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1.
Sci Rep ; 11(1): 3928, 2021 02 16.
Article in English | MEDLINE | ID: mdl-33594184

ABSTRACT

Environmental factors such as stress drive the development of drug addiction in genetically vulnerable individuals; the genes underlying this vulnerability are unknown. One strategy for uncovering these genes is to study the impact of environmental manipulation on high-throughput phenotypes that predict drug use and addiction-like behaviors. In the present study, we assessed the viability of this approach by evaluating the relative effects of environmental enrichment and isolation housing on three high-throughput phenotypes known to predict variation on distinct aspects of intravenous drug self-administration. Prior to behavioral testing, male and female C57BL/6J and DBA/2J mice (BXD founders) were housed in enrichment or isolation for ten weeks beginning at weaning. Enrichment significantly reduced novelty reactivity; this effect was significantly more robust in C57BL/6J mice relative to DBA/2J mice. Enrichment significantly reduced novelty preference; this effect was significantly dependent on novel environment characteristics and was significantly more robust in DBA/2J mice relative to C57BL/6J mice. Enrichment significantly increased anxiety; this effect was not strain-dependent. Collectively, these data indicate that (1) environmental enrichment influences novelty reactivity, novelty preference, and anxiety via distinct genetic mechanisms in mice, and (2) the BXD panel can be used to discover the genetic and epigenetic mechanisms underlying this phenomenon.


Subject(s)
Anxiety/genetics , Exploratory Behavior , Mice, Inbred C57BL/psychology , Mice, Inbred DBA/psychology , Social Isolation/psychology , Animals , Behavior, Addictive , Female , Housing, Animal , Male , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Sex Factors
2.
Nat Genet ; 50(11): 1574-1583, 2018 11.
Article in English | MEDLINE | ID: mdl-30275530

ABSTRACT

We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains and find extensive strain-specific haplotype variation. We identify and characterize 2,567 regions on the current mouse reference genome exhibiting the greatest sequence diversity. These regions are enriched for genes involved in pathogen defence and immunity and exhibit enrichment of transposable elements and signatures of recent retrotransposition events. Combinations of alleles and genes unique to an individual strain are commonly observed at these loci, reflecting distinct strain phenotypes. We used these genomes to improve the mouse reference genome, resulting in the completion of 10 new gene structures. Also, 62 new coding loci were added to the reference genome annotation. These genomes identified a large, previously unannotated, gene (Efcab3-like) encoding 5,874 amino acids. Mutant Efcab3-like mice display anomalies in multiple brain regions, suggesting a possible role for this gene in the regulation of brain development.


Subject(s)
Chromosome Mapping , Genetic Loci , Genome , Haplotypes , Mice, Inbred Strains/genetics , Animals , Animals, Laboratory , Chromosome Mapping/veterinary , Haplotypes/genetics , Mice , Mice, Inbred BALB C/genetics , Mice, Inbred C3H/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred CBA/genetics , Mice, Inbred DBA/genetics , Mice, Inbred NOD/genetics , Mice, Inbred Strains/classification , Molecular Sequence Annotation , Phylogeny , Polymorphism, Single Nucleotide , Species Specificity
3.
PLoS One ; 13(3): e0193496, 2018.
Article in English | MEDLINE | ID: mdl-29529061

ABSTRACT

The Illumina Infinium MethylationEPIC provides an efficient platform for profiling DNA methylation in humans at over 850,000 CpGs. Model organisms such as mice do not currently benefit from an equivalent array. Here we used this array to measure DNA methylation in mice. We defined probes targeting conserved regions and performed differential methylation analysis and compared between the array-based assay and affinity-based DNA sequencing of methyl-CpGs (MBD-seq) and reduced representation bisulfite sequencing. Mouse samples consisted of 11 liver DNA from two strains, C57BL/6J (B6) and DBA/2J (D2), that varied widely in age. Linear regression was applied to detect differential methylation. In total, 13,665 probes (1.6% of total probes) aligned to conserved CpGs. Beta-values (ß-value) for these probes showed a distribution similar to that in humans. Overall, there was high concordance in methylation signal between the EPIC array and MBD-seq (Pearson correlation r = 0.70, p-value < 0.0001). However, the EPIC probes had higher quantitative sensitivity at CpGs that are hypo- (ß-value < 0.3) or hypermethylated (ß-value > 0.7). In terms of differential methylation, no EPIC probe detected a significant difference between age groups at a Benjamini-Hochberg threshold of 10%, and the MBD-seq performed better at detecting age-dependent change in methylation. However, the top most significant probe for age (cg13269407; uncorrected p-value = 1.8 x 10-5) is part of the clock CpGs used to estimate the human epigenetic age. For strain, 219 EPIC probes detected significant differential methylation (FDR cutoff 10%) with ~80% CpGs associated with higher methylation in D2. This higher methylation profile in D2 compared to B6 was also replicated by the MBD-seq data. To summarize, we found only a small subset of EPIC probes that target conserved sites. However, for this small subset the array provides a reliable assay of DNA methylation and can be effectively used to measure differential methylation in mice.


