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1.
Proc Natl Acad Sci U S A ; 120(30): e2219897120, 2023 07 25.
Article in English | MEDLINE | ID: mdl-37459550

ABSTRACT

The human microbiota affects critical cellular functions, although the responsible mechanism(s) is still poorly understood. In this regard, we previously showed that Mycoplasma fermentans DnaK, an HSP70 chaperone protein, hampers the activity of important cellular proteins responsible for DNA integrity. Here, we describe a novel DnaK knock-in mouse model generated in our laboratory to study the effect of M. fermentans DnaK expression in vivo. By using an array-based comparative genomic hybridization assay, we demonstrate that exposure to DnaK was associated with a higher number of DNA copy number variants (CNVs) indicative of unbalanced chromosomal alterations, together with reduced fertility and a high rate of fetal abnormalities. Consistent with their implication in genetic disorders, one of these CNVs caused a homozygous Grid2 deletion, resulting in an aberrant ataxic phenotype that recapitulates the extensive biallelic deletion in the Grid2 gene classified in humans as autosomal recessive spinocerebellar ataxia 18. Our data highlight a connection between components of the human urogenital tract microbiota, namely Mycoplasmas, and genetic abnormalities in the form of DNA CNVs, with obvious relevant medical, diagnostic, and therapeutic implications.


Subject(s)
DNA Copy Number Variations , Mycoplasma Infections , Mycoplasma fermentans/genetics , Homozygote , Mycoplasma Infections/genetics , Mycoplasma Infections/metabolism , Animals , Mice , Mice, Inbred C57BL
2.
Clin Microbiol Infect ; 27(11): 1697.e1-1697.e5, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34186210

ABSTRACT

OBJECTIVES: To determine the presence and genotypic macrolide susceptibility of Mycoplasma amphoriforme, and the presence of Ureaplasma spp. and Mycoplasma fermentans among clinical samples from England previously investigated for Mycoplasma pneumoniae. METHODS: Quantitative and conventional PCR methods were used to retrospectively screen a collection of 160 clinical samples previously submitted to Public Health England (PHE) for the detection of M. pneumoniae between October 2016 and December 2017. Samples which were positive for M. amphoriforme DNA were further investigated for mutations associated with genotypic macrolide resistance by sequencing domain V of the 23s rRNA. RESULTS: M. amphoriforme was detected in 10/160 samples (6.3%), Ureaplasma parvum was detected in 4/160 samples (2.5%), and M. fermentans was not detected in any samples (0/160). Of the nine individuals (two samples were from the same patient) in which M. amphoriforme was detected, eight were male (age range 10-60 years) and one was female (age range 30-40 years). One individual with cystic fibrosis was positive for both M. amphoriforme and U. parvum. All M. amphoriforme DNA was genotypically susceptible to macrolides. CONCLUSIONS: Mycoplasma amphoriforme was found in clinical samples, including lower respiratory tract samples of patients with pneumonia. In the absence of other respiratory pathogens, these data suggest a potential role for this organism in human disease, with no evidence of acquired macrolide resistance. Ureaplasma parvum was detected in cerebrospinal fluid and respiratory tract samples. These data suggest that there is a need to consider these atypical respiratory pathogens in future diagnostic investigations.


Subject(s)
Mycoplasma Infections , Mycoplasma fermentans , Mycoplasma/isolation & purification , Ureaplasma/isolation & purification , Adolescent , Adult , Anti-Bacterial Agents/pharmacology , Child , Drug Resistance, Bacterial/genetics , Female , Humans , Macrolides/pharmacology , Male , Middle Aged , Mycoplasma/drug effects , Mycoplasma/genetics , Mycoplasma Infections/epidemiology , Mycoplasma fermentans/drug effects , Mycoplasma fermentans/genetics , Mycoplasma fermentans/isolation & purification , Retrospective Studies , Ureaplasma/drug effects , Ureaplasma/genetics , Young Adult
3.
Int J Mol Sci ; 22(8)2021 Apr 09.
Article in English | MEDLINE | ID: mdl-33918708

