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1.
Poult Sci ; 100(2): 452-460, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33518096

ABSTRACT

Ovomucoid is a major egg white protein which is considered as the most dominant allergen in chicken eggs. Owing to the difficulty of separating ovomucoid from egg whites, researchers have adopted genetic deletion for development of hypoallergenic eggs. Previously, we used CRISPR/Cas9 to establish chickens with ovomucoid gene (OVM) mutations, but it remained unknown whether such hens could produce eggs at maturity. Here, we have reported on eggs laid by OVM-targeted hens. Except for watery egg whites, the eggs had no evident abnormalities. Real-time PCR revealed alternative splicing of OVM mRNA in hens, but their expression was limited. Immunoblotting detected neither mature ovomucoid nor ovomucoid-truncated splicing variants in egg whites. Sixteen chicks hatched from 28 fertilized eggs laid by OVM-targeted hens, and fourteen of the sixteen chicks demonstrated healthy growth. Taken together, our results demonstrated that OVM knockout could almost completely eliminate ovomucoid from eggs, without abolishing fertility. Thus, the eggs developed in this study have potential as a hypoallergenic food source for most patients with egg allergies.


Subject(s)
Chickens/genetics , Eggs/standards , Mutation , Ovomucin/genetics , Allergens/genetics , Animals , Chickens/growth & development , Chickens/physiology , Egg White/adverse effects , Egg White/chemistry , Egg White/standards , Female , Gene Deletion , Male , Oviposition/genetics , Ovomucin/adverse effects , Ovum
2.
Nutrients ; 9(2)2017 Feb 21.
Article in English | MEDLINE | ID: mdl-28230769

ABSTRACT

BACKGROUND: Gal d 1 (ovomucoid) is the dominant allergen in the chicken egg white. Hypoallergenic variants of this allergen can be used in immunotherapy as an egg allergy treatment approach. We hypothesised that disruption of two of the nine cysteine-cysteine bridges by site-directed mutagenesis will allow the production of a hypoallergenic variant of the protein; Methods: Two cysteine residues at C192 and C210 in domain III of the protein were mutated to alanine using site-directed mutagenesis, to disrupt two separate cysteine-cysteine bridges. The mutated and non-mutated proteins were expressed in Escherichia coli (E. coli) by induction with isopropyl ß-d-1-thiogalactopyranoside (IPTG). The expressed proteins were analysed using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotting to confirm expression. Immunoglobulin E (IgE) reactivity of the two proteins was analysed, by immunoblotting, against a pool of egg-allergic patients' sera. A pool of non-allergic patients' sera was also used in a separate blot as a negative control; Results: Mutant Gal d 1 showed diminished IgE reactivity in the immunoblot by showing lighter bands when compared to the non-mutated version, although there was more of the mutant protein immobilised on the membrane when compared to the wild-type protein. The non-allergic negative control showed no bands, indicating an absence of non-specific binding of secondary antibody to the proteins; Conclusion: Disruption of two cysteine bridges in domain III of Gal d 1 reduces IgE reactivity. Following downstream laboratory and clinical testing, this mutant protein can be used in immunotherapy to induce tolerance to Gal d 1 and in egg allergy diagnosis.


Subject(s)
Allergens/genetics , Cysteine/metabolism , Egg Hypersensitivity , Egg White/chemistry , Immune Tolerance , Mutation , Ovomucin/genetics , Animals , Chickens , Egg Hypersensitivity/immunology , Egg Hypersensitivity/prevention & control , Escherichia coli , Female , Genetic Techniques , Humans , Immunoglobulin E/metabolism , Immunotherapy , Mutagenesis , Ovomucin/immunology
3.
Mol Biol Evol ; 33(8): 1921-36, 2016 08.
Article in English | MEDLINE | ID: mdl-27189557

ABSTRACT

The gel-forming mucins are large glycosylated proteins that are essential components of the mucus layers covering epithelial cells. Using novel methods of identifying mucins based on profile hidden Markov models, we have found a large number of such proteins in Metazoa, aiding in their classification and allowing evolutionary studies. Most vertebrates have 5-6 gel-forming mucin genes and the genomic arrangement of these genes is well conserved throughout vertebrates. An exception is the frog Xenopus tropicalis with an expanded repertoire of at least 26 mucins of this type. Furthermore, we found that the ovomucin protein, originally identified in chicken, is characteristic of reptiles, birds, and amphibians. Muc6 is absent in teleost fish, but we now show that it is present in animals such as ghost sharks, demonstrating an early origin in vertebrate evolution. Public RNA-Seq data were analyzed with respect to mucins in zebrafish, frog, and chicken, thus allowing comparison in regard of tissue and developmental specificity. Analyses of invertebrate proteins reveal that gel-forming-mucin type of proteins is widely distributed also in this group. Their presence in Cnidaria, Porifera, and in Ctenophora (comb jellies) shows that these proteins were present early in metazoan evolution. Finally, we examined the evolution of the FCGBP protein, abundant in mucus and related to gel-forming mucins in terms of structure and localization. We demonstrate that FCGBP, ubiquitous in vertebrates, has a conserved N-terminal domain. Interestingly, this domain is also present as an N-terminal sequence in a number of bacterial proteins.


