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1.
Virol J ; 21(1): 132, 2024 Jun 06.
Article in English | MEDLINE | ID: mdl-38844968

ABSTRACT

Tetraparvovirus is an emerging parvovirus infecting a variety of mammals and humans, and associated with human diseases including severe acute respiratory infection and acute encephalitis syndrome. In the present study, a Tetraparvovirus ungulate 1 (formerly known as bovine hokovirus) strain HNU-CBY-2023 was identified and characterized from diseased Chinese Simmental from Hunan province, China. The nearly complete genome of HNU-CBY-2023 is 5346 nt in size and showed genomic identities of 85-95.5% to the known Tetraparvovirus ungulate 1 strains from GenBank, indicating a rather genetic variation. Phylogenetic and genetic divergence analyses indicated that Tetraparvovirus ungulate 1 could be divided into two genotypes (I and II), and HNU-CBY-2023 was clustered into genotype II. This study, for the first time, identified Tetraparvovirus ungulate 1 from domestic cattle from mainland China, which will be helpful to understand the prevalence and genetic diversity of Tetraparvovirus ungulate 1.


Subject(s)
Cattle Diseases , Genetic Variation , Genome, Viral , Genotype , Parvoviridae Infections , Phylogeny , Animals , Cattle , China , Cattle Diseases/virology , Cattle Diseases/epidemiology , Parvoviridae Infections/veterinary , Parvoviridae Infections/virology , Parvoviridae Infections/epidemiology , Genome, Viral/genetics , Parvovirinae/genetics , Parvovirinae/isolation & purification , Parvovirinae/classification , Sequence Analysis, DNA , DNA, Viral/genetics , East Asian People
2.
Euro Surveill ; 29(21)2024 May.
Article in English | MEDLINE | ID: mdl-38785091

ABSTRACT

In France, blood donations are tested in pools of 96 samples for parvovirus B19 (B19V) DNA to discard plasma for fractionation when it contains high viral loads. Between January 2015 and March 2024, B19V-positive donations decreased during the COVID-19 pandemic, followed by a strong rebound in 2023 and unusually high circulation during winter 2023/24 (ca 10 times higher December 2023-March 2024 vs the pre-pandemic period). Variations over time are probably related to measures implemented to limit SARS-CoV-2 spread.


Subject(s)
Blood Donors , COVID-19 , Parvoviridae Infections , Parvovirus B19, Human , SARS-CoV-2 , Humans , Parvovirus B19, Human/genetics , Parvovirus B19, Human/isolation & purification , Blood Donors/statistics & numerical data , France/epidemiology , Parvoviridae Infections/epidemiology , Parvoviridae Infections/blood , Parvoviridae Infections/diagnosis , Parvoviridae Infections/virology , SARS-CoV-2/genetics , SARS-CoV-2/isolation & purification , COVID-19/epidemiology , COVID-19/diagnosis , COVID-19/blood , Viral Load , DNA, Viral/blood , DNA, Viral/genetics , Seasons , Pandemics , Mass Screening , Blood Donation
3.
Virol J ; 21(1): 108, 2024 05 10.
Article in English | MEDLINE | ID: mdl-38730285

ABSTRACT

BACKGROUND: The immature and suppressed immune response makes transplanted children a special susceptible group to Parvovirus B19 (PVB19). However, the clinical features of transplanted children with PVB19 infection haven't been comprehensively described. METHODS: We searched the medical records of all the transplant recipients who attended the Children's Hospital of Fudan University from 1 Oct 2020 to 31 May 2023, and reviewed the medical literature for PVB19 infection cases among transplanted children. RESULTS: A total of 10 cases of PVB19 infection were identified in 201 transplanted children at our hospital, and the medical records of each of these cases were shown. Also, we retrieved 40 cases of PVB19 infection among transplanted children from the literature, thus summarizing a total of 50 unique cases of PVB19 infection. The median time to the first positive PVB19 DNA detection was 14 weeks post-transplantation. PVB19 IgM and IgG were detected in merely 26% and 24% of the children, respectively. The incidence of graft loss/dysfunction was as high as 36%. Hematopoietic stem cell transplant (HSCT) recipients showed higher PVB19 load, lower HGB level, greater platelet damage, lower PVB19 IgM/IgG positive rates, and more graft dysfunction than solid-organ transplant (SOT) recipients, indicating a more incompetent immune system. CONCLUSIONS: Compared with the published data of transplanted adults, transplanted children displayed distinct clinical features upon PVB19 infection, including lower PVB19 IgM/IgG positive rates, more graft dysfunction, and broader damage on hematopoietic cell lines, which was even more prominent in HSCT recipients, thus should be of greater concern.