Subject(s)
DNA Methylation , Liver/chemistry , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Animals , Conserved Sequence , CpG Islands , Epigenesis, Genetic , Female , Humans , Linear Models , Male , Mice , Oligonucleotide Array Sequence Analysis
4.
Comp Med ; 66(3): 208-15, 2016.
Article in English | MEDLINE | ID: mdl-27298245

ABSTRACT

Whereas early investigations into ulcerative dermatitis (UD) focused on the possibility of a primary dermatopathology, several recent studies have advocated scratching behavior as a primary driver for UD. The aim of this study was to assess whether B6 mice exhibit excessive scratching under resting conditions or when provoked by epidermal barrier disruption. We hypothesized that B6 mice would exhibit more spontaneous scratching behavior and that B6 mice would be more pruritic after mild epidermal barrier injury compared with the other strains and stock tested. The behavior of the retired breeder female C57BL/6J, DBA/2J, BALB/cByJ, and Crl:CD1 mice was videotaped for 60 min. Behavior filming occurred at 17:15 and at 07:00 the next morning prior to (baseline) and after tape-stripping to initiate epidermal barrier disruption. Scratching duration was recorded as brief (less than 3 s) or prolonged (3 s or longer), on the basis of observations during a pilot study. In contrast to the hypothesis, B6 mice did not scratch significantly more frequently, have more long-duration scratching events, nor have a higher median scratching duration of prolonged scratching as compared with the other types of mice tested. In fact, B6 mice showed the lowest average scratching frequency and duration under both conditions. B6 mice demonstrated increased scratching behavior after epidermal barrier disruption, but the increased scratching did not surpass the rate or duration of scratching in the other types of mice tested. These findings do not support the idea that a strain-related tendency toward exaggerated scratching behavior under resting or epidermal barrier disruption conditions predisposes B6 mice to UD.


Subject(s)
Behavior, Animal , Dermatitis/veterinary , Mice, Inbred Strains/genetics , Rodent Diseases/etiology , Animal Welfare , Animals , Dermatitis/etiology , Dermatitis/pathology , Female , Genetic Predisposition to Disease , Mice, Inbred BALB C/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Pruritus/genetics , Pruritus/veterinary , Rodent Diseases/genetics , Rodent Diseases/pathology
5.
PLoS One ; 10(8): e0133132, 2015.
Article in English | MEDLINE | ID: mdl-26241864

ABSTRACT

Familial hypertrophic cardiomyopathy (HCM) is attributed to mutations in genes that encode for the sarcomere proteins, especially Mybpc3 and Myh7. Genotype-phenotype correlation studies show significant variability in HCM phenotypes among affected individuals with identical causal mutations. Morphological changes and clinical expression of HCM are the result of interactions with modifier genes. With the exceptions of angiotensin converting enzyme, these modifiers have not been identified. Although mouse models have been used to investigate the genetics of many complex diseases, natural murine models for HCM are still lacking. In this study we show that the DBA/2J (D2) strain of mouse has sequence variants in Mybpc3 and Myh7, relative to widely used C57BL/6J (B6) reference strain and the key features of human HCM. Four-month-old of male D2 mice exhibit hallmarks of HCM including increased heart weight and cardiomyocyte size relative to B6 mice, as well as elevated markers for cardiac hypertrophy including ß-myosin heavy chain (MHC), atrial natriuretic peptide (ANP), brain natriuretic peptide (BNP), and skeletal muscle alpha actin (α1-actin). Furthermore, cardiac interstitial fibrosis, another feature of HCM, is also evident in the D2 strain, and is accompanied by up-regulation of type I collagen and α-smooth muscle actin (SMA)-markers of fibrosis. Of great interest, blood pressure and cardiac function are within the normal range in the D2 strain, demonstrating that cardiac hypertrophy and fibrosis are not secondary to hypertension, myocardial infarction, or heart failure. Because D2 and B6 strains have been used to generate a large family of recombinant inbred strains, the BXD cohort, the D2 model can be effectively exploited for in-depth genetic analysis of HCM susceptibility and modifier screens.


