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1.
J Med Virol ; 94(1): 99-109, 2022 01.
Article in English | MEDLINE | ID: mdl-34570905

ABSTRACT

A severe pandemic of Coronavirus Disease (COVID-19) has been sweeping the globe since 2019, and this time, it did not stop, with frequent mutations transforming into virulent strains, for instance, B.1.1.7, B.1.351, and B.1.427. In recent months, a fungal infection, mucormycosis has emerged with more fatal responses and significantly increased mortality rate. To measure the severity and potential alternative approaches against black fungus coinfection in COVID-19 patients, PubMed, Google Scholar, World Health Organization (WHO) newsletters, and other online resources, based on the cases reported and retrospective observational analysis were searched from the years 2015-2021. The studies reporting mucormycosis with Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) coinfection and/or demonstrating potential risk factors, such as a history of diabetes mellitus or suppressed immune system were included, and reports published in non-English language were excluded. More than 20 case reports and observational studies on black fungus coinfection in COVID-19 patients were eligible for inclusion. The results indicated that diabetes mellitus, hyperglycemic, and immunocompromised COVID-19 patients with mucormycosis were at a higher risk. We found that it was prudent to assess the potential risk factors and severity of invasive mycosis via standardized diagnostic and clinical settings. Large-scale studies need to be conducted to identify early biomarkers and optimization of diagnostic methods has to be established per population and geographical variation. This will not only help clinicians around the world to detect the coinfection in time but also will prepare them for future outbreaks of other potential pandemics.


Subject(s)
COVID-19/epidemiology , Coinfection/epidemiology , Mucormycosis/epidemiology , Mucormycosis/mortality , SARS-CoV-2/isolation & purification , Diabetes Mellitus/pathology , Humans , Hyperglycemia/pathology , Immunocompromised Host/physiology , Mucorales/growth & development , Mucorales/isolation & purification , Mucormycosis/pathology , Retrospective Studies , Risk Factors
2.
Biotechnol Lett ; 43(9): 1821-1830, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34185215

ABSTRACT

PURPOSE: There are several studies on the use of RNA interference (RNAi) for gene function analysis in fungi. However, most studies on filamentous fungi are based on in vitro-transcribed or -synthesized small interfering RNA (siRNA), and only a few have reported the use of vector-based RNAi. Here we want to develop and evaluate a new vector-based RNAi method using the mouse U6 promoter to drive short hairpin RNA (shRNA) expression in the filamentous fungi. METHODS: Molecular techniques were employed to develop and evaluate a new vector-based RNAi method using the mouse U6 promoter to drive short hairpin RNA (shRNA) expression in the filamentous fungus Blakeslea trispora. RESULTS: We characterized the mouse U6 promoter and utilized it for the expression of shRNA in B. trispora. Using real-time polymerase chain reaction and western blotting analyses, we confirmed the decrease in the mRNA and protein expression of carRA, respectively, in cells transformed with the mouse U6 promoter-driven shRNA expression vector. This indicated that the shRNA was transcribed from the mouse U6 promoter and correctly processed into siRNA and that the mouse U6 promoter exhibited transcription ability in the filamentous fungi. CONCLUSIONS: The results suggest that the mouse U6 promoter that drives the expression of shRNA vectors may serve as a novel tool for RNAi induction in filamentous fungi.


Subject(s)
Fungal Proteins/genetics , Mucorales/growth & development , RNA, Small Interfering/genetics , Animals , Gene Expression Regulation, Fungal , Mice , Mucorales/genetics , Plasmids/genetics , Promoter Regions, Genetic , RNA Interference
3.
Int J Mol Sci ; 22(6)2021 Mar 10.
Article in English | MEDLINE | ID: mdl-33802075

ABSTRACT

The high biological activity of the chromene compounds coupled with the intriguing optical features of azo chromophores prompted our desire to construct novel derivatives of chromene incorporating azo moieties 4a-l, which have been prepared via a three-component reaction of 1-naphthalenol-4-[(4-ethoxyphenyl) azo], 1, with the benzaldehyde derivatives and malononitrile. The structural identities of the azo-chromene 4a-l were confirmed on the basis of their spectral data and elemental analysis, and a UV-visible study was performed in a Dimethylformamide (DMF) solution for these molecules. Additionally, the antimicrobial activity was investigated against four human pathogens (Gram-positive and Gram-negative bacteria) and four fungi, employing an agar well diffusion method, with their minimum inhibitory concentrations being reported. Molecules 4a, 4g, and 4h were discovered to be more efficacious against Syncephalastrum racemosum (RCMB 05922) in comparison to the reference drugs, while compounds 4b and 4h demonstrated the highest inhibitory activity against Escherichia coli (E. coli) in evaluation against the reference drugs. Moreover, their cytotoxicity was assessed against three different human cell lines, including human colon carcinoma (HCT-116), human hepatocellular carcinoma (HepG-2), and human breast adenocarcinoma (MCF-7) with a selection of molecules illustrating potency against the HCT-116 and MCF-7 cell lines. Furthermore, the molecular modeling results depicted the binding interactions of the synthesized compounds 3b and 3h in the active site of the E. coli DNA gyrase B enzyme with a clear SAR (structure-activity relationship) analysis. Lastly, the density functional theory's (DFTs) theoretical calculations were performed to quantify the energy levels of the Frontier Molecular Orbitals (FMOs) and their energy gaps, dipole moments, and molecular electrostatic potentials. These data were utilized in the chemical descriptor estimations to confirm the biological activity.