Subject(s)
Antibodies, Viral , Hematopoietic Stem Cell Transplantation , Parvoviridae Infections , Parvovirus B19, Human , Humans , Parvovirus B19, Human/immunology , Parvovirus B19, Human/genetics , Child , Female , Male , Child, Preschool , Parvoviridae Infections/virology , Parvoviridae Infections/immunology , Hematopoietic Stem Cell Transplantation/adverse effects , Antibodies, Viral/blood , Infant , Adolescent , Immunoglobulin M/blood , Immunoglobulin G/blood , Transplant Recipients , DNA, Viral/blood , Viral Load , Organ Transplantation/adverse effects
4.
Viruses ; 16(5)2024 04 29.
Article in English | MEDLINE | ID: mdl-38793587

ABSTRACT

A massive mortality event concerning farmed Chinese tongue soles occurred in Tianjin, China, and the causative agent remains unknown. Here, a novel Cynoglossus semilaevis papillomavirus (CsPaV) and parvovirus (CsPV) were simultaneously isolated and identified from diseased fish via electron microscopy, virus isolation, genome sequencing, experimental challenges, and fluorescence in situ hybridization (FISH). Electron microscopy showed large numbers of virus particles present in the tissues of diseased fish. Viruses that were isolated and propagated in flounder gill cells (FG) induced typical cytopathic effects (CPE). The cumulative mortality of fish given intraperitoneal injections reached 100% at 7 dpi. The complete genomes of CsPaV and CsPV comprised 5939 bp and 3663 bp, respectively, and the genomes shared no nucleotide sequence similarities with other viruses. Phylogenetic analysis based on the L1 and NS1 protein sequences revealed that CsPaV and CsPV were novel members of the Papillomaviridae and Parvoviridae families. The FISH results showed positive signals in the spleen tissues of infected fish, and both viruses could co-infect single cells. This study represents the first report where novel papillomavirus and parvovirus are identified in farmed marine cultured fish, and it provides a basis for further studies on the prevention and treatment of emerging viral diseases.


Subject(s)
Fish Diseases , Flatfishes , Genome, Viral , Papillomaviridae , Parvoviridae Infections , Parvovirus , Phylogeny , Animals , Fish Diseases/virology , Fish Diseases/mortality , China , Flatfishes/virology , Parvoviridae Infections/veterinary , Parvoviridae Infections/virology , Parvovirus/genetics , Parvovirus/isolation & purification , Parvovirus/classification , Papillomaviridae/genetics , Papillomaviridae/isolation & purification , Papillomaviridae/classification , Papillomavirus Infections/virology , Papillomavirus Infections/veterinary , In Situ Hybridization, Fluorescence
5.
Viruses ; 16(5)2024 05 13.
Article in English | MEDLINE | ID: mdl-38793654

ABSTRACT

Based on several clinical observations it was hypothesized that herpesviruses may influence the replication of human bocaviruses, the second known parvoviruses that have been confirmed as human pathogens. While several cell lines support the growth of HSV-1, HBoV-1 was exclusively cultivated on air-liquid interface cultures, the latter being a rather complicated, slow, and low throughput system. One of the cell lines are T84 cells, which are derived from the lung metastasis of a colorectal tumor. In this study, we provide evidence that T84 also supports HBoV replication when cultivated as monolayers, while simultaneously being permissive for HSV-1. The cell culture model thus would enable co-infection studies of both viruses and is worth being optimized for high throughput studies with HBoV-1. Additionally, the study provides evidence for a supporting effect of HSV-1 on the replication and packaging of HBoV-1 progeny DNA into DNase-resistant viral particles.


Subject(s)
Coinfection , Herpesvirus 1, Human , Human bocavirus , Virus Replication , Herpesvirus 1, Human/physiology , Humans , Coinfection/virology , Human bocavirus/physiology , Human bocavirus/genetics , Cell Line , Cell Line, Tumor , Cell Culture Techniques/methods , Herpes Simplex/virology , Parvoviridae Infections/virology , Chlorocebus aethiops , Virus Cultivation/methods
6.
Microbiol Spectr ; 12(6): e0391423, 2024 Jun 04.
Article in English | MEDLINE | ID: mdl-38742903

ABSTRACT

Porcine parvovirus (PPV) is one of the most important pathogens that cause reproductive failure in pigs. However, the pathogenesis of PPV infection remains unclear. Proteomics is a powerful tool to understand the interaction between virus and host cells. In the present study, we analyzed the proteomics of PPV-infected PK-15 cells. A total of 32 and 345 proteins were differentially expressed at the early and replication stages, respectively. Subsequent gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes enrichment analysis showed these differentially expressed proteins were significantly enriched in pathways including toll-like receptor signaling pathway, tumor necrosis factor signaling pathway, and viral carcinogenesis. The expression of poly (rC) binding protein 1 (PCBP1) was observed to decrease after PPV infection. Overexpressed or silenced PCBP1 expression inhibited or promoted PPV infection. Our studies established a foundation for further exploration of the multiplication mechanism of PPV. IMPORTANCE: Porcine parvovirus (PPV) is a cause of reproductive failure in the swine industry. Our knowledge of PPV remains limited, and there is no effective treatment for PPV infection. Proteomics of PPV-infected PK-15 cells was conducted to identify differentially expressed proteins at 6 hours post-infection (hpi) and 36 hpi. Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis showed that various pathways participate in PPV infection. Poly (rC) binding protein 1 was confirmed to inhibit PPV replication, which provided potential targets for anti-PPV infection. Our findings improve the understanding of PPV infection and pave the way for future research in this area.


