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1.
Arch Virol ; 169(7): 138, 2024 Jun 07.
Article in English | MEDLINE | ID: mdl-38847856

ABSTRACT

Human norovirus (HuNoV) is responsible for most cases of gastroenteritis worldwide, but information about the prevalence and diversity of HuNoV infections in lower-income settings is lacking. In order to provide more information about the burden and distribution of norovirus in Nigeria, we systematically reviewed original published research articles on the prevalence of HuNoV in Nigeria by accessing databases, including PubMed, Web of Science, ScienceDirect, Google Scholar, and African Journals Online (AJOL). The protocol for the review was registered on PROSPERO (registration number CRD42022308857). Thirteen relevant articles were included in the review, and 10 of them were used for meta-analysis. The pooled prevalence of HuNoV-associated gastroenteritis among children below 5 years of age in Nigeria, determined using the random-effects model, was 10.9% (95% CI, 6.7-16.7%). Among children below the age of 5 presenting with HuNoV infections, the highest prevalence was in children ≤2 years old (n = 127, 83%). The prevalence of HuNoV infections was seen to decrease with increasing age. In addition, HuNoV was detected in asymptomatic food handlers, bats, and seafoods. A total of 85 sequences of HuNoV isolates from Nigeria have been determined, and based on those sequences, the most prevalent norovirus genogroup was GII (84%). Genotypes GII.4 and GI.3 were the most frequently identified genotypes, with GII.4 constituting 46% of all of the HuNoVs identified in Nigeria. These results suggest a risk associated with cocirculation of emerging variants with known genotypes because of their recombination potential. Larger molecular epidemiological studies are still needed to fully understand the extent and pattern of circulation of HuNoVs in Nigeria.


Subject(s)
Caliciviridae Infections , Gastroenteritis , Norovirus , Nigeria/epidemiology , Norovirus/genetics , Norovirus/classification , Norovirus/isolation & purification , Caliciviridae Infections/epidemiology , Caliciviridae Infections/virology , Humans , Gastroenteritis/epidemiology , Gastroenteritis/virology , Prevalence , Child, Preschool , Genotype , Phylogeny , Infant , Child
2.
J Med Virol ; 96(5): e29679, 2024 May.
Article in English | MEDLINE | ID: mdl-38767190

ABSTRACT

Acute gastroenteritis (AGE) represents a world public health relevant problem especially in children. Enteric viruses are the pathogens mainly involved in the episodes of AGE, causing about 70.00% of the cases. Apart from well-known rotavirus (RVA), adenovirus (AdV) and norovirus (NoV), there are various emerging viral pathogens potentially associated with AGE episodes. In this study, the presence of ten different enteric viruses was investigated in 152 fecal samples collected from children hospitalized for gastroenteritis. Real time PCR results showed that 49.3% of them were positive for viral detection with the following prevalence: norovirus GII 19.7%, AdV 15.8%, RVA 10.5%, human parechovirus (HPeV) 5.3%, enterovirus (EV) 3.3%, sapovirus (SaV) 2.6%. Salivirus (SalV), norovirus GI and astrovirus (AstV) 1.3% each, aichivirus (AiV) found in only one patient. In 38.2% of feces only one virus was detected, while co-infections were identified in 11.8% of the cases. Among young patients, 105 were ≤5 years old and 56.0% tested positive for viral detection, while 47 were >5 years old with 40.0% of them infected. Results obtained confirm a complex plethora of viruses potentially implicated in gastroenteritis in children, with some of them previously known for other etiologies but detectable in fecal samples. Subsequent studies should investigate the role of these viruses in causing gastroenteritis and explore the possibility that other symptoms may be ascribed to multiple infections.


Subject(s)
COVID-19 , Coinfection , Feces , Gastroenteritis , Humans , Gastroenteritis/virology , Gastroenteritis/epidemiology , Child, Preschool , Coinfection/virology , Coinfection/epidemiology , Feces/virology , Infant , Italy/epidemiology , Child , Male , Female , COVID-19/epidemiology , COVID-19/virology , Sapovirus/isolation & purification , Sapovirus/genetics , Viruses/isolation & purification , Viruses/classification , Viruses/genetics , Prevalence , Norovirus/isolation & purification , Norovirus/genetics , Adolescent , Virus Diseases/epidemiology , Virus Diseases/virology , Infant, Newborn , SARS-CoV-2 , Rotavirus/isolation & purification , Rotavirus/genetics , Adenoviridae/isolation & purification
3.
PLoS One ; 19(5): e0303887, 2024.
Article in English | MEDLINE | ID: mdl-38771749

