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1.
Sci Rep ; 7(1): 11954, 2017 09 20.
Article in English | MEDLINE | ID: mdl-28931870

ABSTRACT

Altered metabolism is considered as a hallmark of cancer. Here we investigated expression of 3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) 2 lyase (HMGCL), an essential enzyme in ketogenesis, which produces ketone bodies by the breakdown of fatty acids to supply energy, in nasopharyngeal carcinoma (NPC). The expression of HMGCL was silenced in NPC tissue. Downregulation of HMGCL in NPC was associated with low intracellular ß-hydroxybutyrate (ß-HB) production, thereby reducing reactive oxygen species (ROS) generation. Ectopic expression of HMGCL restored ß-HB level, associated with suppressed proliferation and colony formation of NPC cells in vitro and decreased tumorigenicity in vivo. HMGCL suppressed the migration and invasion of NPC cells in vitro via mesenchymal-epithelial transition. Furthermore, extracellular ß-HB supply suppressed the proliferation and migration of NPC cells. Both intra- and extracellular ß-HB exerting a suppressive role in NPC depends on ROS generation. Ketogenesis may be impaired in NPC cells due to lack of HMGCL expression, suggesting that it may be a promising target in NPC therapy.


Subject(s)
Cell Movement , Cell Proliferation , Epithelial Cells/pathology , Nasopharyngeal Carcinoma/pathology , Oxidative Stress , Oxo-Acid-Lyases/biosynthesis , 3-Hydroxybutyric Acid/metabolism , Down-Regulation , Epithelial-Mesenchymal Transition , Humans , Reactive Oxygen Species/metabolism , Tumor Cells, Cultured
2.
Int J Food Microbiol ; 256: 11-19, 2017 Sep 01.
Article in English | MEDLINE | ID: mdl-28578265

ABSTRACT

Microbial fermentation is an indispensable process for high quality chocolate from cocoa bean raw material. lactic acid bacteria (LAB) are among the major microorganisms responsible for cocoa fermentation but their exact role remains to be elucidated. In this study, we analyzed the diversity of LAB in six cocoa producing regions of Ivory Coast. Ribosomal 16S gene sequence analysis showed that Lactobacillus plantarum and Leuconostoc mesenteroides are the dominant LAB species in these six regions. In addition, other species were identified as the minor microbial population, namely Lactobacillus curieae, Enterococcus faecium, Fructobacillus pseudoficulneus, Lactobacillus casei, Weissella paramesenteroides and Weissella cibaria. However, in each region, the LAB microbial population was composed of a restricted number of species (maximum 5 species), which varied between the different regions. LAB implication in the breakdown of citric acid was investigated as a fundamental property for a successful cocoa fermentation process. High citrate lyase producer strains were characterized by rapid citric acid consumption, as revealed by a 4-fold decrease in citric acid concentration in the growth medium within 12h, concomitant with an increase in acetic acid and lactic acid concentration. The production of citrate lyase was strongly dependent on environmental conditions, with optimum production at acidic pH (pH<5), and moderate temperature (30-40°C), which corresponds to conditions prevailing in the early stage of natural cocoa fermentation. This study reveals that one of the major roles of LAB in the cocoa fermentation process involves the breakdown of citric acid during the early stage of cocoa fermentation through the activity of citrate lyase.


Subject(s)
Cacao/microbiology , Citric Acid/metabolism , Fermentation/physiology , Lactobacillus plantarum/metabolism , Leuconostoc mesenteroides/metabolism , Multienzyme Complexes/metabolism , Oxo-Acid-Lyases/metabolism , Acetic Acid/metabolism , Chocolate , Cote d'Ivoire , Culture Media/metabolism , Lactic Acid/metabolism , Lactobacillus plantarum/classification , Lactobacillus plantarum/genetics , Lactobacillus plantarum/isolation & purification , Leuconostoc mesenteroides/classification , Leuconostoc mesenteroides/genetics , Leuconostoc mesenteroides/isolation & purification , Multienzyme Complexes/biosynthesis , Oxo-Acid-Lyases/biosynthesis , RNA, Ribosomal, 16S/genetics
3.
PLoS One ; 10(10): e0140491, 2015.
Article in English | MEDLINE | ID: mdl-26465156

