residues present in agricultural, residential, and industrial discharges. The extensive exploitation of these hyperaccumulator plants can be attributed to their abundance, invasive mechanisms, potential for bioaccumulation, and biomass production. Post-phytoremediation, plant biomass can be toxic to both water bodies and soil. Therefore, the circular bioeconomy approach can be applied to reuse and repurpose the toxic plant biomass into different circular bioeconomy byproducts such as biochar, biogas, bioethanol, and biodiesel is essential. In this regard, the current review highlights the potential strategies for the phytoremediation of HMs in wastewater and various strategies to efficiently reuse metal-enriched biomass material and produce commercially valuable products. The implementation of circular bioeconomy practices can help overcome significant obstacles and build a new platform for an eco-friendlier lifestyle.


Subject(s)
Biodegradation, Environmental , Metals, Heavy , Wastewater , Water Pollutants, Chemical , Metals, Heavy/metabolism , Metals, Heavy/analysis , Wastewater/chemistry , Water Pollutants, Chemical/metabolism , Water Pollutants, Chemical/analysis , Waste Disposal, Fluid/methods , Plants/metabolism
9.
Microbiol Res ; 284: 127738, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38692035

ABSTRACT

This study aimed to (i) investigate the potential for enhanced phytoremediation to remove contaminants from soil historically co-contaminated with petroleum hydrocarbons (PHs) and heavy metals (HMs) and (ii) analyze the expression of crucial bacterial genes and whole metatranscriptomics profiles for better understanding of soil processes during applied treatment. Phytoremediation was performed using Zea mays and supported by the Pseudomonas qingdaonensis ZCR6 strain and a natural biofertilizer: meat and bone meal (MBM). In previous investigations, mechanisms supporting plant growth and PH degradation were described in the ZCR6 strain. Here, ZCR6 survived in the soil throughout the experiment, but the efficacy of PH removal from all soils fertilized with MBM reached 32 % regardless of the bacterial inoculation. All experimental groups contained 2 % (w/w) MBM. The toxic effect of this amendment on plants was detected 30 days after germination, irrespective of ZCR6 inoculation. Among the 17 genes tested using the qPCR method, only expression of the acdS gene, encoding 1-aminocyclopropane-1-carboxylic acid deaminase, and the CYP153 gene, encoding cytochrome P450-type alkane hydroxylase, was detected in soils. Metatranscriptomic analysis of soils indicated increased expression of methane particulated ammonia monooxygenase subunit A (pmoA-amoA) by Nitrosomonadales bacteria in all soils enriched with MBM compared to the non-fertilized control. We suggest that the addition of 2 % (w/w) MBM caused the toxic effect on plants via the rapid release of ammonia, and this led to high pmoA-amoA expression. In parallel, due to its wide substrate specificity, enhanced bacterial hydrocarbon removal in MBM-treated soils was observed. The metatranscriptomic results indicate that MBM application should be considered to improve bioremediation of soils polluted with PHs rather than phytoremediation. However, lower concentrations of MBM could be considered for phytoremediation enhancement. From a broader perspective, these results indicated the superior capability of metatranscriptomics to investigate the microbial mechanisms driving various bioremediation techniques.


Subject(s)
Biodegradation, Environmental , Pseudomonas , Soil Microbiology , Soil Pollutants , Zea mays , Soil Pollutants/metabolism , Zea mays/metabolism , Zea mays/microbiology , Pseudomonas/genetics , Pseudomonas/metabolism , Pseudomonas/isolation & purification , Metals, Heavy/metabolism , Petroleum/metabolism , Soil/chemistry , Hydrocarbons/metabolism , Gene Expression Profiling , Carbon-Carbon Lyases/metabolism , Carbon-Carbon Lyases/genetics , Transcriptome
10.
Environ Monit Assess ; 196(6): 541, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38735978