Subject(s)
Cardiomyopathy, Hypertrophic, Familial/genetics , Carrier Proteins/genetics , Disease Models, Animal , Mice, Inbred DBA/genetics , Myosin Heavy Chains/genetics , Actins/blood , Animals , Biomarkers , Blood Pressure , Cardiomyopathy, Hypertrophic, Familial/blood , Cardiomyopathy, Hypertrophic, Familial/diagnostic imaging , Cardiomyopathy, Hypertrophic, Familial/pathology , Fibrosis , Gene Expression Profiling , Male , Mice , Mice, Inbred C57BL , Myocardium/metabolism , Myocardium/pathology , Myocytes, Cardiac/pathology , Myofibroblasts/pathology , Myosin Heavy Chains/blood , Natriuretic Peptides/blood , Phenotype , RNA, Messenger/biosynthesis , Ultrasonography , Ventricular Dysfunction, Left/etiology , Ventricular Dysfunction, Left/physiopathology
6.
Neuron ; 87(1): 124-38, 2015 Jul 01.
Article in English | MEDLINE | ID: mdl-26074006

ABSTRACT

Chronic itch is a prevalent and debilitating condition for which few effective therapies are available. We harnessed the natural variation across genetically distinct mouse strains to identify transcripts co-regulated with itch behavior. This survey led to the discovery of the serotonin receptor HTR7 as a key mediator of serotonergic itch. Activation of HTR7 promoted opening of the ion channel TRPA1, which in turn triggered itch behaviors. In addition, acute itch triggered by serotonin or a selective serotonin reuptake inhibitor required both HTR7 and TRPA1. Aberrant serotonin signaling has long been linked to a variety of human chronic itch conditions, including atopic dermatitis. In a mouse model of atopic dermatitis, mice lacking HTR7 or TRPA1 displayed reduced scratching and skin lesion severity. These data highlight a role for HTR7 in acute and chronic itch and suggest that HTR7 antagonists may be useful for treating a variety of pathological itch conditions.


Subject(s)
Dermatitis, Atopic/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Pruritus/genetics , RNA, Messenger/metabolism , Receptors, Serotonin/genetics , Transient Receptor Potential Channels/genetics , Acute Disease , Animals , Chronic Disease , Dermatitis, Atopic/metabolism , Disease Models, Animal , Ganglia, Spinal/metabolism , Gene Expression Profiling , Humans , Mice , Mice, Inbred C57BL/metabolism , Mice, Inbred DBA/metabolism , Pruritus/chemically induced , Pruritus/metabolism , Receptors, Serotonin/drug effects , Receptors, Serotonin/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Serotonin/pharmacology , Serotonin Receptor Agonists/pharmacology , Selective Serotonin Reuptake Inhibitors/adverse effects , Selective Serotonin Reuptake Inhibitors/pharmacology , TRPA1 Cation Channel , Transient Receptor Potential Channels/drug effects , Transient Receptor Potential Channels/metabolism
7.
G3 (Bethesda) ; 5(2): 235-9, 2014 Dec 17.
Article in English | MEDLINE | ID: mdl-25520036

ABSTRACT

Current model DBA/2J (D2J) mice lack CD94 expression due to a deletion spanning the last coding exon of the Klrd1 gene that occurred in the mid- to late 1980s. In contrast, DBA/2JRj (D2Rj) mice, crosses derived from DBA/2J before 1984, and C57BL/6J (B6) mice lack the deletion and have normal CD94 expression. For example, BXD lines (BXD1-32) generated in the 1970s by crossing B6 and D2J do not segregate for the exonic deletion and have high expression, whereas BXD lines 33 and greater were generated after 1990 are segregating for the deletion and have highly variable Klrd1 expression. We performed quantitative trait locus analysis of Klrd1 expression by using BXD lines with different generation times and found that the expression difference in Klrd1 in the later BXD set is driven by a strong cis-acting expression quantitative trait locus. Although the Klrd1/CD94 locus is essential for mousepox resistance, the genetic variation among D2 substrains and the later set of BXD strains is not associated with susceptibility to the Influenza A virus PR8 strain. Substrains with nearly identical genetic backgrounds that are segregating functional variants such as the Klrd1 deletion are useful genetic tools to investigate biological function.