Subject(s)
Anti-Infective Agents , Antineoplastic Agents , Azo Compounds , Benzopyrans , Cell Proliferation/drug effects , Computer Simulation , Escherichia coli/growth & development , Mucorales/growth & development , Neoplasms/drug therapy , Anti-Infective Agents/chemical synthesis , Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Azo Compounds/chemical synthesis , Azo Compounds/chemistry , Azo Compounds/pharmacology , Benzopyrans/chemical synthesis , Benzopyrans/chemistry , Benzopyrans/pharmacology , HCT116 Cells , Hep G2 Cells , Humans , MCF-7 Cells , Neoplasms/metabolism , Neoplasms/pathology
4.
Med Mycol ; 59(7): 694-700, 2021 Jul 06.
Article in English | MEDLINE | ID: mdl-33369666

ABSTRACT

Alveolar macrophages (AM) are the first-line lung defense against Mucorales in pulmonary mucormycosis. Since corticosteroid use is a known risk factor for mucormycosis, the aim of this study was to describe the role of corticosteroids on AM capacities to control Lichtheimia corymbifera spore growth using a new ex vivo model. An in vivo mouse model was developed to determine the acetate cortisone dose able to trigger pulmonary invasive infection. Then, in the ex vivo model, male BALB/c mice were pretreated with the corticosteroid regimen triggering invasive infection, before AM collection through bronchoalveolar lavage. AMs from corticosteroid-treated mice and untreated control AMs were then exposed to L. corymbifera spores in vitro (ratio 1:5). AM control of fungal growth, adherence/phagocytosis, and oxidative burst were assessed using optical densities by spectrophotometer, flow cytometry, and 2', 7'-dichlorofluoresceine diacetate fluorescence, respectively. Cortisone acetate at 500 mg/kg, at D-3 and at D0, led to pulmonary invasive infection at D3. Co-incubated spores and AMs from corticosteroid-treated mice had significantly higher absorbance (fungal growth) than co-incubated spores and control AMs, at 24 h (P = .025), 36 h (P = .004), and 48 h (P = .001). Colocalization of spores with AMs from corticosteroid-treated mice was significantly lower than for control AMs (7.6 ± 1.9% vs 22.3 ± 5.8%; P = .003), reflecting spore adherence and phagocytosis inhibition. Finally, oxidative burst was significantly increased when control AMs were incubated with spores (P = 0.029), while corticosteroids hampered oxidative burst from treated AMs (P = 0.321). Corticosteroids enhanced fungal growth of L. corymbifera through AM phagocytosis inhibition and burst oxidative decrease in our ex vivo model. LAY SUMMARY: The aim of this study was to describe the impact of corticosteroids on alveolar macrophage (AM) capacities to control Mucorales growth in a new murine ex vivo model. Corticosteroids enhanced fungal growth of L. corymbifera through AM phagocytosis inhibition and burst oxidative decrease.


Subject(s)
Adrenal Cortex Hormones/administration & dosage , Lung/microbiology , Macrophages, Alveolar/drug effects , Mucorales/drug effects , Phagocytosis/drug effects , Spores, Fungal/drug effects , Animals , Disease Models, Animal , Humans , Lung/drug effects , Macrophages, Alveolar/microbiology , Male , Mice , Mice, Inbred BALB C , Mucorales/growth & development , Mucormycosis/immunology , Mucormycosis/microbiology
5.
Int J Mol Sci ; 21(12)2020 Jun 16.
Article in English | MEDLINE | ID: mdl-32560213

ABSTRACT

We investigated the influence of corn steep liquor (CSL) and cassava waste water (CWW) as carbon and nitrogen sources on the morphology and production of biomass and chitosan by Mucor subtilissimus UCP 1262 and Lichtheimia hyalospora UCP 1266. The highest biomass yields of 4.832 g/L (M. subtilissimus UCP 1262) and 6.345 g/L (L. hyalospora UCP 1266) were produced in assay 2 (6% CSL and 4% CWW), factorial design 22, and also favored higher chitosan production (32.471 mg/g) for M. subtilissimus. The highest chitosan production (44.91 mg/g) by L. hyalospora (UCP 1266) was obtained at the central point (4% of CWW and 6% of CSL). The statistical analysis, the higher concentration of CSL, and lower concentration of CWW significantly contributed to the growth of the strains. The FTIR bands confirmed the deacetylation degree of 80.29% and 83.61% of the chitosan produced by M. subtilissimus (UCP 1262) and L. hyalospora (UCP 1266), respectively. M. subtilissimus (UCP 1262) showed dimorphism in assay 4-6% CSL and 8% CWW and central point. L. hyalospora (UCP 1266) was optimized using a central composite rotational design, and the highest yield of chitosan (63.18 mg/g) was obtained in medium containing 8.82% CSL and 7% CWW. The experimental data suggest that the use of CSL and CWW is a promising association to chitosan production.