ABSTRACT

Sclerotinia sclerotiorum and Botrytis cinerea are notorious plant pathogenic fungi with an extensive host range including Brassica crops. Glucosinolates (GSLs) are an important group of secondary metabolites characteristic of the Brassicales order, whose degradation products are proving to be increasingly important in plant protection. Enhancing the defense effect of GSL and their associated degradation products is an attractive strategy to strengthen the resistance of plants by transgenic approaches. We generated the lines of Brassica napus with three biosynthesis genes involved in GSL metabolic pathway (BnMAM1, BnCYP83A1 and BnUGT74B1), respectively. We then measured the foliar GSLs of each transgenic lines and inoculated them with S. sclerotiorum and B. cinerea. Compared with the wild type control, over-expressing BnUGT74B1 in B. napus increased the aliphatic and indolic GSL levels by 1.7 and 1.5 folds in leaves respectively; while over-expressing BnMAM1 or BnCYP83A1 resulted in an approximate 1.5-fold higher only in the aliphatic GSL level in leaves. The results of plant inoculation demonstrated that BnUGT74B1-overexpressing lines showed less severe disease symptoms and tissue damage compared with the wild type control, but BnMAM1 or BnCYP83A1-overexpressing lines showed no significant difference in comparison to the controls. These results suggest that the resistance to S. sclerotiorum and B. cinerea in B. napus could be enhanced through tailoring the GSL profiles by transgenic approaches or molecular breeding, which provides useful information to assist plant breeders to design improved breeding strategies.


Subject(s)
Arabidopsis Proteins/biosynthesis , Cytochrome P-450 Enzyme System/biosynthesis , Disease Resistance/genetics , Glucosyltransferases/biosynthesis , Oxo-Acid-Lyases/biosynthesis , Plant Diseases/genetics , Arabidopsis Proteins/genetics , Ascomycota/pathogenicity , Botrytis/pathogenicity , Brassica napus/genetics , Brassica napus/growth & development , Brassica napus/microbiology , Cytochrome P-450 Enzyme System/genetics , Gene Expression Regulation, Plant , Genotype , Glucosinolates/metabolism , Glucosyltransferases/genetics , Oxo-Acid-Lyases/genetics , Plant Diseases/microbiology , Plant Leaves/genetics , Plant Leaves/microbiology , Plants, Genetically Modified
4.
Metab Eng ; 29: 208-216, 2015 May.
Article in English | MEDLINE | ID: mdl-25817210

ABSTRACT

In this report, UbiE and UbiH in the quinone modification pathway (QMP) were identified in addition to UbiG as bottleneck enzymes in the CoQ10 biosynthesis by Rhodobacter sphaeroides. The CoQ10 content was enhanced after co-overexpression of UbiE and UbiG, however, accompanied by the accumulation of the intermediate 10P-MMBQ. UbiH was then co-overexpressed to pull the metabolic flux towards downstream, resulting in an elevated CoQ10 productivity and decreased biomass. On the other hand, the expression levels of UbiE and UbiG were tuned to eliminate the intermediate accumulation, however at the sacrifice of productivity. To alleviate the detrimental effect on either productivity or cell growth, we tried to fuse UbiG with UbiE and localize them onto the membrane to elevate intermediate conversion. By fusing UbiE and UbiG to pufX, CoQ10 was accumulated to 108.51±2.76mg/L with a biomass of 12.2±0.9g/L. At last, we combined the optimized QMP and the previously engineered 2-methyl-d-erythritol-4-phosphate pathway (MEP) to further boost CoQ10 biosynthesis, resulting in a strain with 138±2.64mg/L CoQ10 production.


Subject(s)
Bacterial Proteins , Methyltransferases , Mixed Function Oxygenases , Oxo-Acid-Lyases , Rhodobacter sphaeroides , Ubiquinone/analogs & derivatives , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Methyltransferases/biosynthesis , Methyltransferases/genetics , Mixed Function Oxygenases/biosynthesis , Mixed Function Oxygenases/genetics , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/genetics , Rhodobacter sphaeroides/genetics , Rhodobacter sphaeroides/metabolism , Ubiquinone/biosynthesis , Ubiquinone/genetics
5.
Curr Microbiol ; 70(6): 821-8, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25724343

ABSTRACT

Homocitrate synthase (EC 2.3.3.14) regulates the first step of fungal lysine biosynthesis. The gene encoding homocitrate synthase was identified in whole genomic sequencing of Flammulina velutipes and contains seven introns. The homocitrate synthase gene of F. velutipes strain W23 (Fvhcs) is 1780 bp in length and encodes a 464 amino acid protein with a predicted molecular weight 50.7 kDa. Phylogenetic analysis of Fvhcs and other homocitrate synthase proteins from diverse fungi produced a topology congruent with the current best estimate of organismal phylogeny. Analysis of protein domains by InterProScan and a motif search found that Fvhcs gene encodes homocitrate synthase protein conserved across Agaricomycotina. In addition, we sequenced the transcriptome of different developmental stages and structures of the fruiting body to analyze the expression levels of the Fvhcs gene. The data showed a correlation between Fvhcs gene expression and lysine values in different developmental stages and structures of F. velutipes.