ABSTRACT

Metal pollution in water, soil, and vegetation is an emerging environmental issue. Therefore, this study investigated the abundance of heavy metals (HMs) within roots and shoots of native plant species i.e., Bromus pectinatus, Cynodon dactylon, Poa annua, Euphorbia heliscopa, Anagallis arvensis, and Stellaria media grown in the adjoining area of municipal wastewater channels of a Pakistani city of Abbottabad. HMs concentrations (mg L-1) in municipal wastewater were: chromium (Cr) (0.55) > nickel (Ni) (0.09) > lead (Pb) (0.07) > cadmium (Cd) (0.03). Accumulation of HMs in both roots and shoots of plant species varied as B. pectinatus > C. dactylon > P. annua > E. heliscopa > A. arvensis > S. media. Irrespective of the plant species, roots exhibited higher concentrations of HMs than shoots. Higher amount of Cr (131.70 mg kg-1) was detected in the roots of B. pectinatus and the lowest amount (81 mg kg-1) in A. arvensis, Highest Cd concentration was found in the shoot of B. pectinatus and the lowest in the E. heliscopa. The highest concentration of Ni was found in the roots of S. media (37.40 mg kg-1) and the shoot of C. dactylon (15.70 mg kg-1) whereas the lowest Ni concentration was achieved in the roots of A. arvensis (12.10 mg kg-1) and the shoot of E. heliscopa (5.90 mg kg-1). The concentration of HMs in individual plant species was less than 1000 mg kg-1. Considering the higher values (> 1) of biological concentration factor (BCF), biological accumulation co-efficient (BAC), and translocation factor (TF), B. pectinatus and S. media species showed greater potential for HMs accumulation than other species. Therefore, these plants might be helpful for the remediation of HM-contaminated soil.


Subject(s)
Environmental Monitoring , Metals, Heavy , Plant Roots , Soil Pollutants , Wastewater , Water Pollutants, Chemical , Metals, Heavy/metabolism , Wastewater/chemistry , Plant Roots/metabolism , Water Pollutants, Chemical/metabolism , Pakistan , Soil Pollutants/metabolism , Plant Shoots/metabolism , Plants/metabolism
11.
Chemosphere ; 358: 142199, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38692366

ABSTRACT

Industrial hemp (Cannabis sativa L.) has great application potential in heavy metal-polluted soils owing to its safe non-food utilization. However, the fate of heavy metals in different varieties of hemp planted in strongly contaminated natural soils remains unknown. Here, we investigated the growth, heavy metal uptake, distribution, and transfer of nine hemp varieties in soils strongly contaminated with Cu, As, Cd, and Pb. Hemp variety and metal type were the main factors affecting the growth and heavy metal uptake in hemp. The nine hemp varieties grew well in the contaminated soils; however, differences existed among the varieties. The biomass of Z3 reached 5669.1 kg hm-1, whereas that of Yunma No. 1 was only 51.8 % of Z3. The plant height, stalk diameter, and stalk bark thickness of Z3 were greater than those of the other varieties, reaching 168 cm, 9.2 mm, and 0.56 mm, respectively. Permanova's analysis revealed that the total effects of Cu, As, Cd, and Pb on the growth of the nine hemp varieties reached 60 %, with leaf As having the greatest effect, reaching 16 %. , Even in strongly contaminated soils, the nine varieties showed poor Cu, As, Cd, and Pb uptake. Most of the Cu, As, Cd, and Pb were retained in the root, reaching 57.7-72.4, 47.6-64.7, 76.0-92.9, and 70.0-87.8 %, respectively. Overall, the Cu, As, Cd, and Pb uptake of Wanma No.1 was the highest among the nine varieties, whereas that of Guangxi Bama was the lowest. These results indicate that hemp is a viable alternative for phytoattenuation in soils contaminated with heavy metals because of its ability to tolerate and accumulate Cu, As, Cd, and Pb in its roots, and Guangxi Bama is superior to the other varieties considering the safe utilization of hemp products.