ABSTRACT

Several species of mycoplasmas, including Mycoplasma fermentans, are associated with certain human cancers. We previously isolated and characterized in our laboratory a strain of human mycoplasma M. fermentans subtype incognitus (MF-I1) able to induce lymphoma in a Severe Combined Immuno-Deficient (SCID) mouse model, and we demonstrated that its chaperone protein, DnaK, binds and reduces functions of human poly-ADP ribose polymerase-1 (PARP1) and ubiquitin carboxyl-terminal hydrolase protein-10 (USP10), which are required for efficient DNA repair and proper p53 activities, respectively. We also showed that other bacteria associated with human cancers (including Mycoplasmapneumoniae, Helicobacterpylori, Fusobacteriumnucleatum, Chlamydiathrachomatis, and Chlamydia pneumoniae) have closely related DnaK proteins, indicating a potential common mechanism of cellular transformation. Here, we quantify dnaK mRNA copy number by RT-qPCR analysis in different cellular compartments following intracellular MF-I1 infection of HCT116 human colon carcinoma cells. DnaK protein expression in infected cells was also detected and quantified by Western blot. The amount of viable intracellular mycoplasma reached a steady state after an initial phase of growth and was mostly localized in the cytoplasm of the invaded cells, while we detected a logarithmically increased number of viable extracellular bacteria. Our data indicate that, after invasion, MF-I1 is able to establish a chronic intracellular infection. Extracellular replication was more efficient while MF-I1 cultured in cell-free axenic medium showed a markedly reduced growth rate. We also identified modifications of important regulatory regions and heterogeneous lengths of dnaK mRNA transcripts isolated from intracellular and extracellular MF-I1. Both characteristics were less evident in dnaK mRNA transcripts isolated from MF-I1 grown in cell-free axenic media. Taken together, our data indicate that MF-I1, after establishing a chronic infection in eukaryotic cells, accumulates different forms of dnaK with efficient RNA turnover.


Subject(s)
Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , HSP70 Heat-Shock Proteins/genetics , Mycoplasma fermentans/genetics , Cells, Cultured , HCT116 Cells , Humans , Mutation , Mycoplasma Infections/microbiology
4.
Proc Natl Acad Sci U S A ; 115(51): E12005-E12014, 2018 12 18.
Article in English | MEDLINE | ID: mdl-30509983

ABSTRACT

We isolated a strain of human mycoplasma that promotes lymphomagenesis in SCID mice, pointing to a p53-dependent mechanism similar to lymphomagenesis in uninfected p53-/- SCID mice. Additionally, mycoplasma infection in vitro reduces p53 activity. Immunoprecipitation of p53 in mycoplasma-infected cells identified several mycoplasma proteins, including DnaK, a member of the Hsp70 chaperon family. We focused on DnaK because of its ability to interact with proteins. We demonstrate that mycoplasma DnaK interacts with and reduces the activities of human proteins involved in critical cellular pathways, including DNA-PK and PARP1, which are required for efficient DNA repair, and binds to USP10 (a key p53 regulator), impairing p53-dependent anticancer functions. This also reduced the efficacy of anticancer drugs that depend on p53 to exert their effect. mycoplasma was detected early in the infected mice, but only low copy numbers of mycoplasma DnaK DNA sequences were found in some primary and secondary tumors, pointing toward a hit-and-run/hide mechanism of transformation. Uninfected bystander cells took up exogenous DnaK, suggesting a possible paracrine function in promoting malignant transformation, over and above cells infected with the mycoplasma. Phylogenetic amino acid analysis shows that other bacteria associated with human cancers have similar DnaKs, consistent with a common mechanism of cellular transformation mediated through disruption of DNA-repair mechanisms, as well as p53 dysregulation, that also results in cancer-drug resistance. This suggests that the oncogenic properties of certain bacteria are DnaK-mediated.


Subject(s)
Adenosine Triphosphatases/genetics , Bacterial Proteins/genetics , Carcinogenesis/genetics , Cell Transformation, Neoplastic/genetics , Molecular Chaperones/genetics , Mycoplasma/genetics , Adenosine Triphosphatases/classification , Animals , Antineoplastic Agents/therapeutic use , Bacterial Proteins/classification , Cell Transformation, Neoplastic/drug effects , Cell Transformation, Neoplastic/metabolism , DNA Repair , DNA, Bacterial/genetics , DNA-Activated Protein Kinase/metabolism , Disease Models, Animal , Genes, Bacterial/genetics , HCT116 Cells , HSP70 Heat-Shock Proteins/metabolism , Humans , Lymphoma/genetics , Lymphoma/microbiology , Lymphoma/pathology , Mice , Mice, SCID , Molecular Chaperones/classification , Mycoplasma/pathogenicity , Mycoplasma Infections/microbiology , Mycoplasma fermentans/genetics , Mycoplasma fermentans/pathogenicity , Oncogenes , Phylogeny , Poly (ADP-Ribose) Polymerase-1/metabolism , Sequence Analysis , Sequence Analysis, Protein , Tumor Suppressor Protein p53/metabolism , Ubiquitin Thiolesterase/metabolism
5.
Epidemiol Infect ; 143(15): 3327-34, 2015 Nov.
Article in English | MEDLINE | ID: mdl-25792346