Subject(s)
Cell Adhesion Molecules/genetics , Mucins/genetics , Amino Acid Sequence , Animals , Cell Adhesion Molecules/chemistry , Cell Adhesion Molecules/metabolism , Epithelial Cells/metabolism , Evolution, Molecular , Genome/genetics , Humans , Markov Chains , Mucin-6/chemistry , Mucin-6/genetics , Mucin-6/metabolism , Mucins/chemistry , Mucins/metabolism , Mucus , Ovomucin/chemistry , Ovomucin/genetics , Ovomucin/metabolism , Phylogeny , Sequence Analysis, RNA , Structure-Activity Relationship
4.
Sci Rep ; 6: 23980, 2016 Apr 06.
Article in English | MEDLINE | ID: mdl-27050479

ABSTRACT

The CRISPR/Cas9 system is a simple and powerful tool for genome editing in various organisms including livestock animals. However, the system has not been applied to poultry because of the difficulty in accessing their zygotes. Here we report the implementation of CRISPR/Cas9-mediated gene targeting in chickens. Two egg white genes, ovalbumin and ovomucoid, were efficiently (>90%) mutagenized in cultured chicken primordial germ cells (PGCs) by transfection of circular plasmids encoding Cas9, a single guide RNA, and a gene encoding drug resistance, followed by transient antibiotic selection. We transplanted CRISPR-induced mutant-ovomucoid PGCs into recipient chicken embryos and established three germline chimeric roosters (G0). All of the roosters had donor-derived mutant-ovomucoid spermatozoa, and the two with a high transmission rate of donor-derived gametes produced heterozygous mutant ovomucoid chickens as about half of their donor-derived offspring in the next generation (G1). Furthermore, we generated ovomucoid homozygous mutant offspring (G2) by crossing the G1 mutant chickens. Taken together, these results demonstrate that the CRISPR/Cas9 system is a simple and effective gene-targeting method in chickens.


Subject(s)
Avian Proteins/genetics , CRISPR-Cas Systems , Chickens/genetics , Ovalbumin/genetics , Ovomucin/genetics , Animals , Cells, Cultured , Chick Embryo , Female , Gene Targeting/methods , Germ Cells/cytology , Germ Cells/metabolism , Male , Mutagenesis , Mutation , Reproducibility of Results
5.
Mol Immunol ; 65(1): 104-12, 2015 May.
Article in English | MEDLINE | ID: mdl-25656803

ABSTRACT

IgE-mediated allergy to chicken egg affects a large number of children and adults worldwide. The current management strategy for egg allergy is strict avoidance, however this is impractical due to the presence of eggs in a range of foods and pharmaceutical products including vaccines. Strict avoidance also poses nutritional disadvantages due to high nutritional value of eggs. Allergen specific immunotherapy is being pursued as a curative treatment, in which an allergic individual is gradually exposed to the allergen to induce tolerance. Use of recombinant proteins for immunotherapy has been beneficial due to the purity of the recombinant proteins compared to natural proteins. In this study, we produced IgE reactive recombinant egg white proteins that can be used for future immunotherapy. Using E. coli as an expression system, we successfully produced recombinant versions of Gal d 1, 2 and 3, that were IgE reactive when tested against a pool of egg allergic patients' sera. The IgE reactivity indicates that these recombinant proteins are capable of eliciting an immune response, thus being potential candidates for immunotherapy. We have, for the first time, attempted to produce recombinant versions of all 4 major egg white allergens in E. coli, and successfully produced 3, with only Gal d 4 showing loss of IgE reactivity in the recombinant version. The results suggest that egg allergy in Australian populations may mainly be due to IgE reactivity to Gal d 3 and 4, while Gal d 1 shows higher IgE reactivity. This is the first report of a collective and comparative immunological analysis of all 4 egg white allergens. The significance of this study is the potential use of the IgE reactive recombinant egg white proteins in immunotherapy to treat egg allergic patients.