Subject(s)
Arsenic , Biodegradation, Environmental , Cadmium , Cannabis , Copper , Lead , Metals, Heavy , Soil Pollutants , Soil , Cannabis/growth & development , Cannabis/metabolism , Soil Pollutants/metabolism , Soil Pollutants/analysis , Metals, Heavy/analysis , Metals, Heavy/metabolism , Lead/metabolism , Lead/analysis , Cadmium/metabolism , Cadmium/analysis , Arsenic/metabolism , Arsenic/analysis , Copper/analysis , Soil/chemistry , Biomass , Plant Roots/metabolism , Plant Roots/growth & development
12.
World J Microbiol Biotechnol ; 40(6): 193, 2024 May 06.
Article in English | MEDLINE | ID: mdl-38709343

ABSTRACT

The rapid industrial revolution significantly increased heavy metal pollution, becoming a major global environmental concern. This pollution is considered as one of the most harmful and toxic threats to all environmental components (air, soil, water, animals, and plants until reaching to human). Therefore, scientists try to find a promising and eco-friendly technique to solve this problem i.e., bacterial bioremediation. Various heavy metal resistance mechanisms were reported. Omics technologies can significantly improve our understanding of heavy metal resistant bacteria and their communities. They are a potent tool for investigating the adaptation processes of microbes in severe conditions. These omics methods provide unique benefits for investigating metabolic alterations, microbial diversity, and mechanisms of resistance of individual strains or communities to harsh conditions. Starting with genome sequencing which provides us with complete and comprehensive insight into the resistance mechanism of heavy metal resistant bacteria. Moreover, genome sequencing facilitates the opportunities to identify specific metal resistance genes, operons, and regulatory elements in the genomes of individual bacteria, understand the genetic mechanisms and variations responsible for heavy metal resistance within and between bacterial species in addition to the transcriptome, proteome that obtain the real expressed genes. Moreover, at the community level, metagenome, meta transcriptome and meta proteome participate in understanding the microbial interactive network potentially novel metabolic pathways, enzymes and gene species can all be found using these methods. This review presents the state of the art and anticipated developments in the use of omics technologies in the investigation of microbes used for heavy metal bioremediation.


Subject(s)
Bacteria , Biodegradation, Environmental , Metals, Heavy , Metals, Heavy/metabolism , Bacteria/genetics , Bacteria/metabolism , Bacteria/drug effects , Genome, Bacterial , Proteomics , Transcriptome , Metagenomics , Metagenome , Genomics , Drug Resistance, Bacterial/genetics
13.
Nat Commun ; 15(1): 4482, 2024 May 27.
Article in English | MEDLINE | ID: mdl-38802370

ABSTRACT

Environmental pollutants from different chemical families may reach the gut microbiome, where they can be metabolized and transformed. However, how our gut symbionts respond to the exposure to environmental pollution is still underexplored. In this observational, cohort study, we aim to investigate the influence of environmental pollution on the gut microbiome composition and potential activity by shotgun metagenomics. We select as a case study a population living in a highly polluted area in Campania region (Southern Italy), proposed as an ideal field for exposomic studies and we compare the fecal microbiome of 359 subjects living in areas with high, medium and low environmental pollution. We highlight changes in gut microbiome composition and functionality that were driven by pollution exposure. Subjects from highly polluted areas show higher blood concentrations of dioxin and heavy metals, as well as an increase in microbial genes related to degradation and/or resistance to these molecules. Here we demonstrate the dramatic effect that environmental xenobiotics have on gut microbial communities, shaping their composition and boosting the selection of strains with degrading capacity. The gut microbiome can be considered as a pivotal player in the environment-health interaction that may contribute to detoxifying toxic compounds and should be taken into account when developing risk assessment models. The study was registered at ClinicalTrials.gov with the identifier NCT05976126.