Subject(s)
Chitosan/metabolism , Mucor/growth & development , Mucorales/growth & development , Acetylation , Biomass , Carbon/metabolism , Manihot/chemistry , Mucor/metabolism , Mucorales/metabolism , Nitrogen/metabolism , Spectroscopy, Fourier Transform Infrared , Wastewater/chemistry , Zea mays/chemistry
6.
Infect Dis (Lond) ; 52(4): 279-283, 2020 04.
Article in English | MEDLINE | ID: mdl-31973617

ABSTRACT

Background: Due to the low sensitivity of mould culture, clinicians usually depend on the histomorphologic diagnosis of invasive mould infection for empirical antifungal therapy. However, definite diagnosis is not always possible based on the mould morphology. We thus compared the histomorphologic diagnosis with immunohistochemistry (IHC)- and culture-based diagnosis.Methods: All adult patients who underwent tissue biopsy and in whom the histomorphologic diagnosis revealed invasive mould infection were enrolled at a tertiary hospital, Seoul, South Korea, between 1992 and 2014 (retrospectively) and 2015 and 2019 (prospectively). Their histomorphologic diagnoses were classified as two categories: (1) acute-angled branching, septate hyphae with parallel walls and a uniform width ('morphologic aspergillosis') and (2) right-angled branching pauciseptate, broader and ribbon-like hyphae with nonparallel walls ('morphologic mucormycosis').Results: A total of 113 patients were finally analysed and their histomorphologic diagnoses were classified as follows: 51 (45%) with morphologic aspergillosis, 62 (55%) with morphologic mucormycosis. Of the 51 patients with morphologic aspergillosis, 46 (90%) received the same diagnosis based on culture and/or IHC, and the remaining five (10%) gave positive IHC result for mucormycosis. Of the 62 patients with morphologic mucormycosis, 60 (97%) had the same diagnosis based on culture and/or IHC, and the remaining two (3%) yielded a positive aspergillus culture or a positive IHC result for aspergillosis, respectively.Conclusions: The majority of histomorphologic diagnoses appear to be consistent with definitive diagnoses based on sterile culture and IHC tests. However, about 10% of 'morphologic aspergillosis' diagnoses were mucormycosis cases.


Subject(s)
Aspergillosis/diagnosis , Aspergillus , Mucorales , Mucormycosis/diagnosis , Adult , Aspergillus/cytology , Aspergillus/growth & development , Aspergillus/isolation & purification , Cell Culture Techniques , Female , Humans , Immunohistochemistry , Invasive Fungal Infections/diagnosis , Male , Mucorales/cytology , Mucorales/growth & development , Mucorales/isolation & purification , Republic of Korea , Retrospective Studies
7.
Mycopathologia ; 185(5): 765-781, 2020 Oct.
Article in English | MEDLINE | ID: mdl-31734800

ABSTRACT

The order Mucorales is an ancient group of fungi classified in the subphylum Mucoromycotina. Mucorales are mainly fast-growing saprotrophs that belong to the first colonizers of diverse organic materials and represent a permanent part of the human environment. Several species are able to cause human infections (mucormycoses) predominantly in patients with impaired immune system, diabetes, or deep trauma. In this review, we compiled 32 reports on community- and hospital-acquired outbreaks caused by Mucorales. The most common source of mucoralean outbreaks was contaminated medical devices that are responsible for 40.7% of the outbreaks followed by contaminated air (31.3%), traumatic inoculation of soil or foreign bodies (9.4%), and the contact (6.2%) or the ingestion (6.2%) of contaminated plant material. The most prevalent species were Rhizopus arrhizus and R. microsporus causing 57% of the outbreaks. The genus Rhizomucor was dominating in outbreaks related to contaminated air while outbreaks of Lichtheimia species and Mucor circinelloides were transmitted by direct contact. Outbreaks with the involvement of several species are reported. Subtyping of strains revealed clonality in two outbreaks and no close relation in two other outbreaks. Based on the existing data, outbreaks of Mucorales can be caused by heterogeneous sources consisting of different strains or different species. Person-to-person transmission cannot be excluded because Mucorales can sporulate on wounds. For a better understanding and prevention of outbreaks, we need to increase our knowledge on the physiology, ecology, and population structure of outbreak causing species and more subtyping data.


