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1.
Biochem Biophys Res Commun ; 705: 149732, 2024 Apr 23.
Article in English | MEDLINE | ID: mdl-38447390

ABSTRACT

Neurokinin B (NKB) is a tachykinin peptide that has diverse roles in biology, including in human reproductive development. Cellular processing of this peptide is thought to involve formation of a dense core vesicle during transit through the regulated secretory pathway. The ability of NKB to rapidly form an amyloid can contribute to formation of the secretory granule but features that support amyloid formation of NKB are not well understood. NKB contains a diphenylalanine sequence well recognised as an important motif for self-assembly of other peptides including amyloid ß. Using mutations of the diphenylalanine motif we show that this motif in NKB is necessary for amyloid formation, and it is the unique combination of aromaticity and hydrophobicity of phenylalanine that is crucial for aggregation. Using disulfide cross-linking we propose that phenylalanine at sequence position 6 is important for stabilising inter-sheet interactions in the NKB amyloid fibril. Although having a highly conserved sequence, the NKB peptide from zebrafish only contains a single phenylalanine and does not fibrillise as extensively as mammalian NKB. Analysis of self-assembly of NKB-like peptides from different species may help in elucidating their biological roles. Taken together, this work shows that mammalian NKB has evolved, within only 10 residues, a sequence optimised for rapid self-assembly, whilst also containing residues for metal-binding, receptor binding and receptor discrimination.


Subject(s)
Neurokinin B , Neuropeptides , Animals , Humans , Neurokinin B/chemistry , Amyloid , Phenylalanine , Amyloid beta-Peptides , Zebrafish/metabolism , Amyloidogenic Proteins , Mammals/metabolism
2.
Biomolecules ; 12(11)2022 10 28.
Article in English | MEDLINE | ID: mdl-36358935

ABSTRACT

Neurokinin B is a tachykinin peptide involved in a diverse range of neuronal functions. It rapidly forms an amyloid, which is considered physiologically important for efficient packing into dense core secretory vesicles within hypothalamic neurons. Disassembly of the amyloid is thought to require the presence of copper ions, which interact with histidine at the third position in the peptide sequence. However, it is unclear how the histidine is involved in the amyloid structure and why copper coordination can trigger disassembly. In this work, we demonstrate that histidine contributes to the amyloid structure via π-stacking interactions with nearby phenylalanine residues. The ability of neurokinin B to form an amyloid is dependent on any aromatic residue at the third position in the sequence; however, only the presence of histidine leads to both amyloid formation and rapid copper-induced disassembly.


Subject(s)
Histidine , Neurokinin B , Histidine/chemistry , Neurokinin B/chemistry , Copper/chemistry , Amyloid/chemistry , Amyloidogenic Proteins , Peptides , Amyloid beta-Peptides/chemistry
3.
Metallomics ; 12(11): 1802-1810, 2020 11 01.
Article in English | MEDLINE | ID: mdl-33084705

ABSTRACT

The tachykinin neuropeptide of neurokinin B (NKB) is a copper-binding amyloid peptide with important roles in the regulation of physiological functions and pathophysiological processes in the central and peripheral nervous systems. In this work, the formation of a NKB-Cu2+ complex in a 1 : 1 stoichiometry was confirmed by mass spectrometry. The self-assembly of NKB and its mutant species was investigated by Thioflavin T (ThT) fluorescence assay and atomic force microscopy (AFM), and at the same time, the effect of Cu2+ on the aggregation of NKB was studied. As evidenced by cyclic voltammetry, the redox potential of NKB-Cu2+ was determined to be 0.77 V (vs. Ag/AgCl). It has been demonstrated that NKB at low concentrations exerts its neuroprotective function by inhibiting Cu2+-mediated reactive oxygen species (ROS) production in the presence of ascorbic acid (AA). In comparison with equivalent Cu2+, the peptide-Cu2+ aggregates aggravated the viability of PC-12 cells more seriously in the absence of AA. These results should be extremely valuable for understanding the NKB/Cu2+ interactions and the toxicity mechanism of Cu2+ associated with neurodegenerative diseases.


