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1.
Sci Rep ; 14(1): 15601, 2024 Jul 06.
Article in English | MEDLINE | ID: mdl-38971913

ABSTRACT

The electrical potential of the mycelia of a cord-forming wood decay fungus, Pholiota brunnescens, was monitored for over 100 days on a plain agar plate during the colonization onto a wood bait. Causality analyses of the electrical potential at different locations of the mycelium revealed a clear and stable causal relationship with the directional flow of the electrical potential from the hyphae at the bait location to other parts of the mycelium. However, this causality disappeared after 60 days of incubation, coinciding with the onset of slow electrical oscillation at the bait location, which occurred over one week per oscillation cycle. We speculated that the hyphae that initially colonized the bait may act as a temporary activity center, which generates electrical signals to other parts of the mycelium, thereby facilitating the colonization of the entire mycelial body to the bait. The week-long electrical oscillation represents the longest oscillation period ever recorded in fungi and warrants further investigation to elucidate its function and stability in response to environmental stimuli.


Subject(s)
Mycelium , Mycelium/physiology , Hyphae/physiology , Ascomycota/physiology , Wood/microbiology
2.
BMC Microbiol ; 23(1): 68, 2023 03 14.
Article in English | MEDLINE | ID: mdl-36918804

ABSTRACT

At particular stages during their life cycles, fungi use multiple strategies to form specialized structures to survive unfavorable environmental conditions. These strategies encompass sporulation, as well as cell-wall melanization, multicellular tissue formation or even dimorphism. The resulting structures are not only used to disperse to other environments, but also to survive long periods of time awaiting favorable growth conditions. As a result, these specialized fungal structures are part of the microbial seed bank, which is known to influence the microbial community composition and contribute to the maintenance of diversity. Despite the importance of the microbial seed bank in the environment, methods to study the diversity of fungal structures with improved resistance only target spores dispersing in the air, omitting the high diversity of these structures in terms of morphology and environmental distribution. In this study, we applied a separation method based on cell lysis to enrich lysis-resistant fungal structures (for instance, spores, sclerotia, melanized yeast) to obtain a proxy of the composition of the fungal seed bank. This approach was first evaluated in-vitro in selected species. The results obtained showed that DNA from fungal spores and from yeast was only obtained after the application of the enrichment method, while mycelium was always lysed. After validation, we compared the diversity of the total and lysis-resistant fractions in the polyextreme environment of the Salar de Huasco, a high-altitude athalassohaline wetland in the Chilean Altiplano. Environmental samples were collected from the salt flat and from microbial mats in small surrounding ponds. Both the lake sediments and microbial mats were dominated by Ascomycota and Basidiomycota, however, the diversity and composition of each environment differed at lower taxonomic ranks. Members of the phylum Chytridiomycota were enriched in the lysis-resistant fraction, while members of the phylum Rozellomycota were never detected in this fraction. Moreover, we show that the community composition of the lysis-resistant fraction reflects the diversity of life cycles and survival strategies developed by fungi in the environment. To the best of our knowledge this is the first time that the fungal diversity is explored in the Salar de Huasco. In addition, the method presented here provides a simple and culture independent approach to assess the diversity of fungal lysis-resistant cells in the environment.


Subject(s)
DNA, Fungal , Fungi , Geologic Sediments , Mycobiome , Spores, Fungal , Ascomycota/genetics , Ascomycota/physiology , Basidiomycota/genetics , Basidiomycota/physiology , Chile , Fungi/genetics , Fungi/physiology , Geologic Sediments/microbiology , Lakes/microbiology , Microbiota/physiology , Mycelium/genetics , Mycelium/isolation & purification , Mycelium/physiology , Mycobiome/physiology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/physiology , Spores, Fungal/genetics , Spores, Fungal/isolation & purification , Spores, Fungal/physiology , Wetlands , DNA, Fungal/genetics , DNA, Fungal/isolation & purification , DNA, Fungal/physiology
3.
Biosystems ; 209: 104507, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34403720

ABSTRACT

Mycelium networks are promising substrates for designing unconventional computing devices providing rich topologies and geometries where signals propagate and interact. Fulfilling our long-term objectives of prototyping electrical analog computers from living mycelium networks, including networks hybridised with nanoparticles, we explore the possibility of implementing Boolean logical gates based on electrical properties of fungal colonies. We converted a 3D image-data stack of Aspergillus niger fungal colony to an Euclidean graph and modelled the colony as resistive and capacitive (RC) networks, where electrical parameters of edges were functions of the edges' lengths. We found that and, or and and-not gates are implementable in RC networks derived from the geometrical structure of the real fungal colony.