Subject(s)
Egg Hypersensitivity/therapy , Egg Proteins/immunology , Immunoglobulin E/immunology , Immunotherapy/methods , Recombinant Proteins/therapeutic use , Allergens/immunology , Animals , Chickens , Cloning, Molecular , Conalbumin/genetics , Conalbumin/immunology , Egg Proteins/biosynthesis , Egg Proteins/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , Immune Tolerance , Muramidase/genetics , Muramidase/immunology , Ovalbumin/genetics , Ovalbumin/immunology , Ovomucin/genetics , Ovomucin/immunology
6.
Proteins ; 81(4): 704-14, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23239118

ABSTRACT

Understanding the effects of mutation on pH-dependent protein binding affinity is important in protein design, especially in the area of protein therapeutics. We propose a novel method for fast in silico mutagenesis of protein-protein complexes to calculate the effect of mutation as a function of pH. The free energy differences between the wild type and mutants are evaluated from a molecular mechanics model, combined with calculations of the equilibria of proton binding. The predicted pH-dependent energy profiles demonstrate excellent agreement with experimentally measured pH-dependency of the effect of mutations on the dissociation constants for the complex of turkey ovomucoid third domain (OMTKY3) and proteinase B. The virtual scanning mutagenesis identifies all hotspots responsible for pH-dependent binding of immunoglobulin G (IgG) to neonatal Fc receptor (FcRn) and the results support the current understanding of the salvage mechanism of the antibody by FcRn based on pH-selective binding. The method can be used to select mutations that change the pH-dependent binding profiles of proteins and guide the time consuming and expensive protein engineering experiments. As an application of this method, we propose a computational strategy to search for mutations that can alter the pH-dependent binding behavior of IgG to FcRn with the aim of improving the half-life of therapeutic antibodies in the target organism.


Subject(s)
Histocompatibility Antigens Class I/metabolism , Immunoglobulin G/metabolism , Ovomucin/metabolism , Receptors, Fc/metabolism , Serine Endopeptidases/metabolism , Animals , Computer Simulation , Histocompatibility Antigens Class I/genetics , Humans , Hydrogen-Ion Concentration , Immunoglobulin G/genetics , Mutagenesis , Mutation , Ovomucin/genetics , Protein Binding , Receptors, Fc/genetics , Serine Endopeptidases/genetics , Thermodynamics , Turkey
7.
Anim Genet ; 42(4): 421-7, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21749425

ABSTRACT

Transcriptome analysis using a cDNA microarray was performed to identify differentially expressed genes that are correlated with hatchability, and a new PCR-RFLP marker of high hatchability among the identified genes was observed. We used the cDNA microarray technique for gene expression profiling of the magnum epithelium of laying Tsaiya ducks, and several regulated genes associated with hatchability were found. The results of real-time PCR and Western blotting analysis confirmed that the mRNA and protein levels of ovomucoid in the magnum epithelium of animals in the low-hatchability group were significantly higher than the levels in the high-hatchability group (P < 0.05). Primers TovF1 and TovR1, designed according to the ovomucoid EST sequence, were used to amplify genomic DNA samples of different individual Tsaiya ducks, and sequence analysis of the amplified DNA products showed deletion among the ducks from the low-hatchability group. Primers TovF2 and TovR2 were used to perform PCR-RFLP analysis on the amplified DNA products to classify the ducks into +/+, +/- and -/- genotypes. The animals of +/+ and +/- genotypes were identified as having significantly higher hatchability than those of the -/- genotype (P < 0.05). In contrast, no differences were observed between genotypes in terms of fertility, duration of fertility, egg weight or total number of eggs. Our results indicated that a novel PCR-RFLP marker of high hatchability, an ovomucoid gene polymorphism, can be used as a genetic marker for marker-assisted selection to improve hatchability in Tsaiya ducks.


Subject(s)
Ducks/genetics , Genetic Variation , Ovomucin/genetics , Animals , Blotting, Western , Ducks/physiology , Gene Expression Profiling , Genetic Markers/genetics , Genotype , Oligonucleotide Array Sequence Analysis , Polymorphism, Restriction Fragment Length , Reproduction/genetics , Reverse Transcriptase Polymerase Chain Reaction
8.
J Agric Food Chem ; 58(23): 12530-6, 2010 Dec 08.
Article in English | MEDLINE | ID: mdl-21058653

ABSTRACT

The emu (Dromaius novaehollandiae) egg is considered promising as an alternative egg product. To obtain basic biochemical information on emu egg white, the major protein compositions in emu and chicken egg whites and the primary structures of potential allergenic proteins were compared. The dominant protein in emu egg white was ovotransferrin (OVT), followed by ovalbumin (OVA) and TENP protein. The OVA and ovomucoid (OVM) levels in emu egg white were estimated as significantly lower than those in chicken egg white by Western blotting and enzyme-linked immunosorbent assays using anti-chicken OVA or OVM antibodies. Lysozyme and its enzymatic activity were not detected in emu egg white. OVT, OVA, and OVM genes were also cloned, and their nucleotide and amino acid sequences were determined. The protein sequences of OVT, OVA, and OVM from emu showed lower similarities to those of chicken than other avian species, such as quail and turkey. These results emphasize the low allergenicity of emu egg white and its potential as an alternative to chicken egg white.