Subject(s)
Copper/toxicity , Neurokinin B/metabolism , Animals , Benzothiazoles/metabolism , Cell Death/drug effects , Cell Survival/drug effects , Electrochemistry , Mass Spectrometry , Neurokinin B/chemistry , Oxidation-Reduction/drug effects , PC12 Cells , Protein Binding/drug effects , Rats , Time Factors
4.
Molecules ; 25(15)2020 Jul 24.
Article in English | MEDLINE | ID: mdl-32722221

ABSTRACT

Recent advances and large-scale use of hybrid imaging modalities like PET-CT have led to the necessity of improving nano-drug carriers that can facilitate both functional and metabolic screening in nuclear medicine applications. In this study, we focused on the evaluation of four potential imaging nanoparticle structures labelled with the 68Ga positron emitter. For this purpose, we functionalized NHS-activated PEG-gold nanoparticles with 68Ga-DOTA-Neuromedin B, 68Ga-DOTA-PEG(4)-BBN(7-14), 68Ga-DOTA-NT and 68Ga-DOTA-Neuromedin N. In vitro binding kinetics and specific binding to human HT-29 colon carcinoma cells and DU-145 prostate carcinoma cells respectively were assessed, over 75% retention being obtained in the case of 68Ga-DOTA-PEG(4)-BBN(7-14)-AuNP in prostate tumour cells and over 50% in colon carcinoma cells. Biodistribution in NU/J mice highlighted a three-fold uptake increase in tumours at 30 min post-injection of 68Ga-DOTA-NT-AuNP and 68Ga-DOTA-PEG(4)-BBN(7-14)-AuNP compared to 68Ga-DOTA-NT and 68Ga-DOTA-PEG(4)-BBN(7-14) respectively, therewith fast distribution in prostate and colon tumours and minimum accumulation in non-targeted tissues.


Subject(s)
Colonic Neoplasms/diagnostic imaging , Gold/administration & dosage , Neurokinin B/analogs & derivatives , Neurotensin/chemistry , Peptide Fragments/chemistry , Peptides/chemistry , Prostatic Neoplasms/diagnostic imaging , Animals , Biological Availability , Bombesin/chemistry , Cell Line, Tumor , Cell Proliferation/drug effects , Cell Survival/drug effects , Colonic Neoplasms/metabolism , Gallium Radioisotopes/administration & dosage , Gallium Radioisotopes/chemistry , Gallium Radioisotopes/pharmacokinetics , Gold/chemistry , Gold/pharmacokinetics , HT29 Cells , Humans , Male , Metal Nanoparticles/chemistry , Mice , Neoplasm Transplantation , Neurokinin B/chemistry , Peptides/administration & dosage , Peptides/pharmacokinetics , Positron-Emission Tomography , Prostatic Neoplasms/metabolism , Receptors, Bombesin/metabolism , Receptors, Neurotensin/metabolism
5.
Gen Comp Endocrinol ; 287: 113342, 2020 02 01.
Article in English | MEDLINE | ID: mdl-31783025

ABSTRACT

Copper is a metal ion present in all organisms, where it has well-known roles in association with proteins and enzymes essential for cellular processes. In the early decades of the twentieth century copper was shown to influence mammalian reproductive biology, and it was subsequently shown to exert effects primarily at the level of the pituitary gland and/or hypothalamic regions of the brain. Furthermore, it has been reported that copper can interact with key neuropeptides in the hypothalamic-pituitary-gonadal axis, notably gonadotropin-releasing hormone (GnRH) and neurokinin B. Interestingly, recent phylogenetic analysis of the sequences of GnRH-related peptides indicates that copper binding is an evolutionarily ancient property of this neuropeptide family, which has been variously retained, modified or lost in the different taxa. In this mini-review the metal-binding properties of neuropeptides in the vertebrate reproductive pathway are reviewed and the evolutionary and functional significance of copper binding by GnRH-related neuropeptides in vertebrates and invertebrates are discussed.


Subject(s)
Copper/pharmacology , Endocrine System/drug effects , Gonadotropin-Releasing Hormone/drug effects , Neurokinin B/drug effects , Reproduction/drug effects , Animals , Endocrine System/physiology , Gonadotropin-Releasing Hormone/chemistry , Gonadotropin-Releasing Hormone/physiology , Invertebrates/metabolism , Mammals/metabolism , Neurokinin B/chemistry , Neurokinin B/physiology , Protein Conformation/drug effects , Reproduction/physiology , Structure-Activity Relationship , Vertebrates/metabolism
6.
J Struct Biol ; 208(3): 107394, 2019 12 01.
Article in English | MEDLINE | ID: mdl-31561000