Subject(s)
Mice, Inbred DBA/genetics , NK Cell Lectin-Like Receptor Subfamily D/genetics , Animals , Female , Mutation , Quantitative Trait Loci
8.
Biometals ; 27(6): 1291-301, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25190614

ABSTRACT

The purpose of this study was to determine metal ion levels in central visual system structures of the DBA/2J mouse model of glaucoma. We used inductively coupled plasma mass spectrometry (ICP-MS) to measure levels of iron (Fe), copper (Cu), zinc (Zn), magnesium (Mg), manganese (Mn), and calcium (Ca) in the retina and retinal projection of 5-month (pre-glaucomatous) and 10-month (glaucomatous) old DBA/2J mice and age-matched C57BL/6J controls. We used microbeam X-ray fluorescence (µ-XRF) spectrometry to determine the spatial distribution of Fe, Zn, and Cu in the superior colliculus (SC), which is the major retinal target in rodents and one of the earliest sites of pathology in the DBA/2J mouse. Our ICP-MS experiments showed that glaucomatous DBA/2J had lower retinal Fe concentrations than pre-glaucomatous DBA/2J and age-matched C57BL/6J mice. Pre-glaucomatous DBA/2J retina had greater Mg, Ca, and Zn concentrations than glaucomatous DBA/2J and greater Mg and Ca than age-matched controls. Retinal Mn levels were significantly deficient in glaucomatous DBA/2J mice compared to aged-matched C57BL/6J and pre-glaucomatous DBA/2J mice. Regardless of age, the SC of C57BL/6J mice contained greater Fe, Mg, Mn, and Zn concentrations than the SC of DBA/2J mice. Greater Fe concentrations were measured by µ-XRF in both the superficial and deep SC of C57BL/6J mice than in DBA/2J mice. For the first time, we show direct measurement of metal concentrations in central visual system structures affected in glaucoma and present evidence for strain-related differences in metal content that may be specific to glaucomatous pathology.


Subject(s)
Glaucoma/metabolism , Metals/analysis , Mice, Inbred DBA/metabolism , Nerve Degeneration/metabolism , Visual Pathways/chemistry , Animals , Cerebellum/chemistry , Glaucoma/genetics , Mass Spectrometry , Mice , Mice, Inbred C57BL , Mice, Inbred DBA/genetics , Models, Animal , Optic Nerve/chemistry , Retina/chemistry , Spectrometry, X-Ray Emission , Superior Colliculi/chemistry
9.
Exp Anim ; 63(2): 155-67, 2014.
Article in English | MEDLINE | ID: mdl-24770641

ABSTRACT

Neonatal thymectomy (NTx) induces autoimmune gastritis (AIG) in BALB/c mice, a model for human type A chronic atrophic gastritis, but not in DBA/2 mice and rarely in CDF1 mice (a hybrid of BALB/c and DBA/2 mice). The aim of this study was to clarify the mechanisms of AIG-resistance in mice bearing the dominant trait of DBA/2. Linkage groups associated with, and cells related to AIG resistance were examined with CDF1-BALB/c backcrosses. Intracellular staining and flow-cytometric bead array for several cytokines were performed on NTx BALB/c mice and NTx DBA/2-chimeric BALB/c mice receiving DBA/2-bone marrow cells. In NTx BALB/c mice, IFN-γ-secreting CD4(+) T cells were increased, but not in NTx DBA/2 mice. Because Vß6(+) T cell-bearing mice of half of their backcrosses developed AIG, but the other half of Vß6(+) T cell-negative mice developed scarcely, resistance for AIG generation is associated with the presence of the Mls-1a locus on chromosome 1 in DBA/2 mice, which deletes Vß6(+) T cells. NTx DBA/2-chimera BALB/c mice showed dominant production of IL-10 and resistance for AIG, although the deletion of Vß6(+) T cells was found not to be a cause of AIG-resistance from Mls-1a locus segregation experiments. Although NTx DBA/2-chimeric BALB/c mice did not suffer from AIG, they brought immediate precursors of T cells for AIG. It is concluded that DBA/2 mice generate bone marrow-derived cells that produce anti-inflammatory cytokines to prevent the activation of AIG-T cells.


Subject(s)
Autoimmune Diseases/genetics , Autoimmune Diseases/immunology , Bone Marrow Cells , Chromosomes, Mammalian/genetics , Gastritis/genetics , Gastritis/immunology , Genes, Dominant/genetics , T-Lymphocytes/immunology , Animals , Bone Marrow Cells/immunology , Bone Marrow Cells/metabolism , Chimera/genetics , Cytokines/metabolism , Cytokines/physiology , Disease Models, Animal , Disease Resistance/genetics , Female , Humans , Lymphocyte Activation/genetics , Lymphocyte Activation/immunology , Male , Mice , Mice, Inbred BALB C , Mice, Inbred DBA/genetics , T-Lymphocytes/metabolism
10.
Lab Anim ; 47(3): 153-61, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23563122