Subject(s)
Aspergillus niger/physiology , Computer Simulation , Models, Biological , Mycelium/physiology , Spores, Fungal/physiology , Aspergillus niger/cytology , Colony Count, Microbial , Electric Stimulation , Microscopy, Confocal , Microscopy, Fluorescence
4.
Commun Biol ; 4(1): 647, 2021 05 31.
Article in English | MEDLINE | ID: mdl-34059751

ABSTRACT

Streptomyces are one of the most important industrial microorganisms for the production of proteins and small-molecule drugs. Previously reported flow cytometry-based screening methods can only screen spores or protoplasts released from mycelium, which do not represent the filamentous stationary phase Streptomyces used in industrial cultivation. Here we show a droplet-based microfluidic platform to facilitate more relevant, reliable and rapid screening of Streptomyces mycelium, and achieved an enrichment ratio of up to 334.2. Using this platform, we rapidly characterized a series of native and heterologous constitutive promoters in Streptomyces lividans 66 in droplets, and efficiently screened out a set of engineered promoter variants with desired strengths from two synthetic promoter libraries. We also successfully screened out several hyperproducers of cellulases from a random S. lividans 66 mutant library, which had 69.2-111.4% greater cellulase production than the wild type. Our method provides a fast, simple, and powerful solution for the industrial engineering and screening of Streptomyces in more industry-relevant conditions.


Subject(s)
Microfluidics/methods , Mycelium/metabolism , Streptomyces/metabolism , High-Throughput Screening Assays/methods , Metabolic Engineering/methods , Mycelium/physiology , Promoter Regions, Genetic/genetics , Streptomyces/genetics , Streptomyces lividans/genetics , Streptomyces lividans/metabolism
5.
Microbiol Res ; 248: 126752, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33839506

ABSTRACT

Botrytis cinerea is a plant pathogen causing the gray mold disease in a plethora of host plants. The control of the disease is based mostly on chemical pesticides, which are responsible for environmental pollution, while they also pose risks for human health. Furthermore, B. cinerea resistant isolates have been identified against many fungicide groups, making the control of this disease challenging. The application of biocontrol agents can be a possible solution, but requires deep understanding of the molecular mechanisms in order to be effective. In this study, we investigated the multitrophic interactions between the biocontrol agent Bacillus subtilis MBI 600, a new commercialized biopesticide, the pathogen B. cinerea and their plant host. Our analysis showed that this biocontrol agent reduced B. cinerea mycelial growth in vitro, and was able to suppress the disease incidence on cucumber plants. Moreover, treatment with B. subtilis led to induction of genes involved in plant immunity. RNA-seq analysis of B. cinerea transcriptome upon exposure to bacterial secretome, showed that genes coding for MFS and ABC transporters were highly induced. Deletion of the Bcmfs1 MFS transporter gene, using a CRISP/Cas9 editing method, affected its virulence and the tolerance of B. cinerea to bacterial secondary metabolites. These findings suggest that specific detoxification transporters are involved in these interactions, with crucial role in different aspects of B. cinerea physiology.


Subject(s)
Bacillus subtilis/physiology , Botrytis/drug effects , Crop Protection/methods , Cucumis sativus/microbiology , Plant Diseases/prevention & control , Biological Control Agents/pharmacology , Botrytis/growth & development , Botrytis/physiology , Cucumis sativus/genetics , Cucumis sativus/immunology , Mycelium/drug effects , Mycelium/growth & development , Mycelium/physiology , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Plant Proteins/genetics , Plant Proteins/immunology
6.
PLoS One ; 16(3): e0247563, 2021.
Article in English | MEDLINE | ID: mdl-33690684

