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1.
Biochemistry ; 60(47): 3621-3632, 2021 11 30.
Article in English | MEDLINE | ID: mdl-34780697

ABSTRACT

Methionine adenosyltransferase (MAT) catalyzes the adenosine 5'-triphosphate (ATP) and l-methionine (l-Met) dependent formation of S-adenosyl-l-methionine (SAM), the principal methyl donor of most biological transmethylation reactions. We carried out in-depth kinetic studies to further understand its mechanism and interaction with a potential regulator, Mat2B. The initial velocity pattern and results of product inhibition by SAM, phosphate, and pyrophosphate, and dead-end inhibition by the l-Met analog cycloleucine (l-cLeu) suggest that Mat2A follows a strictly ordered kinetic mechanism where ATP binds before l-Met and with SAM released prior to random release of phosphate and pyrophosphate. Isothermal titration calorimetry (ITC) showed binding of ATP to Mat2A with a Kd of 80 ± 30 µM, which is close to the Km(ATP) of 50 ± 10 µM. In contrast, l-Met or l-cLeu showed no binding to Mat2A in the absence of ATP; however, binding to l-cLeu was observed in the presence of ATP. The ITC results are fully consistent with the product and dead-inhibition results obtained. We also carried out kinetic studies in the presence of the physiological regulator Mat2B. Under conditions where all Mat2A is found in complex with Mat2B, no significant change in the kinetic parameters was observed despite confirmation of a very high binding affinity of Mat2A to Mat2B (Kd of 6 ± 1 nM). Finally, we found that while Mat2A is unstable at low concentrations (<100 nM), rapidly losing activity at 37 °C, it retained full activity for at least 2 h when Mat2B was present at the known 2:1 Mat2A/Mat2B stoichiometry.


Subject(s)
Methionine Adenosyltransferase/metabolism , Adenosine Triphosphate/metabolism , Enzyme Stability , Humans , Kinetics , Methionine/metabolism , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/isolation & purification , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , S-Adenosylmethionine/metabolism
2.
Biochemistry ; 58(6): 665-678, 2019 02 12.
Article in English | MEDLINE | ID: mdl-30525512

ABSTRACT

Nonribosomal peptide synthetases use tailoring domains to incorporate chemical diversity into the final natural product. A structurally unique set of tailoring domains are found to be stuffed within adenylation domains and have only recently begun to be characterized. PchF is the NRPS termination module in pyochelin biosynthesis and includes a stuffed methyltransferase domain responsible for S-adenosylmethionine (AdoMet)-dependent N-methylation. Recent studies of stuffed methyltransferase domains propose a model in which methylation occurs on amino acids after adenylation and thiolation rather than after condensation to the nascent peptide chain. Herein, we characterize the adenylation and stuffed methyltransferase didomain of PchF through the synthesis and use of substrate analogues, steady-state kinetics, and onium chalcogen effects. We provide evidence that methylation occurs through an SN2 reaction after thiolation, condensation, cyclization, and reduction of the module substrate cysteine and is the penultimate step in pyochelin biosynthesis.


Subject(s)
Bacterial Proteins/chemistry , Methyltransferases/chemistry , Peptide Synthases/chemistry , Phenols/chemistry , Thiazoles/chemistry , Bacterial Proteins/isolation & purification , Catalysis , Catechol O-Methyltransferase/chemistry , Escherichia coli/genetics , Kinetics , Methanocaldococcus/enzymology , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/isolation & purification , Methylation , Methyltransferases/isolation & purification , Peptide Synthases/isolation & purification , Phenols/chemical synthesis , Protein Domains , Pseudomonas aeruginosa/enzymology , S-Adenosylmethionine/analogs & derivatives , Thiazoles/chemical synthesis
3.
Methods Enzymol ; 606: 269-318, 2018.
Article in English | MEDLINE | ID: mdl-30097096

ABSTRACT

The radical SAM enzyme superfamily is large and diverse, with ever-increasing numbers of examples of characterized reactions. This chapter focuses on the methodology we have developed over the last 25 years for working with these enzymes, with the specific examples discussed being the pyruvate formate-lyase activating enzyme (PFL-AE) and lysine 2,3-aminomutase (LAM). Both enzymes are purified from overexpressing Escherichia coli, but differ in that PFL-AE is expressed without an affinity tag and does not require iron-sulfur cluster reconstitution, while LAM purification is carried out through use of a His6 affinity tag and the enzyme benefits from cluster reconstitution. Because of radical SAM enzymes' catalytic need for a [4Fe-4S] cluster, we present methods for characterization and incorporation of a full [4Fe-4S] cluster in addition to enzyme activity assay protocols. Synthesis of SAM (S-adenosyl-l-methionine) and its analogs have played an important role in our mechanistic studies of radical SAM enzymes, and their synthetic methods are also presented in detail.