ABSTRACT

The formation of amyloid is considered an intrinsic ability of most polypeptides. It is a structure adopted by many neuropeptides and neurohormones during the formation of dense core vesicles in secretory cells, yet the mechanisms mediating assembly and disassembly of these amyloids remain unclear. Neurokinin B is a neuropeptide thought to form an amyloid in secretory cells. It is known to coordinate copper, but the physiological significance of metal binding is not known. In this work we explored the amyloid formation of neurokinin B and the impact that metals had on the aggregation behaviour. We show that the production of neurokinin B amyloid is dependent on the phosphate concentration, the pH and the presence of a histidine at position 3 in the primary sequence. Copper(II) and nickel(II) coordination to the peptide, which requires the histidine imidazole group, completely inhibits amyloid formation, whereas zinc(II) slows, but does not inhibit fibrillogenesis. Furthermore, we show that copper(II) can rapidly disassemble preformed neurokinin B amyloid. This work identifies a role for copper in neurokinin B structure and reveals a mechanism for amyloid assembly and disassembly dependent on metal coordination.


Subject(s)
Amyloid/metabolism , Copper/pharmacology , Neurokinin B/metabolism , Amyloid/antagonists & inhibitors , Amyloid/chemistry , Benzothiazoles/chemistry , Electron Spin Resonance Spectroscopy , Histidine/chemistry , Hydrogen-Ion Concentration , Magnetic Resonance Spectroscopy , Neurokinin B/chemistry , Nickel/pharmacology , Phosphates/chemistry
7.
Biochem Biophys Res Commun ; 497(1): 1-6, 2018 02 26.
Article in English | MEDLINE | ID: mdl-29427668

ABSTRACT

Gonadotropin releasing hormone (GnRH) triggers secretion of luteinizing hormone and follicle stimulating hormone from gonadotropic cells in the anterior pituitary gland. GnRH is able to bind copper, and both in vitro and in vivo studies have suggested that the copper-GnRH complex is more potent at triggering gonadotropin release than GnRH alone. However, it remains unclear whether copper-GnRH is the active species in vivo. To explore this we have estimated the GnRH-copper affinity and have examined whether GnRH remains copper-bound in the presence of serum albumin and the neuropeptide neurokinin B, both copper-binding proteins that GnRH will encounter in vivo. We show that GnRH has a copper dissociation constant of ∼0.9 × 10-9 M, however serum albumin and neurokinin B can extract metal from the copper-GnRH complex. It is therefore unlikely that a copper-GnRH complex will survive transit through the pituitary portal circulation and that any effect of copper must occur outside the bloodstream in the absence of neurokinin B.


Subject(s)
Copper/chemistry , Gonadotropin-Releasing Hormone/chemistry , Neurokinin B/chemistry , Serum Albumin, Bovine/chemistry , Kinetics , Protein Binding
8.
Curr Opin Endocrinol Diabetes Obes ; 25(1): 36-41, 2018 02.
Article in English | MEDLINE | ID: mdl-29120926

ABSTRACT

PURPOSE OF REVIEW: The current review highlights recent advances in physiological and pharmacological researches in biology of mammalian bombesin-like peptides (BLPs). RECENT FINDINGS: BLPs and their receptors were found to have regulatory roles in many biological processes in central nervous system. Two BLPs, neuromedin B and gastrin-releasing peptide (GRP), and their receptors are required for regulation of basal and induced sighing activity in rodents. This is the first study demonstrating central pathways involved in regulation of sighing activity. GRP receptor (GRPR) expressing neurons are excitatory glutamatergic interneurons located in the dorsal lamina without projections outside the spinal cord and mediate itch signals via vesicular glutamate transporter 2. Those neurons receive itch signals and make synapses with the parabrachial nucleus projecting spinal neurons to transmit itch signals to parabrachial nucleus. GRP expressing interneurons function in a proposed 'leaky gate model' to interpret the mechanism of both pain and itch transmission. In addition to recent advances of biology in nervous system, BLPs and their receptors were found to play potential regulatory roles in innate and adaptive immune responses and tissue development. SUMMARY: Several important biological roles of BLPs and their receptors in nervous system were identified. Together with researches regarding central roles of BLPs, studies revealing the regulatory roles of BLPs and their receptors in immunology and tissue development provide us with novel insights into understanding of the biology of BLPs and their receptors.