ABSTRACT

Diaporthe eres has been recently reported as the causal agent of hazelnut defects, with characteristic brown spots on the kernels surface and internal fruit discoloration. Knowledge regarding the ecology of this fungus is poor but, is critical to support a rationale and effective hazelnut crop protection strategy. Therefore, a study was performed to describe and model the effect of different abiotic factors such as temperature (T, 5-35°C, step 5°C) and water activity (aw 0.83-0.99, step 0.03) regimes on D. eres mycelial growth, pycnidial conidiomata development and asexual spore production during a 60-day incubation period. Alpha conidia germination was tested in the same T range and at different relative humidities (RH = 94, 97 and 100%) over 48 h incubation period. Fungal growth was observed from the first visual observation; regarding pycnidia and cirrhi, their development started after 8 and 19 days of incubation, respectively and increased over time. The optimum T for growth was 20-25°C and for pycnidia and cirrhi development was 30°C; aw ≥ 0.98 was optimal for the tested steps of the fungal cycle. The best condition for conidial germination of D. eres was at 25°C with RH = 100%. Quantitative data obtained were fitted using non- linear regression functions (Bete, logistic and polynomial), which provided a very good fit of the biological process (R2 = 0.793-0.987). These functions could be the basis for the development of a predictive model for the infection of D. eres of hazelnuts.


Subject(s)
Ascomycota/growth & development , Corylus/growth & development , Fruit/growth & development , Mycelium/growth & development , Spores, Fungal/growth & development , Algorithms , Ascomycota/isolation & purification , Ascomycota/physiology , Corylus/microbiology , Fruit/microbiology , Host-Pathogen Interactions , Models, Biological , Mycelium/isolation & purification , Mycelium/physiology , Spores, Fungal/isolation & purification , Spores, Fungal/physiology , Temperature , Water/metabolism
7.
Cells ; 10(2)2021 02 20.
Article in English | MEDLINE | ID: mdl-33672559

ABSTRACT

(1) Background: This study was aimed at identifying the Colletotrichum species associated with twig and shoot dieback of citrus, a new syndrome occurring in the Mediterranean region and also reported as emerging in California. (2) Methods: Overall, 119 Colletotrichum isolates were characterized. They were recovered from symptomatic trees of sweet orange, mandarin and mandarin-like fruits during a survey of citrus groves in Albania and Sicily (southern Italy). (3) Results: The isolates were grouped into two distinct morphotypes. The grouping of isolates was supported by phylogenetic sequence analysis of two genetic markers, the internal transcribed spacer regions of rDNA (ITS) and ß-tubulin (TUB2). The groups were identified as Colletotrichum gloeosporioides and C. karstii, respectively. The former accounted for more than 91% of isolates, while the latter was retrieved only occasionally in Sicily. Both species induced symptoms on artificially wound inoculated twigs. C. gloeosporioides was more aggressive than of C. karstii. Winds and prolonged drought were the factor predisposing to Colletotrichum twig and shoot dieback. (4) Conclusions: This is the first report of C. gloeosporioides and C. karstii as causal agents of twig and shoot dieback disease in the Mediterranean region and the first report of C. gloeosporioides as a citrus pathogen in Albania.


Subject(s)
Citrus/microbiology , Colletotrichum/physiology , Plant Diseases/microbiology , Colletotrichum/growth & development , Colletotrichum/isolation & purification , DNA, Intergenic/genetics , Mycelium/physiology , Necrosis , Phylogeny , Plant Leaves/microbiology
8.
J Plant Physiol ; 260: 153390, 2021 May.
Article in English | MEDLINE | ID: mdl-33667937

ABSTRACT

To maximize breeding and exploitation of disease resistance traits for managing apple replant disease (ARD), it is of great importance to understand the mechanisms of apple root resistance. Currently, little is known about the functions of the specific genes that confer resistance traits in apple root. In this study, molecular, biochemical, and genetic approaches allowed an in-depth understanding of the role of the MdPR4 gene in the defense response of apple root. The MdPR4 encoding gene showed upregulation following ARD pathogen inoculation in our previous transcriptome data. Subcellular localization analyses revealed that MdPR4 is localized on the plasma membrane, endoplasmic reticulum, and apoplast, which is mainly determined by its signal peptide. Molecular docking analysis between MdPR4 protein with chitin molecule and in vitro MdPR4 chitin affinity assay proved its chitin-binding ability, which provided evidence for its role in chitin-mediated immune responses. Purified MdPR4 protein and MdPR4 overexpressed apple callus inhibited spore germination and mycelial growth of ARD-related Fusarium spp. pathogens. These data support the conclusion that MdPR4 is a chitin-binding protein in apple vegetative tissues that may play an important role in defense activation in response to ARD pathogen infection.