Subject(s)
Allergens/chemistry , Conalbumin/chemistry , Dromaiidae/immunology , Egg White/chemistry , Ovalbumin/chemistry , Ovomucin/chemistry , Allergens/genetics , Allergens/immunology , Amino Acid Sequence , Animals , Chickens , Cloning, Molecular , Conalbumin/genetics , Conalbumin/immunology , Dromaiidae/genetics , Molecular Sequence Data , Ovalbumin/genetics , Ovalbumin/immunology , Ovomucin/genetics , Ovomucin/immunology , Sequence Alignment
9.
Mol Cells ; 27(6): 657-65, 2009 Jun 30.
Article in English | MEDLINE | ID: mdl-19533036

ABSTRACT

The ovomucoid pre-mRNA has been folded into mini-hairpins adaptable for the RNA recognition motif (RRM) protein binding. The number of mini-hairpins were 372 for pre-mRNA and 83-86 for mature m RNA The spatial arrangements are, in average, 16 nucleotides per mini-hairpin which includes 7 nt in the stem, 5.6 nt in the loop and 3.7 nt in the inter-hairpin spacer. The constitutive splicing system of ovomucoid-pre-mRNA is characterized by preferred order of intron removal of 5/6 > 7/4 > 2/1 > 3. The 5' splice sites (5'SS), branch point sequences (BPS) and 3' splice sites (3'SS) were identified and free energies involved have been estimated in 7 splice sites. Thermodynamic barriers for splice sites from the least (| lowest | -Kcal) were 5,4, 7,6, 2,1, and 3; i.e., -18.7 Kcal, -20.2 Kcal, -21.0 Kcal, -24.0 Kcal, -25.4 Kcal, -26.4 Kcal and -28.2 Kcal respectively. These are parallel to the kinetic data of splicing order reported in the literature. As a result, the preferred order of intron removals can be described by a consideration of free energy changes involved in the spliceosomal assembly pathway. This finding is consistent with the validity of hnRNP formation mechanisms in previous reports.


Subject(s)
Chickens/genetics , Ovomucin/genetics , RNA Precursors/chemistry , RNA Precursors/genetics , RNA Splicing/genetics , Animals , Base Sequence , Molecular Sequence Data , Nucleic Acid Conformation , RNA Splice Sites/genetics , RNA, Small Nuclear/chemistry , RNA, Small Nuclear/genetics , Spliceosomes/genetics , Thermodynamics
10.
Clin Exp Allergy ; 37(6): 918-28, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17517106

ABSTRACT

BACKGROUND: Food allergies are on the rise and it is estimated that in North America, 8% of the children and 4% of the adults have food allergies. Food allergies tend to occur more often in children than in adults due to their immature digestive and immune systems. Hen's egg is among the most common cause of food-induced allergic reactions in North America. OBJECTIVE: The present study was undertaken to investigate the role of N-glycans of the third domain of ovomucoid in IgE binding and modulation of allergen-specific immune response in BALB/c mice. METHODS: The cDNA encoding the third domain of ovomucoid was inserted into the yeast genome and expressed in Pichia pastoris X-33 cells, under the control of the glyceraldehyde-3-phosphate (GAP) dehydrogenase promoter for constitutive expression to obtain a post-translationally modified and functionally active ovomucoid third domain. Upon expression, the protein was secreted into the extracellular medium and was purified by size exclusion chromatography. The recombinant protein was produced at 10 mg/L of the culture supernatant. BALB/c mice were sensitized with the recombinant and native forms of glycosylated ovomucoid third domain antigen. The allergic response of the native and the recombinant glycosylated forms of ovomucoid third domain antigens were compared using antibody and cytokine measurements. RESULTS: ELISA tests indicated a significant decrease in specific IgE antibodies to the recombinant N-linked glycosylated form (P-Gly), when compared with the native glycosylated form (DIII+) using mice sera. Immunization with P-Gly induced the production of IFN-gamma [T-helper type 1 (Th1) response] and lowered the production of IL-4 (Th2 response), and a skewed balance towards the Th1 cytokine demonstrated that P-Gly has a modulating ability on Th1/Th2 balance to down-regulate Th2 response. Furthermore, N-linked glycan (N28) in the third domain of ovomucoid was shown to be associated with suppression of the allergic response. CONCLUSION: Therefore, we can conclude that P-Gly facilitates and contributes to the discovery of new molecular target for the development of a safe and specific therapeutic vaccine for the treatment of egg allergy, and oligosaccharides do seem to play a major role in the suppression of IgE-binding activity.