Subject(s)
Flammulina/chemistry , Flammulina/enzymology , Gene Expression Regulation, Fungal , Lysine/analysis , Oxo-Acid-Lyases/biosynthesis , Cluster Analysis , DNA, Fungal/chemistry , DNA, Fungal/genetics , Flammulina/genetics , Flammulina/growth & development , Gene Expression Profiling , Genome, Fungal , Introns , Molecular Weight , Oxo-Acid-Lyases/chemistry , Oxo-Acid-Lyases/genetics , Phylogeny , Sequence Analysis, DNA , Sequence Homology, Amino Acid
6.
Glycobiology ; 22(3): 417-28, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22042767

ABSTRACT

The inability to produce recombinant glycoproteins with authentic N-glycans is a limitation of many heterologous protein expression systems. In the baculovirus-insect cell system, this limitation has been addressed by glycoengineering insect cell lines with mammalian genes encoding protein N-glycosylation functions ("glycogenes") under the transcriptional control of constitutive promoters. However, a potential problem with this approach is that the metabolic load imposed by the expression of multiple transgenes could adversely impact the growth and/or stability of glycoengineered insect cell lines. Thus, we created a new transgenic insect cell line (SfSWT-5) with an inducibly mammalianized protein N-glycosylation pathway. Expression of all six glycogenes was induced when uninfected SfSWT-5 cells were cultured in growth medium containing doxycycline. Higher levels of expression and induction were observed when SfSWT-5 cells were cultured with doxycycline and infected with a baculovirus. Interestingly, there were no major differences in the short-term growth properties of SfSWT-5 cells cultured with or without doxycycline. Furthermore, there were no major differences in the phenotypic stability of these cells after continuous culture for over 300 passages with or without doxycycline. Baculovirus-infected Sf9 and SfSWT-5 cells produced about the same amounts of a model recombinant glycoprotein, but only the latter sialylated this product and sialylation was more pronounced when the cells were treated with doxycycline. In summary, this is the first report of a lower eukaryotic system with an inducibly mammalianized protein N-glycosylation pathway and the first to examine how the presumed metabolic load imposed by multiple transgene expression impacts insect cell growth and stability.


Subject(s)
Cell Line/metabolism , Genetic Engineering , Glycosyltransferases/biosynthesis , Oxo-Acid-Lyases/biosynthesis , Spodoptera/cytology , Animals , Baculoviridae/genetics , Cattle , Cell Line/enzymology , Cell Proliferation , Cloning, Molecular , Gene Expression Regulation , Genetic Vectors , Glycoproteins/biosynthesis , Glycoproteins/metabolism , Glycosylation , Glycosyltransferases/genetics , Glycosyltransferases/metabolism , Humans , Metabolic Networks and Pathways , Mice , Oxo-Acid-Lyases/genetics , Oxo-Acid-Lyases/metabolism , Phenotype , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
7.
Bioprocess Biosyst Eng ; 35(5): 683-8, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22052233

ABSTRACT

To improve the arachidonic acid (ARA) accumulation in Mortierella alpina, a mixed B-group vitamin addition strategy was developed. The ARA titer reached up to 10.0 g/L, 1.7-fold of the control. At the same time, the highest specific activities of key enzymes involved in ARA biosynthesis, including malic enzyme, glucose-6-phosphate dehydrogenase and ATP: citrate lyase, were 63.3, 38.6 and 53.7% higher than the control, respectively. The possible vitamin triggered improved ARA accumulation mechanism was thus elucidated that B-group vitamins could function as the cofactors of the key enzymes involved in ARA biosynthesis, or precursors for the formation of NADPH and acetyl-CoA which were crucial for ARA synthesis, and strengthened the related metabolic flux.


Subject(s)
Arachidonic Acid/biosynthesis , Mortierella/metabolism , Vitamin B Complex/pharmacology , Adenosine Triphosphate/biosynthesis , Fungal Proteins/biosynthesis , Glucosephosphate Dehydrogenase/biosynthesis , Multienzyme Complexes/biosynthesis , Oxo-Acid-Lyases/biosynthesis
8.
Biochem Biophys Res Commun ; 388(1): 107-11, 2009 Oct 09.
Article in English | MEDLINE | ID: mdl-19646958

ABSTRACT

As part of a general study into the impact of quaternary structure on enzyme function, a library of 31 point mutations were engineered at the dimer-dimer interface of the homotetrameric (beta/alpha)(8)-barrel protein, N-acetylneuraminate lyase (NAL, EC 4.1.3.3). Disruption of the interface generated either soluble tetramers or putative dimers that were absolutely insoluble and inactive. Intriguingly, the soluble tetramers were found to have widely varying k(cat) values, hinting at a role for the interface in catalysis. Leucine 171 was identified as essential to interface integrity. We conclude that the dimer-dimer interface of NAL is intolerant to mutation and essential for functional expression.