Subject(s)
Enzyme Assays/methods , Enzymes/metabolism , Escherichia coli Proteins/metabolism , Intramolecular Transferases/metabolism , Methionine Adenosyltransferase/metabolism , S-Adenosylmethionine/metabolism , Acetyltransferases , Enzymes/isolation & purification , Escherichia coli Proteins/isolation & purification , Intramolecular Transferases/isolation & purification , Methionine Adenosyltransferase/isolation & purification , Oxidation-Reduction , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
4.
Nat Chem Biol ; 13(7): 785-792, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28553945

ABSTRACT

S-Adenosyl-L-methionine (SAM) is an enzyme cofactor used in methyl transfer reactions and polyamine biosynthesis. The biosynthesis of SAM from ATP and L-methionine is performed by the methionine adenosyltransferase enzyme family (Mat; EC 2.5.1.6). Human methionine adenosyltransferase 2A (Mat2A), the extrahepatic isoform, is often deregulated in cancer. We identified a Mat2A inhibitor, PF-9366, that binds an allosteric site on Mat2A that overlaps with the binding site for the Mat2A regulator, Mat2B. Studies exploiting PF-9366 suggested a general mode of Mat2A allosteric regulation. Allosteric binding of PF-9366 or Mat2B altered the Mat2A active site, resulting in increased substrate affinity and decreased enzyme turnover. These data support a model whereby Mat2B functions as an inhibitor of Mat2A activity when methionine or SAM levels are high, yet functions as an activator of Mat2A when methionine or SAM levels are low. The ramification of Mat2A activity modulation in cancer cells is also described.


Subject(s)
Methionine Adenosyltransferase/antagonists & inhibitors , Quinolines/pharmacology , S-Adenosylmethionine/metabolism , Triazoles/pharmacology , Allosteric Site/drug effects , Cell Line, Tumor , Dose-Response Relationship, Drug , Humans , Kinetics , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Quinolines/chemistry , Structure-Activity Relationship , Triazoles/chemistry
5.
Acta Biochim Biophys Sin (Shanghai) ; 48(8): 723-31, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27421658

ABSTRACT

Lysine acetylation is one of the most abundant post-translational modifications. However, physiological roles of this modification in bacteria are largely unknown. Previous protein acetylome analysis showed that Escherichia coli adenosylmethionine synthase (MAT) undergoes acetylation in vivo, but the biological functions of this modification still need to be uncovered. In this study, MAT of E. coli was over-expressed and purified. Subsequent mass spectrometry analysis showed that 12 lysine residues of the protein were acetylated. Site-directed mutagenesis analysis was performed and the results showed that acetylated lysine residues play important roles in the enzymatic activity of MAT. Next, deacetylation assay was performed by using CobB as the deacetylase, and the results showed that CobB could deacetylate MAT in vitro In addition, the enzymatic activities of acetylated and deacetylated MAT were compared in vitro, and results showed that acetylation led to a decrease in its enzymatic activity, which could be reversed by CobB deacetylation. Altogether, our data suggest that CobB modulates the enzymatic activity of E. coli MAT in vitro.


Subject(s)
Escherichia coli/enzymology , Lysine/metabolism , Methionine Adenosyltransferase/metabolism , Acetylation , Methionine Adenosyltransferase/isolation & purification
6.
Biotechnol Appl Biochem ; 63(5): 679-689, 2016 Sep.
Article in English | MEDLINE | ID: mdl-26238196

ABSTRACT

Two genes encoding methionine adenosyltransferase, SAM2 from Saccharomyces cerevisiae and metK from Corynebacterium glutamicum, were individually cloned into pDXW-8, the shuttle vector between Escherichia coli and C. glutamicum, and overexpressed in E. coli DH5α and C. glutamicum ATCC13032. In DH5α, both genes were overexpressed and their protein products showed the activity of methionine adenosyltransferase. In ATCC13032, metK was overexpressed, its product MetK showed the enzyme activity and could convert l-methionine to S-adenosyl-l-methionine (SAM). However, when SAM2 was overexpressed in ATCC13032, neither the enzyme activity nor the conversion of SAM from l-methionine was observed. Reverse transcription PCR analysis and SDS-PAGE showed that SAM2 was transcribed but not translated in C. glutamicum. Therefore, SAM2-C, a mutant SAM2, was constructed by codon optimization, and overexpressed in ATCC13032; it was well transcribed and translated, and could convert l-methionine to SAM. Finally, SAM2-C and metK were individually overexpressed in E. coli BL21(DE3), and their products SAM2-C and MetK were purified and characterized. The optimum activity for both enzymes was found at pH 8.5 and 35 °C; SAM2-C and MetK have similar Km for ATP, but quite different Km for l-methionine. These results suggest that SAM2-C and MetK can be useful for developing C. glutamicum to produce SAM.