ABSTRACT

Mycoplasma infections are most frequently associated with disease in the urogenital or respiratory tracts and, in most cases, mycoplasmas infect the host persistently. In HIV-infected individuals the prevalence and role of genital mycoplasmas has not been well studied. To investigate the six species of Mycoplasma and the risk factors for infection in Jiangsu province, first-void urine and venous blood samples were collected and epidemiological questionnaires were administered after informed consent. A total of 1541 HIV/AIDS patients were recruited in this study. The overall infection rates of six Mycoplasma species were: Ureaplasma urealyticum (26·7%), Mycoplasma hominis (25·3%), M. fermentans (5·1%), M. genitalium (20·1%), M. penetrans (1·6%) and M. pirum (15·4%). The Mycoplasma infection rate in the unmarried group was lower than that of the married, divorced and widowed groups [adjusted odds ratio (aOR) 1·432, 95% confidence interval (CI) 1·077-1·904, P < 0·05]. The patients who refused highly active antiretroviral therapy (HAART) had a much higher risk of Mucoplasma infection (aOR 1·357, 95% CI 1·097-1·679, P < 0·05). Otherwise, a high CD4+ T cell count was a protective factor against Mycoplasma infection (aOR 0·576, 95% CI 0·460-0·719, P < 0·05). Further research will be required to confirm a causal relationship and to identify risk factors for Mycoplasma infection in HIV/AIDS populations.


Subject(s)
Antiretroviral Therapy, Highly Active/statistics & numerical data , HIV Infections/epidemiology , Marital Status/statistics & numerical data , Mycoplasma Infections/epidemiology , Ureaplasma Infections/epidemiology , Adolescent , Adult , Aged , China/epidemiology , Coinfection/epidemiology , Cross-Sectional Studies , HIV Infections/drug therapy , HIV-1 , Humans , Male , Middle Aged , Mycoplasma/genetics , Mycoplasma/isolation & purification , Mycoplasma Infections/microbiology , Mycoplasma fermentans/genetics , Mycoplasma fermentans/isolation & purification , Mycoplasma genitalium/genetics , Mycoplasma genitalium/isolation & purification , Mycoplasma hominis/genetics , Mycoplasma hominis/isolation & purification , Mycoplasma penetrans/genetics , Mycoplasma penetrans/isolation & purification , Polymerase Chain Reaction , Prevalence , Risk Factors , Ureaplasma urealyticum/genetics , Ureaplasma urealyticum/isolation & purification , Young Adult
6.
Biotechnol Prog ; 31(3): 730-5, 2015.
Article in English | MEDLINE | ID: mdl-25644129

ABSTRACT

Peptide nucleic acid (PNA) is an artificially synthesized polymer. PNA oligomers show greater specificity in binding to complementary DNAs. Using this PNA, fluorescence melting curve analysis (FMCA) for dual detection was established. Genomic DNA of Mycoplasma fermentans and Mycoplasma hyorhinis was used as a template DNA model. By using one PNA probe, M. fermentans and M. hyorhinis could be detected and distinguished simultaneously in a single tube. The developed PNA probe is a dual-labeled probe with fluorescence and quencher dye. The PNA probe perfectly matches the M. fermentans 16s rRNA gene, with a melting temperature of 72°C. On the other hand, the developed PNA probe resulted in a mismatch with the 16s rRNA gene of M. hyorhinis, with a melting temperature of 44-45°C. The melting temperature of M. hyorhinis was 27-28°C lower than that of M. fermentans. Due to PNA's high specificity, this larger melting temperature gap is easy to create. FMCA using PNA offers an alternative method for specific DNA detection.


Subject(s)
DNA, Bacterial/isolation & purification , Peptide Nucleic Acids/chemistry , DNA Probes/chemistry , DNA, Bacterial/chemistry , Genomics , Mycoplasma fermentans/genetics , Mycoplasma hyorhinis/genetics , RNA, Ribosomal, 16S/chemistry , Sequence Analysis, DNA , Temperature
8.
PLoS One ; 7(4): e32940, 2012.
Article in English | MEDLINE | ID: mdl-22509252

ABSTRACT

Recently, the genomes of two Mycoplasma fermentans strains, namely M64 and JER, have been completely sequenced. Gross comparison indicated that the genome of M64 is significantly bigger than the other strain and the difference is mainly contributed by the repetitive sequences including seven families of simple and complex transposable elements ranging from 973 to 23,778 bps. Analysis of these repeats resulted in the identification of a new distinct family of Integrative Conjugal Elements of M. fermentans, designated as ICEF-III. Using the concept of "reaction connectivity", the metabolic capabilities in M. fermentans manifested by the complete and partial connected biomodules were revealed. A comparison of the reported M. pulmonis, M. arthritidis, M. genitalium, B. subtilis, and E. coli essential genes and the genes predicted from the M64 genome indicated that more than 73% of the Mycoplasmas essential genes are preserved in M. fermentans. Further examination of the highly and partly connected reactions by a novel combinatorial phylogenetic tree, metabolic network, and essential gene analysis indicated that some of the pathways (e.g. purine and pyrimidine metabolisms) with partial connected reactions may be important for the conversions of intermediate metabolites. Taken together, in light of systems and network analyses, the diversity among the Mycoplasma species was manifested on the variations of their limited metabolic abilities during evolution.