Subject(s)
Escherichia coli/enzymology , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/chemistry , Leucine/chemistry , Leucine/genetics , Oxo-Acid-Lyases/genetics , Point Mutation , Protein Multimerization , Protein Structure, Quaternary/genetics
9.
Biochemistry ; 47(11): 3426-34, 2008 Mar 18.
Article in English | MEDLINE | ID: mdl-18284213

ABSTRACT

Menaquinone is a lipid-soluble molecule that plays an essential role as an electron carrier in the respiratory chain of many bacteria. We have previously shown that its biosynthesis in Escherichia coli involves a new intermediate, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC), and requires an additional enzyme to convert this intermediate into (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). Here, we report the identification and characterization of MenH (or YfbB), an enzyme previously proposed to catalyze a late step in menaquinone biosynthesis, as the SHCHC synthase. The synthase catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from SEPHCHC and the formation of SHCHC. It is an efficient enzyme ( k cat/ K M = 2.0 x 10 (7) M (-1) s (-1)) that provides a smaller transition-state stabilization than other enzymes catalyzing proton abstraction from carbon acids. Despite its lack of the proposed thioesterase activity, the SHCHC synthase is homologous to the well-characterized C-C bond hydrolase MhpC. The crystallographic structure of the Vibrio cholerae MenH protein closely resembles that of MhpC and contains a Ser-His-Asp triad typical of serine proteases. Interestingly, this triad is conserved in all MenH proteins and is essential for the SHCHC synthase activity. Mutational analysis found that the catalytic efficiency of the E. coli protein is reduced by 1.4 x 10 (3), 2.1 x 10 (5), and 9.3 x 10 (3) folds when alanine replaces serine, histidine, and aspartate of the triad, respectively. These results show that the SHCHC synthase is closely related to alpha/beta hydrolases but catalyzes a reaction mechanistically distinct from all known hydrolase reactions.


Subject(s)
Escherichia coli Proteins/biosynthesis , Escherichia coli Proteins/chemistry , Oxo-Acid-Lyases/chemistry , Vitamin K 2/metabolism , Catalysis , Conserved Sequence , Cyclohexanes , Escherichia coli Proteins/genetics , Gene Expression Regulation, Bacterial , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/genetics , Oxo-Acid-Lyases/isolation & purification , Salicylates/chemistry , Salicylates/metabolism , Succinates/chemistry , Succinates/metabolism , Vitamin K 2/chemical synthesis
10.
Mol Genet Metab ; 91(2): 120-7, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17459752

ABSTRACT

3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) lyase adopts a (betaalpha)(8) TIM barrel structure with an additional beta9, alpha11 and alpha12 helices. Location of HMG part of the substrate has been suggested but the binding mode for the CoA moiety remains to be resolved. As mutation F305 fs(-2), which involves the last 21 residues of the protein, and mutation K48N caused 3-hydroxy-3-methylglutaric aciduria in two patients, we examined the role of the C-terminal end and Lys(48) in enzyme activity. Expression studies of various C-terminal-end-deleted and K48N-mutated proteins revealed that residues 311-313 (localized in the loop between alpha11 and alpha12 helices) and Lys(48) are essential for enzyme activity. An in silico docking model locating HMG-CoA on the surface of the enzyme implicates Asn(311) and Lys(313) in substrate binding by establishing multiple polar contacts with phosphate and ribose groups of adenosine, and Lys(48) by contacting the carboxyl group of the panthotenic acid moiety.


Subject(s)
Acyl Coenzyme A/chemistry , Oxo-Acid-Lyases/chemistry , Oxo-Acid-Lyases/genetics , Amino Acid Sequence , Conserved Sequence , Escherichia coli/metabolism , Humans , Models, Molecular , Molecular Sequence Data , Mutation , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/deficiency , Protein Binding , Protein Structure, Secondary , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics
11.
DNA Seq ; 16(2): 137-42, 2005 Apr.
Article in English | MEDLINE | ID: mdl-16147865

ABSTRACT

From the human fetal brain cDNA library constructed by our lab, a novel variant cDNA of a human gene was successfully cloned and identified. Because the gene has been named N-acetylneuraminate pyruvate lyase (NPL), accordingly we term our splice variant NPL_v2. The cDNA of NPL_v2 has a full-length open reading frame (ORF) from the nucleotide position 320 to 1225 that encodes a protein comprising 301 amino acids. SMART analysis showed that our hypothetical protein has one dihydrodipicolinate synthase (DHDPS) domain. Phosphorylation analysis of the deduced protein show that there are five phosphorylation sites including three "serine" and two "threonine" at the region that are not found in other splice variant. RT-PCR experiment revealed that our splice variant of the gene is mainly expressed in human placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocyte.