Subject(s)
Corynebacterium glutamicum/genetics , Genetic Engineering/methods , Methionine Adenosyltransferase/genetics , S-Adenosylmethionine/metabolism , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Codon/genetics , Corynebacterium glutamicum/enzymology , Corynebacterium glutamicum/metabolism , Escherichia coli/genetics , Gene Expression , Methionine Adenosyltransferase/biosynthesis , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/isolation & purification , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics
7.
PLoS One ; 9(10): e108709, 2014.
Article in English | MEDLINE | ID: mdl-25285660

ABSTRACT

S-Adenosylmethionine synthetase (SAMS) catalyzes the synthesis of S-adenosylmethionine (SAM), a precursor for ethylene and polyamine biosynthesis. Here, we report the isolation of the 1498 bp full-length cDNA sequence encoding tetraploid black locust (Robinia pseudoacacia L.) SAMS (TrbSAMS), which contains an open reading frame of 1179 bp encoding 392 amino acids. The amino acid sequence of TrbSAMS has more than 94% sequence identity to SAMSs from other plants, with a closer phylogenetic relationship to SAMSs from legumes than to SAMS from other plants. The TrbSAMS monomer consists of N-terminal, central, and C-terminal domains. Subcellular localization analysis revealed that the TrbSAMS protein localizes mainly to in the cell membrane and cytoplasm of onion epidermal cells and Arabidopsis mesophyll cell protoplasts. Indole-3-butyric acid (IBA)-treated cuttings showed higher levels of TrbSAMS transcript than untreated control cuttings during root primordium and adventitious root formation. TrbSAMS and its downstream genes showed differential expression in shoots, leaves, bark, and roots, with the highest expression observed in bark. IBA-treated cuttings also showed higher SAMS activity than control cuttings during root primordium and adventitious root formation. These results indicate that TrbSAMS might play an important role in the regulation of IBA-induced adventitious root development in tetraploid black locust cuttings.


Subject(s)
Gene Expression Regulation, Plant/drug effects , Genes, Plant , Indoles/pharmacology , Methionine Adenosyltransferase/genetics , Plant Roots/growth & development , Robinia/genetics , Tetraploidy , Amino Acid Sequence , Cloning, Molecular , Ethylenes/metabolism , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Models, Molecular , Molecular Sequence Data , Phylogeny , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/drug effects , Plant Roots/genetics , Polyamines/metabolism , Protein Structure, Secondary , Robinia/anatomy & histology , Robinia/drug effects , Robinia/enzymology , Sequence Alignment , Sequence Analysis, Protein , Subcellular Fractions/enzymology
8.
Appl Biochem Biotechnol ; 172(3): 1241-53, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24154832

ABSTRACT

Methionine adenosyltransferase (MAT, EC2.5.1.6) catalyzes the synthesis of S-adenosylmethionine (SAM) using L-methionine and adenosine triphosphate (ATP) as substrates. The mutant MAT pDS16 was obtained through DNA shuffling previously in our lab. Overexpression of pDS16 in Pichia pastoris led to about 65 % increase of MAT activity and SAM accumulation, compared with the strain overexpressing Saccharomyces cerevisiae MAT gene SAM2. Different strategies were tested to facilitate the expression and purification of pDS16. However, addition of the hexahistidine tag to pDS16 was shown to decrease the enzyme activity, and the yeast α-factor signal sequence could not effectivley direct the secretion of pDS16. The intracellular pDS16 was purified by a simple two-step procedure combining an ion exchange and hydrophobic interaction chromatography. Protein purity was verified by sodium dodecyl sulfate polyacrylamide gel electrophoresis to be 93%, with the specific activity of 1.828 U/mg. Two-dimensional electrophoresis revealed pI of ∼5.5. The purified enzyme followed Michaelis kinetics with a Km of 1.72 and 0.85 mM, and Vmax of 1.54 and 1.15 µmol/min/mg for ATP and L-methionine, respectively. pDS16 exhibited optimal activity at pH 8.5 and 45 °C with the requirement of divalent cation Mg(2+) and was slightly stimulated by the monovalent cation K(+). It showed an improved thermostability, about 50% of the enzyme activity was retained even after preincubation at 50 °C for 2 h.