Subject(s)
Antibody Formation , Egg Hypersensitivity/immunology , Immune Tolerance , Immunoglobulin E/immunology , Interferon-gamma/immunology , Interleukin-4/immunology , Ovomucin/immunology , Protein Processing, Post-Translational , Adult , Animals , Antibody Formation/drug effects , Child , Child, Preschool , Down-Regulation/drug effects , Down-Regulation/immunology , Egg Hypersensitivity/blood , Egg Hypersensitivity/therapy , Female , Glycosylation , Humans , Immune Tolerance/drug effects , Immunoglobulin E/blood , Immunotherapy, Active , Interferon-gamma/blood , Interleukin-4/blood , Mice , Mice, Inbred BALB C , Oligosaccharides/genetics , Oligosaccharides/immunology , Oligosaccharides/pharmacology , Ovomucin/genetics , Ovomucin/pharmacology , Pichia/genetics , Protein Binding/genetics , Protein Binding/immunology , Protein Processing, Post-Translational/genetics , Protein Structure, Tertiary/genetics , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/pharmacology , Th1 Cells/immunology , Th1 Cells/metabolism , Th2 Cells/immunology , Th2 Cells/metabolism , Trypsin Inhibitors/genetics , Trypsin Inhibitors/immunology , Trypsin Inhibitors/pharmacology , Vaccines/genetics , Vaccines/immunology , Vaccines/pharmacology
11.
BMC Genomics ; 7: 197, 2006 Aug 03.
Article in English | MEDLINE | ID: mdl-16887038

ABSTRACT

BACKGROUND: Mucins are large glycoproteins that cover epithelial surfaces of the body. All mucins contain at least one PTS domain, a region rich in proline, threonine and serine. Mucins are also characterized by von Willebrand D (VWD) domains or SEA domains. We have developed computational methods to identify mucin genes and proteins based on these properties of the proteins. Using such methods we are able to characterize different organisms where genome sequence is available with respect to their mucin repertoire. RESULTS: We have here made a comprehensive analysis of potential mucins encoded by the chicken (Gallus gallus) genome. Three transmembrane mucins (Muc4, Muc13, and Muc16) and four gel-forming mucins (Muc6, Muc2, Muc5ac, and Muc5b) were identified. The gel-forming mucins are encoded within a locus similar to the corresponding human mucins. However, the chicken has an additional gene inserted between Muc2 and Muc5ac that encodes the the alpha-subunit of ovomucin, a protein similar to Muc2, but it is lacking a PTS domain. We also show that the beta-subunit of ovomucin is the orthologue of human MUC6. The transmembrane Muc13 gene is in chicken as well as in mammals adjacent to the HEG (heart of glass) gene. HEG has PTS, EGF and transmembrane domains like Muc13, suggesting that these two proteins are evolutionary related. Unlike previously known mucins, the PTS domain of Muc13 is encoded by multiple exons, where each exon encodes a repeat unit of the PTS domain. CONCLUSION: We report new mucin homologues in chicken and this information will aid in understanding the evolution of mucins in vertebrates. The fact that ovomucin, a protein not found in mammals, was located in the same locus as other gel-forming mucins provides strong support that these proteins are evolutionary related. Furthermore, a relationship of HEG and the transmembrane Muc13 is suggested on the basis of their biochemical properties and their presence in the same locus. Finally, our finding that the chicken Muc13 is distributed between multiple exons raises the interesting possibility that the length of the PTS domain could be controlled by alternative splicing.


Subject(s)
Chickens/genetics , Exons , Mucins/genetics , Ovomucin/genetics , Protein Structure, Tertiary/genetics , Amino Acid Sequence , Animals , Computational Biology/methods , Evolution, Molecular , Forecasting , Genome , Humans , Membrane Glycoproteins/genetics , Molecular Sequence Data , Mucin 5AC , Mucin-2 , Mucin-5B , Mucin-6 , Multigene Family , Phylogeny , Sequence Homology, Amino Acid , Tandem Repeat Sequences , Vertebrates/genetics , Zebrafish/genetics , Zebrafish Proteins/genetics
12.
Allergy ; 61(7): 836-42, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16792581