Subject(s)
Alternative Splicing , Kidney/metabolism , Leukocytes/metabolism , Liver/metabolism , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/genetics , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , DNA, Complementary/metabolism , Gene Library , Humans , Mice , Molecular Sequence Data , Open Reading Frames , Phosphorylation , Protein Structure, Tertiary , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Serine/chemistry , Swine , Threonine/chemistry , Tissue Distribution
12.
Curr Microbiol ; 50(4): 180-9, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15902464

ABSTRACT

Ubiquinone (Coenzyme Q) is an essential component of bacterial respiratory chains. The first committed step in the biosynthetic pathway is the formation of 4-hydroxybenzoate from chorismate by the enzyme chorismate pyruvate-lyase encoded by the ubiC gene. The 4-hydroxybenzoate is prenylated by 4-hydroxybenzoate octaprenyltransferase encoded by the ubiA gene. The two genes are linked at 91.5 min in the Escherichia coli chromosome. To study the regulation, operon fusions were constructed between these two genes and the lacZ gene. The fusions were introduced into the chromosome as a single copy at the lambda attachment site. Expression of beta-galactosidase was determined in strains carrying the operon fusions ubiC'-lacZ(+) ubiCA'-lacZ(+), and ubiA'-lacZ(+). In glycerol media, the highest level of expression was observed with the operon fusion ubiC'-lacZ(+). Compared with the ubiC'-lacZ(+), the ubiCA'-lacZ(+) operon fusion showed 26% of the activity while the ubiA'-lacZ(+) operon fusion had an activity of 1%. Thus, the ubiC gene is regulated by the upstream promoter while the ubiA gene lacks its own promoter. The effect of fermentable and oxidizable carbon sources on the expression of ubiC'-lacZ(+) was determined. The expression was low in the case of a fermentable carbon source, glucose, while in the presence of oxidizable carbon sources the expression increased 2- to 3-fold. When the expression of ubiC'-lacZ(+) and ubiCA'-lacZ(+) operon fusions were compared under a wide variety of conditions, the levels of beta-galactosidase varied coordinately, suggesting that the ubiCA genes are organized into an operon. The variations in transcription of the operon under different nutritional conditions and in the regulatory mutants, arcA, fnr, and narXL are presented.


Subject(s)
Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Oxo-Acid-Lyases/genetics , Ubiquinone/biosynthesis , Cloning, Molecular , Escherichia coli/enzymology , Gene Expression Regulation, Enzymologic , Genes, Bacterial , Operon , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/metabolism
13.
Planta ; 218(6): 1026-35, 2004 Apr.
Article in English | MEDLINE | ID: mdl-14740211

ABSTRACT

The major class of glucosinolates in Arabidopsis thaliana (L.) Heynh. are biosynthesized from methionine involving a three-step chain-elongation cycle. Each passage through the cycle results in the net addition of a single methylene group, with up to six cycles of elongation occurring in A. thaliana. The first reaction of the cycle is catalyzed by a methylthioalkylmalate synthase (MAMS), which condenses a omega-methylthio-2-oxoalkanoic acid with acetyl-CoA. Here we have demonstrated that MAM1, one of two similar genes in the A. thaliana ecotype Columbia, encodes a MAMS catalyzing the condensing reactions of the first two elongation cycles but not those of further cycles. The Columbia ecotype is dominated by compounds that have undergone only two elongation cycles. The A. thaliana MAM1 protein exhibits basic sequence similarity to other previously described enzymes catalyzing the condensation of 2-oxo acids and acetyl-CoA, such as isopropylmalate synthase (EC 2.3.3.13), an enzyme of leucine biosynthesis, and homocitrate synthase (EC 2.3.3.14). It also shares similar properties with them, including the catalytic requirements for a divalent metal ion and an adenine nucleotide. However, the MAM1 protein does not show activity with the substrates of any of these other enzymes, and was chromatographically separable from isopropylmalate synthase in extracts of A. thaliana. Thus, MAM1 is exclusively an enzyme of secondary metabolism, distinct from primary metabolic enzymes catalyzing similar reactions.


