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1.
Nature ; 623(7989): 1001-1008, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37968393

ABSTRACT

Cyclic oligonucleotide-based antiphage signalling systems (CBASS) protect prokaryotes from viral (phage) attack through the production of cyclic oligonucleotides, which activate effector proteins that trigger the death of the infected host1,2. How bacterial cyclases recognize phage infection is not known. Here we show that staphylococcal phages produce a structured RNA transcribed from the terminase subunit genes, termed CBASS-activating bacteriophage RNA (cabRNA), which binds to a positively charged surface of the CdnE03 cyclase and promotes the synthesis of the cyclic dinucleotide cGAMP to activate the CBASS immune response. Phages that escape the CBASS defence harbour mutations that lead to the generation of a longer form of the cabRNA that cannot activate CdnE03. As the mammalian cyclase OAS1 also binds viral double-stranded RNA during the interferon response, our results reveal a conserved mechanism for the activation of innate antiviral defence pathways.


Subject(s)
Bacteria , Nucleotidyltransferases , RNA, Viral , Staphylococcus Phages , Animals , 2',5'-Oligoadenylate Synthetase/metabolism , Bacteria/enzymology , Bacteria/immunology , Evolution, Molecular , Immunity, Innate , Nucleotidyltransferases/metabolism , Oligonucleotides/immunology , Oligonucleotides/metabolism , RNA, Viral/immunology , RNA, Viral/metabolism , Signal Transduction/immunology , Staphylococcus Phages/genetics , Staphylococcus Phages/immunology
2.
Muscle Nerve ; 64(4): 404-412, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34231920

ABSTRACT

Spinal muscular atrophy (SMA) is an inherited lower motor neuron disease. SMA occurs secondary to alterations in the survival motor neuron 1 gene (SMN1), which is the main driver of SMN protein production. The severity of the disease is determined by the number of copies of the SMN2 gene, which is a homolog to SMN1 but not as efficient in protein production. Three medications have recently been approved for the treatment of SMA. Nusinersen is an intrathecal antisense oligonucleotide that alters SMN2 pre-mRNA, onasemnogene abeparvovec-xioi is an intravenous SMN1 gene replacement therapy, and risdiplam is an oral small molecule splicing modifier of SMN2. No head-to-head studies have been conducted comparing these medications, so selection of one of these medications for an individual with SMA can be challenging. In this article we outline the efficacy, safety, and other pertinent factors to consider when selecting a therapy for an individual with SMA. The age of the individual and comorbidities, such as liver or kidney disease, help guide treatment choices. All three of these medications are efficacious, and early initiation is critical for obtaining the best outcomes.


Subject(s)
Muscular Atrophy, Spinal/drug therapy , Neuromuscular Agents/administration & dosage , Oligonucleotides, Antisense/administration & dosage , Oligonucleotides/administration & dosage , Animals , Azo Compounds/administration & dosage , Azo Compounds/immunology , Biological Products/administration & dosage , Biological Products/immunology , Humans , Muscular Atrophy, Spinal/epidemiology , Muscular Atrophy, Spinal/immunology , Neuromuscular Agents/immunology , Oligonucleotides/immunology , Oligonucleotides, Antisense/immunology , Pyrimidines/administration & dosage , Pyrimidines/immunology , Recombinant Fusion Proteins/administration & dosage , Recombinant Fusion Proteins/immunology , Treatment Outcome
3.
J Immunother Cancer ; 9(6)2021 06.
Article in English | MEDLINE | ID: mdl-34083419

ABSTRACT

BACKGROUND: CMP-001, also known as vidutolimod, is a virus-like particle containing a TLR9 agonist that is showing promise in early clinical trials. Our group previously demonstrated that the immunostimulatory effects of CMP-001 are dependent on an anti-Qß antibody response which results in opsonization of CMP-001 and uptake by plasmacytoid dendritic cells (pDCs) that then produce interferon (IFN)-α. IFN-α then leads to an antitumor T-cell response that is responsible for the in vivo efficacy of CMP-001. Here, we explore mechanisms by which the initial effects of CMP-001 on pDCs activate other cells that can contribute to development of an antitumor T-cell response. METHODS: Uptake of CMP-001 by various peripheral blood mononuclear cell (PBMC) populations and response to anti-Qß-coated CMP-001 were evaluated by flow cytometry and single-cell RNA sequencing. Purified monocytes were treated with anti-Qß-coated CMP-001 or recombinant IFN-α to evaluate direct and secondary effects of anti-Qß-coated CMP-001 on monocytes. RESULTS: Monocytes had the highest per cell uptake of anti-Qß-coated CMP-001 with lower levels of uptake by pDCs and other cell types. Treatment of PBMCs with anti-Qß-coated CMP-001 induced upregulation of IFN-responsive genes including CXCL10, PDL1, and indoleamine-2,3-dioxygenase (IDO) expression by monocytes. Most of the impact of anti-Qß-coated CMP-001 on monocytes was indirect and mediated by IFN-α, but uptake of anti-Qß-coated CMP-001 altered the monocytic response to IFN-α and resulted in enhanced expression of PDL1, IDO, and CD80 and suppressed expression of CXCL10. These changes included an enhanced ability to induce autologous CD4 T-cell proliferation. CONCLUSIONS: Anti-Qß-coated CMP-001 induces IFN-α production by pDCs which has secondary effects on a variety of cells including monocytes. Uptake of anti-Qß-coated CMP-001 by monocytes alters their response to IFN-α, resulting in enhanced expression of PDL1, IDO and CD80 and suppressed expression of CXCL10. Despite aspects of an immunosuppressive phenotype, these monocytes demonstrated increased ability to augment autologous CD4 T-cell proliferation. These findings shed light on the complexity of the mechanism of action of anti-Qß-coated CMP-001 and provide insight into pathways that may be targeted to further enhance the efficacy of this novel approach to immunotherapy.