Subject(s)
Parvoviridae Infections , Parvovirus, Porcine , Proteomics , RNA-Binding Proteins , Swine Diseases , Virus Replication , Parvovirus, Porcine/genetics , Parvovirus, Porcine/physiology , Animals , Swine , Cell Line , RNA-Binding Proteins/genetics , RNA-Binding Proteins/metabolism , Parvoviridae Infections/virology , Parvoviridae Infections/metabolism , Parvoviridae Infections/veterinary , Swine Diseases/virology , Swine Diseases/metabolism , Swine Diseases/genetics , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism
7.
Virology ; 595: 110081, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38599030

ABSTRACT

Parvoviruses are known to be significant viral pathogens that infect a wide range of species globally. However, little is known about the parvoviruses circulating in Australian birds, including yellow canaries. Here, we present four parvoviral sequences including three novel parvoviruses detected from 10 yellow canaries (Crithagra flaviventris), named canary chaphamaparvovirus 1 and -2 (CaChPV1 and CaChPV2), canary dependoparvovirus 1 and -2 (CaDePV1 and CaDePV2). The whole genome sequences of CaChPV1, CaChPV2, CaDePV1, and CaDePV2 showed the highest identity with other parvoviruses at 76.4%, 75.9%, 84.0%, and 59.1%, respectively. Phylogenetic analysis demonstrated that CaChPV1 and CaChPV2 were clustered within the genus Chaphamaparvovirus. Meanwhile, CaDePV1 and CaDePV2 fall within the genus Dependoparvovirus and have the closest evolutionary relationship to the bird-associated dependoparvoviruses. Overall, this study enriched our understanding of the genetic diversity among avian parvoviruses within the Parvoviridae family.


Subject(s)
Genetic Variation , Genome, Viral , Parvoviridae Infections , Phylogeny , Animals , Parvoviridae Infections/veterinary , Parvoviridae Infections/virology , Australia , Parvovirus/genetics , Parvovirus/classification , Parvovirus/isolation & purification , Bird Diseases/virology , DNA, Viral/genetics
8.
J Virol ; 98(5): e0009324, 2024 May 14.
Article in English | MEDLINE | ID: mdl-38591899

ABSTRACT

Feline parvovirus (FPV) infection is highly fatal in felines. NS1, which is a key nonstructural protein of FPV, can inhibit host innate immunity and promote viral replication, which is the main reason for the severe pathogenicity of FPV. However, the mechanism by which the NS1 protein disrupts host immunity and regulates viral replication is still unclear. Here, we identified an FPV M1 strain that is regulated by the NS1 protein and has more pronounced suppression of innate immunity, resulting in robust replication. We found that the neutralization titer of the FPV M1 strain was significantly lower than that of the other strains. Moreover, FPV M1 had powerful replication ability, and the FPV M1-NS1 protein had heightened efficacy in repressing interferon-stimulated genes (ISGs) expression. Subsequently, we constructed an FPV reverse genetic system, which confirmed that the N588 residue of FPV M1-NS1 protein is a key amino acid that bolsters viral proliferation. Recombinant virus containing N588 also had stronger ability to inhibit ISGs, and lower ISGs levels promoted viral replication and reduced the neutralization titer of the positive control serum. Finally, we confirmed that the difference in viral replication was abolished in type I IFN receptor knockout cell lines. In conclusion, our results demonstrate that the N588 residue of the NS1 protein is a critical amino acid that promotes viral proliferation by increasing the inhibition of ISGs expression. These insights provide a reference for studying the relationship between parvovirus-mediated inhibition of host innate immunity and viral replication while facilitating improved FPV vaccine production.IMPORTANCEFPV infection is a viral infectious disease with the highest mortality rate in felines. A universal feature of parvovirus is its ability to inhibit host innate immunity, and its ability to suppress innate immunity is mainly accomplished by the NS1 protein. In the present study, FPV was used as a viral model to explore the mechanism by which the NS1 protein inhibits innate immunity and regulates viral replication. Studies have shown that the FPV-NS1 protein containing the N588 residue strongly inhibits the expression of host ISGs, thereby increasing the viral proliferation titer. In addition, the presence of the N588 residue can increase the proliferation titer of the strain 5- to 10-fold without affecting its virulence and immunogenicity. In conclusion, our findings provide new insights and guidance for studying the mechanisms by which parvoviruses suppress innate immunity and for developing high-yielding FPV vaccines.