ABSTRACT

The purpose of this study was to determine the in vivo desensitization efficacy of a hypoallergenic variant of egg white ovomucoid third domain (DIII) in Balb/c mice model. We mapped the immunodominant B-cell epitopes of ovomucoid in Balb/c mice. A hypoallergenic ovomucoid third domain (GMFA) mutant isoform having ablated allergenicity against egg allergic patient's sera was used to desensitize DIII-sensitized Balb/c mice by intraperitoneal injections. Ovomucoid DIII generated high levels of plasma histamine and specific immunoglobulin (Ig)E levels, and increased Th2 type cytokine (IL-4). On the other hand, the allergic response of mice desensitized with the GMFA was found to be significantly inhibited and abrogated by prevention of anaphylaxis reactions, low histamine levels and increased Th1-type cytokine (INF-gamma). It was found that significantly higher levels of IL-10 and IL-12 were secreted in the desensitized group. Desensitization with the GMFA antigen also suppressed synthesis of DIII specific-IgE levels and enhanced specific IgG2a and IgG levels compared with the group treated with the DIII antigen. The present results indicated that hyposensitization with the GMFA can desensitize or down-regulate the allergic response in Balb/c mice and this hypoallergenic variant of ovomucoid DIII can shift an ongoing allergen-specific Th2 response towards a Th1 skewed response.


Subject(s)
Allergens/therapeutic use , Desensitization, Immunologic , Egg Hypersensitivity/therapy , Ovomucin/therapeutic use , Allergens/genetics , Animals , Cytokines/immunology , Female , Histamine/blood , Immunoglobulin E/blood , Immunoglobulin G/blood , Mice , Mice, Inbred BALB C , Ovomucin/genetics , Recombinant Proteins/therapeutic use , Spleen/cytology , Spleen/immunology
13.
Arch Virol ; 151(10): 1933-46, 2006 Oct.
Article in English | MEDLINE | ID: mdl-16732496

ABSTRACT

Interferons induced by viral infections can have powerful immuno- modulatory effects, and several epidemiologic studies have found an association between certain viral infections and reduced prevalence of allergy. We hypothesized that allergenic proteins could be synthesized by a replicating virus, and this construct could be useful as an immunomodulator. To test this hypothesis, we cloned an allergenic protein (ovomucoid [OVM]) into a murine picornavirus (Mengo virus) vector. This plasmid has a multicloning site surrounded by auto-catalytic sequences so that a foreign protein will be cleaved from viral proteins during replication. OVM sequences were cloned in the context of full-length viral genome cDNA, T7 RNA transcripts of this plasmid were transfected into HeLa cells, and recombinant virus plaques appeared on the second passage. Sequence analysis of recombinant viruses derived from individual plaques demonstrated that three viral isolates contained up to 2/3 of the OVM coding sequence, which was retained by the viruses after 5 additional passages in HeLa cells. The experiments verify the stable expression of immunoreactive OVM subunits by replicating viruses. These virus/allergen constructs could provide a tool to evaluate whether intracellular presentation of allergenic proteins in the context of a viral infection could prevent allergic sensitization upon re-challenge.


Subject(s)
Allergens/biosynthesis , Mengovirus/physiology , Ovomucin/biosynthesis , Reassortant Viruses/physiology , Allergens/genetics , Animals , Cardiovirus Infections/virology , Genetic Vectors/metabolism , Genetic Vectors/physiology , Genome, Viral/genetics , HeLa Cells/metabolism , Humans , Mengovirus/genetics , Mengovirus/metabolism , Mice , Ovomucin/genetics , Ovomucin/immunology , Plasmids/genetics , Reassortant Viruses/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/immunology , Recombination, Genetic , Serial Passage , Species Specificity , Transfection , Virus Replication
14.
Proteins ; 63(3): 697-708, 2006 May 15.
Article in English | MEDLINE | ID: mdl-16463276

ABSTRACT

The ability to predict and characterize distributions of reactivities over families and even superfamilies of proteins opens the door to an array of analyses regarding functional evolution. In this article, insights into functional evolution in the Kazal inhibitor superfamily are gained by analyzing and comparing predicted association free energy distributions against six serine proteinases, over a number of groups of inhibitors: all possible Kazal inhibitors, natural avian ovomucoid first and third domains, and sets of Kazal inhibitors with statistically weighted combinations of residues. The results indicate that, despite the great hypervariability of residues in the 10 proteinase-binding positions, avian ovomucoid third domains evolved to inhibit enzymes similar to the six enzymes selected, whereas the orthologous first domains are not inhibitors of these enzymes on purpose. Hypervariability arises because of similarity in energetic contribution from multiple residue types; conservation is in terms of functionality, with "good" residues, which make positive or less deleterious contributions to the binding, selected more frequently, and yielding overall the same distributional characteristics. Further analysis of the distributions indicates that while nature did optimize inhibitor strength, the objective may not have been the strongest possible inhibitor against one enzyme but rather an inhibitor that is relatively strong against a number of enzymes.