Subject(s)
Dendritic Cells/immunology , Interferon-alpha/metabolism , Leukocytes, Mononuclear/immunology , Oligonucleotides/pharmacology , Toll-Like Receptor 9/agonists , B7-H1 Antigen/genetics , Chemokine CXCL10/genetics , Gene Expression Profiling , Gene Expression Regulation/drug effects , Humans , Indoleamine-Pyrrole 2,3,-Dioxygenase/genetics , Oligonucleotides/immunology , Sequence Analysis, RNA , Signal Transduction , Single-Cell Analysis
4.
Poult Sci ; 99(9): 4360-4372, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32867980

ABSTRACT

The immunological immaturity of the innate immune system during the first-week post-hatch enables pathogens to infect chickens, leading to the death of the animals. Current preventive solutions to improve the resistance of chicks to infections include vaccination, breeding, and sanitation. Other prophylactic solutions have been investigated, such as the stimulation of animal health with immunostimulants. Recent studies showed that administration of immune-modulators to one-day-old chicks, or in ovo, significantly reduces mortality in experimental bacterial or viral infection challenge models. Owing to a lack of molecular biomarkers required to evaluate chicken immune responses and assess the efficacy of vaccines or immune-modulators, challenge models are still used. One way to reduce challenge experiments is to define molecular signatures through omics approaches, resulting in new methodologies to rapidly screen candidate molecules or vaccines. This study aims at identifying a dual transcriptomics and metabolomics blood signature after administration of CpG-ODN (cytosine-phosphate-guanine oligodeoxynucleotides), a reference immune-stimulatory molecule. A clinical study was conducted with chicks and transcriptomics and metabolomics analyses were performed on whole-blood and plasma samples, respectively. Differentially expressed genes and metabolites with different abundance were identified in chicks treated with CpG-ODN. The results showed that CpG-ODN activated the innate immune system, within hours after administration, and its effect lasted over time, as metabolomics and transcriptomics profiles still varied 6 D after administration. In conclusion, through an integrated clinical omics approach, we deciphered in part the mode of action of CpG-ODN in post-hatch chicks.


Subject(s)
Chickens , Metabolome , Oligodeoxyribonucleotides , Transcriptome , Adjuvants, Immunologic/pharmacology , Animals , Animals, Newborn/immunology , Oligodeoxyribonucleotides/immunology , Oligodeoxyribonucleotides/pharmacology , Oligonucleotides/immunology , Oligonucleotides/pharmacology
5.
Nat Microbiol ; 5(12): 1608-1615, 2020 12.
Article in English | MEDLINE | ID: mdl-32839535

ABSTRACT

Cyclic-oligonucleotide-based anti-phage signalling systems (CBASS) are a family of defence systems against bacteriophages (hereafter phages) that share ancestry with the cGAS-STING innate immune pathway in animals. CBASS systems are composed of an oligonucleotide cyclase, which generates signalling cyclic oligonucleotides in response to phage infection, and an effector that is activated by the cyclic oligonucleotides and promotes cell death. Cell death occurs before phage replication is completed, therefore preventing the spread of phages to nearby cells. Here, we analysed 38,000 bacterial and archaeal genomes and identified more than 5,000 CBASS systems, which have diverse architectures with multiple signalling molecules, effectors and ancillary genes. We propose a classification system for CBASS that groups systems according to their operon organization, signalling molecules and effector function. Four major CBASS types were identified, sharing at least six effector subtypes that promote cell death by membrane impairment, DNA degradation or other means. We observed evidence of extensive gain and loss of CBASS systems, as well as shuffling of effector genes between systems. We expect that our classification and nomenclature scheme will guide future research in the developing CBASS field.