Subject(s)
Feline Panleukopenia Virus , Viral Nonstructural Proteins , Virus Replication , Animals , Cats , Cell Line , Feline Panleukopenia Virus/genetics , Feline Panleukopenia Virus/immunology , Immunity, Innate , Mutation , Parvoviridae Infections/virology , Parvoviridae Infections/immunology , Viral Nonstructural Proteins/genetics , Viral Nonstructural Proteins/metabolism , Viral Nonstructural Proteins/immunology
9.
Viral Immunol ; 37(4): 177-185, 2024 05.
Article in English | MEDLINE | ID: mdl-38625025

ABSTRACT

Viral infections are major causes of mortality in solid-organ and hematopoietic stem cell transplant recipients. Epstein-Barr virus (EBV) and Parvovirus B19 (B19V) are among the common viral infections after transplantation and were recommended for increased screening in relevant guidelines. Therefore, the development of rapid, specific, and cost-effective diagnostic methods for EBV and B19V is of paramount importance. We applied Fluorescence of Loop Primer Upon Self-Dequenching Loop-mediated Isothermal Amplification (FLOS-LAMP) for the first time to develop a novel multiplex assay for the detection of EBV and B19V; the fluorophore attached to the probe are self-quenched in unbound state. After binding to the dumbbell-shaped DNA target, the fluorophore is dequenched, resulting in fluorescence development. The novel multiplex FLOS-LAMP assay was optimized by testing various ratios of primer sets. This novel assay, with great specificity, did not cross-react with the common virus. For the detection of EBV and B19V, the limits of detection could reach 969 and 798 copies/µL, respectively, and the assay could be completed within 25 min. Applying this novel assay to detect 200 clinical transplant individuals indicated that the novel assay had high specificity and good sensitivity. We developed multiplex FLOS-LAMP assay for the detection of EBV and B19V, which has the potential to become an important tool for clinical transplant patient screening.


Subject(s)
Epstein-Barr Virus Infections , Herpesvirus 4, Human , Molecular Diagnostic Techniques , Nucleic Acid Amplification Techniques , Parvovirus B19, Human , Sensitivity and Specificity , Humans , Herpesvirus 4, Human/genetics , Herpesvirus 4, Human/isolation & purification , Nucleic Acid Amplification Techniques/methods , Parvovirus B19, Human/genetics , Parvovirus B19, Human/isolation & purification , Epstein-Barr Virus Infections/diagnosis , Epstein-Barr Virus Infections/virology , Molecular Diagnostic Techniques/methods , Fluorescence , DNA Primers/genetics , Transplant Recipients , Parvoviridae Infections/diagnosis , Parvoviridae Infections/virology , DNA, Viral/genetics , Organ Transplantation
10.
Virology ; 595: 110041, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38555807

ABSTRACT

Canine parvovirus (CPV) is the main cause of viral diarrhea in dogs. CPV became a global disease in 1978 and was endemic all over the world. CPV-2 was the first strain to be identified, but with genetic mutations, new genotypes such as CPV-2a/2b/2c/new-2a/new-2b have emerged. In this study, 128 fecal samples of stray dogs suspected of CPV-2 infection were collected from January to March 2021 in Shanghai, China. All samples were screened by PCR and further analyzed by VP2 gene. The positive rate of CPV-2 was 9.4% (12/128), of which 6 CPV-2 isolates were successfully isolated. Phylogenetic tree analysis showed that 4 isolates were CPV-2c genotype and 2 were new-CPV-2b genotype. VP-2 is a key protein that determines the antigenic properties, host range and receptor binding of cpv-2. The results of VP2 amino acid sequence analysis in this study showed that the CPV-2c isolated strain was the same as the previous strains reported in China, including F267Y, Y324I, Q370R and A5G mutations in addition to the typical N426E mutations. Similarly, in addition to the conventional N426D, S297A, F267Y and Y324I mutations, the new CPV-2b isolate also had a new mutation of T440A. This study further confirmed the prevalence of CPV-2c and new-CPV-2b in Shanghai, and also found a new mutation site of new-CPV-2c, which provided a theoretical basis for further enriching the epidemiological data of CPV-2 in Shanghai, as well as the development of vaccines and the prevention and control of the disease.


Subject(s)
Capsid Proteins , Dog Diseases , Feces , Genotype , Parvoviridae Infections , Parvovirus, Canine , Phylogeny , Animals , Parvovirus, Canine/genetics , Parvovirus, Canine/isolation & purification , Parvovirus, Canine/classification , Dogs , China/epidemiology , Parvoviridae Infections/veterinary , Parvoviridae Infections/virology , Parvoviridae Infections/epidemiology , Dog Diseases/virology , Dog Diseases/epidemiology , Feces/virology , Capsid Proteins/genetics , Mutation
11.
J Virol ; 98(3): e0169523, 2024 Mar 19.
Article in English | MEDLINE | ID: mdl-38349085