ABSTRACT

Preliminary studies have suggested a correlation between postsurgical pain and nest building behaviour in laboratory mice. However, there is no standardized measure for estimating pain by means of nest building performance. Here, we investigated nest building under various conditions, and scored nest complexity to assess postsurgical pain. Mice of both sexes, different strains [C57BL/6J, DBA/2J, and B6D2-Tg(Pr-mSMalphaActin)V5rCLR-25], and kept under different housing conditions, showed no differences in their latency to use the offered nest material. Healthy female C57BL/6J mice were engaged 4.3% of the day with nest building and showed three peaks of this behaviour: in the beginning and middle of the light phase, and in the second half of the dark phase. For assessment of postsurgical pain, female C57BL/6J mice underwent a sham embryo transfer +/− different doses of the analgesic carprofen or control treatment. Nest complexity scoring at 9 h after the experimental treatments (i.e. at the end of the light phase) resulted in less than 10% of animals with noticeably manipulated nest material (nestlet) after surgery and more than 75% of healthy mice having built identifiable-to-complex nests or had noticeably manipulated nestlets, while animals after anaesthesia-only showed intermediate nest complexity. Carprofen analgesia resulted in no (5 mg/kg) or only slight (50 mg/kg) improvement of nest complexity after surgery. Thus, nest complexity scoring can be incorporated into daily laboratory routine and can be used in mice as a sensitive tool for detecting reduced wellbeing and general condition, but probably not for determining the efficacy of pain treatment.


Subject(s)
Mice/physiology , Nesting Behavior , Pain Measurement/methods , Animals , Circadian Rhythm , Female , Housing, Animal , Male , Mice/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred C57BL/physiology , Mice, Inbred DBA/genetics , Mice, Inbred DBA/physiology , Sex Characteristics , Time Factors , Videotape Recording
11.
BMC Genomics ; 13: 476, 2012 Sep 13.
Article in English | MEDLINE | ID: mdl-22974136

ABSTRACT

BACKGROUND: miRNAs are short single-stranded non-coding RNAs involved in post-transcriptional gene regulation that play a major role in normal biological functions and diseases. Little is currently known about how expression of miRNAs is regulated. We surveyed variation in miRNA abundance in the hippocampus of mouse inbred strains, allowing us to take a genetic approach to the study of miRNA regulation, which is novel for miRNAs. The BXD recombinant inbred panel is a very well characterized genetic reference panel which allows quantitative trait locus (QTL) analysis of miRNA abundance and detection of correlates in a large store of brain and behavioural phenotypes. RESULTS: We found five suggestive trans QTLs for the regulation of miRNAs investigated. Further analysis of these QTLs revealed two genes, Tnik and Phf17, under the miR-212 regulatory QTLs, whose expression levels were significantly correlated with miR-212 expression. We found that miR-212 expression is correlated with cocaine-related behaviour, consistent with a reported role for this miRNA in the control of cocaine consumption. miR-31 is correlated with anxiety and alcohol related behaviours. KEGG pathway analysis of each miRNA's expression correlates revealed enrichment of pathways including MAP kinase, cancer, long-term potentiation, axonal guidance and WNT signalling. CONCLUSIONS: The BXD reference panel allowed us to establish genetic regulation and characterize biological function of specific miRNAs. QTL analysis enabled detection of genetic loci that regulate the expression of these miRNAs. eQTLs that regulate miRNA abundance are a new mechanism by which genetic variation influences brain and behaviour. Analysis of one of these QTLs revealed a gene, Tnik, which may regulate the expression of a miRNA, a molecular pathway and a behavioural phenotype. Evidence of genetic covariation of miR-212 abundance and cocaine related behaviours is strongly supported by previous functional studies, demonstrating the value of this approach for discovery of new functional roles and downstream processes regulated by miRNA.


Subject(s)
Genetic Variation , Hippocampus/metabolism , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , MicroRNAs/genetics , Quantitative Trait Loci , Animals , Behavior, Animal , Gene Expression Regulation , Male , Mice , MicroRNAs/metabolism , Phenotype , Protein Serine-Threonine Kinases/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism
12.
J Proteome Res ; 10(7): 2905-12, 2011 Jul 01.
Article in English | MEDLINE | ID: mdl-21553863

ABSTRACT

Decades of genetics research comparing mouse strains has identified many regions of the genome associated with quantitative traits. Microarrays have been used to identify which genes in those regions are differentially expressed and are therefore potentially causal; however, genetic variants that affect probe hybridization lead to many false conclusions. Here we used spectral counting to compare brain striata between two mouse strains. Using strain-specific protein databases, we concluded that proteomics was more robust to sequence differences than microarrays; however, some proteins were still significantly affected. To generate strain-specific databases, we used a complete database that contained all of the putative genetic isoforms for each protein. While the increased proteome coverage in the databases led to a 6.8% gain in peptide assignments compared to a nonredundant database, it also necessitated the development of a strategy for grouping similar proteins due to a large number of shared peptides. Of the 4563 identified proteins (2.1% FDR), there were 1807 quantifiable proteins/groups that exceeded minimum count cutoffs. With four pooled biological replicates per strain, we used quantile normalization, ComBat (a package that adjusts for batch effects), and edgeR (a package for differential expression analysis of count data) to identify 101 differentially expressed proteins/groups, 84 of which had a coding region within one of the genomic regions of interest identified by the Portland Alcohol Research Center.