Subject(s)
Biodiversity , Genome, Bacterial/genetics , Mycoplasma fermentans/genetics , Mycoplasma fermentans/metabolism , Base Sequence , Conserved Sequence , DNA Transposable Elements/genetics , DNA, Bacterial/genetics , Evolution, Molecular , Genes, Bacterial/genetics , Metabolic Networks and Pathways/genetics , Molecular Sequence Data , Phylogeny , Species Specificity
9.
PLoS One ; 7(4): e35304, 2012.
Article in English | MEDLINE | ID: mdl-22536369

ABSTRACT

Mycoplasma fermentans is a potent human pathogen which has been implicated in several diseases. Notably, its lipid-associated membrane proteins (LAMPs) play a role in immunomodulation and development of infection-associated inflammatory diseases. However, the systematic protein identification of pathogenic M. fermentans has not been reported. From our recent sequencing results of M. fermentans M64 isolated from human respiratory tract, its genome is around 1.1 Mb and encodes 1050 predicted protein-coding genes. In the present study, soluble proteome of M. fermentans was resolved and analyzed using two-dimensional gel electrophoresis. In addition, Triton X-114 extraction was carried out to enrich amphiphilic proteins including putative lipoproteins and membrane proteins. Subsequent mass spectrometric analyses of these proteins had identified a total of 181 M. fermentans ORFs. Further bioinformatics analysis of these ORFs encoding proteins with known or so far unknown orthologues among bacteria revealed that a total of 131 proteins are homologous to known proteins, 11 proteins are conserved hypothetical proteins, and the remaining 39 proteins are likely M. fermentans-specific proteins. Moreover, Triton X-114-enriched fraction was shown to activate NF-kB activity of raw264.7 macrophage and a total of 21 lipoproteins with predicted signal peptide were identified therefrom. Together, our work provides the first proteome reference map of M. fermentans as well as several putative virulence-associated proteins as diagnostic markers or vaccine candidates for further functional study of this human pathogen.


Subject(s)
Bacterial Proteins/metabolism , Lipid-Linked Proteins/metabolism , Mycoplasma fermentans/metabolism , Proteome/metabolism , Virulence Factors/metabolism , Amino Acid Sequence , Animals , Bacterial Proteins/genetics , Bacterial Proteins/immunology , Cell Line , Electrophoresis, Gel, Two-Dimensional , Genome, Bacterial , Glycolysis/genetics , Humans , Lipid-Linked Proteins/genetics , Lipid-Linked Proteins/immunology , Macrophages/immunology , Macrophages/metabolism , Mice , Molecular Sequence Annotation , Molecular Sequence Data , Mycoplasma fermentans/genetics , NF-kappa B/metabolism , Open Reading Frames , Phylogeny , Protein Structure, Secondary , Proteome/genetics , Proteome/immunology , Proteomics , Sequence Homology, Amino Acid , Virulence Factors/genetics , Virulence Factors/immunology
10.
J Bacteriol ; 193(16): 4302-3, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21642450

ABSTRACT

Mycoplasma fermentans is a microorganism commonly found in the genitourinary and respiratory tracts of healthy individuals and AIDS patients. The complete genome of the repetitive-sequence-rich M. fermentans strain M64 is reported here. Comparative genomics analysis revealed dramatic differences in genome size between this strain and the recently completely sequenced JER strain.


Subject(s)
Mycoplasma fermentans/classification , Mycoplasma fermentans/genetics , Genome, Bacterial , Molecular Sequence Data
11.
Microbiology (Reading) ; 157(Pt 3): 760-773, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21109561