ABSTRACT

BACKGROUND: Norovirus (NoV) is the leading cause of diarrheal disease worldwide and the impact is high in developing countries, including Ethiopia. Moreover, there is a significant and fluctuating global genetic diversity that varies across diverse environments over time. Nevertheless, there is a scarcity of data on the genetic diversity of NoV in Ethiopia. OBJECTIVE: This study was aimed to assess the genetic diversity and distribution of NoVs circulating in the Amhara National Regional State, Ethiopia, by considering all age groups. METHODS: A total of 519 fecal samples were collected from diarrheal patients from May 01/2021 to November 30/ 2021. The fecal samples were screened for the presence of NoVs using real-time RT-PCR by targeting a portion of the major capsid protein coding region. The positive samples were further amplified using conventional RT-PCR, and sequenced. RESULTS: The positivity rate of NoV was (8.9%; 46/519). The detection rate of NoV genogroup II (GII) and genogroup I (GI) was 38 (82.6%) and 8 (17.4%), respectively. Overall, five distinct GII (GII.3, GII.6, GII.10, GII.17, and GII.21) and two GI (GI.3 and GI.5) genotypes were detected. Within the GII types, GII.3 was the predominant (34.2%) followed by GII.21 (15.8%), GII.17 (10.5%), GII.6 and GII.10 each (2.6%). Norovirus GII.21 is reported for the first time in Ethiopia. The genetic diversity and distribution of NoVs were significantly different across the four sampling sits and age groups. The phylogenetic analysis revealed close relatedness of the current strains with published strains from Ethiopia and elsewhere. CONCLUSION: The distribution and genetic diversity of NoV was considerably high, with predominance of non-GII.4 genotypes. The GII.21 genotype is a new add on the growing evidences on the genetic diversity of NoVs in Ethiopia. Future nationwide surveillance studies are necessary to gain comprehensive data in Ethiopia.


Subject(s)
Caliciviridae Infections , Diarrhea , Genetic Variation , Norovirus , Phylogeny , Humans , Norovirus/genetics , Norovirus/isolation & purification , Norovirus/classification , Ethiopia/epidemiology , Diarrhea/virology , Diarrhea/epidemiology , Adult , Adolescent , Child, Preschool , Female , Male , Child , Caliciviridae Infections/epidemiology , Caliciviridae Infections/virology , Infant , Young Adult , Middle Aged , Feces/virology , Genotype , Aged , Infant, Newborn , Gastroenteritis/virology , Gastroenteritis/epidemiology
4.
Molecules ; 29(10)2024 May 14.
Article in English | MEDLINE | ID: mdl-38792166

ABSTRACT

Food-borne transmission is a recognized route for many viruses associated with gastrointestinal, hepatic, or neurological diseases. Therefore, it is essential to identify new bioactive compounds with broad-spectrum antiviral activity to exploit innovative solutions against these hazards. Recently, antimicrobial peptides (AMPs) have been recognized as promising antiviral agents. Indeed, while the antibacterial and antifungal effects of these molecules have been widely reported, their use as potential antiviral agents has not yet been fully investigated. Herein, the antiviral activity of previously identified or newly designed AMPs was evaluated against the non-enveloped RNA viruses, hepatitis A virus (HAV) and murine norovirus (MNV), a surrogate for human norovirus. Moreover, specific assays were performed to recognize at which stage of the viral infection cycle the peptides could function. The results showed that almost all peptides displayed virucidal effects, with about 90% of infectivity reduction in HAV or MNV. However, the decapeptide RiLK1 demonstrated, together with its antibacterial and antifungal properties, a notable reduction in viral infection for both HAV and MNV, possibly through direct interaction with viral particles causing their damage or hindering the recognition of cellular receptors. Hence, RiLK1 could represent a versatile antimicrobial agent effective against various foodborne pathogens including viruses, bacteria, and fungi.


Subject(s)
Antiviral Agents , Foodborne Diseases , Norovirus , Antiviral Agents/pharmacology , Antiviral Agents/chemistry , Animals , Foodborne Diseases/prevention & control , Foodborne Diseases/drug therapy , Foodborne Diseases/virology , Norovirus/drug effects , Humans , Mice , Antimicrobial Peptides/pharmacology , Antimicrobial Peptides/chemistry , Hepatitis A virus/drug effects , Virus Diseases/drug therapy , Microbial Sensitivity Tests
5.
J Clin Virol ; 173: 105697, 2024 Aug.
Article in English | MEDLINE | ID: mdl-38820917