Subject(s)
Corpus Striatum/chemistry , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Protein Isoforms/analysis , Proteins/analysis , Proteome/genetics , Proteomics/methods , Quantitative Trait Loci , Alcohol Drinking/genetics , Algorithms , Amino Acid Sequence , Animals , Behavior, Animal/drug effects , Databases, Protein , Ethanol/administration & dosage , Male , Mass Spectrometry , Mice , Molecular Sequence Data , Multigene Family , Open Reading Frames , Polymorphism, Single Nucleotide , Protein Isoforms/chemistry , Protein Isoforms/genetics , Proteins/chemistry , Proteins/genetics , Species Specificity
13.
Undersea Hyperb Med ; 38(1): 3-9, 2011.
Article in English | MEDLINE | ID: mdl-21384758

ABSTRACT

Previous attempts to characterize the genetic contribution to differential risk of developing the HPNS seizure in a mouse model system are extended to additional data and an analytical mode that incorporates the set of linked resources for systems genetics in the GeneNetwork project. A quantitative trait locus (QTL) affecting HPNS seizure phenotype was mapped to a approximately 6 megabase (Mb) gene-rich region of Chr 17 based on the degree of expression covariation among genes in the region of the QTL and genes in the brains of BXD recombinant inbred mice in the same chromosomal region. Use of GeneNetwork's WebQTL analytical modules revealed that among > 220 positional candidate genes, vacuolar protein sorting gene 52 (Vps52) has highest priority. It appears that a single nearly null mutation in a distal region of Vps52 3'UTR (untranslated region) defined by a DNA probe set is associated with > 60% of the seizure risk difference between the high- and low-risk strains DBA/2 and C57BL/6, respectively. Based on the known contribution of the elements of the GARP complex--Vps52, -53 and -54--to motoneuron abnormalities, mutation-depleted Vps52 may be implicated in HPNS seizure risk variation in the mouse and, by gene homology, also with human VPS52.


Subject(s)
High Pressure Neurological Syndrome/genetics , Major Histocompatibility Complex/genetics , Mutation/genetics , Proteins/genetics , Quantitative Trait Loci/genetics , Seizures/genetics , Animals , Chromosomes, Human, Pair 17/genetics , Crosses, Genetic , Diving/physiology , Genetic Predisposition to Disease/genetics , Genome-Wide Association Study/methods , Helium , Humans , Mice , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Oxygen , Polymorphism, Single Nucleotide , Risk , Vesicular Transport Proteins/genetics
14.
Aging Clin Exp Res ; 22(1): 8-19, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20305363

ABSTRACT

BACKGROUND AND AIMS: Genes associated with longevity have been identified using both single gene and genome-wide approaches in a variety of species. The aim of this study was to identify quantitative trait loci (QTLs) that influence longevity in male and female mice from twenty-three C57BL/6J by DBA/2J (BXD) recombinant inbred (RI) strains. METHODS: Approximately 12 animals of each sex for each RI strain were maintained under standard conditions until natural death or moribundity criteria were met. RESULTS: A number of life span-relevant loci previously reported on chromosomes (Chrs) 7, 8, 10 and 11 were confirmed. In addition, 5 previously unreported QTLs for mouse life span on Chrs 1, 2, 6, 11, and X were identified as significant and 3 QTLs on Chrs 5, 8, and 16 were suggestive. CONCLUSIONS: Several QTLs were coincident in males and females although the modest correlation between male and female median lifespans and the identification of sex specific QTLs provide evidence that the genetic architecture underlying longevity in the sexes may differ substantially. The identification of multiple QTLs for longevity will provide valuable resources for both reductionist and integrationist research into mechanisms of life span determination.