ABSTRACT

We present the complete genomic sequence of Mycoplasma fermentans, an organism suggested to be associated with the pathogenesis of rheumatoid arthritis in humans. The genome is composed of 977,524 bp and has a mean G+C content of 26.95 mol%. There are 835 predicted protein-coding sequences and a mean coding density of 87.6 %. Functions have been assigned to 58.8 % of the predicted protein-coding sequences, while 18.4 % of the proteins are conserved hypothetical proteins and 22.8 % are hypothetical proteins. In addition, there are two complete rRNA operons and 36 tRNA coding sequences. The largest gene families are the ABC transporter family (42 members), and the functionally heterogeneous group of lipoproteins (28 members), which encode the characteristic prokaryotic cysteine 'lipobox'. Protein secretion occurs through a pathway consisting of SecA, SecD, SecE, SecG, SecY and YidC. Some highly conserved eubacterial proteins, such as GroEL and GroES, are notably absent. The genes encoding DnaK-DnaJ-GrpE and Tig, forming the putative complex of chaperones, are intact, providing the only known control over protein folding. Eighteen nucleases and 17 proteases and peptidases were detected as well as three genes for the thioredoxin-thioreductase system. Overall, this study presents insights into the physiology of M. fermentans, and provides several examples of the genetic basis of systems that might function as virulence factors in this organism.


Subject(s)
Bacterial Proteins/genetics , Genome, Bacterial/genetics , Mycoplasma fermentans/physiology , Sequence Analysis, DNA , Virulence Factors/genetics , Base Composition , Chromosome Mapping , DNA, Bacterial/analysis , DNA, Bacterial/genetics , Genes, Bacterial , Humans , Molecular Sequence Data , Mycoplasma fermentans/genetics , Mycoplasma fermentans/pathogenicity , Sequence Alignment
12.
J Biosci Bioeng ; 109(4): 341-5, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20226374

ABSTRACT

A gene, mf3, encoding glycosyltransferase in glycoglycerophospholipid (GGPL; GGPL-I and GGPL-III) biosynthesis in Mycoplasma fermentans PG18 was identified by genomic analysis, cloned, modified codon usage, and expressed in Escherichia coli. The mf3 gene consists of an open reading frame of 1221 bp encoding 406 amino acids. The mf3 gene product, Mf3, has 27% amino acid homology with glycosyltransferase of Borrelia burgdorferi but no homology to genes of other Mycoplasma species in the GenBank database. The reaction product of Mf3 using 1,2-dipalmitoilglycerol and UDP-glucose as substrates showed a specific sodium adducted ion at m/z 753, which corresponded to glucopyranosyl dipalmitoilglycerol as determined by MALDI-TOF mass spectrometry. Furthermore, in the reaction product by Mf3 and Mf1 which was a cholinephosphotransferase and previously cloned from M. fermentans PG18, an ion at m/z 896 corresponding to GGPL-I was detected by mass spectrometry. The product ions of choline, phosphocholine, and hexose-bound phosphocholine were detected by tandem MS analysis of protonated molecules at m/z 896. From these results, mf3 was identified as a glycosyltransferase. It was suggested that glucose transfer and phosphocholine transfer to 1,2-dipalmitoylglycerol are involved in the GGPL biosynthesis pathway of M. fermentans PG18.


Subject(s)
Diglycerides/metabolism , Glycolipids/biosynthesis , Mycoplasma fermentans/genetics , Mycoplasma fermentans/metabolism , Base Sequence , DNA Primers/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , Genes, Bacterial , Glycolipids/chemistry , Glycosyltransferases/genetics , Glycosyltransferases/metabolism , Mycoplasma fermentans/enzymology , Phylogeny , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Substrate Specificity , Tandem Mass Spectrometry
13.
J Vet Med Sci ; 72(6): 805-8, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20134120

ABSTRACT

The information of the biosynthesis pathways of Mycoplasma fermentans specific major lipid-antigen, named glycoglycerophospholipids (GGPLs), is expected to be some of help to understand the virulence of M. fermentans. We examined primary structure of cholinephosphotransferase (mf1) and glucosyltransferase (mf3) genes, which engage GGPL-I and GGPL-III synthesis, in 20 strains, and found four types of variations in the mf1 gene but the mf3 gene in two strains was not detected by PCR. These results may have important implications in virulence factor of M. fermentans.


Subject(s)
Genetic Variation , Glycolipids/genetics , Mycoplasma fermentans/genetics , Amino Acid Sequence , Antigens, Bacterial/genetics , DNA Primers , Diacylglycerol Cholinephosphotransferase/genetics , Mycoplasma fermentans/enzymology , Mycoplasma fermentans/metabolism , Polymerase Chain Reaction
14.
BMC Musculoskelet Disord ; 10: 97, 2009 Aug 03.
Article in English | MEDLINE | ID: mdl-19650889