ABSTRACT

BACKGROUND: Molecular syndromic panels can improve rapidity of results and ease clinical laboratory workflow, although caution has been raised for potential false-positive results. Upon implementation of a new panel for infectious diarrhea (BioFire® FilmArray® Gastrointestinal [GI] Panel, bioMérieux) in our clinical laboratory, a higher than expected number of stool samples with norovirus were detected. OBJECTIVES: The goal of this study was to investigate positive percent agreement and the false-positive rate of norovirus detected by the multiplex BioFire GI panel compared to a singleplex commercial assay. STUDY DESIGN: From October 2023 to January 2024, all prospective stool samples with a positive norovirus result by BioFire had melting curves reviewed manually using the BioFire FilmArray Torch System. Stool samples further underwent testing by a supplementary real-time RT-PCR assay (Xpert® Norovirus, Cepheid) for comparative analysis. RESULTS: Of the 50 stool samples with norovirus detected by BioFire, 18 (36 %) tested negative by Xpert (deemed "false-positives"). Furthermore, melting curve analysis revealed nearly all of these samples had atypical melting curve morphologies for the "Noro-1" target on BioFire (16/18, 89 %), which was statistically significant (Odds Ratio 173.2, 95 % CI [22.2, 5326.9], p < 0.0001). Stool samples with multiple pathogens detected by BioFire including norovirus were not more likely to produce false-positive norovirus results (Odds Ratio 1, 95 % CI [0.3, 3.3], p = 1). CONCLUSIONS: Although not described in the manufacturer's Instructions for Use, we propose routine manual review of melting curves for the BioFire GI panel prior to reporting, to mitigate potential false-positive norovirus results.


Subject(s)
Caliciviridae Infections , Feces , Gastroenteritis , Norovirus , Norovirus/isolation & purification , Norovirus/genetics , Humans , Caliciviridae Infections/diagnosis , Caliciviridae Infections/virology , False Positive Reactions , Feces/virology , Prospective Studies , Gastroenteritis/virology , Gastroenteritis/diagnosis , Molecular Diagnostic Techniques/methods , Transition Temperature , Adult , Male , Female , Diarrhea/virology , Diarrhea/diagnosis , Middle Aged , Child, Preschool , Child , Aged , Adolescent , Real-Time Polymerase Chain Reaction/methods , Sensitivity and Specificity , Infant
6.
BMC Infect Dis ; 24(1): 547, 2024 May 31.
Article in English | MEDLINE | ID: mdl-38822241

ABSTRACT

Noroviruses are the second leading cause of death in children under the age of 5 years old. They are responsible for 200 million cases of diarrhoea and 50,000 deaths in children through the word, mainly in low-income countries. The objective of this review was to assess how the prevalence and genetic diversity of noroviruses have been affected by the introduction of rotavirus vaccines in Africa. PubMed, Web of Science and Science Direct databases were searched for articles. All included studies were conducted in Africa in children aged 0 to 5 years old with gastroenteritis. STATA version 16.0 software was used to perform the meta-analysis. The method of Dersimonian and Laird, based on the random effects model, was used for the statistical analyses in order to estimate the pooled prevalence's at a 95% confidence interval (CI). Heterogeneity was assessed by Cochran's Q test using the I2 index. The funnel plot was used to assess study publication bias. A total of 521 studies were retrieved from the databases, and 19 were included in the meta-analysis. The pooled norovirus prevalence's for pre- and post-vaccination rotavirus studies were 15% (95 CI, 15-18) and 13% (95 CI, 09-17) respectively. GII was the predominant genogroup, with prevalence of 87.64% and 91.20% respectively for the pre- and post-vaccination studies. GII.4 was the most frequently detected genotype, with rates of 66.84% and 51.24% respectively for the pre- and post-vaccination studies. This meta-analysis indicates that rotavirus vaccination has not resulted in a decrease in norovirus infections in Africa.


Subject(s)
Caliciviridae Infections , Gastroenteritis , Genetic Variation , Norovirus , Rotavirus Infections , Rotavirus Vaccines , Humans , Rotavirus Vaccines/immunology , Rotavirus Vaccines/administration & dosage , Infant , Africa/epidemiology , Child, Preschool , Caliciviridae Infections/epidemiology , Caliciviridae Infections/prevention & control , Caliciviridae Infections/virology , Norovirus/genetics , Norovirus/classification , Norovirus/immunology , Rotavirus Infections/prevention & control , Rotavirus Infections/epidemiology , Rotavirus Infections/virology , Gastroenteritis/virology , Gastroenteritis/epidemiology , Gastroenteritis/prevention & control , Infant, Newborn , Prevalence , Rotavirus/genetics , Rotavirus/immunology , Rotavirus/classification , Vaccination/statistics & numerical data
7.
Arch Virol ; 169(6): 131, 2024 May 31.
Article in English | MEDLINE | ID: mdl-38819530