ABSTRACT

Histone modifications function in both cellular and viral gene expression. However, the roles of acetyltransferases and histone acetylation in parvoviral infection remain poorly understood. In the current study, we found the histone deacetylase (HDAC) inhibitor, trichostatin A (TSA), promoted the replication and transcription of parvovirus minute virus of canines (MVC). Notably, the expression of host acetyltransferases KAT5, GTF3C4, and KAT2A was increased in MVC infection, as well as H4 acetylation (H4K12ac). KAT5 is not only responsible for H4K12ac but also crucial for viral replication and transcription. The viral nonstructural protein NS1 interacted with KAT5 and enhanced its expression. Further study showed that Y44 in KAT5, which may be tyrosine-phosphorylated, is indispensable for NS1-mediated enhancement of KAT5 and efficient MVC replication. The data demonstrated that NS1 interacted with KAT5, which resulted in an enhanced H4K12ac level to promote viral replication and transcription, implying the epigenetic addition of H4K12ac in viral chromatin-like structure by KAT5 is vital for MVC replication.IMPORTANCEParvoviral genomes are chromatinized with host histones. Therefore, histone acetylation and related acetyltransferases are required for the virus to modify histones and open densely packed chromatin structures. This study illustrated that histone acetylation status is important for MVC replication and transcription and revealed a novel mechanism that the viral nonstructural protein NS1 hijacks the host acetyltransferase KAT5 to enhance histone acetylation of H4K12ac, which relies on a potential tyrosine phosphorylation site, Y44 in KAT5. Other parvoviruses share a similar genome organization and coding potential and may adapt a similar strategy for efficient viral replication and transcription.


Subject(s)
Lysine Acetyltransferase 5 , Parvoviridae Infections , Animals , Dogs , Acetylation , Acetyltransferases/metabolism , Chromatin , Histone Acetyltransferases/genetics , Histone Acetyltransferases/metabolism , Histones/genetics , Histones/metabolism , Parvoviridae Infections/metabolism , Parvoviridae Infections/veterinary , Parvoviridae Infections/virology , Tyrosine/metabolism , Viral Nonstructural Proteins/genetics , Viral Nonstructural Proteins/metabolism , Cell Line , Dog Diseases/metabolism , Dog Diseases/virology , Lysine Acetyltransferase 5/metabolism
12.
Braz J Microbiol ; 55(2): 1979-1986, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38407780

ABSTRACT

Canine Parvovirus type 2 (CPV-2) is a highly contagious virus that can cause severe systemic disease with gastroenteric symptoms in dogs, particularly in young puppies. Originating from the feline parvovirus in the late 1970s, it swiftly propagated globally, instigating a pandemic in dogs. Despite vaccination advancements, CPV-2 remains a substantial challenge for veterinary professionals and pet owners. This study aimed to contribute knowledge about the current situation of CPV-2 among dogs in southern Brazil. In this study, the sera of 125 dogs (mostly with gastroenteritis symptoms) were screened for antibodies against CPV-2 and their faeces for the virus itself. The results showed that 40% (50/125) of dogs were infected with CPV-2. Most animals (65.5%) had previously been exposed to CPV-2 (with serotitres equal or above 1:40), and only 37.6% had protective antibody titres equal or above 1:80. The findings have also demonstrated that vaccination against CPV-2 significantly reduced the risk of infection, with positive cases decreasing from 56.9% (unvaccinated) to 2.0% (fully vaccinated). Furthermore, the prevalence of CPV-2 decreased as dogs aged, with younger dogs and those with an incomplete or non-existent vaccination history at the highest risk of infection. In conclusion, this study provides valuable insight into the prevalence and risk factors associated with CPV-2 infection in dogs in southern Brazil, thereby providing valuable knowledge for the improvement of veterinary care and pet health.


Subject(s)
Antibodies, Viral , Dog Diseases , Gastroenteritis , Parvoviridae Infections , Parvovirus, Canine , Dogs , Animals , Parvovirus, Canine/immunology , Parvovirus, Canine/genetics , Dog Diseases/virology , Dog Diseases/epidemiology , Dog Diseases/immunology , Brazil/epidemiology , Parvoviridae Infections/veterinary , Parvoviridae Infections/epidemiology , Parvoviridae Infections/immunology , Parvoviridae Infections/virology , Gastroenteritis/virology , Gastroenteritis/epidemiology , Gastroenteritis/veterinary , Antibodies, Viral/blood , Feces/virology , Male , Female , Vaccination/veterinary
13.
J Virol ; 97(7): e0016123, 2023 07 27.
Article in English | MEDLINE | ID: mdl-37367301