Subject(s)
Longevity/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Quantitative Trait Loci/genetics , Animals , Breeding/methods , Chromosome Mapping , Crosses, Genetic , Female , Genome-Wide Association Study , Humans , Lod Score , Male , Mice , Sex Characteristics
15.
J Virol ; 83(20): 10417-26, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19706712

ABSTRACT

Despite the prevalence of H5N1 influenza viruses in global avian populations, comparatively few cases have been diagnosed in humans. Although viral factors almost certainly play a role in limiting human infection and disease, host genetics most likely contribute substantially. To model host factors in the context of influenza virus infection, we determined the lethal dose of a highly pathogenic H5N1 virus (A/Hong Kong/213/03) in C57BL/6J and DBA/2J mice and identified genetic elements associated with survival after infection. The lethal dose in these hosts varied by 4 logs and was associated with differences in replication kinetics and increased production of proinflammatory cytokines CCL2 and tumor necrosis factor alpha in susceptible DBA/2J mice. Gene mapping with recombinant inbred BXD strains revealed five loci or Qivr (quantitative trait loci for influenza virus resistance) located on chromosomes 2, 7, 11, 15, and 17 associated with resistance to H5N1 virus. In conjunction with gene expression profiling, we identified a number of candidate susceptibility genes. One of the validated genes, the hemolytic complement gene, affected virus titer 7 days after infection. We conclude that H5N1 influenza virus-induced pathology is affected by a complex and multigenic host component.


Subject(s)
Genetic Variation , Host-Pathogen Interactions , Influenza A Virus, H5N1 Subtype/pathogenicity , Mice, Inbred C57BL/virology , Mice, Inbred DBA/virology , Orthomyxoviridae Infections/mortality , Animals , Chemokine CCL2/genetics , Chemokine CCL2/metabolism , Chromosome Mapping , Disease Models, Animal , Disease Susceptibility , Female , Gene Expression Profiling , Humans , Influenza A Virus, H5N1 Subtype/genetics , Influenza, Human/mortality , Influenza, Human/virology , Mice/virology , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Mice, Mutant Strains , Orthomyxoviridae Infections/genetics , Orthomyxoviridae Infections/virology , Quantitative Trait Loci , Recombination, Genetic , Species Specificity , Tumor Necrosis Factor-alpha/genetics , Tumor Necrosis Factor-alpha/metabolism
16.
Behav Genet ; 39(6): 623-31, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19641985

ABSTRACT

Acoustic startle response and its plasticity, e.g., habituation and prepulse inhibition (PPI), have been extensively investigated, being altered in several neuropsychiatric disorders. Yet, little is known about the expression of startle-related behaviors during adolescence, a critical phase in the development of a variety of major neuropsychiatric pathologies. The present study investigated for the first time startle behaviors across adolescence in male mice of the inbred strains C57BL/6J and DBA/2J. Pre-pubertal (4 weeks of age) mice displayed reduced startle reactivity and altered PPI compared to adult animals (8 weeks of age), but these effects were observed only in the C57BL/6J strain. Strain differences were also clearly detected for startle response, habituation, and PPI. All effects were modulated by the intensity of the pulse stimulus and were not confounded by differences in anxiety levels. Our data demonstrate that genetic factors and the early adolescent phase are critically important considerations in the design of mouse models of neuropsychiatric disturbances.


Subject(s)
Genotype , Habituation, Psychophysiologic/genetics , Inhibition, Psychological , Reflex, Startle/genetics , Acoustic Stimulation , Age Factors , Animals , Arousal/genetics , Fear , Male , Mice , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Phenotype , Species Specificity
17.
Genes Brain Behav ; 7(2): 184-92, 2008 Mar.
Article in English | MEDLINE | ID: mdl-17608702

ABSTRACT

The importance of maternal care in shaping an individual's phenotype in health and disease is becoming more and more apparent in both human and animal studies. However, in mouse studies using inbred strains or knockout mice to analyze the genetic influences on the development of normal and aberrant behavioral phenotypes, maternal behavior is very poorly characterized and often ignored. This study provides an extensive analysis of spontaneous maternal behavior of inbred mice in three conditions: (1) comparing two commonly used strains, (2) analyzing the impact of adopting pups from the same strain (intrastrain cross-fostering) and (3) analyzing the impact of adopting pups from a different strain (interstrain cross-fostering). For each condition, maternal behavior was analyzed continuously over 23-h periods on postnatal days 2, 4, 6 and 9. We report that (1) the maternal behavior of C57BL/6J and DBA/2J dams toward their biological offspring is highly similar, (2) intrastrain cross-fostering has minimal impact on maternal behavior of C57BL/6J and DBA/2J dams, (3) interstrain cross-fostering does not modify the strain differences in maternal care observed between AKR and C3H/He mothers and (4) the pup strain does influence the amount of maternal behavior shown by both mothers in interstrain cross-fostering. These latter findings demonstrate that both mother strain and pup strain are key determinants of maternal behavior.


