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1.
Photosynth Res ; 147(2): 211-227, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33393063

ABSTRACT

C4-like plants represent the penultimate stage of evolution from C3 to C4 plants. Although Coleataenia prionitis (formerly Panicum prionitis) has been described as a C4 plant, its leaf anatomy and gas exchange traits suggest that it may be a C4-like plant. Here, we reexamined the leaf structure and biochemical and physiological traits of photosynthesis in this grass. The large vascular bundles were surrounded by two layers of bundle sheath (BS): a colorless outer BS and a chloroplast-rich inner BS. Small vascular bundles, which generally had a single BS layer with various vascular structures, also occurred throughout the mesophyll together with BS cells not associated with vascular tissue. The mesophyll cells did not show a radial arrangement typical of Kranz anatomy. These features suggest that the leaf anatomy of C. prionitis is on the evolutionary pathway to a complete C4 Kranz type. Phosphoenolpyruvate carboxylase (PEPC) and pyruvate, Pi dikinase occurred in the mesophyll and outer BS. Glycine decarboxylase was confined to the inner BS. Ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) accumulated in the mesophyll and both BSs. C. prionitis had biochemical traits of NADP-malic enzyme type, whereas its gas exchange traits were close to those of C4-like intermediate plants rather than C4 plants. A gas exchange study with a PEPC inhibitor suggested that Rubisco in the mesophyll could fix atmospheric CO2. These data demonstrate that C. prionitis is not a true C4 plant but should be considered as a C4-like plant.


Subject(s)
Carbon Dioxide/metabolism , Photosynthesis , Poaceae/physiology , Chloroplasts/enzymology , Chloroplasts/physiology , Chloroplasts/ultrastructure , Glycine Dehydrogenase (Decarboxylating)/metabolism , Malate Dehydrogenase/metabolism , Mesophyll Cells/enzymology , Mesophyll Cells/physiology , Mesophyll Cells/ultrastructure , Phenotype , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/metabolism , Plant Leaves/enzymology , Plant Leaves/physiology , Plant Leaves/ultrastructure , Plant Proteins/metabolism , Poaceae/enzymology , Poaceae/ultrastructure , Ribulose-Bisphosphate Carboxylase/metabolism
2.
Plant Physiol ; 176(2): 1573-1586, 2018 02.
Article in English | MEDLINE | ID: mdl-29233849

ABSTRACT

Isoprene is synthesized via the chloroplastic 2-C-methyl-d-erythritol 4-phosphate/1-deoxy-d-xylulose 5-phosphate pathway (MEP/DOXP), and its synthesis is directly related to photosynthesis, except under high CO2 concentration, when the rate of photosynthesis increases but isoprene emission decreases. Suppression of MEP/DOXP pathway activity by high CO2 has been explained either by limited supply of the cytosolic substrate precursor, phosphoenolpyruvate (PEP), into chloroplast as the result of enhanced activity of cytosolic PEP carboxylase or by limited supply of energetic and reductive equivalents. We tested the PEP-limitation hypotheses by feeding leaves with the PEP carboxylase competitive inhibitors malate and diethyl oxalacetate (DOA) in the strong isoprene emitter hybrid aspen (Populus tremula × Populus tremuloides). Malate feeding resulted in the inhibition of net assimilation, photosynthetic electron transport, and isoprene emission rates, but DOA feeding did not affect any of these processes except at very high application concentrations. Both malate and DOA did not alter the sensitivity of isoprene emission to high CO2 concentration. Malate inhibition of isoprene emission was associated with enhanced chloroplastic reductive status that suppressed light reactions of photosynthesis, ultimately leading to reduced isoprene substrate dimethylallyl diphosphate pool size. Additional experiments with altered oxygen concentrations in conditions of feedback-limited and non-feedback-limited photosynthesis further indicated that changes in isoprene emission rate in control and malate-inhibited leaves were associated with changes in the share of ATP and reductive equivalent supply for isoprene synthesis. The results of this study collectively indicate that malate importantly controls the chloroplast reductive status and, thereby, affects isoprene emission, but they do not support the hypothesis that cytosolic metabolite availability alters the response of isoprene emission to changes in atmospheric composition.