Subject(s)
Environmental Pollutants , Feces , Gastrointestinal Microbiome , Xenobiotics , Humans , Gastrointestinal Microbiome/drug effects , Xenobiotics/metabolism , Environmental Pollutants/metabolism , Environmental Pollutants/toxicity , Female , Male , Feces/microbiology , Italy , Adult , Middle Aged , Environmental Exposure/adverse effects , Metagenomics/methods , Bacteria/genetics , Bacteria/classification , Bacteria/metabolism , Bacteria/drug effects , Bacteria/isolation & purification , Cohort Studies , Metals, Heavy/toxicity , Metals, Heavy/metabolism , Aged , Environmental Pollution/adverse effects , Biodegradation, Environmental
14.
Ecotoxicol Environ Saf ; 279: 116416, 2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38749195

ABSTRACT

Wetland plants play a crucial role in regulating soil geochemistry, influencing heavy metal (HM) speciation, bioavailability, and uptake, thus impacting phytoremediation potential. We hypothesized that variations in HM biogeochemistry within estuarine soils are controlled by distinct estuarine plant species. We evaluated the soils (pH, redox potential, rhizosphere pH, HM total concentration, and geochemical fractionation), plant parts (shoot and root), and iron plaques of three plants growing in an estuary affected by Fe-rich mine tailings. Though the integration of multiple plant and soil analysis, this work emphasizes the importance of considering geochemical pools of HM for predicting their fate. Apart from the predominance of HM associated with Fe oxides, Typha domingensis accumulated the highest Cr and Ni contents in their shoots (> 100 mg kg-1). In contrast, Hibiscus tiliaceus accumulated more Cu and Pb in their roots (> 50 mg kg-1). The differences in rhizosphere soil conditions and root bioturbation explained the different potentials between the plants by altering the soil dynamics and HM's bioavailability, ultimately affecting their uptake. This study suggests that Eleocharis acutangula is not suitable for phytoextraction or phytostabilization, whereas Typha domingensis shows potential for Cr and Ni phytoextraction. In addition, we first showed Hibiscus tiliaceus as a promising wood species for Cu and Pb phytostabilization.


Subject(s)
Biodegradation, Environmental , Estuaries , Metals, Heavy , Soil Pollutants , Soil , Typhaceae , Wetlands , Metals, Heavy/metabolism , Metals, Heavy/analysis , Soil Pollutants/metabolism , Soil Pollutants/analysis , Typhaceae/metabolism , Soil/chemistry , Rhizosphere , Plant Roots/metabolism , Mining
15.
Chemosphere ; 359: 142243, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38759810

ABSTRACT

The decommissioning and normal functioning of nuclear facilities can result in the production and release of airborne particles in the environment. Aquatic biota are expected to be exposed to these particles considering that nuclear facilities are often located near water bodies. Aerosols, such as cement dust, can interact with radionuclides as well as with heavy metals, and therefore elicit not only radiological impacts but also chemical toxicity. In the present study, we aimed to determine the effects of hydrogenated cement particles (HCPs) as a first step before evaluating any radiotoxicity of tritiated cement particles in the marine mussels, Mytilus galloprovincialis. Responses at different levels of biological organisation were assessed, including clearance rate (CR), tissue specific accumulation, DNA damage and transcriptional expression of key stress related genes. Acute (5 h) and medium-term, chronic (11 d) exposures to 1000 µg L-1 HCPs showed that bioaccumulation, assessed using Cu as a proxy and determined by inductively coupled plasma mass spectrometry, was time and tissue dependent. The highest levels of Cu were found in the digestive gland (DG) after 11 d. HCP exposure caused changes in the expression of oxidative and other stress-related genes, including mt20 in DG and gst and sod in the gill after 5 h exposure, while an overexpression of hsp70 in the gill was observed after 11 d. Genotoxic effects in haemocytes were observed after 11 d of HCP exposure. Multivariate analysis indicated that oxidative stress is the most probable factor contributing to overall physiological dysfunction. Our results provide a baseline to perform further studies employing tritiated cement particles. Specifically, future work should focus on the DG since only this tissue showed significant bioaccumulation when compared to the negative control.