Subject(s)
Arabidopsis/enzymology , Arabidopsis/metabolism , Gene Expression Regulation, Plant , Oxo-Acid-Lyases/biosynthesis , Molecular Structure , Oxo-Acid-Lyases/chemistry , Oxo-Acid-Lyases/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Substrate Specificity
14.
Biotechnol Prog ; 19(1): 90-7, 2003.
Article in English | MEDLINE | ID: mdl-12573011

ABSTRACT

Metabolic engineering has been defined as a directed improvement of product formation or cellular properties by modification of specific biochemical pathways or introduction of new enzymatic reactions by recombinant DNA technology. The use of metabolic flux analysis (MFA) has helped in the understanding of the key limitation in the metabolic pathways of cultured animal cells. The MFA of the major nutrients glucose and glutamine showed that the flux of glucose to the TCA cycle and its subsequent utilization is limited as a result of the lack of certain key enzymes in the pathway. One of the key enzymes controlling this flux is pyruvate carboxylase. Introduction of this enzyme into mammalian cells has been shown to improve the utilization of glucose and limit the production of lactate and ammonia, which are deleterious to cell growth. In the present work a yeast pyruvate carboxylase gene has been introduced into mammalian (HEK 293) and insect (Trichoplusia ni High-Five) cells, resulting in the cytosolic expression of the enzyme. In both cases the resulting transfected cells were able to utilize glucose and glutamine more efficiently and produce lower amounts of lactate and ammonia. Differences in the amino acid utilization pattern were also observed, indicating changes in the basic metabolism of the cells. The performance of the transfected cells as expression systems for adenovirus and baculovirus vectors, respectively, has also been examined. The results obtained and their impact on the process development for protein and viral vector production are discussed.


Subject(s)
Bacterial Proteins , Genetic Engineering/methods , Glucose/metabolism , Glutamine/metabolism , Kidney/metabolism , Moths/metabolism , Pyruvate Carboxylase/biosynthesis , Animals , Cell Count , Cell Division/genetics , Cell Division/physiology , Gene Expression Regulation, Enzymologic/physiology , Humans , Kidney/cytology , Kidney/growth & development , Kidney/physiology , Metabolism/genetics , Metabolism/physiology , Moths/cytology , Moths/genetics , Moths/growth & development , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/genetics , Pyruvate Carboxylase/genetics , Quality Control , Transfection/methods , Viral Proteins/genetics , Viral Proteins/metabolism , Yeasts/genetics , Yeasts/metabolism
15.
J Bacteriol ; 184(9): 2439-46, 2002 May.
Article in English | MEDLINE | ID: mdl-11948157

ABSTRACT

The biosynthesis of the 2'-(5"-phosphoribosyl)-3'-dephospho-coenzyme A (CoA) prosthetic group of citrate lyase (EC 4.1.3.6), a key enzyme of citrate fermentation, proceeds via the initial formation of the precursor 2'-(5"-triphosphoribosyl)-3'-dephospho-CoA and subsequent transfer to apo-citrate lyase with removal of pyrophosphate. In Escherichia coli, the two steps are catalyzed by CitG and CitX, respectively, and the corresponding genes are part of the citrate lyase gene cluster, citCDEFXG. In the homologous citCDEFG operon of Klebsiella pneumoniae, citX is missing. A search for K. pneumoniae citX led to the identification of a second genome region involved in citrate fermentation which comprised the citWX genes and the divergent citYZ genes. The citX gene was confirmed to encode holo-citrate lyase synthase, whereas citW was shown to encode a citrate carrier, the third one identified in this species. The citYZ genes were found to encode a two-component system consisting of the sensor kinase CitY and the response regulator CitZ. Remarkably, both proteins showed >or=40% sequence identity to the citrate-sensing CitA-CitB two-component system, which is essential for the induction of the citrate fermentation genes in K. pneumoniae. A citZ insertion mutant was able to grow anaerobically with citrate, indicating that CitZ is not essential for expression of citrate fermentation genes. CitX synthesis was induced to a basal level under anaerobic conditions, independent of citrate, CitB, and CitZ, and to maximal levels during anaerobic growth with citrate as the sole carbon source. Similar to the other citrate fermentation enzymes, CitX synthesis was apparently subject to catabolite repression.