Subject(s)
Bacteria/immunology , Bacteria/virology , Bacterial Proteins/immunology , Bacteriophages/physiology , Oligonucleotides/immunology , Bacteria/classification , Bacteria/genetics , Bacterial Proteins/genetics , Bacteriophages/genetics , Genome, Bacterial , Immunity, Innate , Oligonucleotides/genetics , Phylogeny , Signal Transduction
6.
Proc Natl Acad Sci U S A ; 117(30): 17543-17550, 2020 07 28.
Article in English | MEDLINE | ID: mdl-32669433

ABSTRACT

Highly heterogenous cancers, such as triple-negative breast cancer (TNBC), remain challenging immunotherapeutic targets. Herein, we describe the synthesis and evaluation of immunotherapeutic liposomal spherical nucleic acids (SNAs) for TNBC therapy. The SNAs comprise immunostimulatory oligonucleotides (CpG-1826) as adjuvants and encapsulate lysates derived from TNBC cell lines as antigens. The resulting nanostructures (Lys-SNAs) enhance the codelivery of adjuvant and antigen to immune cells when compared to simple mixtures of lysates with linear oligonucleotides both in vitro and in vivo, and reduce tumor growth relative to simple mixtures of lysate and CpG-1826 (Lys-Mix) in both Py230 and Py8119 orthotopic syngeneic mouse models of TNBC. Furthermore, oxidizing TNBC cells prior to lysis and incorporation into SNAs (OxLys-SNAs) significantly increases the activation of dendritic cells relative to their nonoxidized counterparts. When administered peritumorally in vivo in the EMT6 mouse mammary carcinoma model, OxLys-SNAs significantly increase the population of cytotoxic CD8+ T cells and simultaneously decrease the population of myeloid derived suppressor cells (MDSCs) within the tumor microenvironment, when compared with Lys-SNAs and simple mixtures of oxidized lysates with CpG-1826. Importantly, animals administered OxLys-SNAs exhibit significant antitumor activity and prolonged survival relative to all other treatment groups, and resist tumor rechallenge. Together, these results show that the way lysates are processed and packaged has a profound impact on their immunogenicity and therapeutic efficacy. Moreover, this work points toward the potential of oxidized tumor cell lysate-loaded SNAs as a potent class of immunotherapeutics for cancers lacking common therapeutic targets.


Subject(s)
Antigens, Neoplasm/immunology , Immunomodulation , Nucleic Acids/immunology , Triple Negative Breast Neoplasms/immunology , Adjuvants, Immunologic , Animals , Cancer Vaccines/administration & dosage , Cancer Vaccines/immunology , Cell Line, Tumor , Dendritic Cells/immunology , Dendritic Cells/metabolism , Female , Humans , Immunotherapy , Mice , Oligodeoxyribonucleotides/immunology , Oligonucleotides/immunology , Oxidation-Reduction , Treatment Outcome , Triple Negative Breast Neoplasms/drug therapy , Triple Negative Breast Neoplasms/metabolism , Triple Negative Breast Neoplasms/pathology
7.
Proc Natl Acad Sci U S A ; 117(24): 13428-13436, 2020 06 16.
Article in English | MEDLINE | ID: mdl-32493746

ABSTRACT

The recent advent of immune checkpoint inhibitor (CPI) antibodies has revolutionized many aspects of cancer therapy, but the efficacy of these breakthrough therapeutics remains limited, as many patients fail to respond for reasons that still largely evade understanding. An array of studies in human patients and animal models has demonstrated that local signaling can generate strongly immunosuppressive microenvironments within tumors, and emerging evidence suggests that delivery of immunostimulatory molecules into tumors can have therapeutic effects. Nanoparticle formulations of these cargoes offer a promising way to maximize their delivery and to enhance the efficacy of checkpoint inhibitors. We developed a modular nanoparticle system capable of encapsulating an array of immunostimulatory oligonucleotides that, in some cases, greatly increase their potency to activate inflammatory signaling within immune cells in vitro. We hypothesized that these immunostimulatory nanoparticles could suppress tumor growth by activating similar signaling in vivo, and thereby also improve responsiveness to immune checkpoint inhibitor antibody therapies. We found that our engineered nanoparticles carrying a CpG DNA ligand of TLR9 can suppress tumor growth in several animal models of various cancers, resulting in an abscopal effect on distant tumors, and improving responsiveness to anti-CTLA4 treatment with combinatorial effects after intratumoral administration. Moreover, by incorporating tumor-homing peptides, immunostimulatory nucleotide-bearing nanoparticles facilitate antitumor efficacy after systemic intravenous (i.v.) administration.


Subject(s)
Adjuvants, Immunologic , Antineoplastic Agents, Immunological/therapeutic use , Immunotherapy/methods , Nanoparticles , Oligonucleotides/therapeutic use , Animals , CTLA-4 Antigen/antagonists & inhibitors , Cell Line , Drug Delivery Systems , Drug Therapy, Combination , Inflammation , Macrophages/drug effects , Macrophages/immunology , Mice , Nanoparticles/chemistry , Neoplasms, Experimental/therapy , Oligonucleotides/chemistry , Oligonucleotides/immunology
8.
Int J Mol Sci ; 21(4)2020 Feb 19.
Article in English | MEDLINE | ID: mdl-32092996

ABSTRACT

Molecular recognition, the specific interaction between molecules by a combination of physical forces, has been a subject of scientific investigation for decades [...].