Subject(s)
Bioaccumulation , DNA Damage , Mytilus , Water Pollutants, Chemical , Animals , Mytilus/drug effects , Mytilus/metabolism , Water Pollutants, Chemical/toxicity , Water Pollutants, Chemical/metabolism , Construction Materials , Gills/metabolism , Gills/drug effects , Oxidative Stress/drug effects , Metals, Heavy/toxicity , Metals, Heavy/metabolism
16.
World J Microbiol Biotechnol ; 40(6): 191, 2024 May 04.
Article in English | MEDLINE | ID: mdl-38702442

ABSTRACT

Seed endophytes played a crucial role on host plants stress tolerance and heavy metal (HM) accumulation. Dysphania ambrosioides is a hyperaccumulator and showed strong tolerance and extraordinary accumulation capacities of multiple HMs. However, little is known about its seed endophytes response to field HM-contamination, and its role on host plants HM tolerance and accumulation. In this study, the seed endophytic community of D. ambrosioides from HM-contaminated area (H) and non-contaminated area (N) were investigated by both culture-dependent and independent methods. Moreover, Cd tolerance and the plant growth promoting (PGP) traits of dominant endophytes from site H and N were evaluated. The results showed that in both studies, HM-contamination reduced the diversity and richness of endophytic community and changed the most dominant endophyte, but increased resistant species abundance. By functional trait assessments, a great number of dominant endophytes displayed multiple PGP traits and Cd tolerance. Interestingly, soil HM-contamination significantly increased the percentage of Cd tolerance isolates of Agrobacterium and Epicoccum, but significantly decreased the ration of Agrobacterium with the siderophore production ability. However, the other PGP traits of isolates from site H and N showed no significant difference. Therefore, it was suggested that D. ambrosioides might improve its HM tolerance and accumulation through harboring more HM-resistant endophytes rather than PGP endophytes, but to prove this, more work need to be conducted in the future.


Subject(s)
Cadmium , Endophytes , Metals, Heavy , Seeds , Soil Microbiology , Soil Pollutants , Endophytes/metabolism , Endophytes/isolation & purification , Metals, Heavy/metabolism , Seeds/microbiology , Soil Pollutants/metabolism , Cadmium/metabolism , Biodiversity , Bacteria/classification , Bacteria/metabolism , Bacteria/isolation & purification , Bacteria/genetics , Soil/chemistry , Biodegradation, Environmental , Plant Roots/microbiology
17.
Sci Rep ; 14(1): 11282, 2024 05 17.
Article in English | MEDLINE | ID: mdl-38760440

ABSTRACT

This study presents a thorough investigation into the concentration of heavy metals and mineral composition within four distinct coastal flora species: Cyperus conglomeratus, Halopyrum mucronatum, Sericostem pauciflorum, and Salvadora persica. Employing rigorous statistical methodologies such as Pearson coefficient correlation, principal component analysis (PCA), analysis of variance (ANOVA), and interclass correlation (ICC), we aimed to elucidate the bioavailability of heavy metals, minerals, and relevant physical characteristics. The analysis focused on essential elements including copper (Cu), iron (Fe), manganese (Mn), zinc (Zn), magnesium (Mg2+), calcium (Ca2+), sodium (Na+), potassium (K+), and chloride (Cl-), all of which are known to play pivotal roles in the ecological dynamics of coastal ecosystems. Through PCA, we discerned distinctive patterns within PC1 to PC4, collectively explaining an impressive 99.65% of the variance observed in heavy metal composition across the studied flora species. These results underscore the profound influence of environmental factors on the mineral composition of coastal flora, offering critical insights into the ecological processes shaping these vital ecosystems. Furthermore, significant correlations among mineral contents in H. mucronatum; K+ with content of Na+ (r = 0.989) and Mg2+ (r = 0.984); as revealed by ICC analyses, contributed to a nuanced understanding of variations in electrical conductivity (EC), pH levels, and ash content among the diverse coastal flora species. By shedding light on heavy metal and mineral dynamics in coastal flora, this study not only advances our scientific understanding but also provides a foundation for the development of targeted environmental monitoring and management strategies aimed at promoting the ecological sustainability and resilience of coastal ecosystems in the face of ongoing environmental challenges.