Subject(s)
Biological Phenomena , Gastrin-Releasing Peptide/physiology , Neurokinin B/analogs & derivatives , Receptors, Bombesin/physiology , Animals , Bombesin/chemistry , Bombesin/metabolism , Gastrin-Releasing Peptide/chemistry , Glucose/metabolism , Humans , Neurokinin B/chemistry , Neurokinin B/physiology , Organogenesis/genetics , Pain Perception/physiology , Pruritus/genetics , Pruritus/metabolism
9.
Biosens Bioelectron ; 87: 278-284, 2017 Jan 15.
Article in English | MEDLINE | ID: mdl-27567254

ABSTRACT

An efficient ratiometric electrochemical biosensor for Cu2+ determination was constructed using dual hydroxyl-functionalized poly (ionic liquid) (DHF-PIL) as the catalyst support. The DHF-PIL exhibited typical macroporous structure, which provided a high surface area of 39.31m2/g for the sufficient loading of biomolecules. The specific recognition of Cu2+ was accomplished by employing neurokinin B (NKB) for the first time, which could bind to Cu2+ to form a [CuII(NKB)2] complex with high specificity. Meanwhile, a common redox mediator, 2, 2'-Azinobis-(3-ethylbenzthiazoline-6-sulfonate) (ABTS) was modified into DHF-PIL by electrostatic interactions to act as an inner reference molecule, which provided a built-in correction for environmental effects and improving the detection accuracy. With this strategy, the developed electrochemical biosensor was capable of determining Cu2+ with a linear range between 0.9 and 36.1µM and low detection limit (LOD) and quantification limit (LOQ) of 0.24 and 0.6µM, respectively. The sensor also displayed a satisfactory selectivity against a series of interferences in the brain, including metal ions, amino acids and other endogenous compounds. Accordingly, the present biosensor was successfully applied to evaluate Cu2+ levels in normal and AD rats.


Subject(s)
Alzheimer Disease/cerebrospinal fluid , Biosensing Techniques/methods , Brain Chemistry , Copper/analysis , Copper/cerebrospinal fluid , Electrochemical Techniques/methods , Ionic Liquids/chemistry , Alzheimer Disease/pathology , Animals , Catalysis , Electrodes , Limit of Detection , Neurokinin B/chemistry , Rats
10.
J Phys Chem B ; 119(30): 9696-705, 2015 Jul 30.
Article in English | MEDLINE | ID: mdl-26130191

ABSTRACT

Amyloids are associated with diseases, including Alzheimer's, as well as functional roles such as storage of peptide hormones. It is still unclear what differences exist between aberrant and functional amyloids. However, it is known that soluble oligomers formed during amyloid aggregation are more toxic than the final fibrils. Here, we perform molecular dynamics simulations to study the aggregation of the amyloid-ß peptide Aß25-35, associated with Alzheimer's disease, and two functional amyloid-forming tachykinin peptides: kassinin and neuromedin K. Although the three peptides have similar primary sequences, tachykinin peptides, in contrast to Aß25-35, form nontoxic amyloids. Our simulations reveal that the charge of the C-terminus is essential to controlling the aggregation process. In particular, when the kassinin C-terminus is not amidated, the aggregation kinetics decreases considerably. In addition, we observe that the monomeric peptides in extended conformations aggregate faster than those in collapsed hairpin-like conformations.


Subject(s)
Amyloid beta-Peptides/chemistry , Kassinin/chemistry , Molecular Dynamics Simulation , Neurokinin B/chemistry , Protein Multimerization , Amino Acid Sequence , Molecular Sequence Data , Protein Structure, Secondary
11.
Endocrinology ; 155(9): 3582-96, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24971612

ABSTRACT

TAC3 is a member of tachykinins, and its gene product neurokinin B (NKB) has recently emerged as a key regulator for LH through modulation of kisspeptin/GnRH system within the hypothalamus. In fish models, TAC3 not only encodes NKB but also a novel tachykinin-like peptide called NKB-related peptide (NKBRP), and the pituitary actions of these TAC3 gene products are still unknown. Using grass carp as a model, the direct effects and postreceptor signaling for the 2 TAC3 products were examined at the pituitary level. Grass carp TAC3 was cloned and confirmed to encode NKB and NKBRP similar to that of other fish species. In carp pituitary cells, NKB and NKBRP treatment did not affect LH release and gene expression but up-regulated prolactin (PRL) and somatolactin (SL)α secretion, protein production, and transcript expression. The stimulation by these 2 TAC3 gene products on PRL and SLα release and mRNA levels were mediated by pituitary NK2 and NK3 receptors, respectively. Apparently, NKB- and NKBRP-induced SLα secretion and transcript expression were caused by adenylate cyclase/cAMP/protein kinase A, phospholipase C/inositol 1,4,5-triphosphate/protein kinase C and Ca(2+)/calmodulin/Ca(2+)/calmodulin-dependent protein kinase II activation. The signal transduction for the corresponding responses on PRL release and mRNA expression were also similar, except that the protein kinase C component was not involved. These findings suggest that the 2 TAC3 gene products do not play a role in LH regulation at the pituitary level in carp species but may serve as novel stimulators for PRL and SLα synthesis and secretion via overlapping postreceptor signaling mechanisms coupled to NK2 and NK3 receptors, respectively.