Subject(s)
Antibodies/immunology , Antigen-Antibody Complex/immunology , Amino Acid Sequence , Antibodies/chemistry , Antigen-Antibody Complex/chemistry , Oligonucleotides/chemistry , Oligonucleotides/immunology , Peptides/immunology , Protein Binding/immunology , Protein Conformation
9.
Front Immunol ; 11: 619896, 2020.
Article in English | MEDLINE | ID: mdl-33643301

ABSTRACT

The presence of pathogen-specific antibodies in an individual's blood-sample is used as an indication of previous exposure and infection to that specific pathogen (e.g., virus or bacterium). Measurement of the diagnostic antibodies is routinely achieved using solid phase immuno-assays such as ELISA tests and western blots. Here, we describe a sero-diagnostic approach based on phage-display of epitope arrays we term "Domain-Scan". We harness Next-generation sequencing (NGS) to measure the serum binding to dozens of epitopes derived from HIV-1 and HCV simultaneously. The distinction of healthy individuals from those infected with either HIV-1 or HCV, is modeled as a machine-learning classification problem, in which each determinant ("domain") is considered as a feature, and its NGS read-out provides values that correspond to the level of determinant-specific antibodies in the sample. We show that following training of a machine-learning model on labeled examples, we can very accurately classify unlabeled samples and pinpoint the domains that contribute most to the classification. Our experimental/computational Domain-Scan approach is general and can be adapted to other pathogens as long as sufficient training samples are provided.


Subject(s)
Communicable Diseases/diagnosis , HIV Antibodies/blood , HIV Core Protein p24/immunology , HIV Envelope Protein gp160/immunology , HIV Infections/diagnosis , Hepatitis C Antibodies/blood , Hepatitis C Antigens/immunology , Hepatitis C/diagnosis , Machine Learning , Peptide Library , Serologic Tests/methods , AIDS Serodiagnosis/methods , Amino Acid Sequence , Antigen-Antibody Reactions , Base Sequence , DNA Barcoding, Taxonomic , DNA, Recombinant/immunology , Epitopes/genetics , Epitopes/immunology , Genetic Vectors , HIV Core Protein p24/genetics , Hepatitis C Antigens/genetics , High-Throughput Nucleotide Sequencing , Humans , Oligonucleotides/genetics , Oligonucleotides/immunology , Peptide Fragments/genetics , Peptide Fragments/immunology , Polymerase Chain Reaction/methods
10.
Molecules ; 24(20)2019 Oct 17.
Article in English | MEDLINE | ID: mdl-31627288

ABSTRACT

Nano-objects made of nucleic acids are becoming promising materials in the biomedical field. This is, in part, due to DNA and RNA self-assembly properties that can be accurately computed to fabricate various complex nanoarchitectures of 2D and 3D shapes. The nanoparticles can be assembled from DNA, RNA, and chemically modified oligonucleotide mixtures which, in turn, influence their chemical and biophysical properties. Solid-phase synthesis allows large-scale production of individual oligonucleotide strands with batch-to-batch consistency and exceptional purity. All of these advantageous characteristics of nucleic-acid-based nanoparticles were known to be exceptionally useful as a nanoplatform for drug delivery purposes. Recently, several important discoveries have been achieved, demonstrating that nucleic acid nanoparticles (NANPs) can also be used to modulate the immune response of host cells. The purpose of this review is to briefly overview studies demonstrating architectural design principles of NANPs, as well as the ability of NANPs to control immune responses.


Subject(s)
DNA/therapeutic use , Immunity, Innate/drug effects , Immunologic Factors/therapeutic use , Nanoparticles/therapeutic use , Oligonucleotides/therapeutic use , RNA/therapeutic use , Base Pairing , Base Sequence , DNA/chemical synthesis , DNA/genetics , DNA/immunology , Drug Delivery Systems/methods , Immunologic Factors/chemical synthesis , Immunologic Factors/genetics , Immunotherapy/methods , Nanomedicine/methods , Nanoparticles/chemistry , Nucleic Acid Conformation , Oligonucleotides/chemical synthesis , Oligonucleotides/genetics , Oligonucleotides/immunology , RNA/chemical synthesis , RNA/genetics , RNA/immunology
11.
Nucleic Acid Ther ; 29(3): 161-166, 2019 06.
Article in English | MEDLINE | ID: mdl-30801231

ABSTRACT

The potential repertoire of short interfering RNA (siRNA) therapeutics is expanding as targeting strategies evolve. One approach to enable organ-specific delivery has been to directly conjugate siRNA to a monoclonal antibody (siRNA-mAb), analogous to antibody-drug conjugates. Detection of intact siRNA-mAb conjugates presents a bioanalytical challenge given that certain synthetic nucleotide chemical modifications and low-temperature requirements render common oligonucleotide detection assays, such as reverse transcription-polymerase chain reaction, incompatible with the immunoassay component. To circumvent these issues, we developed a triplex-forming oligonucleotide ELISA using locked nucleic acid (LNA) containing oligonucleotide probes. We demonstrate that the incorporation of these LNAs allow for an enrichment and immobilization of siRNA directly conjugated to an antibody at nondenaturing temperatures. Without further requirement for extraction or amplification, we can sensitively and specifically detect intact siRNA-mAb conjugates in complex matrices such as serum and tissue homogenate.