ABSTRACT

BACKGROUND: Increasing evidence incriminates bacteria, especially Mycoplasma fermentans, as possible arthritogenic agents in humans. The purpose of this study was to investigate M. fermentans in the bloodstream of patients with rheumatoid arthritis. METHODS: Two hundred and nineteen blood samples from patients with rheumatoid arthritis, systemic lupus erythematosus, antiphospholipid syndrome, and healthy individuals were screened by bacterial culture and direct PCR in order to detect mycoplasmas; IgM and IgG against M. fermentans PG18 were also detected by ELISA and Immunoblotting assays in patients with rheumatoid arthritis and healthy individuals. RESULTS: Blood samples from patients with antiphospholipid syndrome and healthy individuals were negative for mycoplasma by culture or direct PCR. In blood samples from patients with systemic lupus erythematosus were detected by direct PCR M. fermentans in 2/50 (2%), M. hominis in 2/50 (2%) and U. urealyticum in 1/50 (0.5%). In patients with RA M. fermentans was detected by culture in 13/87 blood samples and in 13/87 by direct PCR, however, there was only concordance between culture and direct PCR in six samples, so M. fermentans was detected in 20/87(23%) of the blood samples from patients with RA by either culture or PCR. Antibody-specific ELISA assay to M. fermentans PG18 was done, IgM was detected in sera from 40/87 patients with RA and in sera of 7/67 control individuals, IgG was detected in sera from 48/87 RA patients and in sera from 7/67 healthy individuals. Antibody-specific immunoblotting to M. fermentans PG18 showed IgM in sera from 35/87 patients with RA and in sera from 4/67 healthy individuals, IgG was detected in sera from 34/87 patients and in sera from 5/67 healthy individuals. CONCLUSION: Our findings show that only M. fermentans produce bacteremia in a high percentage of patients with RA. This finding is similar to those reported in the literature. IgM and IgG against M. fermentans PG18 were more frequent in patients with RA than healthy individuals.


Subject(s)
American Indian or Alaska Native , Antibodies, Bacterial/blood , Arthritis, Rheumatoid/microbiology , Immunoglobulin G/blood , Immunoglobulin M/blood , Mycoplasma fermentans/immunology , Adult , Aged , Antiphospholipid Syndrome/ethnology , Antiphospholipid Syndrome/microbiology , Arthritis, Rheumatoid/drug therapy , Arthritis, Rheumatoid/ethnology , Case-Control Studies , DNA, Bacterial/blood , Enzyme-Linked Immunosorbent Assay , Humans , Lupus Erythematosus, Systemic/ethnology , Lupus Erythematosus, Systemic/microbiology , Mexico , Middle Aged , Mycoplasma fermentans/genetics , Mycoplasma fermentans/isolation & purification , Mycoplasma hominis/immunology , Polymerase Chain Reaction , Ureaplasma urealyticum/immunology
15.
J Appl Microbiol ; 107(2): 498-505, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19302296

ABSTRACT

AIMS: To investigate the inter-strain variation in (i) substrate utilization and (ii) the restriction fragment length polymorphism (RFLP) pattern based on the distribution of an insertion element (IS1550) in Mycoplasma fermentans strains, and to establish any correlation between subgroups within the species and their source or habitat. METHODS AND RESULTS: Using a sensitive dynamic pH method, the pattern and kinetics of substrate utilization by a panel of 17 M. fermentans strains from various sources was determined. This study correlated the biochemical characteristics of these strains with RFLP patterns based on the distribution of an insertion sequence (IS1550) with the sources of the strains. The test isolates were divided into four major groups according to the pattern of substrates metabolized. Interestingly, two strains isolated from cell lines in RFLP cluster I failed to utilize arginine. Ovine strains showed distinct substrate utilization patterns and produced RFLP patterns not previously encountered. CONCLUSIONS: All strains utilized glucose, but the ability to utilize arginine, fructose and N-acetyl glucosamine varied. There was also some correlation evident between the metabolic data and the RFLP clusters. SIGNIFICANCE AND IMPACT OF THE STUDY: This study has provided a better understanding of the biochemical and genetic diversity of M. fermentans strains from various sources.


Subject(s)
Mycoplasma fermentans/genetics , Mycoplasma fermentans/metabolism , Animals , Arginine/metabolism , Blotting, Southern , Cell Line , Culture Media , DNA, Bacterial/genetics , Fructose/metabolism , Genetic Variation , Glucosamine/metabolism , Humans , Hydrogen-Ion Concentration , Mycoplasma fermentans/growth & development , Polymorphism, Restriction Fragment Length , Sheep/microbiology
16.
Curr Microbiol ; 58(6): 535-40, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19219498

ABSTRACT

A gene, mf1, encoding a novel cholinephosphotransferase in glycoglycerophospholipid (GGPL) biosynthesis of Mycoplasma fermentans PG18 was identified by genomic analysis, cloned, and expressed in Escherichia coli. The mf1 gene comprises an open reading frame of 777 bp encoding 258 amino acids. The mf1 gene product, Mf1, has 23% amino acid homology with LicD of Haemophilus influenzae but no homology with genes of other Mycoplasma species in the GenBank database. The reaction product of Mf1 using alpha-glucopyranosyl-1,2-dipalmitoilglycerol and cytidine 5'-diphosphocholine (CDP-choline) as substrates showed the specific protonated molecule at m/z 896, which corresponded to GGPL-I as determined by matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS). Furthermore, the product ions of choline, phosphocholine, and hexose-bound phosphocholine were detected by tandem mass spectrometry (MS) analysis of protonated molecules at m/z 896. These results identified mf1 as a novel cholinephosphotransferase and showed that the phosphocholine transfer step is involved in the GGPL biosynthesis pathway of M. fermentans. This is the first report of a GGPL biosynthesis enzyme.