Subject(s)
DNA Shuffling , Methionine Adenosyltransferase/isolation & purification , Recombinant Proteins/isolation & purification , Adenosine Triphosphate/metabolism , Escherichia coli/enzymology , Gene Expression Regulation, Fungal , Kinetics , Methionine/chemistry , Methionine/metabolism , Methionine Adenosyltransferase/biosynthesis , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/genetics , Pichia/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , S-Adenosylmethionine/chemistry , S-Adenosylmethionine/metabolism , Saccharomyces cerevisiae/enzymology , Streptomycetaceae/enzymology
9.
Arch Biochem Biophys ; 536(1): 64-71, 2013 Aug 01.
Article in English | MEDLINE | ID: mdl-23711747

ABSTRACT

S-adenosyl-l-methionine (AdoMet) synthetase catalyzes the production of AdoMet, the major biological methyl donor and source of methylene, amino, ribosyl, and aminopropyl groups in the metabolism of all known organism. In addition to these essential functions, AdoMet can also serve as the precursor for two different families of quorum sensing molecules that trigger virulence in Gram-negative human pathogenic bacteria. The enzyme responsible for AdoMet biosynthesis has been cloned, expressed and purified from several of these infectious bacteria. AdoMet synthetase (MAT) from Neisseria meningitidis shows similar kinetic parameters to the previously characterized Escherichia coli enzyme, while the Pseudomonas aeruginosa enzyme has a decreased catalytic efficiency for its MgATP substrate. In contrast, the more distantly related MAT from Campylobacter jejuni has an altered quaternary structure and possesses a higher catalytic turnover than the more closely related family members. Methionine analogs have been examined to delineate the substrate specificity of these enzyme forms, and several alternative substrates have been identified with the potential to block quorum sensing while still serving as precursors for essential methyl donation and radical generation reactions.


Subject(s)
Campylobacter jejuni/enzymology , Escherichia coli/enzymology , Methionine Adenosyltransferase/metabolism , Neisseria meningitidis/enzymology , Pseudomonas aeruginosa/enzymology , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Campylobacter jejuni/chemistry , Campylobacter jejuni/genetics , Cloning, Molecular , Escherichia coli/chemistry , Escherichia coli/genetics , Humans , Kinetics , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/isolation & purification , Molecular Sequence Data , Neisseria meningitidis/chemistry , Neisseria meningitidis/genetics , Pseudomonas aeruginosa/chemistry , Pseudomonas aeruginosa/genetics , S-Adenosylmethionine/metabolism , Sequence Alignment , Substrate Specificity
10.
Mol Biochem Parasitol ; 183(2): 166-76, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22449941

ABSTRACT

The rate of treatment failure to antileishmanial chemotherapy in Latin America is up to 64%. Parasite drug resistance contributes to an unknown proportion of treatment failures. Identification of clinically relevant molecular mechanisms responsible for parasite drug resistance is critical to the conservation of available drugs and to the discovery of novel targets to reverse the resistant phenotype. We conducted comparative proteomic-based analysis of Leishmania (Viannia) panamensis lines selected in vitro for resistance to trivalent antimony (Sb(III)) to identify factors associated with antimony resistance. Using 2-dimensional gel electrophoresis, two distinct sub-proteomes (soluble in NP-40/urea and Triton X-114, respectively) of promastigotes of WT and Sb(III)-resistant lines were generated. Overall, 9 differentially expressed putative Sb-resistance factors were detected and identified by mass spectrometry. These constituted two major groups: (a) proteins involved in general stress responses and (b) proteins with highly specific metabolic and transport functions, potentially directly contributing to the Sb-resistance mechanism. Notably, the sulfur amino acid-metabolizing enzymes S-adenosylmethionine synthetase (SAMS) and S-adenosylhomocysteine hydrolase (SAHH) were over-expressed in Sb(III)-resistant lines and Sb(III)-resistant clinical isolates. These enzymes play a central role in the upstream synthesis of precursors of trypanothione, a key molecule involved in Sb-resistance in Leishmania parasites, and suggest involvement of epigenetic regulation in response to drug exposure. These data re-enforce the importance of thiol metabolism in Leishmania Sb resistance, reveal previously unrecognized steps in the mechanism(s) of Sb tolerance, and suggest a cross-talk between drug resistance, metabolism and virulence.