Subject(s)
Mucorales , Mucormycosis , Cross Infection/microbiology , Diabetes Complications/microbiology , Disease Outbreaks , Food Microbiology , Humans , Immunocompromised Host , Molecular Typing/methods , Mucor/growth & development , Mucor/isolation & purification , Mucor/pathogenicity , Mucorales/classification , Mucorales/growth & development , Mucorales/isolation & purification , Mucorales/pathogenicity , Mucormycosis/etiology , Mucormycosis/mortality , Mucormycosis/transmission , Mycological Typing Techniques/methods , Opportunistic Infections/microbiology , Rhizomucor/growth & development , Rhizomucor/isolation & purification , Rhizomucor/pathogenicity , Rhizopus/growth & development , Rhizopus/isolation & purification , Rhizopus/pathogenicity , Rhizopus oryzae/growth & development , Rhizopus oryzae/isolation & purification , Rhizopus oryzae/pathogenicity , Wounds and Injuries/microbiology
8.
Infect Dis (Lond) ; 51(5): 373-376, 2019 05.
Article in English | MEDLINE | ID: mdl-30938208

ABSTRACT

BACKGROUND: Data on whether positive non-sterile fungal culture has the same clinical value as a positive galactomannan (GM) result are limited. METHODS: Patients with biopsy-proven invasive aspergillosis or mucormycosis (over an 8-year period) in whom the results of GM and fungal culture of sputum and/or sinus aspirates were available were enrolled. Biopsy-proven cases were defined if fungal culture from a sterile biopsy specimen gave a positive result and/or hyphae were demonstrated by immunohistochemical staining for aspergillosis and mucormycosis. RESULTS: A total of 71 patients comprising 30 biopsy-proven cases of aspergillosis including 13 cases with positive sterile cultures and 41 biopsy-proven cases of mucormycosis including eight cases with positive sterile cultures were enrolled. Of 30 patients with aspergillosis, 15 (50%) revealed Aspergillus spp. growth from non-sterile site and none exhibited the agents of mucormycosis growth from non-sterile site. However, of 41 patients with mucormycosis, eight (20%) revealed the agents of mucormycosis growth from non-sterile site and three (7%) exhibited Aspergillus spp. growth from non-sterile site. In terms of GM assays, 23 (77%) of 30 patients with aspergillosis revealed positive GM results, and 17 (41%) of 41 patients with mucormycosis revealed positive GM assays. So, positive fungal culture from non-sterile site (88% [23/26]) were better correlated with the diagnosis than positive GM assay (57% [23/40]) (p value = .01). CONCLUSIONS: Positive fungal cultures from non-sterile sites better correlate with the diagnosis of aspergillosis and mucormycosis based on sterile culture results and histopathological findings than positive GM results.


Subject(s)
Aspergillosis/diagnosis , Aspergillus/isolation & purification , Mannans/blood , Microbiological Techniques , Mucorales/isolation & purification , Mucormycosis/diagnosis , Adult , Aged , Aged, 80 and over , Aspergillosis/blood , Aspergillus/growth & development , Bronchoalveolar Lavage Fluid/microbiology , Female , Galactose/analogs & derivatives , Humans , Immunohistochemistry , Male , Middle Aged , Mucorales/growth & development , Mucormycosis/blood , Paraffin Embedding , Republic of Korea , Sputum/microbiology , Sterilization , Tertiary Care Centers , Young Adult
9.
Article in English | MEDLINE | ID: mdl-30275091

ABSTRACT

Isavuconazole may be useful in treating and preventing fungal infections in solid-organ transplant (SOT) recipients due to its safety profile and activity against Aspergillus and some Mucorales Isavuconazole has favorable pharmacokinetics based on clinical trials in various patient populations, but data are limited in SOT recipients. We evaluated the steady-state pharmacokinetics of isavuconazole in 26 SOT recipients receiving the drug intravenously for prophylaxis. There was moderate interpatient variability in isavuconazole pharmacokinetic parameters (coefficients of variation of 51% for the area under the plasma concentration-versus-time curve [AUC] and 59% for the trough plasma concentration [Ctrough]). AUC and steady-state Ctrough were significantly lower in women, patients with a body mass index of ≥18.5 kg/m2, and those receiving hemodialysis. Trough plasma concentrations were highly correlated with AUCs (R2 = 0.94) and can serve as a suitable measure of isavuconazole exposure in patients. In conclusion, moderate interpatient variability in isavuconazole exposure, the identification of factors associated with lower exposure, the recognition that Ctrough is a surrogate marker for AUC, and the availability of a simple analytical method suggest that therapeutic drug monitoring (TDM) may be useful for guiding treatment in at least some SOT recipients. Future studies are needed to correlate isavuconazole exposure with patients' clinical outcomes and to determine the clinical role of TDM.