Subject(s)
Metals, Heavy , Minerals , Metals, Heavy/analysis , Metals, Heavy/metabolism , Minerals/analysis , Minerals/metabolism , Multivariate Analysis , Ecosystem , Biological Availability , Principal Component Analysis
18.
Environ Sci Pollut Res Int ; 31(23): 34526-34549, 2024 May.
Article in English | MEDLINE | ID: mdl-38709411

ABSTRACT

Hesperidin (HSP), a flavonoid, is a potent antioxidant, metal chelator, mediator of signaling pathways, and regulator of metal uptake in plants. The study examined the ameliorative effects of HSP (100 µM) on Bassia scoparia grown under excessive levels of heavy metals (zinc (500 mg kg-1), copper (400 mg kg-1), cadmium (100 mg kg-1), and chromium (100 mg kg-1)). The study clarifies the underlying mechanisms by which HSP lessens metabolic mayhem to enhance metal stress tolerance and phytoremediation efficiency of Bassia scoparia. Plants manifested diminished growth because of a drop in chlorophyll content and nutrient acquisition, along with exacerbated deterioration of cellular membranes reflected in elevated reactive oxygen species (ROS) production, lipid peroxidation, and relative membrane permeability. Besides the colossal production of cytotoxic methylglyoxal, the activity of lipoxygenase was also higher in plants under metal toxicity. Conversely, hesperidin suppressed the production of cytotoxic ROS and methylglyoxal. Hesperidin improved oxidative defense that protected membrane integrity. Hesperidin caused a more significant accumulation of osmolytes, non-protein thiols, and phytochelatins, thereby rendering metal ions non-toxic. Hydrogen sulfide and nitric oxide endogenous levels were intricately maintained higher in plants treated with HSP. Hesperidin increased metal accumulation in Bassia scoparia and thereby had the potential to promote the reclamation of metal-contaminated soils.


Subject(s)
Biodegradation, Environmental , Hesperidin , Metals, Heavy , Metals, Heavy/metabolism , Hesperidin/metabolism , Metabolic Networks and Pathways/drug effects , Reactive Oxygen Species/metabolism
19.
Mol Biol Rep ; 51(1): 543, 2024 Apr 20.
Article in English | MEDLINE | ID: mdl-38642191

ABSTRACT

Heavy metal stress is a major problem in present scenario and the consequences are well known. The agroecosystems are heavily affected by the heavy metal stress and the question arises on the sustainability of the agricultural products. Heavy metals inhibit the process to influence the reactive oxygen species production. When abundantly present copper metal ion has toxic effects which is mitigated by the exogenous application of Si. The role of silicon is to enhance physical parameters as well as gas exchange parameters. Si is likely to increase antioxidant enzymes in response to copper stress which can relocate toxic metals at subcellular level and remove heavy metals from the cell. Silicon regulates phytohormones when excess copper is present. Rate of photosynthesis and mineral absorption is increased in response to metal stress. Silicon manages enzymatic and non-enzymatic activities to balance metal stress condition. Cu transport by the plasma membrane is controlled by a family of proteins called copper transporter present at cell surface. Plants maintain balance in absorption, use and storage for proper copper ion homeostasis. Copper chaperones play vital role in copper ion movement within cells. Prior to that metallochaperones control Cu levels. The genes responsible in copper stress mitigation are discovered in various plant species and their function are decoded. However, detailed molecular mechanism is yet to be studied. This review discusses about the crucial mechanisms of Si-mediated alleviation of copper stress, the role of copper binding proteins in copper homeostasis. Moreover, it also provides a brief information on the genes, their function and regulation of their expression in relevance to Cu abundance in different plant species which will be beneficial for further understanding of the role of silicon in stabilization of copper stress.


Subject(s)
Copper , Metals, Heavy , Copper/metabolism , Silicon/pharmacology , Silicon/metabolism , Metals, Heavy/metabolism , Antioxidants/metabolism , Plants/metabolism , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Dietary Supplements
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