Subject(s)
Bacterial Proteins/metabolism , Cloning, Molecular , Diacylglycerol Cholinephosphotransferase/metabolism , Gene Expression , Glycerophosphates/biosynthesis , Mycoplasma fermentans/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Diacylglycerol Cholinephosphotransferase/chemistry , Diacylglycerol Cholinephosphotransferase/genetics , Glycerophosphates/chemistry , Molecular Sequence Data , Mycoplasma fermentans/chemistry , Mycoplasma fermentans/classification , Mycoplasma fermentans/genetics , Phylogeny , Substrate Specificity
17.
Biologicals ; 36(2): 117-21, 2008 Mar.
Article in English | MEDLINE | ID: mdl-17892949

ABSTRACT

A panel of 30 putative Mycoplasma fermentans strains, isolated from various sources including human, ovine and cell lines, were tested by a previously described polymerase chain reaction (PCR) to confirm their identity by amplification of a conserved 206 bp region of the insertion sequence IS1550. In addition, the application of another PCR based on the major part of the IS1550 element showed one or two products of different length (1144 and 1341 bp) enabling M. fermentans strains to be divided into two types designated as Type A and Type B. A PCR, which amplifies the macrophage activating lipopeptide gene (malp), supported the identification of all the strains as M. fermentans. Thirteen other species of Mycoplasma from human sources gave negative results in these tests, with the exception of Mycoplasma orale, which was detected by both IS1550-PCRs based on the major part and the conserved 206 bp region of the IS1550 element. This study suggests that all M. fermentans isolates possess both the IS1550 element and the malp gene. In contrast to the IS1550, the malp gene is shown to be species-specific and the use of a malp PCR described here could prove to be a useful adjunct to IS1550 detection as confirmation of the presence of M. fermentans in clinical material.


Subject(s)
Mycoplasma fermentans/genetics , Mycoplasma fermentans/isolation & purification , Polymerase Chain Reaction/methods , Animals , Cell Line , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Humans , Mycoplasma fermentans/classification , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sheep/microbiology
18.
FEMS Microbiol Lett ; 249(2): 359-66, 2005 Aug 15.
Article in English | MEDLINE | ID: mdl-16054780

ABSTRACT

Human cell lines are often infected by mycoplama strains. We have demonstrated that when infected by Mycoplasma fermentans, human B lymphoma cell proliferation increased strongly. These infected B cells expressed a p45 kDa protein which interacted with the intracellular domain of CD21, the EBV/C3d receptor. p45 analysis demonstrated that this is a new gene which encodes an elongation factor originating from Mycoplasma fermentans. p45 interaction with CD21 was specific, there being no interaction with CD19. This is the first demonstration that Mycoplasma fermentans, in infecting human B cells, generates a p45 Mycoplasma component that interacts with CD21, which is involved in B cell proliferation.


Subject(s)
Burkitt Lymphoma/microbiology , Burkitt Lymphoma/pathology , Lymphoma, B-Cell/microbiology , Lymphoma, B-Cell/pathology , Mycoplasma Infections/metabolism , Mycoplasma fermentans/metabolism , Receptors, Complement 3d/metabolism , Amino Acid Sequence , Base Sequence , Cell Division , Cell Line, Tumor , Codon/genetics , Cytoplasm/metabolism , DNA Primers , Humans , Molecular Sequence Data , Mycoplasma fermentans/genetics , Mycoplasma fermentans/growth & development , Peptide Fragments/chemistry , Polymerase Chain Reaction , Receptors, Complement 3d/genetics
19.
Cancer Sci ; 95(4): 311-5, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15072588