Subject(s)
Coenzyme A/genetics , Genes, Bacterial , Klebsiella pneumoniae/genetics , Multienzyme Complexes/genetics , Multigene Family , Oxo-Acid-Lyases/genetics , Amino Acid Sequence , Anaerobiosis , Carrier Proteins/genetics , Coenzyme A/metabolism , Gene Expression Regulation, Bacterial , Klebsiella pneumoniae/growth & development , Molecular Sequence Data , Multienzyme Complexes/biosynthesis , Multienzyme Complexes/chemistry , Mutagenesis, Insertional , Operon , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/chemistry , Sequence Alignment
16.
Biochemistry ; 39(31): 9438-50, 2000 Aug 08.
Article in English | MEDLINE | ID: mdl-10924139

ABSTRACT

Citrate lyase (EC 4.1.3.6) catalyzes the cleavage of citrate to acetate and oxaloacetate and is composed of three subunits (alpha, beta, and gamma). The gamma-subunit serves as an acyl carrier protein (ACP) and contains the prosthetic group 2'-(5' '-phosphoribosyl)-3'-dephospho-CoA, which is attached via a phosphodiester linkage to serine-14 in the enzyme from Klebsiella pneumoniae. In this work, we demonstrate by genetic and biochemical studies with citrate lyase of Escherichia coli and K. pneumoniae that the conversion of apo-ACP into holo-ACP is dependent on the two proteins, CitX (20 kDa) and CitG (33 kDa). In the absence of CitX, only apo-ACP was synthesized in vivo, whereas in the absence of CitG, an adenylylated ACP was produced, with the AMP residue attached to serine-14. The adenylyltransferase activity of CitX could be verified in vitro with purified CitX and apo-ACP plus ATP as substrates. Besides ATP, CTP, GTP, and UTP also served as nucleotidyl donors in vitro, showing that CitX functions as a nucleotidyltransferase. The conversion of apo-ACP into holo-ACP was achieved in vitro by incubation of apo-ACP with CitX, CitG, ATP, and dephospho-CoA. ATP could not be substituted with GTP, CTP, UTP, ADP, or AMP. In the absence of CitG or dephospho-CoA, AMP-ACP was formed. Remarkably, it was not possible to further convert AMP-ACP to holo-ACP by subsequent incubation with CitG and dephospho-CoA. This demonstrates that AMP-ACP is not an intermediate during the conversion of apo- into holo-ACP, but results from a side activity of CitX that becomes effective in the absence of its natural substrate. Our results indicate that holo-ACP formation proceeds as follows. First, a prosthetic group precursor [presumably 2'-(5' '-triphosphoribosyl)-3'-dephospho-CoA] is formed from ATP and dephospho-CoA in a reaction catalyzed by CitG. Second, holo-ACP is formed from apo-ACP and the prosthetic group precursor in a reaction catalyzed by CitX.


Subject(s)
Escherichia coli/enzymology , Multienzyme Complexes/biosynthesis , Oxo-Acid-Lyases/biosynthesis , Acyl Carrier Protein/biosynthesis , Amino Acid Sequence , Apoproteins/biosynthesis , Carbon-Sulfur Ligases/biosynthesis , Carbon-Sulfur Ligases/genetics , Coenzyme A/biosynthesis , Enzyme Precursors/metabolism , Escherichia coli/genetics , Genes, Bacterial , Molecular Sequence Data , Multienzyme Complexes/chemistry , Multienzyme Complexes/genetics , Multigene Family , Operon , Oxo-Acid-Lyases/chemistry , Oxo-Acid-Lyases/genetics , Structure-Activity Relationship
17.
Microbiology (Reading) ; 145 ( Pt 10): 2813-20, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10537203

ABSTRACT

Comamonas testosteroni TA441 degrades 3-(3-hydroxyphenyl)propionate (3HPP) via the meta pathway. A gene cluster required for degradation of 3HPP was cloned from strain TA441 and sequenced. The genes encoding six catabolic enzymes, a flavin-type hydroxylase (mhpA), extradiol dioxygenase (mhpB), 2-keto-4-pentenoate hydratase (mhpD), acetaldehyde dehydrogenase (acylating) (mhpF), 4-hydroxy-2-ketovalerate aldolase (mhpE) and the meta cleavage compound hydrolase (mhpC), were found in this cluster, encoded in this order. mhpD and mhpF were separated by two genes, orf4 and orf5, which were not necessary for growth on 3HPP. The gene mhpR, encoding a putative transcriptional activator of the IcIR family, was located adjacent to mhpA in the opposite orientation. Disruption of the mhpB or mhpR genes affected growth on 3HPP or trans-3-hydroxycinnamate. The mhpB and mhpC gene products showed high specificity for 3-(2,3-dihydroxyphenyl)propionate (DHPP) and the meta cleavage compound produced from DHPP, respectively.