Subject(s)
Carps/metabolism , Fish Proteins/metabolism , Glycoproteins/metabolism , Neurokinin B/metabolism , Pituitary Gland/metabolism , Pituitary Hormones/metabolism , Prolactin/metabolism , Receptors, Neurokinin-2/metabolism , Receptors, Neurokinin-3/metabolism , Signal Transduction , Amino Acid Sequence , Animals , Carps/genetics , Cloning, Molecular , Fish Proteins/genetics , Glycoproteins/genetics , Models, Animal , Molecular Sequence Data , Neurokinin B/chemistry , Neurokinin B/genetics , Phylogeny , Pituitary Gland/cytology , Pituitary Hormones/genetics , Prolactin/genetics , Receptors, Neurokinin-2/genetics , Receptors, Neurokinin-3/genetics , Sequence Alignment
12.
J Reprod Dev ; 59(5): 463-9, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23812498

ABSTRACT

Neurokinin B (NKB), encoded by TAC3, is thought to be an important accelerator of pulsatile gonadotropin-releasing hormone release. This study aimed to clarify the transcriptional regulatory mechanism of goat TAC3. First, we determined the full-length mRNA sequence of goat TAC3 from the hypothalamus to be 820 b, including a 381 b coding region, with the putative transcription start site located 143-b upstream of the start codon. The deduced amino acid sequence of NKB, which is produced from preproNKB, was completely conserved among goat, cattle, and human. Next, we cloned 5'-upstream region of goat TAC3 up to 3400 b from the translation initiation site, and this region was highly homologous with cattle TAC3 (89%). We used this goat TAC3 5'-upstream region to perform luciferase assays. We created a luciferase reporter vector containing DNA constructs from -2706, -1837, -834, -335, or -197 to +166 bp (the putative transcription start site was designated as +1) of goat TAC3 and these were transiently transfected into mouse hypothalamus-derived N7 cells and human neuroblastoma-derived SK-N-AS cells. The luciferase activity gradually increased with the deletion of the 5'-upstream region, suggesting that the transcriptional suppressive region is located between -2706 and -336 bp and that the core promoter exists downstream of -197 bp. Estradiol treatment did not lead to significant suppression of luciferase activity of any constructs, suggesting the existence of other factor(s) that regulate goat TAC3 transcription.


Subject(s)
Goats , Neurokinin B/metabolism , Neurons/metabolism , Promoter Regions, Genetic , Transcription, Genetic , 5' Flanking Region , Amino Acid Sequence , Animals , Animals, Inbred Strains , Base Sequence , Cell Line , Conserved Sequence , Estrogens/pharmacology , Female , Fertility Agents, Female/pharmacology , Genes, Reporter/drug effects , Humans , Japan , Male , Mice , Molecular Sequence Data , Neurokinin B/chemistry , Neurokinin B/genetics , Neurons/drug effects , Promoter Regions, Genetic/drug effects , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Homology , Transcription, Genetic/drug effects
13.
ACS Chem Neurosci ; 4(10): 1371-81, 2013 Oct 16.
Article in English | MEDLINE | ID: mdl-23875773

ABSTRACT

Neurokinin B (NKB) is a member of the tachykinin family of neuropeptides that have neuroinflammatory, neuroimmunological, and neuroprotective functions. In a neuroprotective role, tachykinins can help protect cells against the neurotoxic processes observed in Alzheimer's disease. A change in copper homeostasis is a clear feature of Alzheimer's disease, and the dysregulation may be a contributory factor in toxicity. Copper has recently been shown to interact with neurokinin A and neuropeptide γ and can lead to generation of reactive oxygen species and peptide degradation, which suggests that copper may have a place in tachykinin function and potentially misfunction. To explore this, we have utilized a range of spectroscopic techniques to show that NKB, but not substance P, can bind Cu(II) in an unusual [Cu(II)(NKB)2] neutral complex that utilizes two N-terminal amine and two imidazole nitrogen ligands (from each molecule of NKB) and the binding substantially alters the structure of the peptide. Using 1321N1 astrocytoma cells, we show that copper can enter the cells and subsequently open plasma membrane calcium channels but when bound to neurokinin B copper ion uptake is inhibited. This data suggests a novel role for neurokinin B in protecting cells against copper-induced calcium changes and implicates the peptide in synaptic copper homeostasis.