Subject(s)
Antifungal Agents/pharmacokinetics , Aspergillosis/prevention & control , Immunosuppressive Agents/administration & dosage , Mucormycosis/prevention & control , Nitriles/pharmacokinetics , Organ Transplantation/adverse effects , Pyridines/pharmacokinetics , Triazoles/pharmacokinetics , Adult , Aged , Antifungal Agents/blood , Antifungal Agents/pharmacology , Area Under Curve , Aspergillosis/blood , Aspergillosis/etiology , Aspergillosis/microbiology , Aspergillus/drug effects , Aspergillus/growth & development , Aspergillus/pathogenicity , Drug Monitoring , Female , Humans , Immunosuppressive Agents/adverse effects , Injections, Intravenous , Kidney/surgery , Liver/surgery , Lung/surgery , Male , Middle Aged , Mucorales/drug effects , Mucorales/growth & development , Mucorales/pathogenicity , Mucormycosis/blood , Mucormycosis/etiology , Mucormycosis/microbiology , Nitriles/blood , Nitriles/pharmacology , Prospective Studies , Pyridines/blood , Pyridines/pharmacology , Thoracic Surgery , Transplant Recipients , Triazoles/blood , Triazoles/pharmacology
10.
Prep Biochem Biotechnol ; 48(9): 777-786, 2018.
Article in English | MEDLINE | ID: mdl-30303453

ABSTRACT

The objective of the present study was to optimize parameters for the cultivation of Lichtheimia corymbifera (mesophilic) and Byssochlamys spectabilis (thermophilic) for the production of ß-glucosidases and to compare the catalytic and thermodynamic properties of the partially purified enzymes. The maximum amount of ß-glucosidase produced by L. corymbifera was 39 U/g dry substrate (or 3.9 U/mL), and that by B. spectabilis was 77 U/g (or 7.7 U/mL). The optimum pH and temperature were 4.5 and 55 °C and 4.0 and 50 °C for the enzyme from L. corymbifera and B. spectabilis, respectively. ß-Glucosidase produced by L. corymbifera was stable at pH 4.0-7.5, whereas the enzyme from B. spectabilis was stable at pH 4.0-6.0. Regarding the thermostability, ß-glucosidase produced by B. spectabilis remained stable for 1 h at 50 °C, and that from L. corymbifera was active for 1 h at 45 °C. Determination of thermodynamic parameters confirmed the greater thermostability of the enzyme produced by the thermophilic fungus B. spectabilis, which showed higher values of ΔH, activation energy for denaturation (Ea), and half-life t(1/2). The enzymes were stable in the presence of ethanol and were competitively inhibited by glucose. These characteristics contribute to their use in the simultaneous saccharification and fermentation of vegetable biomass.


Subject(s)
Byssochlamys/enzymology , Cellulases/chemistry , Fungal Proteins/chemistry , Mucorales/enzymology , Byssochlamys/growth & development , Catalysis , Cellulases/antagonists & inhibitors , Cellulases/isolation & purification , Culture Techniques/methods , Enzyme Inhibitors/chemistry , Ethanol/chemistry , Fungal Proteins/antagonists & inhibitors , Fungal Proteins/isolation & purification , Glucose/chemistry , Hydrogen-Ion Concentration , Kinetics , Mucorales/growth & development , Temperature , Thermodynamics
11.
Sci Rep ; 8(1): 7660, 2018 05 16.
Article in English | MEDLINE | ID: mdl-29769603

ABSTRACT

Mucormycosis is an emerging angio-invasive infection caused by Mucorales that presents unacceptable mortality rates. Iron uptake has been related to mucormycosis, since serum iron availability predisposes the host to suffer this infection. In addition, iron uptake has been described as a limiting factor that determines virulence in other fungal infections, becoming a promising field to study virulence in Mucorales. Here, we identified a gene family of three ferroxidases in Mucor circinelloides, fet3a, fet3b and fet3c, which are overexpressed during infection in a mouse model for mucormycosis, and their expression in vitro is regulated by the availability of iron in the culture media and the dimorphic state. Thus, only fet3a is specifically expressed during yeast growth under anaerobic conditions, whereas fet3b and fet3c are specifically expressed in mycelium during aerobic growth. A deep genetic analysis revealed partially redundant roles of the three genes, showing a predominant role of fet3c, which is required for virulence during in vivo infections, and shared functional roles with fet3b and fet3c during vegetative growth in media with low iron concentration. These results represent the first described functional specialization of an iron uptake system during fungal dimorphism.