ABSTRACT

Parvoviruses are among the smallest and superficially simplest animal viruses, infecting a broad range of hosts, including humans, and causing some deadly infections. In 1990, the first atomic structure of the canine parvovirus (CPV) capsid revealed a 26-nm-diameter T=1 particle made up of two or three versions of a single protein, and packaging about 5,100 nucleotides of single-stranded DNA. Our structural and functional understanding of parvovirus capsids and their ligands has increased as imaging and molecular techniques have advanced, and capsid structures for most groups within the Parvoviridae family have now been determined. Despite those advances, significant questions remain unanswered about the functioning of those viral capsids and their roles in release, transmission, or cellular infection. In addition, the interactions of capsids with host receptors, antibodies, or other biological components are also still incompletely understood. The parvovirus capsid's apparent simplicity likely conceals important functions carried out by small, transient, or asymmetric structures. Here, we highlight some remaining open questions that may need to be answered to provide a more thorough understanding of how these viruses carry out their various functions. The many different members of the family Parvoviridae share a capsid architecture, and while many functions are likely similar, others may differ in detail. Many of those parvoviruses have not been experimentally examined in detail (or at all in some cases), so we, therefore, focus this minireview on the widely studied protoparvoviruses, as well as the most thoroughly investigated examples of adeno-associated viruses.


Subject(s)
Parvoviridae , Animals , Humans , Capsid/ultrastructure , Capsid Proteins/chemistry , Capsid Proteins/metabolism , DNA, Viral/metabolism , Parvoviridae/genetics , Parvoviridae/ultrastructure , Parvoviridae Infections/metabolism , Parvoviridae Infections/virology , Dependovirus/genetics , Dependovirus/metabolism , Dependovirus/ultrastructure
14.
BMC Vet Res ; 18(1): 195, 2022 May 23.
Article in English | MEDLINE | ID: mdl-35606875

ABSTRACT

BACKGROUND: Feline parvovirus (FPV) is a member of the family Parvoviridae, which is a major enteric pathogen of cats worldwide. This study aimed to investigate the prevalence of feline parvovirus in Beijing of China and analyze the genetic features of detected viruses. RESULTS: In this study, a total of 60 (8.5%) parvovirus-positive samples were detected from 702 cat fecal samples using parvovirus-specific PCR. The complete VP2 genes were amplified from all these samples. Among them, 55 (91.7%) sequences were characterized as FPV, and the other five (8.3%) were typed as canine parvovirus type 2 (CPV-2) variants, comprised of four CPV-2c and a new CPV-2b strain. In order to investigate the origin of CPV-2 variants in cats, we amplified full-length VP2 genes from seven fecal samples of dogs infected with CPV-2, which were further classified as CPV-2c. The sequences of new CPV-2b/MT270586 and CPV-2c/MT270587 detected from feline samples shared 100% identity with previous canine isolates KT156833 and MF467242 respectively, suggesting the CPV-2 variants circulating in cats might be derived from dogs. Sequence analysis indicated new mutations, Ala91Ser and Ser192Phe, in the FPV sequences, while obtained CPV-2c carried mutations reported in Asian CPV variants, showing they share a common evolutionary pattern with the Asian 2c strains. Interestingly, the FPV sequence (MT270571), displaying four CPV-specific residues, was found to be a putative recombinant sequence between CPV-2c and FPV. Phylogenetic analysis of the VP2 gene showed that amino acid and nucleotide mutations promoted the evolution of FPV and CPV lineages. CONCLUSIONS: Our findings will be helpful to further understand the circulation and evolution of feline and canine parvovirus in Beijing.


Subject(s)
Cat Diseases , Feline Panleukopenia Virus , Parvoviridae Infections , Animals , Beijing , Cat Diseases/epidemiology , Cat Diseases/genetics , Cat Diseases/virology , Cats/virology , Dog Diseases/epidemiology , Dog Diseases/genetics , Dog Diseases/virology , Dogs , Feces/virology , Feline Panleukopenia Virus/genetics , Feline Panleukopenia Virus/isolation & purification , Parvoviridae Infections/epidemiology , Parvoviridae Infections/genetics , Parvoviridae Infections/veterinary , Parvoviridae Infections/virology , Parvovirus, Canine/genetics , Parvovirus, Canine/isolation & purification , Phylogeny
15.
Viruses ; 14(2)2022 01 18.
Article in English | MEDLINE | ID: mdl-35215764

ABSTRACT

Porcine parvovirus (PPV) is the main pathogen of reproductive disorders. In recent years, a new type of porcine parvovirus has been discovered and named porcine parvovirus 2 to 7 (PPV2-PPV7), and it is associated with porcine circovirus type 2 in pigs. Codon usage patterns and their effects on the evolution and host adaptation of different PPV sub-types are still largely unknown. Here, we define six main sub-types based on the Bayesian method of structural proteins of each sub-type of PPV, including PPV2, PPV3, PPV4, PPV5, PPV6, and PPV7, which show different degrees of codon usage preferences. The effective number of codons (ENC) indicates that all PPV sub-types have low codon bias. According to the codon adaptation index (CAI), PPV3 and PPV7 have the highest similarity with the host, which is related to the main popular tendency of the host in the field; according to the frequency of optimal codons (FOP), PPV7 has the highest frequency of optimal codons, indicating the most frequently used codons in its genes; and according to the relative codon deoptimization index (RCDI), PPV3 has a higher degree. Therefore, it is determined that mutational stress has a certain impact on the codon usage preference of PPV genes, and natural selection plays a very decisive and dominant role in the codon usage pattern. Our research provides a new perspective on the evolution of porcine parvovirus (PPV) and may help provide a new method for future research on the origin, evolutionary model, and host adaptation of PPV.