Subject(s)
Antimony/pharmacology , Antiprotozoal Agents/pharmacology , Drug Resistance, Microbial , Leishmania guyanensis/chemistry , Leishmania guyanensis/drug effects , Proteome/analysis , Protozoan Proteins/metabolism , Adenosylhomocysteinase/isolation & purification , Adenosylhomocysteinase/metabolism , Electrophoresis, Gel, Two-Dimensional , Gene Expression , Glutathione/analogs & derivatives , Glutathione/biosynthesis , Humans , Latin America , Mass Spectrometry , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Protozoan Proteins/isolation & purification , Spermidine/analogs & derivatives , Spermidine/biosynthesis
11.
Amino Acids ; 42(1): 361-73, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21132339

ABSTRACT

The methionine adenosyltransferase from the thermophile Methanococcus jannaschii is fully and irreversibly unfolded in the presence of guanidinium chloride. Unfolding of this dimeric protein is a three-state process in which a dimeric intermediate could be identified. The less stable secondary structural elements of the protein are the C-terminal ends of ß-strands E2 and E6, as deduced from the behavior of tyrosine to tryptophan mutants at residues 72 and 170, which are located in the subunit interface. Unraveling of these elements at the monomer interface may soften intersubunit interactions, leading to the observed 85% activity loss. Accumulation of the intermediate was associated with maintenance of residual activity, an increase in the elution volume of the protein upon gel filtration and a decrease in the sedimentation coefficient. Elimination of the remaining enzymatic activity occurred in conjunction with a 50% reduction in helicity and fluorescence alterations illustrating a transient burial of tryptophans at ß-strands E2, E3 and E9. The available 3D-model predicted that these ß-strands are involved in the central and N-terminal domains of the monomer structure. Severe perturbation of this area of the monomer-monomer interface may destroy the remaining intermolecular interactions, thus leading to dissociation and aggregation. Finally, transition to the denatured state includes completion of the changes detected in the microenvironments around tryptophans included at α-helixes H5 and H6, the loops connecting H5-E8 and E9, ß-strands E3 and E12.


Subject(s)
Guanidine/pharmacology , Methionine Adenosyltransferase/chemistry , Temperature , Enzyme Stability/drug effects , Methanococcus/enzymology , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Models, Molecular , Protein Conformation/drug effects , Protein Unfolding/drug effects
12.
Bioprocess Biosyst Eng ; 35(1-2): 173-81, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21989639

ABSTRACT

S-adenosylmethionine synthetase (SAM-s) catalyzes the synthesis of S-adenosylmethionine (SAM), which is essential for methylation, transcription, proliferation, and production of secondary metabolites. Here SAM-s from Pichia ciferrii were selectively cloned using RNA CapFishing and rapid amplification of cDNA ends (RACE). The putative full-length cDNA of SAM-s encoded a 383 amino acid protein (42.6 kDa), which has highly conserved metal binding sites, a phosphate-binding site, and functionally important motifs. The corresponding enzyme was over-expressed in a heterologous host of Pichia pastoris, and then purified to a homogenous form. Enzyme kinetics, immunoblotting, circular dichroism (CD), high performance liquid chromatography (HPLC), and molecular modeling were conducted to characterize the SAM-s from P. ciferrii. Structural and functional studies of SAM-s will provide important insights for industrial applications.


Subject(s)
Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/metabolism , Models, Chemical , Models, Molecular , Pichia/enzymology , S-Adenosylmethionine/chemistry , S-Adenosylmethionine/ultrastructure , Amino Acid Sequence , Enzyme Activation , Enzyme Stability , Methionine Adenosyltransferase/isolation & purification , Molecular Sequence Data , Pichia/classification , Protein Conformation , Species Specificity
13.
Protein Expr Purif ; 79(1): 128-36, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21605677

ABSTRACT

Methionine adenosyltransferase from Euglena gracilis (MATX) is a recently discovered member of the MAT family of proteins that synthesize S-adenosylmethionine. Heterologous overexpression of MATX in Escherichia coli rendered the protein mostly in inclusion bodies under all conditions tested. Therefore, a refolding and purification procedure from these aggregates was developed to characterize the enzyme. Maximal recovery was obtained using inclusion bodies devoid of extraneous proteins by washing under mild urea (2M) and detergent (5%) concentrations. Refolding was achieved in two steps following solubilization in the presence of Mg(2+); chaotrope dilution to <1M and dialysis under reducing conditions. Purified MATX is a homodimer that exhibits Michaelis kinetics with a V(max) of 1.46 µmol/min/mg and K(m) values of approximately 85 and 260 µM for methionine and ATP, respectively. The activity is dependent on Mg(2+) and K(+) ions, but is not stimulated by dimethylsulfoxide. MATX exhibits tripolyphosphatase activity that is stimulated in the presence of S-adenosylmethionine. Far-UV circular dichroism revealed ß-sheet and random coil as the main secondary structure elements of the protein. The high level of sequence conservation allowed construction of a structural model that preserved the main features of the MAT family, the major changes involving the N-terminal domain.