Subject(s)
Antibodies, Monoclonal/isolation & purification , Enzyme-Linked Immunosorbent Assay/methods , Oligonucleotides/isolation & purification , RNA, Small Interfering/isolation & purification , Antibodies, Monoclonal/genetics , Antibodies, Monoclonal/immunology , Humans , Immunoconjugates/genetics , Immunoconjugates/immunology , Oligonucleotides/genetics , Oligonucleotides/immunology , RNA, Small Interfering/genetics , RNA, Small Interfering/immunology
12.
Fish Shellfish Immunol ; 86: 361-367, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30502461

ABSTRACT

The emerging technology of aptamers that is also known as synthetic antibodies is rivalling antibodies research in the recent years. The unique yet important features of aptamers are advancing antibodies in diverse applications, which include disease diagnosis, prophylactic and therapeutic. The versatility of aptamer has further extended its application to function as gene expression modulator, known as synthetic riboswitches. This report reviewed and discussed the applications of aptamers technology in the biosecurity of aquaculture, the promising developments in biosensor detection for disease diagnosis as well as prophylactic and therapeutic measurements. The application of aptamers technology in immunophenotyping study of aquatic animal is highlighted. Lastly, the future perspective of aptamers in the management of aquatic animal health is discussed, special emphasis on the potential application of aptamers as synthetic riboswitches to enhance host immunity, as well as the growth performance.


Subject(s)
Antibodies/immunology , Aquaculture , Immunophenotyping/veterinary , Oligonucleotides/immunology , Animals , Immunophenotyping/methods
13.
Article in English | MEDLINE | ID: mdl-29462667

ABSTRACT

INTRODUCTION: Proximity Extension Assay (PEA) is a direct one-step protein quantification method using a pair of DNA oligonucleotides linked to antibodies against the target molecule. It requires polyclonal or two monoclonal antibodies (mAbs) that bind to target epitopes close enough to form a DNA duplex which is quantified by real-time PCR. Bevacizumab, an anti-cancer drug, is a mAb against vascular endothelial growth factor with common cardiovascular adverse effects. It is widely used off-label to treat neovascular eye disorders by intravitreal application of small doses. Even then, certain amount reaches systemic circulation which is considered relevant regarding safety. We aimed to set-up a PEA-based assay for bevacizumab in human plasma and to preliminary evaluate it in patients treated intravitreally. METHODS: We tested (PEA, quantitative PCR) several combinations of commercial mAbs and a Fab fragment against bevacizumab. The best combination was used to quantify bevacizumab in three patients donating plasma before and 24 h after the first intravitreal injection. RESULTS: A combination of a mAb and a Fab fragment (HCA184 and HCA182, Bio-Rad Laboratories, Inc.) performed best: standard curve R2 0.98, linear dynamic range 1-1000 pM, lower limit of quantification 1 pM (149 pg/mL) and a satisfactory precision (coefficient of variation 12%). All pre-dose patient concentrations were zero, while post-dose concentrations were 10.94, 13.73 and 55.49 ng/mL, in line with previous reports. DISCUSSION: This is the first set-up of a PEA-based assay for quantification of bevacizumab in human plasma. Its good performance and high sensitivity support further evaluation for potential uses particularly when the expected concentrations are low.


Subject(s)
Angiogenesis Inhibitors/blood , Bevacizumab/blood , Oligonucleotides/immunology , Real-Time Polymerase Chain Reaction/methods , Aged , Angiogenesis Inhibitors/administration & dosage , Angiogenesis Inhibitors/analysis , Bevacizumab/administration & dosage , Bevacizumab/analysis , Female , Humans , Intravitreal Injections , Male , Middle Aged , Pilot Projects , Reproducibility of Results , Sensitivity and Specificity
14.
J Exp Clin Cancer Res ; 36(1): 156, 2017 11 07.
Article in English | MEDLINE | ID: mdl-29115974