Subject(s)
Codon Usage , Genetic Variation , Host Adaptation , Parvoviridae Infections/virology , Parvovirus, Porcine/genetics , Swine Diseases/virology , Animals , Bayes Theorem , Evolution, Molecular , Genotype , Mutation , Phylogeny , Selection, Genetic , Swine
16.
Infect Genet Evol ; 98: 105225, 2022 03.
Article in English | MEDLINE | ID: mdl-35101636

ABSTRACT

Canine parvovirus type 2 (CPV-2) is a relevant pathogen for dogs and causes a severe disease in carnivore species. CPV-2 reached pandemic proportions after the 1970s with the worldwide dissemination, generating antigenic and genetic variants (CPV-2a, CPV-2b, and CPV-2c) with different pathobiology in comparison with the original type CPV-2. The present study aimed to assess the current global CPV-2 molecular phylogeny and to analyze genetic diversity and temporal spreading of variants from Brazil. A total of 284 CPV-2 whole-genome sequences (WGS) and 684 VP2 complete genes (including 23 obtained in the present study) were compared to analyze phylogenetic relationships. Bayesian coalescent analysis estimated the time to the most recent common ancestor (tMRCA) and the population dynamics of the different CPV-2 lineages in the last decades. The WGS phylogenetic tree demonstrated two main clades disseminated worldwide today. The VP2 gene tree showed a total of four well-defined clades distributed in different geographic regions, including one with CPV-2 sequences exclusive from Brazil. These clades do not have a relationship with the previous classification into CPV-2a, CPV-2b, and CPV-2c, despite some having a predominance of one or more antigenic types. Temporal analysis demonstrated that the main CPV-2 clades evolved within a few years (from the 1980s to 1990s) in North America and they spread worldwide afterwards. Population dynamics analysis demonstrated that CPV-2 presented a major dissemination increase at the end of the 1980s / beginning of the 1990s followed by a period of stability and a second minor increase from 2000 to 2004.


Subject(s)
Dog Diseases/virology , Genetic Variation , Parvoviridae Infections/veterinary , Parvovirus, Canine/genetics , Phylogeny , Animals , Brazil , Dog Diseases/transmission , Dogs , Parvoviridae Infections/transmission , Parvoviridae Infections/virology , Parvovirus, Canine/classification
17.
Microbiol Spectr ; 10(1): e0253221, 2022 02 23.
Article in English | MEDLINE | ID: mdl-35080421

ABSTRACT

Canine distemper virus (CDV) and Canine parvovirus (CPV) can cause deadly infections in wildlife and companion animals. In this report, we screened serum from free-ranging eastern coyotes (Canis latrans; N = 268), red foxes (Vulpes vulpes; N = 63), and gray foxes (Urocyon cinereoargenteus; N = 16) from Pennsylvania, USA, for antibodies (Abs) to CDV and CPV. This comprehensive screening was achieved using a commercially available enzyme-linked immunosorbent assay (ELISA)-based colorimetric assay. Abs to CDV and CPV were detected in 25.4% and 45.5% of coyotes, 36.5% and 52.4% of red foxes, and 12.5% and 68.8% of gray foxes, respectively. Abs to both viruses were detected in 9.7% of coyotes, 19.1% of red foxes, and 12.5% of gray foxes. This study demonstrates significant wildlife exposure in a northeastern state to CDV and CPV. As wildlife species continue to urbanize, the probability of spillover between domestic animals and wildlife will increase. Ongoing surveillance of wildlife for CDV and CPV exposure is warranted. IMPORTANCECanine distemper virus (CDV) and Canine parvovirus (CPV) are significant health threats to domestic dogs (Canis familiaris) and wildlife. CDV and CPV have been identified in diverse vertebrates, including endangered wildlife species. Susceptibility to these viral pathogens varies significantly among geographic regions and between host species. High morbidity and mortality have been reported with infection by either virus in susceptible species, including dogs. As humans and companion animals encroach on wildlife habitat, and as wildlife becomes increasingly urbanized, the potential for transmission between species increases. This study assessed CPV and CDV Ab prevalence in wild canids (eastern coyotes, red foxes, and gray foxes) harvested in Pennsylvania between 2015 and 2020. High Ab prevalence was demonstrated for both viruses in each species. Ongoing monitoring of CPV and CDV in wildlife and increased efforts to vaccinate dogs and prevent spillover events are essential.