ABSTRACT

Noroviruses (NoVs) are the chief cause of acute viral gastroenteritis worldwide. By employing the major capsid protein VP1 of a GII.6 NoV strain as an immunogen, we generated two monoclonal antibodies (mAbs) with wide-spectrum binding activities against NoV genogroup II (GII) VP1 proteins. One mAb (10G7) could bind to native and denatured GII-specific VP1 proteins. The other mAb (10F2) could bind to all tested native GII VP1 proteins, but not to denatured GII.3, GII.4, GII.7, or GII.17 VP1 proteins. Using GII.6/GII.4 fusion proteins, the mAb 10F2 binding region was confirmed to be located in the C-terminal P1 domain. An enzyme-linked immunosorbent assay based on peptides covering the P domain did not detect any binding. Using a panel of VP1 proteins with swapped regions, deletions, and mutations, the mAb 10F2 binding region was determined to be located between residues 496 and 513. However, the residue(s) responsible for its varied binding affinity for different denatured GII VP1 proteins remain to be identified. In summary, two NoV GII-specific cross-reactive mAbs were generated, and their binding regions were determined. Our results might facilitate the detection and immunogenic study of NoVs.


Subject(s)
Antibodies, Monoclonal , Antibodies, Viral , Capsid Proteins , Epitopes , Norovirus , Norovirus/genetics , Norovirus/immunology , Antibodies, Monoclonal/immunology , Capsid Proteins/immunology , Capsid Proteins/genetics , Capsid Proteins/chemistry , Epitopes/immunology , Epitopes/genetics , Antibodies, Viral/immunology , Animals , Antigens, Viral/immunology , Antigens, Viral/genetics , Mice , Humans , Caliciviridae Infections/virology , Caliciviridae Infections/immunology , Mice, Inbred BALB C , Epitope Mapping , Cross Reactions
8.
PLoS Pathog ; 20(5): e1011961, 2024 May.
Article in English | MEDLINE | ID: mdl-38701091

ABSTRACT

Noroviruses (NoVs) are a leading cause of viral gastroenteritis. Despite global clinical relevance, our understanding of how host factors, such as antiviral cytokines interferons (IFNs), modulate NoV population dynamics is limited. Murine NoV (MNoV) is a tractable in vivo model for the study of host regulation of NoV. A persistent strain of MNoV, CR6, establishes a reservoir in intestinal tuft cells for chronic viral shedding in stool. However, the influence of host innate immunity and permissive cell numbers on viral population dynamics is an open question. We generated a pool of 20 different barcoded viruses (CR6BC) by inserting 6-nucleotide barcodes at the 3' position of the NS4 gene and used this pool as our viral inoculum for in vivo infections of different mouse lines. We found that over the course of persistent CR6 infection, shed virus was predominantly colon-derived, and viral barcode richness decreased over time irrespective of host immune status, suggesting that persistent infection involves a series of reinfection events. In mice lacking the IFN-λ receptor, intestinal barcode richness was enhanced, correlating with increased viral intestinal replication. IL-4 treatment, which increases tuft cell numbers, also increased barcode richness, indicating the abundance of permissive tuft cells to be a bottleneck during CR6 infection. In mice lacking type I IFN signaling (Ifnar1-/-) or all IFN signaling (Stat1-/-), barcode diversity at extraintestinal sites was dramatically increased, implicating different IFNs as critical bottlenecks at specific tissue sites. Of interest, extraintestinal barcodes were overlapping but distinct from intestinal barcodes, indicating that disseminated virus represents a distinct viral population than that replicating in the intestine. Barcoded viruses are a valuable tool to explore the influence of host factors on viral diversity in the context of establishment and maintenance of infection as well as dissemination and have provided important insights into how NoV infection proceeds in immunocompetent and immunocompromised hosts.


Subject(s)
Caliciviridae Infections , Interferons , Norovirus , Animals , Norovirus/physiology , Caliciviridae Infections/virology , Caliciviridae Infections/immunology , Mice , Interferons/metabolism , Persistent Infection/virology , Persistent Infection/immunology , Mice, Inbred C57BL , Intestinal Mucosa/virology , Intestinal Mucosa/immunology , Gastroenteritis/virology , Virus Replication , Mice, Knockout , Immunity, Innate , Virus Shedding
9.
Viruses ; 16(5)2024 05 14.
Article in English | MEDLINE | ID: mdl-38793656

ABSTRACT

Human norovirus (HuNoV) is a leading global cause of viral gastroenteritis, contributing to numerous outbreaks and illnesses annually. However, conventional cell culture systems cannot support the cultivation of infectious HuNoV, making its detection and study in food and water matrices particularly challenging. Recent advancements in HuNoV research, including the emergence of models such as human intestinal enteroids (HIEs) and zebrafish larvae/embryo, have significantly enhanced our understanding of HuNoV pathogenesis. This review provides an overview of current methods employed for HuNoV detection in food and water, along with their associated limitations. Furthermore, it explores the potential applications of the HIE and zebrafish larvae/embryo models in detecting infectious HuNoV within food and water matrices. Finally, this review also highlights the need for further optimization and exploration of these models and detection methods to improve our understanding of HuNoV and its presence in different matrices, ultimately contributing to improved intervention strategies and public health outcomes.