ABSTRACT

BACKGROUND: Whole-cell tumor vaccines have shown much promise; however, only limited success has been achieved for the goal of eliciting robust tumor-specific T-cell responses. METHODS: Hepatocellular carcinoma (HCC) cells, H22 and Hepa1-6, were modified by blocking the STAT3 signaling pathway with a STAT3 decoy oligodeoxynucleotide, and the immunogenicity and possibility of using these cell lysates as a vaccine were evaluated. RESULTS: STAT3-blocked whole HCC cell lysates inhibited tumor growth and tumorigenesis, and prolonged the survival of tumor-bearing mice. In addition, STAT3-blocked whole HCC cell lysates stimulated the activation of T cells and natural killer (NK) cells, and enhanced the infiltration of cytotoxic CD8+ T cells in the tumor tissues. In addition, the maturation of dendritic cells (DCs) was enhanced, which promoted the generation of immunological memory against HCC. Furthermore, secondary immune responses could be primed as soon as these immunized mice were challenged with HCC cells, accompanied by T cell and NK cell activation and infiltration. Additionally, immunization with this vaccine decreased the generation of Tregs and the production of TGF-ß and IL-10. Importantly, STAT3-blocked whole HCC cell lysates prevented HCC-mediated exhaustion of T cells and NK cells, showing low expression of checkpoint molecules such as PD-1 and TIGIT on T cells and NK cells in the immunized mice. CONCLUSIONS: The newly generated STAT3-blocked whole-cell HCC vaccine has potential for cancer cell vaccination.


Subject(s)
Cancer Vaccines/administration & dosage , Carcinoma, Hepatocellular/therapy , Liver Neoplasms/therapy , Oligonucleotides/administration & dosage , STAT3 Transcription Factor/antagonists & inhibitors , Animals , Cancer Vaccines/immunology , Cancer Vaccines/pharmacology , Carcinoma, Hepatocellular/immunology , Cell Line, Tumor , Female , Humans , Immunity, Cellular , Immunity, Humoral , Interleukin-10/metabolism , Killer Cells, Natural/immunology , Liver Neoplasms/immunology , Lymphocyte Activation , Mice , Oligonucleotides/immunology , Oligonucleotides/pharmacology , STAT3 Transcription Factor/genetics , Signal Transduction/drug effects , T-Lymphocytes/immunology , Transforming Growth Factor beta/metabolism , Xenograft Model Antitumor Assays
15.
J Am Chem Soc ; 139(44): 15784-15791, 2017 11 08.
Article in English | MEDLINE | ID: mdl-29024595

ABSTRACT

DNA has proven of high utility to modulate the surface functionality of metal-organic frameworks (MOFs) for various biomedical applications. Nevertheless, current methods for preparing DNA-MOF nanoparticles rely on either inefficient covalent conjugation or specific modification of oligonucleotides. In this work, we report that unmodified oligonucleotides can be loaded on MOFs with high density (∼2500 strands/particle) via intrinsic, multivalent coordination between DNA backbone phosphate and unsaturated zirconium sites on MOFs. More significantly, surface-bound DNA can be efficiently released in either bulk solution or specific organelles in live cells when free phosphate ions are present. As a proof-of-concept for using this novel type of DNA-MOFs in immunotherapy, we prepared a construct of immunostimulatory DNA-MOFs (isMOFs) by intrinsically coordinating cytosine-phosphate-guanosine (CpG) oligonucleotides on biocompatible zirconium MOF nanoparticles, which was further armed by a protection shell of calcium phosphate (CaP) exoskeleton. We demonstrated that isMOFs exhibited high cellular uptake, organelle specificity, and spatiotemporal control of Toll-like receptors (TLR)-triggered immune responses. When isMOF reached endolysosomes via microtubule-mediated trafficking, the CaP exoskeleton dissolved in the acidic environment and in situ generated free phosphate ions. As a result, CpG was released from isMOFs and stimulated potent immunostimulation in living macrophage cells. Compared with naked CpG-MOF, isMOFs exhibited 83-fold up-regulation in stimulated secretion of cytokines. We thus expect this isMOF design with soluble CaP exoskeleton and an embedded sequential "protect-release" program provides a highly generic approach for intracellular delivery of therapeutic nucleic acids.


Subject(s)
DNA/chemistry , Metal-Organic Frameworks/chemistry , Nanoparticles/chemistry , Oligonucleotides/immunology , Oligonucleotides/metabolism , Organelles/metabolism , Animals , Cell Survival , Mice , Organelles/chemistry , RAW 264.7 Cells , Solubility
16.
Nucleic Acids Res ; 45(4): 2210-2220, 2017 02 28.
Article in English | MEDLINE | ID: mdl-28108656

ABSTRACT

We introduce a new concept that utilizes cognate nucleic acid nanoparticles which are fully complementary and functionally-interdependent to each other. In the described approach, the physical interaction between sets of designed nanoparticles initiates a rapid isothermal shape change which triggers the activation of multiple functionalities and biological pathways including transcription, energy transfer, functional aptamers and RNA interference. The individual nanoparticles are not active and have controllable kinetics of re-association and fine-tunable chemical and thermodynamic stabilities. Computational algorithms were developed to accurately predict melting temperatures of nanoparticles of various compositions and trace the process of their re-association in silico. Additionally, tunable immunostimulatory properties of described nanoparticles suggest that the particles that do not induce pro-inflammatory cytokines and high levels of interferons can be used as scaffolds to carry therapeutic oligonucleotides, while particles with strong interferon and mild pro-inflammatory cytokine induction may qualify as vaccine adjuvants. The presented concept provides a simple, cost-effective and straightforward model for the development of combinatorial regulation of biological processes in nucleic acid nanotechnology.