Subject(s)
Fusarium/physiology , Malus/immunology , Membrane Proteins/genetics , Plant Diseases/immunology , Plant Immunity/genetics , Plant Proteins/genetics , Chitin/metabolism , Fusarium/growth & development , Gene Expression Regulation, Plant/immunology , Malus/genetics , Membrane Proteins/immunology , Membrane Proteins/metabolism , Molecular Docking Simulation , Mycelium/growth & development , Mycelium/physiology , Plant Diseases/microbiology , Plant Proteins/immunology , Plant Proteins/metabolism , Spores, Fungal/growth & development
9.
Microbiol Res ; 243: 126650, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33302220

ABSTRACT

Given the current trend towards reducing the use of chemical controls in agriculture, microbial resources such as plant endophytes are being intensively investigated for traits that are conducive to plant protection. Among the various important target pathogens, Fusarium graminearum is a fungal pathogen of cereal crops that is responsible for severe yield losses and mycotoxin contamination in grains. In the present study, we investigated the bacterial endophytic communities from vetiver (Chrysopogon zizanioides (L.) Roberty) roots originating from 5 different geographic locations across Europe and Africa. This study relies on a global 16S metabarcoding approach and the isolation/functional characterization of bacterial isolates. The results we obtained showed that geographical location is a factor that influences the composition and relative abundance of root endophyte communities in vetiver. Three hundred eighty-one bacterial endophytes were isolated and assessed for their in vitro antagonistic activities towards F. graminearum mycelium growth. In total, 46 % of the isolates showed at least 50 % inhibitory activity against F. graminearum. The taxonomic identification of the bioactive isolates revealed that the composition of these functional culturable endophytic communities was influenced by the geographic origins of the roots. The selected communities consisted of 15 genera. Some endophytes in Bacillus, Janthinobacterium, Kosakonia, Microbacterium, Pseudomonas, and Serratia showed strong growth inhibition activity (≥70 %) against F. graminearum and could be candidates for further development as biocontrol agents.


Subject(s)
Bacteria/isolation & purification , Chrysopogon/microbiology , Endophytes/isolation & purification , Fusarium/growth & development , Microbiota , Plant Diseases/microbiology , Antibiosis , Bacteria/classification , Bacteria/genetics , Bacterial Physiological Phenomena , Endophytes/classification , Endophytes/genetics , Endophytes/physiology , Fusarium/physiology , Mycelium/growth & development , Mycelium/physiology , Phylogeny , Plant Roots/microbiology
10.
Int Microbiol ; 24(1): 25-35, 2021 Jan.
Article in English | MEDLINE | ID: mdl-32691258

ABSTRACT

PURPOSE: Sporothrix schenckii is a thermally dimorphic fungus. In a saprotrophic environment or culturing at 25 °C, it grows as mycelia, whereas in host tissues or culturing at 37 °C, it undergoes dimorphic transition and division into pathogenic yeast cells. S. schenckii can cause serious disseminated sporotrichosis in immunocompromised hosts and presents an emerging global health problem. The mycelium-to-yeast transition was a consequence of the adaptive process to different environment. Some studies showed that the transition was significantly related to the virulence and pathogenesis of dimorphic fungi. However the genetic mechanisms of this complicated biological process are poorly understood. METHOD: Our study presented a comparative transcriptomic analysis perspective on temperature stress in a visceral isolates of S. schenckii, obtaining more genetic information related to dimorphic transition. RESULTS: The 9.38 Gbp dataset was generated and assembled into 14,423 unigenes. Compared with gene and protein databases, 9561 unigenes were annotated. Comparative analysis identified 1259 genes expressed differentially in mycelium and yeast phase, and were categorized into a number of important biological processes, such as synthesis and metabolism, transmembrane transport, biocatalysis, oxidation reduction, and cellular signal transduction. CONCLUSIONS: The findings suggested that temperature-dependent transition was tightly associated with stress adaptation, growth and development, signal regulation, adhesion, and colonization, which was predicted to be related with virulence and pathogenesis. Collection of these data should offer fine-scale insights into the mechanisms of dimorphism and pathogenesis of S. schenckii, and meanwhile facilitate the evolutionary and function studies of other dimorphic fungi.