Subject(s)
Ceruloplasmin/genetics , Fungal Proteins/genetics , Mucorales/enzymology , Mucorales/genetics , Mucormycosis/microbiology , Multigene Family , Virulence/genetics , Animals , Ceruloplasmin/metabolism , Fungal Proteins/metabolism , Gene Expression Regulation, Fungal , Genome, Fungal , Iron/metabolism , Male , Mice , Mucorales/growth & development
13.
Microb Cell Fact ; 16(1): 101, 2017 Jun 09.
Article in English | MEDLINE | ID: mdl-28599651

ABSTRACT

BACKGROUND: Oleaginous fungi can accumulate lipids by utilizing a wide range of waste substrates. They are an important source for the industrial production of omega-6 polyunsaturated fatty acids (gamma-linolenic and arachidonic acid) and have been suggested as an alternative route for biodiesel production. Initial research steps for various applications include the screening of fungi in order to find efficient fungal producers with desired fatty acid composition. Traditional cultivation methods (shake flask) and lipid analysis (extraction-gas chromatography) are not applicable for large-scale screening due to their low throughput and time-consuming analysis. Here we present a microcultivation system combined with high-throughput Fourier transform infrared (FTIR) spectroscopy for efficient screening of oleaginous fungi. RESULTS: The microcultivation system enables highly reproducible fungal fermentations throughout 12 days of cultivation. Reproducibility was validated by FTIR and HPLC data. Analysis of FTIR spectral ester carbonyl peaks of fungal biomass offered a reliable high-throughput at-line method to monitor lipid accumulation. Partial least square regression between gas chromatography fatty acid data and corresponding FTIR spectral data was used to set up calibration models for the prediction of saturated fatty acids, monounsaturated fatty acids, polyunsaturated fatty acids, unsaturation index, total lipid content and main individual fatty acids. High coefficients of determination (R2 = 0.86-0.96) and satisfactory residual predictive deviation of cross-validation (RPDCV = 2.6-5.1) values demonstrated the goodness of these models. CONCLUSIONS: We have demonstrated in this study, that the presented microcultivation system combined with rapid, high-throughput FTIR spectroscopy is a suitable screening platform for oleaginous fungi. Sample preparation for FTIR measurements can be automated to further increase throughput of the system.


Subject(s)
Lipids/analysis , Lipogenesis , Microbiological Techniques , Mucor/metabolism , Mucorales/metabolism , Penicillium/metabolism , Spectroscopy, Fourier Transform Infrared , Biomass , Bioreactors , Fermentation , Mucor/growth & development , Mucorales/growth & development , Penicillium/growth & development
14.
Biometals ; 30(4): 559-564, 2017 08.
Article in English | MEDLINE | ID: mdl-28616783

ABSTRACT

Most fungi are known to synthesize siderophores under iron limitation. However, arbuscular mycorrhizal fungi (AM fungi) have so far not been reported to produce siderophores, although their metabolism is iron-dependent. In an approach to isolate siderophores from AM fungi, we have grown plants of Tagetes patula nana in the presence of spores from AM fungi of the genus Glomus (G. etunicatum, G. mossae & unidentified Glomus sp.) symbiotically under iron limitation and sterile conditions. A siderophore was isolated from infected roots after 2-3 weeks of growth in pots containing low-iron sand with Hoagland solution. HPLC analysis of the root cell lysate revealed a peak at a retention time of 6.7 min which showed iron-binding properties in a chrome azurol S test. The compound was isolated by preparative HPLC and the structure was determined by high resolution electrospray FTICR-MS and GC/MS analysis of the hydrolysis products. From an observed absolute mass to charge ratio (m/z) of 401.11925 [M+H]+ with a relative mass error of ∆ = 0.47 ppm an elemental composition of C16H21N2O10 [M+H]+ was derived, suggesting a molecular weight of 400 Da for glomuferrin. Corresponnding ion masses of m/z 423.10 and m/z 439.06 were asigned to the Na-adduct and K-adduct respectively. A mass of 455.03836 confirmed an Fe- complex with an elemental composition of C16H19N2O10Fe (∆ = 0.15 ppm). GC/MS analysis of the HCl lysate (6 N HCL, 12 h) revealed 1,4 butanediamine. Thus the proposed structure of the isolated siderophore from Glomus species consisted of 1,4 butanediamine amidically linked to two dehydrated citrate residues, similar to the previously identified bis-amidorhizoferrin. Thus, the isolated siderophore (glomuferrin) is a member of the rhizoferrin family previously isolated from fungi of the Mucorales (Zygomycetes).


Subject(s)
Ferric Compounds/isolation & purification , Iron/chemistry , Mucorales/chemistry , Mycorrhizae/chemistry , Putrescine/isolation & purification , Siderophores/isolation & purification , Chromatography, High Pressure Liquid , Ferric Compounds/chemistry , Molecular Weight , Mucorales/growth & development , Mucorales/metabolism , Mycorrhizae/growth & development , Mycorrhizae/metabolism , Putrescine/chemistry , Siderophores/chemistry , Spores, Fungal/growth & development , Spores, Fungal/metabolism , Symbiosis , Tagetes/microbiology
15.
PLoS One ; 12(6): e0179454, 2017.
Article in English | MEDLINE | ID: mdl-28598997