Subject(s)
Caliciviridae Infections , Gastroenteritis , Norovirus , Zebrafish , Animals , Humans , Caliciviridae Infections/virology , Caliciviridae Infections/diagnosis , Food Microbiology/methods , Gastroenteritis/virology , Norovirus/isolation & purification , Norovirus/genetics , Water Microbiology , Zebrafish/virology , Disease Models, Animal
10.
Water Res ; 257: 121713, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38733963

ABSTRACT

Pepper mild mottle virus (PMMoV) has been proposed as a potential indicator of human enteric viruses in environmental water and for viral removal during drinking water treatment. To investigate the occurrence and present forms of PMMoV and quantitative relations to norovirus GII and rotavirus A (RVA) in surface waters, 147 source water samples were collected from 21 drinking water treatment plants (DWTPs) in Japan between January 2018 and January 2021, and the concentrations of viruses in suspended and dissolved fractions were measured using real-time RT-PCR. PMMoV was detected in 81-100 % of samples in each sample month and observed concentrations ranged from 3.0 to 7.0 log10 copies/L. The concentrations of PMMoV were higher in dissolved fraction compared to suspended fractions, while different partitioning was observed for NoV GII depending on seasons. The concentrations of PMMoV were basically higher than those of norovirus GII (1.9-5.3 log10 copies/L) and RVA (1.9-6.6 log10 copies/L), while in 18 samples, RVA presented higher concentrations than PMMoV. Partial regions of VP7, VP4, and VP6 of the RVA in the 18 samples were amplified using nested PCR, and the genotypes were determined using an amplicon-based next-generation sequencing approach. We found that these source water samples included not only human RVA but also various animal RVA and high genetic diversity due to the existence of animal RVA was associated with a higher RVA concentration than PMMoV. Our findings suggest that PMMoV can be used as an indicator of norovirus GII and human RVA in drinking water sources and that the indicator performance should be evaluated by comparing to zoonotic viruses as well as human viruses.


Subject(s)
Drinking Water , Norovirus , Rotavirus , Tobamovirus , Water Purification , Norovirus/isolation & purification , Norovirus/genetics , Rotavirus/isolation & purification , Rotavirus/genetics , Drinking Water/virology , Tobamovirus/isolation & purification , Tobamovirus/genetics , Humans , Japan
11.
mSphere ; 9(5): e0010524, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38712930

ABSTRACT

Wastewater surveillance can reveal population-level infectious disease burden and emergent public health threats can be reliably assessed through wastewater surveillance. While molecular methods for wastewater monitoring of microorganisms have traditionally relied on PCR-based approaches, next-generation sequencing (NGS) can provide deeper insights via genomic analyses of multiple diverse pathogens. We conducted a year-long sequencing surveillance of 1,408 composite wastewater samples collected from 12 neighborhood-level access points in the greater Tempe area, Arizona, USA, and show that variation in wastewater viruses is driven by seasonal time and location. The temporal dynamics of viruses in wastewater were influenced cyclically, with the most dissimilarity between samples 23 weeks apart (i.e., winter vs summer, spring vs fall). We identified diverse urinary and enteric viruses including polyomaviruses, astroviruses, and noroviruses, and showed that their genotypes/subtypes shifted across seasons. We show that while wastewater data of certain respiratory viruses like severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strongly correlate with clinical case rates, laboratory-reported case incidences were discordant with surges of high viral load in wastewater for other viruses like human coronavirus 229E. These results demonstrate the utility of wastewater sequencing for informing decision-making in public health.IMPORTANCEWastewater surveillance can provide insights into the spread of pathogens in communities. Advances in next-generation sequencing (NGS) methodologies allow for more precise detection of viruses in wastewater. Long-term wastewater surveillance of viruses is an important tool for public health preparedness. This system can act as a public health observatory that gives real-time early warning for infectious disease outbreaks and improved response times.