Subject(s)
Coyotes/virology , Disease Reservoirs/virology , Distemper Virus, Canine/isolation & purification , Dog Diseases/virology , Foxes/virology , Parvoviridae Infections/veterinary , Animals , Animals, Wild/virology , Antibodies, Viral/blood , Coyotes/blood , Distemper Virus, Canine/classification , Distemper Virus, Canine/genetics , Distemper Virus, Canine/immunology , Dog Diseases/transmission , Dogs , Enzyme-Linked Immunosorbent Assay , Foxes/blood , Parvoviridae Infections/epidemiology , Parvoviridae Infections/transmission , Parvoviridae Infections/virology , Parvovirus, Canine/classification , Parvovirus, Canine/genetics , Parvovirus, Canine/isolation & purification , Pennsylvania
18.
J Virol ; 96(3): e0110321, 2022 02 09.
Article in English | MEDLINE | ID: mdl-34851146

ABSTRACT

Adeno-associated virus (AAV) is extensively used as a viral vector to deliver therapeutic genes during human gene therapy. A high-affinity cellular receptor (AAVR) for most serotypes was recently identified; however, its biological function as a gene product remains unclear. In this study, we used AAVR knockdown cell models to show that AAVR depletion significantly attenuated cells to activate unfolded protein response (UPR) pathways when exposed to the endoplasmic reticulum (ER) stress inducer, tunicamycin. By analyzing three major UPR pathways, we found that ATF6 signaling was most affected in an AAVR-dependent fashion, distinct from CHOP and XBP1 branches. AAVR capacity in UPR regulation required the full native AAVR protein, and AAV2 capsid binding to the receptor altered ATF6 dynamics. Conversely, the transduction efficiency of AAV2 was associated with changes in ATF6 signaling in host cells following treatment with different small molecules. Thus, AAVR served as an inhibitory molecule to repress UPR responses via a specificity for ATF6 signaling, and the AAV2 infection route involved the release from AAVR-mediated ATF6 repression, thereby facilitating viral intracellular trafficking and transduction. IMPORTANCE The native function of the AAVR as an ER-Golgi localized protein is largely unknown. We showed that AAVR acted as a functional molecule to regulate UPR signaling under induced ER stress. AAVR inhibited the activation of the transcription factor, ATF6, whereas receptor binding to AAV2 released the suppression effects. This finding has expanded our understanding of AAV infection biology in terms of the physiological properties of AAVR in host cells. Importantly, our research provides a possible strategy which may improve the efficiency of AAV-mediated gene delivery during gene therapy.


Subject(s)
Activating Transcription Factor 6/metabolism , Dependovirus/physiology , Endoplasmic Reticulum Stress , Parvoviridae Infections/metabolism , Parvoviridae Infections/virology , Receptors, Cell Surface/metabolism , Unfolded Protein Response , Cell Line , Endoplasmic Reticulum Stress/drug effects , Gene Knockdown Techniques , HeLa Cells , Hepatocytes , Host-Pathogen Interactions , Humans , Organ Specificity , Receptors, Cell Surface/genetics , Signal Transduction , Transduction, Genetic , Tunicamycin/metabolism , Virus Replication
19.
J Med Virol ; 94(2): 594-600, 2022 02.
Article in English | MEDLINE | ID: mdl-30982975

ABSTRACT

OBJECTIVES: The aim of this study was to evaluate the occurrence of human bocavirus (HBoV) and to determine viral loads in samples of patients admitted for allogeneic hematopoietic stem cell transplantation (allo-HSCT). METHODS: Fecal and serum samples were collected from 19 patients, during a 24-month period. Samples were screened by quantitative polymerase chain reaction TaqMan assay, with specific probe and primers targeting the NP1 gene of all HBoVs genotypes (HBoV-1 to - 4), and viral loads were determined using serial dilutions of a recombinant plasmid. RESULTS: HBoV DNA was detected in 42.1% (8 of 19) of the patients in at least one type of sample (feces and/or serum) during the study period, with 75% (6 of 8) of the patients being positive in both types of sample. Viral shedding in feces had a median of 26 days (range, 5 to 121) and viremia was detected in 87.5% (7 of 8) of the patients. The HBoV loads in fecal samples were higher than in sera and, in most cases, HBoV was detected earlier in fecal than in sera samples. In six HBoV-positive patients (6 of 8) diarrhea was observed concomitantly to viral detection in fecal samples. CONCLUSIONS: A high frequency and loads of HBoV in allo-HSCT recipients was observed, especially in fecal samples. Positivity in fecal samples was an early predictor of HBoV presence.


Subject(s)
Feces/virology , Hematopoietic Stem Cell Transplantation , Human bocavirus/genetics , Parvoviridae Infections/virology , Viremia/blood , Adolescent , Adult , Brazil , Female , Genotype , Hospitalization , Human bocavirus/isolation & purification , Humans , Longitudinal Studies , Male , Middle Aged , Viral Load , Virus Shedding , Young Adult
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