ABSTRACT

Benjaminiella poitrasii, a dimorphic non-pathogenic zygomycetous fungus, exhibits a morphological yeast (Y) to hypha (H) reversible transition in the vegetative phase, sporangiospores (S) in the asexual phase and zygospores (Z) in the sexual phase. To study the gene expression across these diverse morphological forms, suitable reference genes are required. In the present study, 13 genes viz. ACT, 18S rRNA, eEF1α, eEF-Tu,eIF-1A, Tub-α, Tub-b, Ubc, GAPDH, Try, WS-21, NADGDH and NADPGDH were evaluated for their potential as a reference, particularly for studying gene expression during the Y-H reversible transition and also for other asexual and sexual life stages of B. poitrasii. Analysis of RT-qPCR data using geNorm, normFinder and BestKeeper software revealed that genes such as Ubc, 18S rRNA and WS-21 were expressed at constant levels in each given subset of RNA samples from all the morphological phases of B. poitrasii. Therefore, these reference genes can be used to elucidate the role of morpho-genes in B. poitrasii. Further, use of the two most stably expressed genes (Ubc and WS-21) to normalize the expression of the ornithine decarboxylase gene (Bpodc) in different morphological forms of B. poitrasii, generated more reliable results, indicating that our selection of reference genes was appropriate.


Subject(s)
Genes, Fungal , Mucorales/classification , Mucorales/genetics , Real-Time Polymerase Chain Reaction , Cyclic AMP/metabolism , Gene Expression Profiling , Gene Expression Regulation, Fungal , Life Cycle Stages , Mucorales/cytology , Mucorales/growth & development , NADP/metabolism , Spores, Fungal , Transcriptome
16.
Microbiol Spectr ; 5(2)2017 03.
Article in English | MEDLINE | ID: mdl-28332467

ABSTRACT

Although at the level of resolution of genes and molecules most information about mating in fungi is from a single lineage, the Dikarya, many fundamental discoveries about mating in fungi have been made in the earlier branches of the fungi. These are nonmonophyletic groups that were once classified into the chytrids and zygomycetes. Few species in these lineages offer the potential of genetic tractability, thereby hampering the ability to identify the genes that underlie those fundamental insights. Research performed during the past decade has now established the genes required for mating type determination and pheromone synthesis in some species in the phylum Mucoromycota, especially in the order Mucorales. These findings provide striking parallels with the evolution of mating systems in the Dikarya fungi. Other discoveries in the Mucorales provide the first examples of sex-cell type identity being driven directly by a gene that confers mating type, a trait considered more of relevance to animal sex determination but difficult to investigate in animals. Despite these discoveries, there remains much to be gleaned about mating systems from these fungi.


Subject(s)
Genes, Mating Type, Fungal , Homologous Recombination , Mucorales/growth & development , Mucorales/genetics , Pheromones/metabolism
17.
Biosci Biotechnol Biochem ; 81(3): 565-572, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27869536

ABSTRACT

Lichtheimia ramosa is one of the predominant filamentous fungi in Korean traditional nuruk. The nonvolatile and volatile metabolites of L. ramosa cultivated in three growth media: complete medium (CM), potato dextrose broth (PDB), and sabouraud dextrose broth (SDB), were investigated and compared. Among nonvolatile metabolites, serine, lysine, and ornithine increased in CM and PDB cultivated with L. ramosa during the exponential phase. In addition, glucose level increased in CM whereas decreased in PDB and SDB. The major volatile metabolites in the extract samples were acetic acid, ethanol, 3-methyl-2-buten-1-ol, 2-phenylethanol, ethylacetate, 2-furaldehyde, 5-(hydroxymethyl)-2-furaldehyde, 2,3-dihydro-3,5,-dihydroxy-6-methyl-4H-pyran-4-one, and α-humulene. In particular, the levels of volatile metabolites related to makgeolli (e.g., acetic acid, ethanol, and ethyl acetate) were highest in extracts cultivated in CM. On the other hand, the level of 2-phenylethanol was relatively higher in PDB and SDB, possibly due to there being more phenylalanine present in the biomass sample in media.


Subject(s)
Culture Media/chemistry , Food Microbiology , Mucorales/metabolism , Volatile Organic Compounds/analysis , Amino Acids/analysis , Amino Acids/metabolism , Culture Media/metabolism , Cyclopentanes/metabolism , Fatty Acids/analysis , Fatty Acids/metabolism , Food Microbiology/methods , Gas Chromatography-Mass Spectrometry/methods , Glucose/metabolism , Monocyclic Sesquiterpenes , Mucorales/cytology , Mucorales/growth & development , Phenylethyl Alcohol/metabolism , Sesquiterpenes/metabolism , Volatile Organic Compounds/metabolism
18.
Molecules ; 21(8)2016 Aug 09.
Article in English | MEDLINE | ID: mdl-27517888

ABSTRACT

Several new pyrazole, pyridine, [1,2,4]triazolo[1,5-α]pyrimidine, benzimidazo[1,2-a]pyrimidine and 1,2,4-triazolo[3,4-c][1,2,4]triazine derivatives incorporating a thiophene moiety were synthesized from (E)-ethyl 5-(3-(dimethylamino)acryloyl)-4-phenyl-2-(phenylamino)thiophene-3-carboxylate (1). The structures of the newly synthesized compounds were confirmed by IR, ¹H-, (13)C-NMR, mass spectral data and elemental analysis. The antibacterial and antifungal activities of all the synthesized compounds were evaluated. The results indicated that compounds 9, 12, and 19 were found to be more potent than the standard drug Amphotericin B against Aspergillus fumigates. Additionally, compound 12 exhibited higher activity than the standard drug Amphotericin B against Syncephalastrum racemosum.