Subject(s)
Alzheimer Disease/metabolism , Astrocytoma/chemistry , Astrocytoma/metabolism , Copper/chemistry , Neurokinin B/chemistry , Alzheimer Disease/pathology , Alzheimer Disease/prevention & control , Astrocytoma/pathology , Cell Line, Tumor , Coordination Complexes/chemistry , Coordination Complexes/metabolism , Copper/metabolism , Humans , Neurokinin B/antagonists & inhibitors , Neurokinin B/metabolism , Peptides/chemistry , Peptides/metabolism , Protein Binding
14.
Phys Chem Chem Phys ; 15(3): 807-15, 2013 Jan 21.
Article in English | MEDLINE | ID: mdl-23202809

ABSTRACT

Adsorption of decapeptide neuromedin B (NMB) on copper electrode has been investigated by in situ surface-enhanced Raman scattering (SERS) spectroelectrochemistry in the temperature interval from 12 to 72 °C at -0.600 and -1.000 V potentials. It was found that intensities of peptide bands decrease at temperatures above 30 °C with higher decrease slope at -1.000 V. Frequency of F12 mode (1004 cm(-1)) of non-surface-interactive phenylalanine residue was found to be insensitive to temperature variation at both studied electrode potentials, while frequency-temperature curves for surface-interactive groups (Amide-III, methylene) were found to be controlled by the potential. In particular, opposite frequency-temperature trends were detected for Amide-III (Am-III) mode indicating decrease in H-bonding interaction strength of amide C[double bond, length as m-dash]O and N-H groups above 38 °C for -0.600 V, and increase in H-bonding interaction strength between 12 and 72 °C for -1.000 V. Anomalous Am-III temperature-dependence of the frequency at -1.000 V was explained by temperature-induced transformation of a disordered secondary structure to a helix-like conformation. The potential-difference spectrum revealed interaction of methylene groups with Cu surface at sufficiently negative potential values because of the appearance of a soft C-H stretching band near 2825 cm(-1) and a broad band near 2904 cm(-1) assigned to vibration of a distal C-H bond of the surface-confined methylene group. Consequently, a rapid decrease in frequency of CH(2)-stretching band with temperature was observed at -1.000 V, while no essential frequency changes were detected for this mode at -0.600 V. The results show that electrode potential controls the temperature-dependence of the frequency for vibrations associated with surface-interactive molecular groups.


Subject(s)
Copper/chemistry , Neurokinin B/analogs & derivatives , Spectrum Analysis, Raman , Electrodes , Hydrogen Bonding , Neurokinin B/chemistry , Temperature
15.
J Phys Chem B ; 116(48): 13941-52, 2012 Dec 06.
Article in English | MEDLINE | ID: mdl-23157485

ABSTRACT

In this work we elucidate the conformational preferences of two amyloid-forming peptides, Arginine-Vasopressin and Neuromedin-K, and two new biomacromolecular conjugates obtained by linking the two peptides to a polyester (poly(R-lactic acid)) chain. The conformational properties of the new hybrid conjugates have been assessed through molecular dynamics simulations and compared to those of their individual components. Our results suggest that the free unconjugated peptides tend to adopt backbone arrangements which resemble a ß-hairpin shape, a conformation which has been reported to facilitate amyloid self-aggregation. The backbone conformational preferences of the unlinked peptides are maintained in the peptide-polymer hybrid. Yet significant differences in the side-chains nonbonding interactions patterns were detected between the two states. This suggests that the conformational profile of the peptides' backbones is preserved when linked to the polymer, maintaining the amyloid precursor-like structure. Additionally, several hydrodynamic parameters were computed for both the polylactic acid and for the conjugates: no significant differences were observed, which suggests that the peptide moiety of the hybrid does not significantly affect the conformational tendencies of the polymer chain. Combined, our results provide a conformational exploration of two amyloid-forming peptides and first steps toward the design of two feasible self-aggregating hybrid materials.