Subject(s)
Nanoparticles/chemistry , Nucleic Acids/chemistry , Aptamers, Nucleotide , Cell Line, Tumor , Cytokines/metabolism , DNA/chemistry , DNA/genetics , DNA/immunology , Humans , Imaging, Three-Dimensional , Leukocytes, Mononuclear/metabolism , Microscopy, Atomic Force , Models, Molecular , Nanotechnology , Nucleic Acid Conformation , Nucleic Acids/genetics , Nucleic Acids/immunology , Oligonucleotides/chemistry , Oligonucleotides/immunology , RNA/chemistry , RNA/genetics , RNA/immunology , RNA Interference , Thermodynamics , Transcription, Genetic , Transfection
17.
Chem Commun (Camb) ; 53(11): 1840-1843, 2017 Feb 02.
Article in English | MEDLINE | ID: mdl-28111662

ABSTRACT

We have demonstrated the ability of iron carboxylate metal-organic frameworks to efficiently deliver unmethylated cytosine-phosphate-guanine oligonucleotides. The nanoconjugates induced a stronger immune response than did free cytosine-phosphateguanine oligonucleotides and showed T2-magnetic resonance imaging ability both in vitro and in vivo.


Subject(s)
Adjuvants, Immunologic/chemistry , Magnetic Resonance Imaging/methods , Oligonucleotides/chemistry , Oligonucleotides/immunology , Organometallic Compounds/chemistry , Animals , Mice , Particle Size , RAW 264.7 Cells , Surface Properties
18.
Nanomedicine (Lond) ; 11(20): 2647-2662, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27628310

ABSTRACT

AIM: We wanted to assess the potency of a trifunctional nanoparticle (NP) that targeted and activated CD8+ dendritic cells (DC) and delivered an antigen to induce antitumor responses. MATERIALS & METHODS: The DC targeting and activating properties of ferrous NPs conjugated with immunostimulatory CpG-oligonucleotides, anti-DEC205 antibody and ovalbumin (OVA) as a model antigen to induce antigen-specific T-cell responses and antitumor responses were analyzed. RESULTS: OVA-loaded NP conjugated with immunostimulatory CpG-oligonucleotides and anti-DEC205 antibody efficiently targeted and activated CD8+ DC in vivo, and induced strong OVA-specific T-cell activation. Vaccination of B16/OVA tumor-burdened mice with this NP formulation resulted in tumor growth arrest. CONCLUSION: CD8+ DC-targeting trifunctional nanocarriers bear significant potential for antitumor immunotherapy.


Subject(s)
CD8 Antigens/metabolism , Dendritic Cells/immunology , Magnetite Nanoparticles/chemistry , Melanoma, Experimental/therapy , Oligonucleotides/immunology , Ovalbumin/immunology , Animals , Antibodies/chemistry , Antibodies/immunology , Antigens, CD/immunology , Cell Proliferation , CpG Islands , Dendritic Cells/metabolism , Dextrans/chemistry , Fluorescent Dyes/chemistry , Humans , Immunotherapy , Lectins, C-Type/immunology , Lymphocyte Activation , Magnetite Nanoparticles/therapeutic use , Melanoma, Experimental/immunology , Melanoma, Experimental/pathology , Mice, Inbred C57BL , Minor Histocompatibility Antigens/immunology , Oligonucleotides/chemistry , Receptors, Cell Surface/immunology , Surface Properties , Tumor Burden , Vaccination
19.
J Immunol ; 196(1): 284-97, 2016 Jan 01.
Article in English | MEDLINE | ID: mdl-26608924