Subject(s)
High-Throughput Nucleotide Sequencing , Seasons , Wastewater , Wastewater/virology , Arizona/epidemiology , Humans , Viruses/genetics , Viruses/isolation & purification , Viruses/classification , SARS-CoV-2/genetics , SARS-CoV-2/isolation & purification , Wastewater-Based Epidemiological Monitoring , Genotype , Polyomavirus/genetics , Polyomavirus/isolation & purification , Polyomavirus/classification , Genomics/methods , Norovirus/genetics , Norovirus/isolation & purification , Norovirus/classification , Enterovirus/genetics , Enterovirus/isolation & purification , Enterovirus/classification , COVID-19/epidemiology , COVID-19/virology
12.
Virulence ; 15(1): 2360133, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38803081

ABSTRACT

Norovirus (NV) infection causes acute gastroenteritis in children and adults. Upon infection with NV, specific CD8+ T cells, which play an important role in anti-infective immunity, are activated in the host. Owing to the NV's wide genotypic variability, it is challenging to develop vaccines with cross-protective abilities against infection. To aid effective vaccine development, we examined specific CD8+ T-cell responses towards viral-structural protein (VP) epitopes, which enable binding to host susceptibility receptors. We isolated peripheral blood mononuclear cells from 196 participants to screen and identify predominant core peptides towards NV main and small envelope proteins using ex vivo and in vitro intracellular cytokine staining assays. Human leukocyte antigen (HLA) restriction characteristics were detected using next-generation sequencing. Three conservative immunodominant VP-derived CD8+ T-cell epitopes, VP294-102 (TDAARGAIN), VP2153-161 (RGPSNKSSN), and VP1141-148 (FPHIIVDV), were identified and restrictively presented by HLA-Cw * 0102, HLA-Cw * 0702, and HLA-A *1101 alleles, separately. Our findings provide useful insights into the development of future vaccines and treatments for NV infection.


Subject(s)
CD8-Positive T-Lymphocytes , Caliciviridae Infections , Capsid Proteins , Epitopes, T-Lymphocyte , Gastroenteritis , Norovirus , Humans , CD8-Positive T-Lymphocytes/immunology , Capsid Proteins/immunology , Capsid Proteins/genetics , Caliciviridae Infections/immunology , Caliciviridae Infections/virology , Norovirus/immunology , Norovirus/genetics , Adult , Epitopes, T-Lymphocyte/immunology , Epitopes, T-Lymphocyte/genetics , Male , Gastroenteritis/virology , Gastroenteritis/immunology , Female , Middle Aged , Young Adult , Child , Adolescent , Leukocytes, Mononuclear/immunology , Immunodominant Epitopes/immunology , Child, Preschool , Aged
13.
Int J Mol Sci ; 25(7)2024 Mar 23.
Article in English | MEDLINE | ID: mdl-38612426

ABSTRACT

This paper describes the effects of murine norovirus (MNV) infection on oxidative stress and histopathological changes in mice. This study uses histopathological assays, enzymatic and non-enzymatic antioxidant markers, and total oxidative status and capacity (TOS, TAC). The results suggest that MNV infection can lead to significant changes with respect to the above-mentioned parameters in various organs. Specifically, reduced superoxide dismutase (SOD), Mn superoxide dismutase (MnSOD), catalase (CAT), and glutathione reductase (GR) activities were observed in liver tissues, while higher MnSOD activity was observed in kidney tissues of MNV-infected mice when compared to the control. GR activity was lower in all tissues of MNV-infected mice tested, with the exception of lung tissue. This study also showed that norovirus infection led to increased TOS levels in the brain and liver and TAC levels in the brain, while TOS levels were significantly reduced in the kidneys. These changes may be due to the production of reactive oxygen species (ROS) caused by the viral infection. ROS can damage cells and contribute to oxidative stress. These studies help us to understand the pathogenesis of MNV infection and its potential effects on oxidative stress and histopathological changes in mice, and pave the way for further studies of the long-term effects of MNV infection.


Subject(s)
Norovirus , Oxidative Stress , Animals , Mice , Reactive Oxygen Species , Antioxidants , Biological Assay
14.
Int J Mol Sci ; 25(7)2024 Mar 23.
Article in English | MEDLINE | ID: mdl-38612429

ABSTRACT

Norovirus (NoV) genogroup II, polymerase type P31, capsid genotype 4, Sydney_2012 variant (GII.P31/GII.4_Sydney_2012) has been circulating at high levels for over a decade, raising the question of whether this strain is undergoing molecular alterations without demonstrating a substantial phylogenetic difference. Here, we applied next-generation sequencing to learn more about the genetic diversity of 14 GII.P31/GII.4_Sydney_2012 strains that caused epidemics in a specific region of Japan, with 12 from Kyoto and 2 from Shizuoka, between 2012 and 2022, with an emphasis on amino acid (aa) differences in all three ORFs. We found numerous notable aa alterations in antigenic locations in the capsid region (ORF2) as well as in other ORFs. In all three ORFs, earlier strains (2013-2016) remained phylogenetically distinct from later strains (2019-2022). This research is expected to shed light on the evolutionary properties of dominating GII.P31/GII.4_Sydney_2012 strains, which could provide useful information for viral diarrhea prevention and treatment.