Subject(s)
Evolution, Molecular , Ovomucin/chemistry , Trypsin Inhibitor, Kazal Pancreatic/chemistry , Amino Acid Sequence , Animals , Molecular Sequence Data , Multigene Family , Ovomucin/genetics , Ovomucin/physiology , Trypsin Inhibitor, Kazal Pancreatic/genetics , Turkeys
15.
Methods Enzymol ; 398: 522-40, 2005.
Article in English | MEDLINE | ID: mdl-16275356

ABSTRACT

Protein degradation by 26S proteasomes requires the coordinated action of multiple binding and catalytic activities to process ubiquitinated protein substrates. For the purpose of studying conjugate degradation independently of substrate targeting and unfolding steps, we have developed substrates based on an N-terminal fusion of ubiquitin to an irreversibly unfolded protein, the 83 amino acid HA epitope-tagged first domain of chicken ovomucoid. Fluorescent labeling of the six cysteines in the ovomucoid moiety (OM) with Lucifer Yellow iodoacetamide yields UbOM(LY); the ubiquitin in the fusion protein can be extended by the addition of a K48-linked polyubiquitin chain to form Ub(n)OM(LY). UbOM(LY) derivatives provide versatile substrates to monitor both protein degradation and deubiquitination by 26S proteasomes in vitro. Comparisons of polyubiquitin conjugates of unfolded OM(LY) with folded dihydrofolate reductase (DHFR) in degradation assays can help resolve and identify the rate-limiting steps in proteasome degradation.


Subject(s)
Ovomucin/metabolism , Proteasome Endopeptidase Complex/metabolism , Recombinant Fusion Proteins/metabolism , Ubiquitin/metabolism , Animals , Blotting, Western , Cattle , Escherichia coli , Kinetics , Ovomucin/genetics , Polyubiquitin/biosynthesis , Proteasome Endopeptidase Complex/physiology , Recombinant Fusion Proteins/genetics , Substrate Specificity , Ubiquitin/genetics
16.
DNA Seq ; 15(4): 251-61, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15620212

ABSTRACT

The primary amino acid sequence of alpha-subunit in ovomucin (OVM) from hen thick egg white was determined. The 2087 amino acid residues with a relative molecular mass of 230.9 kDa along the full length of the alpha-subunit were represented. The alpha-subunit contains domains, arranged from the N- to C-terminals in the following order: D1-D2-D'-D3-R (central region)-D4-C1-CK (Cystine-knot), in a manner similar to the arrangement of D, C and CK domains in human pre-pro-von Willebrand factor (hpp-vWF) and hMUC2. The alpha-subunit showed identities on amino acid sequences with hpp-vWF and hMUC2 at 33 and 41% in the N-terminal region and 30 and 38% in the C-terminal region, respectively. The numbers and positions of cysteine residues were highly conserved among alpha-subunit, hpp-vWF and hMUC2. However, R showed no virtual sequence homology with the corresponding regions in two proteins. It was estimated that alpha-subunit was not part of a large peptide of OVM, but was independently synthesized from beta-subunit.


Subject(s)
Ovomucin/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Northern , Chickens/genetics , DNA, Complementary , Molecular Sequence Data , Sequence Analysis, Protein
17.
J Proteome Res ; 3(5): 1033-41, 2004.
Article in English | MEDLINE | ID: mdl-15473693

ABSTRACT

Expanded understanding of the factors that direct polypeptide ion fragmentation can lead to improved specificity in the use of tandem mass spectrometry for the identification and characterization of proteins. Like the fragmentation of peptide cations, the dissociation of whole protein cations shows several preferred cleavages, the likelihood for which is parent ion charge dependent. While such cleavages are often observed, they are far from universally observed, despite the presence of the residues known to promote them. Furthermore, cleavages at residues not noted to be common in a variety of proteins can be dominant for a particular protein or protein ion charge state. Motivated by the ability to study a small protein, turkey ovomucoid third domain, for which a variety of single amino acid variants are available, the effects of changing the identity of one amino acid in the protein sequence on its dissociation behavior were examined. In particular, changes in amino acids associated with C-terminal aspartic acid cleavage and N-terminal proline cleavage were emphasized. Consistent with previous studies, the product ion spectra were found to be dependent upon the parent ion charge state. Furthermore, the fraction of possible C-terminal aspartic acid cleavages observed to occur for this protein was significantly larger than the fraction of possible N-terminal proline cleavages. In fact, very little N-terminal proline cleavage was noted for the wild-type protein despite the presence of three proline residues in the protein. The addition/removal of proline and aspartic acids was studied along with changes in selected residues adjacent to proline residues. Evidence for inhibition of proline cleavage by the presence of nearby basic residues was noted, particularly if the basic residue was likely to be protonated.