Subject(s)
Fungal Proteins/genetics , Sporothrix/growth & development , Sporothrix/genetics , Sporotrichosis/microbiology , Animals , Fungal Proteins/metabolism , Gene Expression Profiling , Gene Expression Regulation, Developmental , Gene Expression Regulation, Fungal , Humans , Mycelium/genetics , Mycelium/growth & development , Mycelium/physiology , Sporothrix/physiology , Stress, Physiological , Temperature , Transcription, Genetic
11.
Food Chem ; 336: 127672, 2021 Jan 30.
Article in English | MEDLINE | ID: mdl-32771899

ABSTRACT

Endophytic bacteria are always related to the host different traits, including the secondary metabolites production. However, the effect and mechanism of endophytic bacteria in the mushrooms fruit body on mycelia are still not clear. In this study, we investigated the effect of endophytic bacterial metabolites on the quality of Lyophyllum decastes mycelia. Soluble sugars, starch, protein, free amino acids, 5'-Nucleotides, EUC, and organic acids contents of mycelia were analyzed. We found that endophytic bacterial metabolites significantly increased the contents of soluble sugars, starch, protein, free amino acids, organic acids, and EUC. The present study thus suggests that endophytic bacteria could promote the quality of Lyophyllum decastes by improving non-volatile taste components of mycelia.


Subject(s)
Agaricales/chemistry , Bacteria/metabolism , Endophytes/physiology , Mycelium/chemistry , Taste , Agaricales/physiology , Amino Acids/analysis , Bacteria/isolation & purification , Food Microbiology , Food Quality , Fungal Proteins/analysis , Mycelium/physiology , Nucleotides/analysis , Volatile Organic Compounds
12.
Commun Biol ; 3(1): 334, 2020 06 26.
Article in English | MEDLINE | ID: mdl-32591629

ABSTRACT

Fungal mycelium is an emerging bio-based material. Here, mycelium films are produced from liquid shaken cultures that have a Young's modulus of 0.47 GPa, an ultimate tensile strength of 5.0 MPa and a strain at failure of 1.5%. Treating the mycelial films with 0-32% glycerol impacts the material properties. The largest effect is observed after treatment with 32% glycerol decreasing the Young's modulus and the ultimate tensile strength to 0.003 GPa and 1.8 MPa, respectively, whereas strain at failure increases to 29.6%. Moreover, glycerol treatment makes the surface of mycelium films hydrophilic and the hyphal matrix absorbing less water. Results show that mycelium films treated with 8% and 16-32% glycerol classify as polymer- and elastomer-like materials, respectively, while non-treated films and films treated with 1-4% glycerol classify as natural material. Thus, mycelium materials can cover a diversity of material families.


Subject(s)
Glycerol/pharmacology , Mycelium/classification , Biocompatible Materials , Biofilms/classification , Biofilms/drug effects , Biomass , Microscopy , Microscopy, Electron, Scanning , Mycelium/drug effects , Mycelium/physiology , Mycelium/ultrastructure , Schizophyllum/drug effects , Schizophyllum/growth & development , Tensile Strength/drug effects , Water/metabolism
13.
Fungal Biol ; 124(6): 551-561, 2020 06.
Article in English | MEDLINE | ID: mdl-32448446

ABSTRACT

Hypsizygus marmoreus is an important commercial edible fungus, but the lack of basic studies on this fungus has hindered further development of its commercial value. In this study, we found that the treatment of damaged vegetative mycelia with 1 mM l-ascorbic acid (ASA) significantly increased the antioxidant enzyme activities (GPX, GR, CAT and SOD) and antioxidant contents (GSH and ASA) and reduced the ROS levels (H2O2 and O2-) in mechanically damaged mycelia. Additionally, this treatment increased mycelial biomass. At the reproductive stage, our results demonstrated that the treatment of damaged H. marmoreus mycelia with 2.24 mM ASA significantly increased the antioxidant enzyme activities (GPX, GR, GST, TRXR and CAT), endogenous ASA contents and GSH/GSSG ratios in different developmental stages and significantly decreased the MDA and H2O2 contents. Furthermore, this study showed that the expression levels of the antioxidant enzyme genes were consistent with the enzyme activities. Damaged mycelia treated with ASA regenerated 2-3 d earlier than the control group and showed significantly enhanced fruiting body production. These results suggested that exogenous ASA regulated mycelia intracellular ASA content to increase mycelial antioxidant abilities, induce the regeneration of damaged mycelia and regulate the development of fruiting bodies in H. marmoreus.