Subject(s)
Evolution, Molecular , Norovirus , Japan/epidemiology , Phylogeny , Biological Evolution , Capsid Proteins/genetics , Norovirus/genetics
15.
Lab Anim (NY) ; 53(4): 87, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38570667
16.
Viruses ; 16(4)2024 04 22.
Article in English | MEDLINE | ID: mdl-38675994

ABSTRACT

We investigated the molecular epidemiology of human norovirus (HuNoV) in all age groups using samples from April 2019 to March 2023, before and after the COVID-19 countermeasures were implemented. GII.2[P16] and GII.4[P31], the prevalent strains in Japan before COVID-19 countermeasures, remained prevalent during the COVID-19 pandemic, except from April to November 2020; in 2021, the prevalence of GII.2[P16] increased among children. Furthermore, there was an increase in the prevalence of GII.4[P16] after December 2022. Phylogenetic analysis of GII.P31 RdRp showed that some strains detected in 2022 belonged to a different cluster of other strains obtained during the present study period, suggesting that HuNoV strains will evolve differently even if they have the same type of RdRp. An analysis of the amino acid sequence of VP1 showed that some antigenic sites of GII.4[P16] were different from those of GII.4[P31]. The present study showed high infectivity of HuNoV despite the COVID-19 countermeasures and revealed changes in the prevalent genotypes and mutations of each genotype. In the future, we will investigate whether GII.4[P16] becomes more prevalent, providing new insights by comparing the new data with those analyzed in the present study.


Subject(s)
COVID-19 , Caliciviridae Infections , Genotype , Norovirus , Phylogeny , Humans , Norovirus/genetics , Norovirus/classification , Japan/epidemiology , Caliciviridae Infections/epidemiology , Caliciviridae Infections/virology , COVID-19/epidemiology , COVID-19/virology , COVID-19/prevention & control , Child , Child, Preschool , Infant , Adult , Adolescent , Middle Aged , Young Adult , SARS-CoV-2/genetics , SARS-CoV-2/classification , Aged , Female , Male , Prevalence , Molecular Epidemiology , Infant, Newborn , Aged, 80 and over , Gastroenteritis/virology , Gastroenteritis/epidemiology , Gastroenteritis/prevention & control , Feces/virology
17.
Article in English | MEDLINE | ID: mdl-38656038

ABSTRACT

Noroviruses are highly infectious, genetically diverse viruses. Global outbreaks occur frequently, making molecular surveillance important for infection monitoring. This cross-sectional descriptive study aimed to monitor cases of norovirus gastroenteritis in the Brazilian Amazon. Fecal samples were tested by immunoenzymatic assay, RT-PCR and genetic sequencing for the ORF1/ORF2 and protease regions. Bayesian inference with a molecular clock was employed to construct the phylogeny. The norovirus prevalence was 25.8%, with a higher positivity rate among children aged 0-24 months. Genogroup GII accounted for 98.1% of the sequenced samples, while GI accounted for 1.9% of them. The GII.P16/GII.4 genotype was the most prevalent, with an evolution rate of 2.87x10-3 and TMRCA estimated in 2012. This study demonstrates that norovirus is a primary causative agent of gastroenteritis and provides data on viral genetic diversity that may facilitate infection surveillance and vaccine development.


Subject(s)
Caliciviridae Infections , Feces , Gastroenteritis , Genotype , Norovirus , Phylogeny , Norovirus/genetics , Norovirus/classification , Brazil/epidemiology , Humans , Caliciviridae Infections/epidemiology , Caliciviridae Infections/virology , Infant , Gastroenteritis/virology , Gastroenteritis/epidemiology , Child, Preschool , Cross-Sectional Studies , Feces/virology , Infant, Newborn , Child , Female , Male , Adolescent , Adult , RNA, Viral/genetics , Prevalence , Young Adult , Reverse Transcriptase Polymerase Chain Reaction , Middle Aged , Aged , Genetic Variation
18.
Phys Chem Chem Phys ; 26(17): 13094-13105, 2024 May 01.
Article in English | MEDLINE | ID: mdl-38628116

ABSTRACT

Collision induced unfolding (CIU) is a method used with ion mobility mass spectrometry to examine protein structures and their stability. Such experiments yield information about higher order protein structures, yet are unable to provide details about the underlying processes. That information can however be provided using molecular dynamics simulations. Here, we investigate the gas-phase unfolding of norovirus capsid dimers from the Norwalk and Kawasaki strains by employing molecular dynamics simulations over a range of temperatures, representing different levels of activation, together with CIU experiments. The dimers have highly similar structures, but their CIU reveals different stability that can be explained by the different dynamics that arises in response to the activation seen in the simulations, including a part of the sequence with previously observed strain-specific dynamics in solution. Our findings show how similar protein variants can be examined using mass spectrometric techniques in conjunction with atomistic molecular dynamics simulations to reveal differences in stability as well as differences in how and where unfolding takes place upon activation.