Subject(s)
Butadienes/metabolism , Carbon Dioxide/metabolism , Hemiterpenes/metabolism , Malates/pharmacology , Pentanes/metabolism , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Populus/metabolism , Chloroplasts/metabolism , Cytosol/metabolism , Organophosphorus Compounds/metabolism , Oxygen/metabolism , Photosynthesis/drug effects , Plant Leaves/drug effects , Plant Leaves/metabolism , Plant Proteins/antagonists & inhibitors , Populus/drug effects , Propionates/pharmacology
3.
FEBS Lett ; 591(20): 3369-3377, 2017 10.
Article in English | MEDLINE | ID: mdl-28889573

ABSTRACT

Phosphoenolpyruvate carboxylase (PEPC) is a key enzyme in the C4 photosynthetic pathway of many of the world's worst weeds and a valuable target to develop C4 plant-selective herbicides. By virtual screening, analog synthesis, and in vitro validation, we identified pyrazolidine-3,5-diones as a new class of small molecules with inhibitory potential down to the submicromolar range against C4 PEPC and a selectivity factor of up to 16 over C3 PEPC. No other biological activity has yet been reported for the best compound, (3-bromophenyl)-4-(3-hydroxybenzylidene)-pyrazolidine-3,5-dione. A systematic variation in the substituents allowed the derivation of a qualitative structure-activity relationship. These findings make this compound class highly interesting for further investigations toward generating potent, C4 plant-selective herbicides with a low potential for unwanted effects.


Subject(s)
Herbicides/chemistry , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Plant Proteins/antagonists & inhibitors , Pyrazoles/chemistry , Asteraceae/drug effects , Asteraceae/enzymology , Asteraceae/growth & development , Cloning, Molecular , Drug Design , Enzyme Assays , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Herbicides/chemical synthesis , Herbicides/pharmacology , High-Throughput Screening Assays , Isoenzymes/antagonists & inhibitors , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Molecular Docking Simulation , Phosphoenolpyruvate Carboxylase/chemistry , Phosphoenolpyruvate Carboxylase/genetics , Phosphoenolpyruvate Carboxylase/metabolism , Photosynthesis/drug effects , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Weeds/drug effects , Plant Weeds/enzymology , Plant Weeds/growth & development , Pyrazoles/chemical synthesis , Pyrazoles/pharmacology , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , User-Computer Interface
4.
Sci Rep ; 7: 41080, 2017 01 24.
Article in English | MEDLINE | ID: mdl-28117365

ABSTRACT

Phosphoenolpyruvate carboxylase (PEPC) is an important enzyme for CO2 fixation and primary metabolism in photosynthetic organisms including cyanobacteria. The kinetics and allosteric regulation of PEPCs have been studied in many organisms, but the biochemical properties of PEPC in the unicellular, non-nitrogen-fixing cyanobacterium Synechocystis sp. PCC 6803 have not been clarified. In this study, biochemical analysis revealed that the optimum pH and temperature of Synechocystis 6803 PEPC proteins were 7.3 and 30 °C, respectively. Synechocystis 6803 PEPC was found to be tolerant to allosteric inhibition by several metabolic effectors such as malate, aspartate, and fumarate compared with other cyanobacterial PEPCs. Comparative sequence and biochemical analysis showed that substitution of the glutamate residue at position 954 with lysine altered the enzyme so that it was inhibited by malate, aspartate, and fumarate. PEPC of the nitrogen-fixing cyanobacterium Anabaena sp. PCC 7120 was purified, and its activity was inhibited in the presence of malate. Substitution of the lysine at position 946 (equivalent to position 954 in Synechocystis 6803) with glutamate made Anabaena 7120 PEPC tolerant to malate. These results demonstrate that the allosteric regulation of PEPC in cyanobacteria is determined by a single amino acid residue, a characteristic that is conserved in different orders.