Subject(s)
Comamonas testosteroni/enzymology , Comamonas testosteroni/genetics , Coumaric Acids/metabolism , Aldehyde Oxidoreductases/biosynthesis , Aldehyde Oxidoreductases/genetics , Aldehyde Oxidoreductases/metabolism , Cloning, Molecular , Genes, Bacterial , Hydro-Lyases/biosynthesis , Hydro-Lyases/genetics , Hydro-Lyases/metabolism , Mixed Function Oxygenases/biosynthesis , Mixed Function Oxygenases/genetics , Mixed Function Oxygenases/metabolism , Models, Molecular , Molecular Sequence Data , Multigene Family/genetics , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/genetics , Oxo-Acid-Lyases/metabolism , Oxygenases/biosynthesis , Oxygenases/genetics , Oxygenases/metabolism , Substrate Specificity
18.
Protein Expr Purif ; 12(3): 295-304, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9535696

ABSTRACT

The cloning and expression of the Haemophilus influenzae gene, nanA, for the putative N-acetylneuraminate lyase enzyme, also known as N-acetylneuraminic acid aldolase or sialic acid aldolase, are reported. The gene was isolated from ATCC type strain 49247 and cloned into the Escherichia coli expression vector pKKtac, which contained the strong tac promoter. Gene expression was compared with the homologous E. coli npl gene coding for the lyase. Purification protocols for the products of the nanA and npl genes are presented. Activity analysis showed that the nanA gene product is a sialic acid aldolase with more than threefold greater specific activity (6.9 IU/mg) than the enzyme from E. coli (

Subject(s)
Gene Expression Regulation, Bacterial , Haemophilus influenzae/enzymology , Oxo-Acid-Lyases/genetics , Base Sequence , Cloning, Molecular , Crystallography, X-Ray , DNA Primers/chemistry , DNA, Bacterial/isolation & purification , Electrophoresis, Polyacrylamide Gel , Escherichia coli/genetics , Gene Expression Regulation, Bacterial/genetics , Haemophilus influenzae/genetics , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/chemistry , Oxo-Acid-Lyases/isolation & purification , Polymerase Chain Reaction , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , X-Ray Diffraction
19.
Plant Cell Physiol ; 39(11): 1240-4, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9891420

ABSTRACT

The bacterial gene ubiC encodes chorismate pyruvate-lyase, an enzyme which converts chorismate to 4-hydroxybenzoate and which is not normally present in plants. The UbiC protein was expressed in tobacco, with targeting of the gene product either to the plastids or to the cytosol. In both cases, chorismate pyruvate-lyase activity and a resulting formation of 4-hydroxybenzoate was detected. This suggests that chorismate, a metabolite of the shikimate pathway, is present not only in the plastids but also in the cytosol of plant cells.


Subject(s)
Agrobacterium tumefaciens/enzymology , Escherichia coli/enzymology , Oxo-Acid-Lyases/biosynthesis , Oxo-Acid-Lyases/genetics , Agrobacterium tumefaciens/genetics , Base Sequence , Consensus Sequence , Escherichia coli/genetics , Plants, Genetically Modified , Plants, Toxic , Recombinant Proteins/biosynthesis , Sequence Alignment , Nicotiana
20.
FEBS Lett ; 414(2): 373-6, 1997 Sep 08.
Article in English | MEDLINE | ID: mdl-9315722

ABSTRACT

The ubiCA operon of Escherichia coli encodes enzymes for the first two steps of ubiquinone biosynthesis. A monolysogen (ubiC-lacZ operon fusion) was constructed to study ubiCA regulation. Expression was higher during aerobic growth than anaerobically, and increased with rate of oxygen supply. Although ubiquinone is implicated in antioxidant roles, ubiC expression was not elevated in response to hydrogen peroxide or the redox cycling agent, paraquat. Glucose repressed expression and mutation of cya (encoding adenylate cyclase) increased expression. Anaerobically utilised electron acceptors (nitrite, nitrate, fumarate) did not affect expression. ubiC expression appears to be negatively regulated by Fnr and IHF.


Subject(s)
Alkyl and Aryl Transferases , Escherichia coli/enzymology , Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Operon , Oxo-Acid-Lyases/biosynthesis , Transferases/biosynthesis , Ubiquinone/biosynthesis , Aerobiosis , Anaerobiosis , Base Sequence , Gene Expression Regulation, Bacterial/drug effects , Gene Expression Regulation, Enzymologic/drug effects , Genotype , Glucose/pharmacology , Hydrogen Peroxide/pharmacology , Kinetics , Molecular Sequence Data , Oxo-Acid-Lyases/genetics , Paraquat/pharmacology , Promoter Regions, Genetic , Recombinant Fusion Proteins/biosynthesis , Transferases/genetics , beta-Galactosidase/biosynthesis
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