Subject(s)
Anti-Infective Agents , Aspergillus fumigatus/growth & development , Mucorales/growth & development , Thiophenes , Anti-Infective Agents/chemical synthesis , Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Thiophenes/chemical synthesis , Thiophenes/chemistry , Thiophenes/pharmacology
19.
Mycoses ; 59(10): 628-35, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27292160

ABSTRACT

Mucorales are saprobes, ubiquitously distributed and able to infect a heterogeneous population of human hosts. The fungi require robust stress responses to survive in human host. We tested the growth of Mucorales in the presence of different abiotic stress. Eight pathogenic species of Mucorales, including Rhizopus arrhizus, Rhizopus microsporus, Rhizomucor pusillus, Apophysomyces elegans, Licthemia corymbifera, Cunninghamella bertholletiae, Syncephalastrum racemosum and Mucor racemosus, were exposed to different stress inducers: osmotic (sodium chloride and d-sorbitol), oxidative (hydrogen peroxide and menadione), pH, cell wall and metal ions (Cu, Zn, Fe and Mg). Wide variation in stress responses was noted: R. arrhizus showed maximum resistance to both osmotic and oxidative stresses, whereas R. pusillus and M. indicus were relatively sensitive. Rhizopus arrhizus and R. microsporus showed maximum resistance to alkaline pH, whereas C. bertholletiae, L. corymbifera, M. racemosus and A. elegans were resistant to acidic pH. Maximum tolerance was noted in R. microsporus to Cu, R. microsporus and R. arrhizus to Fe and C. bertholletiae to Zn. In contrast, L. corymbifera, A. elegans and M. indicus were sensitive to Cu, Zn and Fe respectively. In conclusion, R. arrhizus showed high stress tolerance in comparison to other species of Mucorales, and this could be the possible reason for high pathogenic potential of this fungi.


Subject(s)
Mucorales/drug effects , Mucorales/physiology , Rhizomucor/physiology , Rhizopus/physiology , Stress, Physiological , Humans , Hydrogen-Ion Concentration , Metals/pharmacology , Mucorales/growth & development , Osmotic Pressure , Oxidative Stress , Rhizomucor/drug effects , Rhizomucor/growth & development , Rhizopus/drug effects , Rhizopus/growth & development , Rhizopus/immunology , Vitamin K 3/pharmacology
20.
Sci Rep ; 6: 26583, 2016 05 25.
Article in English | MEDLINE | ID: mdl-27220774

ABSTRACT

Not much is known about the mechanism of endophyte-mediated induction of secondary metabolite production in Catharanthus roseus. In the present study two fungal endophytes, Curvularia sp. CATDLF5 and Choanephora infundibulifera CATDLF6 were isolated from the leaves of the plant that were found to enhance vindoline content by 229-403%. The isolated endophytes did not affect the primary metabolism of the plant as the maximum quantum efficiency of PSII, net CO2 assimilation, plant biomass and starch content of endophyte-inoculated plants was similar to endophyte-free control plants. Expression of terpenoid indole alkaloid (TIA) pathway genes, geraniol 10-hydroxylase (G10H), tryptophan decarboxylase (TDC), strictosidine synthase (STR), 16-hydoxytabersonine-O-methyltransferase (16OMT), desacetoxyvindoline-4-hydroxylase (D4H), deacetylvindoline-4-O-acetyltransferase (DAT) were upregulated in endophyte-inoculated plants. Endophyte inoculation upregulated the expression of the gene for transcriptional activator octadecanoid-responsive Catharanthus AP2-domain protein (ORCA3) and downregulated the expression of Cys2/His2-type zinc finger protein family transcriptional repressors (ZCTs). The gene for the vacuolar class III peroxidase (PRX1), responsible for coupling vindoline and catharanthine, was upregulated in endophyte-inoculated plants. These endophytes may enhance vindoline production by modulating the expression of key structural and regulatory genes of vindoline biosynthesis without affecting the primary metabolism of the host plant.


Subject(s)
Catharanthus , Endophytes/growth & development , Gene Expression Regulation, Plant , Mucorales/growth & development , Plant Leaves , Vinblastine/analogs & derivatives , Catharanthus/genetics , Catharanthus/metabolism , Catharanthus/microbiology , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Leaves/microbiology , Vinblastine/metabolism
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