Subject(s)
Euglena gracilis/enzymology , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/genetics , Protein Refolding , Cloning, Molecular , Escherichia coli/genetics , Euglena gracilis/chemistry , Euglena gracilis/genetics , Gene Expression , Inclusion Bodies , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Models, Molecular , Protein Multimerization , Protein Structure, Secondary , Solubility
14.
Biotechnol Prog ; 24(1): 214-20, 2008.
Article in English | MEDLINE | ID: mdl-18078345

ABSTRACT

S-Adenosylmethionine synthetase (SAM synthetase) catalyzes the synthesis of S-adenosylmethionine (SAM), which plays an important role in cellular functions such as methylation, sulfuration, and polyamine synthesis. To develop a simple and effective way to enzymatically synthesize and produce SAM, a soluble form of SAM synthetase encoded by SAM2 from Saccharomyces cerevisiae was successfully produced at high level ( approximately 200 mg/L) by the recombinant methylotrophic yeast Pichia pastoris. The secreted His6-tagged SAM synthetase was purified in a single chromatography step with a yield of approximately 82% for the total activity. The specific activity of the purified synthetase was 23.84 U/mg. The recombinant SAM synthetase could be a kind of allosteric enzyme with negative regulation. The enzyme functioned optimally at a temperature of 35 degrees C and pH 8.5. The stability of the recombinant synthetase and the effectiveness of different factors in preventing the enzyme from inactivation were also studied. Additional experiments were performed in which the recombinant SAM synthetase was purified and immobilized in one step using immobilized metal-chelate affinity chromatography. The immobilized synthetase was found to be 40.4% of the free enzyme activity in catalyzing the synthesis of SAM from dl-Met and ATP.


Subject(s)
Methionine Adenosyltransferase/metabolism , Pichia/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Adenosine Triphosphate/metabolism , Catalysis , Chromatography, Affinity , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Enzymes, Immobilized/isolation & purification , Enzymes, Immobilized/metabolism , Gene Expression Regulation, Enzymologic , Hydrogen-Ion Concentration , Industrial Microbiology/methods , Kinetics , Methionine/metabolism , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/isolation & purification , Recombinant Proteins/isolation & purification , S-Adenosylmethionine/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/isolation & purification , Temperature
15.
FEMS Microbiol Lett ; 225(2): 271-7, 2003 Aug 29.
Article in English | MEDLINE | ID: mdl-12951252

ABSTRACT

The S-adenosylmethionine synthetase gene of the apicomplexan Cryptosporidium parvum (CpSAMS), an agent of diarrhea in immunocompromised and healthy humans and animals is described. CpSAMS is a single-copy, intronless gene of 1221 bp encoding a polypeptide of 406 amino acids with a molecular mass of 44.8 kDa. The gene is AT-rich (61.8%). CpSAMS was expressed in Escherichia coli TB1 cells as a fusion with maltose binding protein. The activity of the recombinant fusion was assayed, and was found to be inhibited by the methionine analog cycloleucine. In order to determine whether CpSAMS was differentially expressed during the life cycle of C. parvum, HCT-8 cells were infected with C. parvum and assayed over 72 h. Semi-quantitative reverse transcription-polymerase chain reaction (RT-PCR) confirmed the differential expression of CpSAMS.


Subject(s)
Cryptosporidium parvum/enzymology , Methionine Adenosyltransferase/genetics , Amino Acid Sequence , Animals , Blotting, Southern , Carrier Proteins/genetics , Carrier Proteins/isolation & purification , Carrier Proteins/metabolism , Cell Line , Cryptosporidium parvum/genetics , Cycloleucine/pharmacology , Enzyme Inhibitors/pharmacology , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Gene Expression Profiling , Kinetics , Maltose-Binding Proteins , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Molecular Sequence Data , Molecular Weight , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sequence Analysis, DNA , Sequence Homology , Transformation, Genetic
16.
Biochemistry ; 41(30): 9358-69, 2002 Jul 30.
Article in English | MEDLINE | ID: mdl-12135357