ABSTRACT

Nanoparticulate delivery systems for vaccine adjuvants, designed to enhance targeting of secondary lymphoid organs and activation of APCs, have shown substantial promise for enhanced immunopotentiation. We investigated the adjuvant activity of synthetic oligonucleotides containing CpG-rich motifs linked to the sucrose polymer Ficoll, forming soluble 50-nm particles (DV230-Ficoll), each containing >100 molecules of the TLR9 ligand, DV230. DV230-Ficoll was evaluated as an adjuvant for a candidate vaccine for anthrax using recombinant protective Ag (rPA) from Bacillus anthracis. A single immunization with rPA plus DV230-Ficoll induced 10-fold higher titers of toxin-neutralizing Abs in cynomolgus monkeys at 2 wk compared with animals immunized with equivalent amounts of monomeric DV230. Monkeys immunized either once or twice with rPA plus DV230-Ficoll were completely protected from challenge with 200 LD50 aerosolized anthrax spores. In mice, DV230-Ficoll was more potent than DV230 for the induction of innate immune responses at the injection site and draining lymph nodes. DV230-Ficoll was preferentially colocalized with rPA in key APC populations and induced greater maturation marker expression (CD69 and CD86) on these cells and stronger germinal center B and T cell responses, relative to DV230. DV230-Ficoll was also preferentially retained at the injection site and draining lymph nodes and produced fewer systemic inflammatory responses. These findings support the development of DV230-Ficoll as an adjuvant platform, particularly for vaccines such as for anthrax, for which rapid induction of protective immunity and memory with a single injection is very important.


Subject(s)
Adjuvants, Immunologic/administration & dosage , Anthrax Vaccines/immunology , Anthrax/prevention & control , Antigens, Bacterial/immunology , Bacterial Toxins/immunology , Oligonucleotides/immunology , Respiratory Tract Infections/prevention & control , Animals , Anthrax/immunology , Anthrax/microbiology , Anthrax Vaccines/administration & dosage , Antigens, Bacterial/genetics , Antigens, CD/biosynthesis , Antigens, Differentiation, T-Lymphocyte/biosynthesis , B-Lymphocytes/immunology , B7-2 Antigen/biosynthesis , Bacillus anthracis/immunology , Bacillus anthracis/pathogenicity , Bacterial Toxins/genetics , Dendritic Cells/immunology , Ficoll/immunology , GC Rich Sequence/genetics , Lectins, C-Type/biosynthesis , Macaca fascicularis , Macrophages/immunology , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Nanoparticles , Neutrophils/immunology , Oligonucleotides/genetics , Recombinant Proteins/immunology , Respiratory Tract Infections/immunology , Respiratory Tract Infections/microbiology , T-Lymphocytes/immunology , Vaccination , Vaccines, Synthetic/immunology
20.
Eur J Pharm Biopharm ; 93: 231-41, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25896446

ABSTRACT

Stable vaccines administered to the lungs by inhalation could circumvent many of the problems associated with current immunizations against respiratory infections. We earlier provided proof of concept in mice that pulmonary delivered whole inactivated virus (WIV) influenza vaccine formulated as a stable dry powder effectively elicits influenza-specific antibodies in lung and serum. Yet, mucosal IgA, considered particularly important for protection at the site of virus entry, was poorly induced. Here we investigate the suitability of various Toll-like receptor (TLR) ligands and the saponin-derived compound GPI-0100 to serve as adjuvant for influenza vaccine administered to the lungs as dry powder. The TLR ligands palmitoyl-3-cysteine-serine-lysine-4 (Pam3CSK4), monophosphoryl lipid A (MPLA) and CpG oligodeoxynucleotides (CpG ODN) as well as GPI-0100 tolerated the process of spray freeze-drying well. While Pam3CSK4 had no effect on systemic antibody titers, all the other adjuvants significantly increased influenza-specific serum and lung IgG titers. Yet, only GPI-0100 also enhanced mucosal IgA titers. Moreover, only GPI-0100-adjuvanted WIV provided partial protection against heterologous virus challenge. Pulmonary immunization with GPI-0100-adjuvanted vaccine did not induce an overt inflammatory response since influx of neutrophils and production of inflammatory cytokines were moderate and transient and lung histology was normal. Our results indicate that a GPI-0100-adjuvanted dry powder influenza vaccine is a safe and effective alternative to current parenteral vaccines.


Subject(s)
Adjuvants, Immunologic/administration & dosage , Freeze Drying , Influenza A Virus, H1N1 Subtype/immunology , Influenza Vaccines/administration & dosage , Respiratory Mucosa/drug effects , Saponins/administration & dosage , Adjuvants, Immunologic/chemistry , Administration, Inhalation , Animals , Antibodies, Viral/blood , Biomarkers/blood , Cells, Cultured , Chemistry, Pharmaceutical , CpG Islands , Cytokines/metabolism , Female , Inflammation Mediators/metabolism , Influenza Vaccines/chemistry , Influenza Vaccines/immunology , Ligands , Lipid A/administration & dosage , Lipid A/analogs & derivatives , Lipid A/chemistry , Lipid A/immunology , Lipopeptides/administration & dosage , Lipopeptides/chemistry , Lipopeptides/immunology , Mice, Inbred BALB C , Oligonucleotides/administration & dosage , Oligonucleotides/chemistry , Oligonucleotides/immunology , Powders , Respiratory Mucosa/immunology , Respiratory Mucosa/metabolism , Saponins/chemistry , Saponins/immunology , Technology, Pharmaceutical/methods , Toll-Like Receptors/agonists , Toll-Like Receptors/metabolism , Vaccination , Vaccines, Inactivated/administration & dosage
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