Subject(s)
Agaricales/drug effects , Agaricales/physiology , Antioxidants/metabolism , Ascorbic Acid/pharmacology , Fruiting Bodies, Fungal/growth & development , Mycelium/physiology , Agaricales/growth & development , Mycelium/drug effects , Oxidative Stress/drug effects , Oxidoreductases/genetics , Oxidoreductases/metabolism , Reactive Oxygen Species/metabolism , Regeneration
14.
Microbes Environ ; 35(2)2020.
Article in English | MEDLINE | ID: mdl-32295978

ABSTRACT

Bacterial endosymbionts inhabit diverse fungal lineages. Although the number of studies on bacteria is increasing, the mechanisms by which bacteria affect their fungal hosts remain unclear. We herein examined the homothallic isolate, Mortierella sugadairana YTM39, harboring a Burkholderiaceae-related endobacterium, which did not produce sexual spores. We successfully eliminated the bacterium from fungal isolates using ciprofloxacin treatment and asexual spore isolation for germinated asexual spores. Sexual spore formation by the fungus was restored by eliminating the bacterium from isolates. These results indicate that sexual reproduction by the fungus was inhibited by the bacterium. This is the first study on the sexual spore infertility of fungal hosts by endofungal bacteria.


Subject(s)
Burkholderiaceae/physiology , Mortierella/physiology , Biological Evolution , Burkholderiaceae/drug effects , Ciprofloxacin/pharmacology , Mycelium/physiology , Reproduction , Spores, Fungal/physiology , Symbiosis
15.
Lett Appl Microbiol ; 71(2): 154-163, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32255198

ABSTRACT

Cowpea is an important pulse crop cultivated in arid and semi-arid regions of the world. During field survey, a characteristic wilt was observed in around 45 ha of cowpea fields with incidence 17-25%. Infection was seen in pre-flowering stage and infected plants showed quick wilt symptoms with tan lesions near the stem-soil interface. Fungal pathogens associated were isolated on PDA, which produced dark to grey olivaceous colonies in the centre, and aerial mycelia were appressed with floccose and white to smoke-grey. Conidia are aseptate, initially hyaline, smooth-walled, broadly ellipsoidal with rounded ends becoming dark brown. Based on these morphological features, the fungal pathogen was identified as Aplosporella sp. The ITS-rDNA region was amplified using ITS1/ITS4 primers and sequenced. The nBLAST and phylogenetic analysis confirmed the pathogen as Aplosporella hesperidica. The Koch's postulates were performed on 45-days-old cowpea plants with mycelial disc of A. hesperidica. Development of typical necrotic lesions was observed after 28 days of post-inoculation and the pathogen's identity was confirmed based on re-isolation. Efficacy of fungicides evaluated in vitro showed that the pathogen is highly sensitive to systemic fungicides rather than the contact fungicides. The cowpea production was severely affected owing to the causative agent A. hesperidica. The collar rot disease of cowpea by A. hesperidica is the first report in India. SIGNIFICANCE AND IMPACT OF THE STUDY: A new collar rot disease of cowpea recorded from India has been investigated. The necrotic lesions were enlarged and eventually quick wilt and death of the host plant was observed with incidence ranged from 17 to 25%. Associated fungal pathogen was isolated and identified as Aplosporella hesperidica based on morphology and ITS-rDNA sequence analysis. Koch's postulates were performed under greenhouse conditions and in vitro evaluation of fungicides shows that the pathogen is sensitive to systemic fungicides. This is the first report of A. hesperidica causing collar rot disease of cowpea in India.