ABSTRACT

Crystallographic studies of Escherichia coli S-adenosylmethionine synthetase (ATP:L-methionine S-adenosyltransferase, MAT) have defined a flexible polypeptide loop that can gate access to the active site without contacting the substrates. The influence of the length and sequence of this active site loop on catalytic efficiency has been characterized in a mutant in which the E. coli MAT sequence (DRADPLEQ) has been replaced with the distinct sequence of the corresponding region of the otherwise highly homologous rat liver enzyme (HDLRNEEDV). Four additional mutants in which the entire DRADPLEQ sequence was replaced by five, six, seven, or eight glycines have been studied to unveil the effects of loop length and the influence of side chains. In all of the mutants, the maximal rate of S-adenosylmethionine formation (k(cat)) is diminished by more than 200-fold whereas the rate of hydrolysis of the tripolyphosphate intermediate is decreased by less than 3-fold. Thus, the function of the loop is localized to the first step in the overall reaction. The K(m) for methionine increases in all of the oligoglycine mutants, whereas the K(m) values for ATP are not substantially different. The k(cat) for the wild-type enzyme is decreased by increases in solution microviscosity with 55% of the maximal dependence. Thus, a diffusional event is coupled to the chemical step of AdoMet formation, which is known to be rate-limiting. The results indicate that a conformational change, possibly loop closure, is associated with AdoMet synthesis. The data integrate a previously discovered conformational change associated with PPP(i) binding to the E x AdoMet complex into the reaction sequence, reflecting a difference in protein conformation in the E x AdoMet x PPP(i) complex whether it is formed from the E x ATP x methionine complex or from binding of exogenous PPP(i). The temperature dependence of the k(cat) for S-adenosylmethionine formation shows that the removal of the side chains in the glycine mutants causes the activation enthalpy of the reaction to approximately double in each case, while the activation entropy changes from negative in the wild-type enzyme to positive in the mutants. The favorable activation entropy in the mutant-catalyzed reactions may reflect release of water during catalysis, while the negative activation entropy in the reaction catalyzed by the wild-type enzyme apparently reflects reorganization of the loop. The observations point to how nature can fine-tune the activity of an enzyme by modifying substrate and product access to the active site rather than by altering the enzyme x substrate contacts or the catalytic machinery itself.


Subject(s)
Methionine Adenosyltransferase/metabolism , Base Sequence , Binding Sites , Catalysis , DNA Primers , Escherichia coli/enzymology , Kinetics , Methionine Adenosyltransferase/chemistry , Methionine Adenosyltransferase/isolation & purification , Models, Molecular , Protein Conformation , Thermodynamics
17.
J Biol Chem ; 277(5): 3158-67, 2002 Feb 01.
Article in English | MEDLINE | ID: mdl-11698393

ABSTRACT

Methionine adenosyltransferase (MAT) catalyzes the synthesis of s-adenosylmethionine (AdoMet), a metabolite that plays an important role in a variety of cellular functions, such as methylation, sulfuration, and polyamine synthesis. In this study, genomic DNA from the protozoan parasite Leishmania infantum was cloned and characterized. L. infantum MAT, unlike mammalian MAT, is codified by two identical genes in a tandem arrangement and is only weakly regulated by AdoMet. L. infantum MAT mRNA is expressed as a single transcript, with the enzyme forming a homodimer with tripolyphosphatase in addition to MAT activity. Expression of L. infantum MAT in Escherichia coli proves that the MAT and tripolyphosphatase activities are functional in vivo. MAT shows sigmoidal behavior and is weakly inhibited by AdoMet, whereas tripolyphosphatase activity has sigmoidal behavior and is strongly activated by AdoMet. Plasmids containing the regions flanking MAT2 were fused immediately upstream and downstream of the luciferase-coding region and transfected into L. infantum. Subsequent examination of luciferase activity showed that homologous expression in L. infantum promastigotes was dramatically dependent on the presence of polypyrimidine tracts and a spliced leader junction site upstream of the luciferase gene, whereas downstream sequences appeared to have no bearing on expression.


Subject(s)
Leishmania infantum/enzymology , Methionine Adenosyltransferase/metabolism , Amino Acid Sequence , Animals , Cloning, Molecular/methods , DNA Primers , DNA, Protozoan/genetics , DNA, Protozoan/isolation & purification , Electrophoresis, Polyacrylamide Gel , Gene Expression Regulation , Genes, Reporter , Kinetics , Luciferases/genetics , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/isolation & purification , Molecular Sequence Data , Polymerase Chain Reaction/methods , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Reverse Transcriptase Polymerase Chain Reaction , S-Adenosylmethionine/biosynthesis , Sequence Alignment , Sequence Homology, Amino Acid , Substrate Specificity , Transcription, Genetic , Transfection
18.
Protein Expr Purif ; 19(2): 219-26, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10873534

ABSTRACT

Methionine adenosyltransferase (MAT) catalyzes the synthesis of S-adenosylmethionine, the major methyl donor for transmethylation reactions. Attempts to perform structural studies using rat liver MAT have met with problems because the protein purified from cellular extracts is heterogeneous. Overexpression of the enzyme in Escherichia coli rendered most of the protein as inclusion bodies. These aggregates were purified by specific washes using urea and Triton X-100 and used for refolding. Maximal activity was obtained when chaotropic solubilization included the structural cation Mg(2+), the protein concentration was kept below 0.1 mg/ml, and denaturant removal was carried out in a two-step process, namely, a fast dilution followed by dialysis in the presence of 10 mM DTT or GSH/GSSG redox buffers. Refolding by this procedure generated the oligomeric forms, MAT I and III, which were basically indistinguishable from the purified rat liver forms in secondary structure and catalytic properties.