Subject(s)
Amyloid/chemistry , Arginine Vasopressin/chemistry , Lactic Acid/chemistry , Neurokinin B/chemistry , Polymers/chemistry , Amino Acid Sequence , Molecular Dynamics Simulation , Polyesters , Protein Structure, Secondary
16.
J Chem Inf Model ; 51(11): 2932-8, 2011 Nov 28.
Article in English | MEDLINE | ID: mdl-21913652

ABSTRACT

The tachykinin receptor NK3 is a member of the rhodopsin family of G-protein coupled receptors. The NK3 receptor has been regarded as an important drug target due to diverse physiological functions and its possible role in the pathophysiology of psychiatric disorders, including schizophrenia. The NK3 receptor is primarily activated by the tachykinin peptide hormone neurokinin B (NKB) which is the most potent natural agonist for the NK3 receptor. NKB has been reported to play a vital role in the normal human reproduction pathway and in potentially life threatening diseases such as pre-eclampsia and as a neuroprotective agent in the case of neurodegenerative diseases. Agonist binding to the receptor is a critical event in initiating signaling, and therefore a characterization of the structural features of the agonists can reveal the molecular basis of receptor activation and help in rational design of novel therapeutics. In this study a molecular model for the interaction of the primary ligand NKB with its G-protein coupled receptor NK3 has been developed. A three-dimensional model for the NK3 receptor has been generated by homology modeling using rhodopsin as a template. A knowledge based docking of the NMR derived bioactive conformation of NKB to the receptor has been performed utilizing limited ligand binding data obtained from photoaffinity labeling and site-directed mutagenesis studies. A molecular model for the NKB-NK3 receptor complex obtained sheds light on the topographical features of the binding pocket of the receptor and provides insight into the biochemical data currently available for the receptor.


Subject(s)
Computational Biology/methods , Neurokinin B/chemistry , Receptors, Neurokinin-3/chemistry , Rhodopsin/chemistry , Amino Acid Sequence , Animals , Binding Sites , Cattle , Female , Humans , Ligands , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Neurodegenerative Diseases/drug therapy , Neurodegenerative Diseases/metabolism , Neurokinin B/metabolism , Neurokinin B/pharmacology , Photoaffinity Labels/analysis , Pre-Eclampsia/drug therapy , Pre-Eclampsia/metabolism , Pregnancy , Protein Binding , Receptors, Neurokinin-3/agonists , Receptors, Neurokinin-3/metabolism , Rhodopsin/agonists , Rhodopsin/metabolism , Schizophrenia/drug therapy , Schizophrenia/metabolism , Structural Homology, Protein
17.
J Phys Chem B ; 115(35): 10525-36, 2011 Sep 08.
Article in English | MEDLINE | ID: mdl-21812441

ABSTRACT

Surface-enhanced Raman scattering (SERS), electrochemistry, and generalized two-dimensional correlation analysis (G2DCA) methods were used to define neuromedin B (NMB) ordered superstructures on Ag, Au, and Cu electrode surfaces at different applied electrode potentials in an aqueous solution at physiological pH. The orientation of NMB and the adsorption mechanism were determined based on the analysis of enhancement, broadness, and shift in wavenumber of particular bands, which allow drawing some conclusions about NMB geometry and changes in this geometry upon change of the electrode type and applied electrode potential. The presented data demonstrated that NMB deposited onto the Ag, Au, and Cu electrode surfaces showed bands due to vibrations of the moieties that were in contact/close proximity to the electrode surfaces and thus were located on the same side of the polypeptide backbone. These included the Phe(9) and Trp(4) rings, the sulfur atom of Met(10), and the -CCN- and -C═O units of Asn(2). However, some subtle variations in the arrangement of these fragments upon changes in the applied electrode potential were distinguished. The Amide-III vibrations exhibited an electrochemical Stark effect (potential dependent frequencies) with Stark tuning slope sensitive to the electrode material. Potential-difference spectrum revealed that the imidazole ring of His(8) was bonded to the Cu electrode surface at relatively positive potentials.


Subject(s)
Copper/chemistry , Gold/chemistry , Neurokinin B/analogs & derivatives , Silver/chemistry , Adsorption , Electrodes , Neurokinin B/chemistry , Spectrum Analysis, Raman , Surface Properties
18.
J Phys Chem B ; 113(14): 4978-85, 2009 Apr 09.
Article in English | MEDLINE | ID: mdl-19296643

ABSTRACT

We used surface-enhanced Raman scattering (SERS) to characterize the adsorption behavior of bombesin (BN) and five BN-related peptides, including phyllolitorin, [Leu(8)]phyllolitorin, neuromedin C (NMC), neuromedin B (NMB), and PG-L (Pseudophryne guntheri), in a silver colloidal solution. Our experiments show that the pyrrole coring of the Trp and aromatic ring of Phe of these peptides are preferentially adsorbed on silver nanoparticles. However, the geometry of the rings and the strength of the interactions with this surface vary among peptides. Additionally, these peptides are weakly coordinated to the colloidal silver surface through the CO fragment of a peptide bond, between Gln/Leu/His and Trp residues, and CNC and SC fragments. Also, using the recently reported SERS spectra of these peptides immobilized onto an electrochemically roughened silver electrode surface, we demonstrate substrate-induced changes in the adsorption behavior of these peptides. Comparative analysis indicates that the interactions between peptides and the enhancing surfaces depend strongly on the geometry of the Trp, CONH, and SC fragments of these biomolecules etched on the surfaces.