ABSTRACT

We aimed to determine whether mycoplasmas are present in Korean chronic gastritis, and to understand their roles in gastric cancer tumorigenesis, because mycoplasmas resemble Helicobacter pylori in terms of ammonia production and induction of inflammatory cytokines in immune and non-immune cells. The presence and identity of mycoplasmas were assessed by semi-nested PCR and sequencing, and the results were compared with pathologic data. Fifty-six samples collected from Korean chronic gastritis patients were used for this study. Twenty-three (41.1%) were positive for mycoplasmas. Eighteen sequenced samples contained a single human mycoplasma or two mycoplasmas, which were identified as Mycoplasma faucium (13/18), M. fermentans (3/18), M. orale (1/18), M. salivarium (2/18), and M. spermatophilum (1/18). Mycoplasma-infected chronic gastritis samples showed significantly more severe neutrophil infiltration than non-infected samples (P = 0.0135). Mycoplasma profiles in the oral cavity (M. salivarium is major) and stomach were different, and the presence of significant proinflammatory responses in mycoplasma-positive patients suggests that the mycoplasmas are not simply contaminants. Further studies are required to understand whether mycoplasmas play a role in gastric tumorigenesis.


Subject(s)
DNA, Bacterial/isolation & purification , Gastritis/microbiology , Mycoplasma Infections/microbiology , Mycoplasma/isolation & purification , Stomach Neoplasms/etiology , Chronic Disease , Gastritis/metabolism , Gastroscopy , Humans , Korea/epidemiology , Molecular Sequence Data , Mouth/microbiology , Mycoplasma/genetics , Mycoplasma/pathogenicity , Mycoplasma Infections/epidemiology , Mycoplasma Infections/genetics , Mycoplasma fermentans/genetics , Mycoplasma fermentans/isolation & purification , Mycoplasma fermentans/pathogenicity , Mycoplasma salivarium/genetics , Mycoplasma salivarium/isolation & purification , Mycoplasma salivarium/pathogenicity , Organ Specificity , Pyloric Antrum/microbiology , Sequence Analysis, DNA , Stomach/microbiology
20.
Infect Immun ; 72(3): 1657-65, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14977973

ABSTRACT

The lipopeptide FSL-1 [S-(2,3-bispalmitoyloxypropyl)-Cys-Gly-Asp-Pro-Lys-His-Pro-Lys-Ser-Phe, Pam(2)CGDPKHPKSF] synthesized on the basis of the N-terminal structure of a Mycoplasma salivarium lipoprotein capable of activating normal human gingival fibroblasts to induce the cell surface expression of ICAM-1 revealed an activity to induce production of monocyte chemoattractant protein 1, interleukin-6 (IL-6), and IL-8. FSL-1 also activated macrophages to produce tumor necrosis factor alpha as the Mycoplasma fermentans-derived lipopeptide MALP-2 (Pam(2)CGNNDESNISFKEK), a potent macrophage-activating lipopeptide, did. The level of the activity of FSL-1 was higher than that of MALP-2. This result suggests that the difference in the amino acid sequence of the peptide portion affects the activity because the framework structure other than the amino acid sequence of the former is the same as that of the latter. To determine minimal structural requirements for the activity of FSL-1, the diacylglyceryl Cys and the peptide portions were examined for this activity. Both portions did not reveal the activity. A single amino acid substitution from Phe to Arg and a fatty acid substitution from palmitic acid to stearic acid drastically reduced the activity. Similar results were obtained in measuring the NF-kappaB reporter activity of FSL-1 to human embryonic kidney 293 cells transfected with Toll-like receptor 2 and 6, together with a NF-kappaB-dependent luciferase reporter plasmid. These results suggest that both the diacylglyceryl and the peptide portions of FSL-1 are indispensable for the expression of biological activities and for the recognition by Toll-like receptors 2 and 6 and that the recognition of FSL-1 by Toll-like receptors 2 and 6 appears to be hydrophobic.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/immunology , Diglycerides/chemistry , Diglycerides/immunology , Membrane Glycoproteins/metabolism , Mycoplasma salivarium/immunology , Oligopeptides/chemistry , Oligopeptides/immunology , Receptors, Cell Surface/metabolism , Acylation , Amino Acid Sequence , Amino Acid Substitution , Bacterial Proteins/genetics , Bacterial Proteins/toxicity , Cell Line , Diglycerides/genetics , Diglycerides/toxicity , Fibroblasts/immunology , Gingiva/immunology , Humans , Lipopeptides , Membrane Glycoproteins/genetics , Molecular Sequence Data , Molecular Structure , Monocytes/immunology , Mycoplasma fermentans/genetics , Mycoplasma fermentans/immunology , Mycoplasma fermentans/pathogenicity , Mycoplasma salivarium/genetics , Mycoplasma salivarium/pathogenicity , Oligopeptides/genetics , Oligopeptides/toxicity , RNA, Messenger/genetics , RNA, Messenger/metabolism , Receptors, Cell Surface/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Structure-Activity Relationship , Toll-Like Receptor 2 , Toll-Like Receptor 6 , Toll-Like Receptors
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