Subject(s)
Capsid Proteins , Molecular Dynamics Simulation , Norovirus , Protein Unfolding , Norovirus/chemistry , Capsid Proteins/chemistry , Capsid Proteins/metabolism , Protein Stability , Capsid/chemistry , Protein Multimerization
19.
Emerg Infect Dis ; 30(5): 1026-1029, 2024 May.
Article in English | MEDLINE | ID: mdl-38666659

ABSTRACT

Norovirus is a major cause of acute gastroenteritis; GII.4 is the predominant strain in humans. Recently, 2 new GII.4 variants, Hong Kong 2019 and San Francisco 2017, were reported. Characterization using GII.4 monoclonal antibodies and serum demonstrated different antigenic profiles for the new variants compared with historical variants.


Subject(s)
Antigens, Viral , Caliciviridae Infections , Gastroenteritis , Norovirus , Humans , Norovirus/genetics , Norovirus/immunology , Norovirus/classification , Hong Kong/epidemiology , Caliciviridae Infections/virology , Caliciviridae Infections/epidemiology , Caliciviridae Infections/immunology , Gastroenteritis/virology , Gastroenteritis/epidemiology , Antigens, Viral/immunology , Antigens, Viral/genetics , San Francisco/epidemiology , Antibodies, Viral/blood , Antibodies, Viral/immunology , Genotype , Phylogeny , Antibodies, Monoclonal/immunology
20.
J Virol ; 98(5): e0019724, 2024 May 14.
Article in English | MEDLINE | ID: mdl-38593321

ABSTRACT

Noroviruses are major causative agents of acute nonbacterial gastroenteritis in humans. There are neither antiviral therapeutic agents nor vaccines for noroviruses at this time. To evaluate the potential usefulness of two previously isolated human monoclonal antibody fragments, CV-1A1 and CV-2F5, we first conducted a single-particle analysis to determine the cryo-electron microscopy structure of virus-like particles (VLPs) from the genogroup I genotype 4 (GI.4) Chiba strain uniformly coated with CV-1A1 fragments. The results revealed that the GI.4-specific CV-1A1 antibody bound to the P2 subdomain, in which amino acids are less conserved and variable. Interestingly, a part of the CV-1A1 intrudes into the histo-blood group antigen-binding site, suggesting that this antibody might exert neutralizing activity. Next, we determined the crystal structure of the protruding (P) domain of the capsid protein in the complex form with the CV-2F5 antibody fragment. Consistent with the cross-reactivity, the CV-2F5 bound to the P1 subdomain, which is rich in amino acids conserved among the GI strains, and moreover induced a disruption of Chiba VLPs. These results suggest that the broadly reactive CV-2F5 antibody can be used as both a universal detection reagent and an antiviral drug for GI noroviruses. IMPORTANCE: We conducted the structural analyses of the VP1 protein from the GI.4 Chiba norovirus to identify the binding sites of the previously isolated human monoclonal antibodies CV-1A1 and CV-2F5. The cryo-electron microscopy of the Chiba virus-like particles (VLPs) complexed with the Fv-clasp forms of GI.4-specific CV-1A1 revealed that this antibody binds to the highly variable P2 subdomain, suggesting that this antibody may have neutralizing ability against the GI.4 strains. X-ray crystallography revealed that the CV-2F5 antibody bound to the P1 subdomain, which is rich in conserved amino acids. This result is consistent with the ability of the CV-2F5 antibody to react with a wide variety of GI norovirus strains. It is also found that the CV-2F5 antibody caused a disruption of VLPs. Our findings, together with previous reports on the structures of VP1 proteins and VLPs, are expected to open a path for the structure-based development of antivirals and vaccines against norovirus disease.


Subject(s)
Antibodies, Monoclonal , Antibodies, Viral , Norovirus , Humans , Antibodies, Monoclonal/immunology , Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , Binding Sites , Capsid Proteins/immunology , Capsid Proteins/chemistry , Capsid Proteins/metabolism , Cryoelectron Microscopy/methods , Crystallography, X-Ray , Models, Molecular , Norovirus/immunology
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