Subject(s)
Ascomycota/drug effects , Ascomycota/genetics , Fungicides, Industrial/pharmacology , Plant Diseases/microbiology , Vigna/microbiology , Ascomycota/classification , Ascomycota/growth & development , DNA, Ribosomal/genetics , India , Microbial Sensitivity Tests , Mycelium/physiology , Phylogeny , Spores, Fungal/physiology
16.
PLoS One ; 15(3): e0230330, 2020.
Article in English | MEDLINE | ID: mdl-32176731

ABSTRACT

Banana (Musa sp.) is cultivated worldwide and is one of the most popular fruits. The soil-borne fungal disease Fusarium wilt of banana (FWB), commonly known as Panama disease, is caused by Fusarium oxysporum f. sp. cubense (Foc) and is a highly lethal vascular fungal disease in banana plants. Raman spectroscopy, an emerging laser-based technology based on Raman scattering, has been used for the qualitative characterization of biological tissues such as foodborne pathogens, cancer cells, and melamine. In this study, we describe a Raman spectroscopic technique that could potentially be used as a method for diagnosing FWB. To that end, the Raman fingerprints of Foc (including mycelia and conidia) and Foc-infected banana pseudostems with varying levels of symptoms were determined. Our results showed that eight, eleven, and eleven characteristic surface-enhanced Raman spectroscopy peaks were observed in the mycelia, microconidia, and macroconidia of Foc, respectively. In addition, we constructed the Raman spectroscopic fingerprints of banana pseudostem samples with varying levels of symptoms in order to be able to differentiate Foc-infected bananas from healthy bananas. The rate at which FWB was detected in asymptomatic Foc-infected samples by using the spectral method was 76.2%, which was comparable to the rates previously reported for other FWB detection methods based on real-time PCR assays, suggesting that the spectral method described herein could potentially serve as an alternative tool for detecting FWB in fields. As such, we hope that the developed spectral method will open up new possibilities for the on-site diagnosis of FWB.


Subject(s)
Fusarium/isolation & purification , Musa/microbiology , Plant Diseases/microbiology , Spectrum Analysis, Raman , Fusarium/genetics , Mycelium/physiology
17.
Appl Microbiol Biotechnol ; 104(6): 2469-2479, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31993704

ABSTRACT

Extreme environments, for example high-salt-stress condition, that can induce secondary metabolite biosynthesis in fungi are a promising and effective strategy for producing natural Monascus pigments used as food colourants and nutraceutical supplements. In this study, the relationship between the mycelial morphology and expression of pigment biosynthetic genes in high-salt-stress fermentation (HSF) with Monascus ruber CGMCC 10910 was investigated. The Monascus fungus grew well under HSF conditions with 35 g/l NaCl, and the intracellular yellow pigment yield in HSF was 40% higher than that in conventional batch fermentation (CBF). Moreover, the mycelial morphology was maintained in a better state, with a hyphal diameter of 5-6 µm in HSF, indicating good biocatalytic activity for pigment synthesis. The rate of the relative content of intracellular orange pigments to yellow pigments (O/Y) significantly (p < 0.05) changed, and the extracellular yellow pigments were transformed into each other, indicating that the pigment biosynthesis pathway was changed to promote yellow pigment accumulation in HSF. The pigment biosynthesis genes MpPKS5, MpFasB2, mppE, mppD and mppB were significantly (p < 0.05) up-regulated by approximately 58.4-106.1%, whereas the regulatory genes mppR1 and mppR2 were significantly (p < 0.05) down-regulated by approximately 23.2% and 59.0% in HSF. Notably, the mppE gene was highly correlated with (r > 0.95, p < 0.05) hyphal diameter. These findings indicated that the cultivation of the Monascus fungus under high-salt-stress conditions was beneficial for pigment biosynthesis by controlling the mycelial morphology to regulate gene expression. This study first described the relationship between the mycelial morphology and expression of pigment biosynthetic genes in Monascus during fermentation. KEY POINTS: • High-salt-stress fermentation (HSF) was first performed to improve Monascus pigment yield. • Pigment biosynthesis was enhanced by maintaining the mycelial morphology in an improved state in HSF. • Gene expression was up-/downregulated to promote yellow pigment accumulation in HSF. • The mycelial morphology was highly related to the expression of pigment biosynthetic genes in HSF.