Subject(s)
Crosses, Genetic , Maternal Behavior/physiology , Animals , Animals, Newborn , Female , Foster Home Care , Housing, Animal , Mice , Mice, Inbred AKR/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Species Specificity , Weaning
19.
Alcohol Clin Exp Res ; 31(11): 1846-57, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17850218

ABSTRACT

BACKGROUND: Steroid hormones can influence neuronal excitability and subsequent seizure susceptibility through genomic and nongenomic mechanisms. For example, there are proconvulsant steroids such as estradiol and corticosterone and anticonvulsant steroids such as testosterone, progesterone, and their GABAergic metabolites. Recent findings indicated that a single, acute administration of ethanol increased levels of GABAergic steroids and that the source of this increase was peripheral organs such as the adrenals and gonads. Thus, the purpose of the present study was to determine the impact of removal of the adrenals and/or gonads on withdrawal severity following a single high dose of ethanol in 2 genotypes that differ in ethanol withdrawal severity. METHOD: Male and female C57BL/6J (B6) and DBA/2J (D2) mice were either left intact (SHAM), adrenalectomized (ADX), gonadectomized (GDX), or underwent ADX/GDX surgery. Seven days following surgery, baseline handling-induced convulsions (HICs) were measured prior to administration of a 4 g/kg dose of ethanol. HICs were assessed following the ethanol injection, then hourly for 12 hours and at 24 hours. A separate group of mice were used to measure the impact of surgical status on ethanol metabolism at 30, 60, 120, and 240 minutes after a single 4 g/kg dose of ethanol. RESULTS: ADX and ADX/GDX treatments in male B6 and D2 mice increased ethanol withdrawal severity following a single dose of ethanol, measured by area under the withdrawal curve and peak HIC scores. Acute ethanol withdrawal also was increased in female D2 mice that had undergone ADX/GDX. In contrast, surgical status did not alter ethanol withdrawal severity in female B6 mice. Surgical status had only minor effects on ethanol metabolism. CONCLUSIONS: Removal of peripherally derived steroids with anticonvulsant properties significantly increased HIC scores during acute ethanol withdrawal following a single dose of ethanol in male and female D2 mice and in male B6 mice. These increases were not due to changes in ethanol metabolism.


Subject(s)
Central Nervous System Depressants/adverse effects , Ethanol/adverse effects , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Orchiectomy , Ovariectomy , Substance Withdrawal Syndrome/etiology , Animals , Central Nervous System Depressants/blood , Central Nervous System Depressants/pharmacology , Corticosterone/physiology , Dose-Response Relationship, Drug , Estradiol/physiology , Ethanol/blood , Ethanol/pharmacology , Female , Male , Mice , Progesterone/physiology , Seizures/chemically induced , Seizures/genetics , Severity of Illness Index , Substance Withdrawal Syndrome/genetics , Testosterone/physiology
20.
Behav Genet ; 36(6): 923-34, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16786425

ABSTRACT

We trained BALB/c Byllco (C), CD-1, SV 129/SvPasCr1 (129 SV), C57BL/6 (B6) and DBA/2J (D2) mice using the olfactory tubing maze with the hope of gaining insight into behavioral genetics related to learning and memory processes. All strains of mice acquired the odor-reward associations using this new task except the D2 strain. The C, CD-1, and 129 SV consistently remembered the associations from the sixth 20-trial training session, reaching 80% +/- 5 correct responses in session seven. The B6 mice required one more session to reach 76%, while the D2 mice never learned the correct odor-reward associations. All mice learned the paradigm and the timing of the task, although the 129 SV mice decreased slower the inter-trial intervals across sessions. With this new task, D2 mice, with a deficit totally devoted to an impairment on learning and memory, can be used as a model of hippocampal dysfunction, in some respects like that observed in human amnesic patients whose selective hippocampal-dependent memory is deeply impaired. The high-scoring strains (C, CD-1, and 129 SV) seem to be ideal in this task to study a gene-targeting mutation postulated to reduce behavioral performance, and inversely, for D2 mice. The moderate-scoring strain, B6, should be ideal for allowing gene-targeting to go either way. In addition, this new task, which enables automated training of odor associations, could be used for studying the phenomenon of transitivity in mice, as described in rats.


Subject(s)
Discrimination Learning/physiology , Maze Learning/physiology , Mice, Inbred BALB C/genetics , Mice, Inbred C57BL/genetics , Mice, Inbred DBA/genetics , Mice, Inbred Strains/genetics , Reward , Smell/genetics , Animals , Habituation, Psychophysiologic , Male , Mice , Multivariate Analysis , Species Specificity
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