Subject(s)
Amino Acid Substitution , Mass Spectrometry , Ovomucin/chemistry , Amino Acid Sequence , Animals , Arginine/chemistry , Aspartic Acid/chemistry , Histidine/chemistry , Lysine/chemistry , Molecular Sequence Data , Ovomucin/genetics , Oxidation-Reduction , Peptide Fragments/chemistry , Peptide Fragments/genetics , Proline/chemistry , Recombinant Proteins/chemistry , Turkeys
19.
Biochem Biophys Res Commun ; 311(1): 223-8, 2003 Nov 07.
Article in English | MEDLINE | ID: mdl-14575717

ABSTRACT

An undecane peptide (Gly-Ser-Pro-Gly-Ile-Pro-Gly-Ser-Thr-Gly-Met) was genetically attached to the N-terminus of ovomucoid third domain (DIII) to investigate structural characteristics of linear IgE and IgG (B cell) epitopes in DIII with respect to modulation of the immune response towards antigenicity and allergenicity. Balb/c mice were sensitized with native DIII, wild type recombinant DIII, and recombinant modified DIII containing the extra amino acid stretch. The immune responses to the antigens were compared using enzyme-linked immunosorbent assay. Interestingly, specific IgE and IgG levels were suppressed when the modified DIII was used as antigen. This was further confirmed by synthesizing immunodominant IgE and IgG epitopes of DIII on cellulose acetate membrane (SPOTs) and probing them with antibodies raised against DIII antigens. Anti-recombinant wild type DIII anti-serum showed strong binding activities to immunodominant IgE and IgG epitopes, while anti-modified DIII serum did not show any significant binding to the IgE and IgG epitopes. Thus, it is clearly demonstrated that the amino acid stretch in DIII is masking the immune reactive epitope. Genetical attachment of peptides into DIII was found to be effective in reducing the production of specific IgE and IgG antibodies in mice.


Subject(s)
Alkanes/chemistry , Alkanes/immunology , Immunoglobulin E/blood , Immunoglobulin G/blood , Ovomucin/chemistry , Ovomucin/immunology , Adjuvants, Immunologic/chemistry , Amino Acid Sequence , Animals , Antigens/chemistry , Antigens/immunology , Epitope Mapping , Female , Immunoglobulin E/immunology , Immunoglobulin G/immunology , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Ovomucin/genetics , Protein Engineering/methods , Recombinant Proteins/chemistry , Recombinant Proteins/immunology , Structure-Activity Relationship
20.
Biochemistry ; 42(10): 2847-56, 2003 Mar 18.
Article in English | MEDLINE | ID: mdl-12627950

ABSTRACT

From the larger set of 191 variants at all the variable contact positions in the turkey ovomucoid third domain, we selected a subset that consists of Asp, Glu, His, and Lys residues at eight of the nine contiguous P6-P3' positions (residues 13-21), the exception being P3-Cys16 which is involved in a conserved disulfide bridge. Two-dimensional [1H,1H]-TOCSY data were collected for each variant as a function of sample pH. This allowed for the evaluation of 31 of the 32 pK(a) values for these residues, the exception being that of P5-Lys14, whose signals at high pH could not be resolved from those of other Lys residues in the molecule. Only two of the titrating residues are present in the wild-type protein (P6-Lys13 and P1'-Glu19); hence, these measurements complement earlier measurements by A. D. Robertson and co-workers. This data set was supplemented with results from the pH dependence of NMR spectra of four additional single mutants, P1-Leu18Gly, P1-Leu18Ala, P2-Thr17Val, and P3'-Arg21Ala, and two double mutants, P2-Thr17Val/P3'-Arg21Ala and P8-Tyr11Phe/P6-Lys13Asp. Probably the most striking result was observation of a P2-Thr17...P1'-Glu19 hydrogen bond and a P1'-Glu19-P3'-Arg21 electrostatic interaction within the triad of P2, P1', and P3' (residues 17, 19, and 21, respectively). In several cases, the pK(a) of a particular residue was sensed by resonances not only in that residue but also in residue(s) with which it interacts. Remarkably, in several interacting systems, resonances from different protons within the same residue yielded different pHmid values.


Subject(s)
Amino Acid Substitution/genetics , Nuclear Magnetic Resonance, Biomolecular , Ovomucin/chemistry , Ovomucin/genetics , Serine Proteinase Inhibitors/chemistry , Alanine/genetics , Amino Acid Sequence , Animals , Aspartic Acid/genetics , Binding Sites/genetics , Genetic Variation , Glutamic Acid/chemistry , Glutamic Acid/genetics , Glycine/genetics , Histidine/genetics , Hydrogen Bonding , Hydrogen-Ion Concentration , Lysine/chemistry , Lysine/genetics , Models, Chemical , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular/methods , Protein Conformation , Protein Structure, Tertiary/genetics , Thermodynamics , Threonine/genetics , Titrimetry , Turkeys
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