Subject(s)
Escherichia coli/enzymology , Inclusion Bodies/enzymology , Liver/chemistry , Methionine Adenosyltransferase/chemistry , Protein Folding , Animals , Chromatography, Gel , Circular Dichroism , Isoelectric Focusing , Kinetics , Methionine Adenosyltransferase/isolation & purification , Methionine Adenosyltransferase/metabolism , Protein Structure, Secondary , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
19.
J Biol Chem ; 270(31): 18484-90, 1995 Aug 04.
Article in English | MEDLINE | ID: mdl-7629176

ABSTRACT

Site-specific mutagenesis was performed on the structural gene for Escherichia coli S-adenosylmethionine (AdoMet) synthetase to introduce mutations at cysteines 90 and 240, residues previously implicated by chemical modification studies to be catalytically and/or structurally important. The AdoMet synthetase mutants (i.e. MetK/C90A, MetK/C90S, and MetK/C240A) retained up to approximately 10% of wild type activity, demonstrating that neither sulfhydryl is required for catalytic activity. Mutations at Cys-90 produced a mixture of noninterconverting dimeric and tetrameric proteins, suggesting a structural significance for Cys-90. Dimeric Cys-90 mutants retained approximately 1% of wild type activity, indicating a structural influence on enzyme activity. Both dimeric and tetrameric MetK/C90A had up to a approximately 70-fold increase in Km for ATP, while both dimeric and tetrameric MetK/C90S had Km values for ATP similar to the wild type enzyme, suggesting a linkage between Cys-90 and the ATP binding site. MetK/C240A was isolated solely as a tetramer and differed from wild type enzyme only in its 10-fold reduction in specific activity, suggesting that the mutation affects the rate-limiting step of the reaction, which for the wild type enzyme is the joining of ATP and L-methionine to yield AdoMet and tripolyphosphate. Remarkably all of the mutants are much more thermally stable than the wild type enzyme.


Subject(s)
Escherichia coli/enzymology , Methionine Adenosyltransferase/metabolism , Mutation , Adenosine Triphosphate/metabolism , Cysteine/genetics , Cysteine/metabolism , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Escherichia coli/genetics , Kinetics , Methionine/metabolism , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/isolation & purification , Molecular Weight , Mutagenesis, Site-Directed , Protein Conformation , Structure-Activity Relationship
20.
Biochim Biophys Acta ; 1201(3): 397-404, 1994 Dec 15.
Article in English | MEDLINE | ID: mdl-7803470

ABSTRACT

Two peaks of methionine adenosyltransferase (MAT) activity from human erythrocytes were partially purified on a DEAE-cellulose column. Using anti-MAT antibodies, a 60 kDa form of MAT, referred to as rho was identified in peak I. Although rho represented the major MAT protein in crude erythrocyte extracts, the enzyme was very labile and accounted for only 6% of the total MAT activity. Peak II enzyme was stable, and consisted of the previously described catalytic alpha (53 kDa) subunit and the beta subunit (38 kDa), both of which are found in activated human lymphocytes and leukemic cells of lymphoid origin. Mature normal and polycythemic erythrocytes contained predominantly rho as the major MAT protein, while nucleated erythrocytes and reticulocytes contained predominantly the lambda (68 kDa), the major form found in resting human lymphocytes. Human erythroleukemic cells (HEL 92.1.7) contained the alpha, alpha' and beta subunits of MAT, and in this regard was indistinguishable from MAT found in activated lymphocytes and leukemic cells of lymphoid origin (Jurkat). Since rho was generated during the incubation of extracts from resting lymphocytes, which contain predominantly lambda, in the absence of protease inhibitors; the rho form of MAT appears to be derived from the lambda form by proteolytic cleavage. The data indicate that distinct forms of MAT are present at different stages of erythrocyte maturation and reveal the presence of a new form of MAT with reduced activity compared to previously described forms.


Subject(s)
Erythrocytes/enzymology , Leukemia, Erythroblastic, Acute/enzymology , Methionine Adenosyltransferase/chemistry , Cell Separation , Fetal Blood , Humans , Methionine Adenosyltransferase/isolation & purification
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