Subject(s)
Bombesin/analogs & derivatives , Bombesin/chemistry , Nanoparticles/chemistry , Neurokinin B/analogs & derivatives , Oligopeptides/chemistry , Peptide Fragments/chemistry , Pyrrolidonecarboxylic Acid/analogs & derivatives , Silver/chemistry , Adsorption , Animals , Anura , Colloids/chemistry , Electrodes , Neurokinin B/chemistry , Pyrrolidonecarboxylic Acid/chemistry , Spectrum Analysis, Raman/methods , Surface Properties
19.
J Biol Chem ; 282(51): 37074-81, 2007 Dec 21.
Article in English | MEDLINE | ID: mdl-17932029

ABSTRACT

Aminopeptidase A (APA) plays an important role in the regulation of blood pressure by mediating angiotensin II degradation in the renin-angiotensin system. The Ca2+-induced modulation of enzymatic activity is the most characteristic feature of APA among the M1 family of aminopeptidases. In this study, we used site-directed mutagenesis for any residues responsible for the Ca2+ modulation of human APA. Alignment of sequences of the M1 family members led to the identification of Asp-221 as a significant residue of APA among the family members. Replacement of Asp-221 with Asn or Gln resulted in a loss of Ca2+ responsiveness toward synthetic substrates. These enzymes were also unresponsive to Ca2+ when peptide hormones, such as angiotensin II, cholecystokinin-8, neurokinin B, and kallidin, were employed as substrates. These results suggest that the negative charge of Asp-221 is essential for Ca2+ modulation of the enzymatic activity of APA and causes preferential cleavage of acidic amino acid at the N-terminal end of substrate peptides.


Subject(s)
Aspartic Acid/chemistry , Calcium/chemistry , Glutamyl Aminopeptidase/chemistry , Amino Acid Substitution , Angiotensin II/chemistry , Angiotensin II/metabolism , Aspartic Acid/genetics , Aspartic Acid/metabolism , Blood Pressure/physiology , Calcium/metabolism , Cholecystokinin/chemistry , Cholecystokinin/metabolism , Enzyme Activation/physiology , Glutamyl Aminopeptidase/genetics , Glutamyl Aminopeptidase/metabolism , Humans , Kallidin/chemistry , Kallidin/metabolism , Mutagenesis, Site-Directed , Mutation, Missense , Neurokinin B/chemistry , Neurokinin B/metabolism , Sequence Alignment , Substrate Specificity
20.
J Mol Endocrinol ; 39(3): 189-98, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17766644

ABSTRACT

Placental neurokinin B appears to be post-translationally modified by phosphocholine (PC) attached to the aspartyl side chain at residue 4 of the mature peptide. Corticotrophin releasing factor (CRF) was found to be expressed by the rat placenta with the main secreted forms being phosphocholinated proCRF+/- one or two polysaccharide moieties. A combination of high-pressure liquid chromatography (HPLC) and two-site immunometric analysis suggested that PC was also attached to the placental precursors of adrenocorticotrophin, hemokinin, activin and follistatin. However, the fully processed forms of rat placental activin and CRF were free of PC. Formerly, the parasitic filarial nematodes have used PC as a post-translational modification, attached via the polysaccharide moiety of certain secretory glycoproteins to attenuate the host immune system allowing parasite survival, but it is the PC group itself which endows the carrier with the biological activity. The fact that treatment of proCRF peptides with phospholipase C but not endoglycosidase destroyed PC immunoreactivity suggested a simpler mode of attachment of PC to placental peptides than that used by nematodes. Thus, it is possible that by analogy the placenta uses its secreted phosphocholinated hormones to modulate the mother's immune system and help protect the placenta from rejection.


Subject(s)
Corticotropin-Releasing Hormone/metabolism , Peptides/metabolism , Phosphorylcholine/metabolism , Placenta/metabolism , Protein Processing, Post-Translational , Animals , Antibodies/metabolism , Corticotropin-Releasing Hormone/chemistry , Female , Humans , Neurokinin B/chemistry , Neurokinin B/metabolism , Peptides/chemistry , Rats , Rats, Wistar
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