Subject(s)
Fermentation , Fungal Proteins/genetics , Monascus/genetics , Pigments, Biological/biosynthesis , Salts/chemistry , Gene Expression , Monascus/physiology , Mycelium/genetics , Mycelium/physiology , Secondary Metabolism , Stress, Physiological
18.
ISME J ; 14(4): 896-905, 2020 04.
Article in English | MEDLINE | ID: mdl-31896790

ABSTRACT

Filamentous fungi play a key role as decomposers in Earth's nutrient cycles. In soils, substrates are heterogeneously distributed in microenvironments. Hence, individual hyphae of a mycelium may experience very different environmental conditions simultaneously. In the current work, we investigated how fungi cope with local environmental variations at single-cell level. We developed a method based on infrared spectroscopy that allows the direct, in-situ chemical imaging of the decomposition activity of individual hyphal tips. Colonies of the ectomycorrhizal Basidiomycete Paxillus involutus were grown on liquid media, while parts of colonies were allowed to colonize lignin patches. Oxidative decomposition of lignin by individual hyphae growing under different conditions was followed for a period of seven days. We identified two sub-populations of hyphal tips: one with low decomposition activity and one with much higher activity. Active cells secreted more extracellular polymeric substances and oxidized lignin more strongly. The ratio of active to inactive hyphae strongly depended on the environmental conditions in lignin patches, but was further mediated by the decomposition activity of entire mycelia. Phenotypic heterogeneity occurring between genetically identical hyphal tips may be an important strategy for filamentous fungi to cope with heterogeneous and constantly changing soil environments.


Subject(s)
Fungi/physiology , Agaricales , Basidiomycota/physiology , Environmental Microbiology , Hyphae , Mycelium/physiology , Mycorrhizae/physiology , Nutrients , Soil/chemistry
19.
Microb Ecol ; 79(1): 73-83, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31236611

ABSTRACT

Intraguild predation (IGP) is a widespread interaction combining predation and competition. We investigated a unique IGP example among predacious fungus Zoophagus sp. and two rotifers, the predacious Cephalodella gibba and the common prey Lecane inermis. We checked the influence of the fungus on its competitor C. gibba and their joint influence on shared prey L. inermis, and the impact of the competitive predator on the growth of predacious fungus. The experiment on grown mycelium showed that Zoophagus strongly, negatively influences the growth of C. gibba (intermediate consumer) whose number did not increase throughout the experiment. The intermediate consumer was also trapped by Zoophagus and become extinct when it was its only prey, whereas in the absence of the fungus and with unlimited access to prey, its number grew quickly. As only few C. gibba were trapped by fungi when common preys were present, competition for food seems to have stronger effect on intermediate consumer population than predation. The experiment with conidia of the fungus showed that intermediate consumer significantly limits the growth of Zoophagus by reducing the number of available prey. It was observed that although the fungus can trap C. gibba, the latter does not support its growth. Trapping the intermediate consumer might serve to eliminate a competitor rather than to find a source of food. The chances of survival for L. inermis under the pressure of the two competing predators are scarce. It is the first example of IGP involving representatives of two kingdoms: Fungi and Animalia.


Subject(s)
Fungi/physiology , Rotifera/physiology , Animals , Ecosystem , Feeding Behavior , Food Chain , Fungi/growth & development , Mycelium/growth & development , Mycelium/physiology , Predatory Behavior , Spores, Fungal/growth & development , Spores, Fungal/physiology
20.
PLoS One ; 14(8): e0221037, 2019.
Article in English | MEDLINE | ID: mdl-31393956

ABSTRACT

We proposed a theoretical framework predicting mutualistic outcomes for the arbuscular mycorrhizal (AM) symbiosis based on host provenance (crop versus wild). To test the framework, we grew two isolates of Rhizoglomus irregulare (commercial versus an isolate locally isolated), with five crop plants and five wild plants endemic to the region that co-occur with the locally sourced fungus. While inoculation with either isolate had no effect on plant biomass, it decreased leaf P content, particularly for wild plants. All plants associating with the commercial fungus had lower leaf P. Overall, our data shows that wild plants may be more sensitive to differences in mutualistic quality among fungal isolates.


Subject(s)
Crops, Agricultural/microbiology , Mycorrhizae/physiology , Biomass , Glomeromycota/physiology , Mycelium/physiology , Plant Shoots/microbiology , Spores, Fungal/physiology
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