Subject(s)
Anabaena/enzymology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Synechocystis/enzymology , Allosteric Regulation , Amino Acid Sequence , Bacterial Proteins/antagonists & inhibitors , Kinetics , Phosphoenolpyruvate Carboxylase/chemistry , Phosphoenolpyruvate Carboxylase/metabolism , Sequence Analysis, Protein
5.
Sci Rep ; 6: 27333, 2016 06 06.
Article in English | MEDLINE | ID: mdl-27263468

ABSTRACT

Weeds are a challenge for global food production due to their rapidly evolving resistance against herbicides. We have identified chalcones as selective inhibitors of phosphoenolpyruvate carboxylase (PEPC), a key enzyme for carbon fixation and biomass increase in the C4 photosynthetic pathway of many of the world's most damaging weeds. In contrast, many of the most important crop plants use C3 photosynthesis. Here, we show that 2',3',4',3,4-Pentahydroxychalcone (IC50 = 600 nM) and 2',3',4'-Trihydroxychalcone (IC50 = 4.2 µM) are potent inhibitors of C4 PEPC but do not affect C3 PEPC at a same concentration range (selectivity factor: 15-45). Binding and modeling studies indicate that the active compounds bind at the same site as malate/aspartate, the natural feedback inhibitors of the C4 pathway. At the whole plant level, both substances showed pronounced growth-inhibitory effects on the C4 weed Amaranthus retroflexus, while there were no measurable effects on oilseed rape, a C3 plant. Growth of selected soil bacteria was not affected by these substances. Our chalcone compounds are the most potent and selective C4 PEPC inhibitors known to date. They offer a novel approach to combat C4 weeds based on a hitherto unexplored mode of allosteric inhibition of a C4 plant key enzyme.


Subject(s)
Amaranthus/drug effects , Amaranthus/growth & development , Chalcones/metabolism , Enzyme Inhibitors/metabolism , Herbicides/metabolism , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Bacteria/drug effects , Bacteria/growth & development , Brassica napus/drug effects , Brassica napus/growth & development , Inhibitory Concentration 50
6.
FEBS Lett ; 588(12): 2101-6, 2014 Jun 05.
Article in English | MEDLINE | ID: mdl-24815687

ABSTRACT

Phosphoenolpyruvate carboxylase (PEPC) is a key enzyme of C4 photosynthesis. Besides, non-photosynthetic isoforms of PEPC are found in bacteria and all types of plants, although not in animals or fungi. A single residue in the allosteric feedback inhibitor site of PEPC was shown to adjust the affinity of the photosynthetic and non-photosynthetic isoforms for feedback inhibition by metabolites of the C4 pathway. Here, we applied computational screening and biochemical analyses to identify molecules that selectively inhibit C4 PEPC, but have no effect on the activity of non-photosynthetic PEPCs. We found two types of selective inhibitors, catechins and quinoxalines. Binding constants in the lower µM range and a strong preference for C4 PEPC qualify the quinoxaline compounds as potential selective herbicides to combat C4 weeds.


Subject(s)
Crops, Agricultural , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Photosynthesis/drug effects , Plant Weeds/drug effects , Weed Control/methods , Allosteric Regulation/drug effects , Models, Molecular , Phosphoenolpyruvate Carboxylase/chemistry , Phosphoenolpyruvate Carboxylase/metabolism , Plant Weeds/enzymology , Plant Weeds/metabolism , Protein Conformation
7.
PLoS Pathog ; 10(1): e1003876, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24453970

ABSTRACT

Phospoenolpyruvate carboxylase (PEPC) is absent from humans but encoded in the Plasmodium falciparum genome, suggesting that PEPC has a parasite-specific function. To investigate its importance in P. falciparum, we generated a pepc null mutant (D10(Δpepc) ), which was only achievable when malate, a reduction product of oxaloacetate, was added to the growth medium. D10(Δpepc) had a severe growth defect in vitro, which was partially reversed by addition of malate or fumarate, suggesting that pepc may be essential in vivo. Targeted metabolomics using (13)C-U-D-glucose and (13)C-bicarbonate showed that the conversion of glycolytically-derived PEP into malate, fumarate, aspartate and citrate was abolished in D10(Δpepc) and that pentose phosphate pathway metabolites and glycerol 3-phosphate were present at increased levels. In contrast, metabolism of the carbon skeleton of (13)C,(15)N-U-glutamine was similar in both parasite lines, although the flux was lower in D10(Δpepc); it also confirmed the operation of a complete forward TCA cycle in the wild type parasite. Overall, these data confirm the CO2 fixing activity of PEPC and suggest that it provides metabolites essential for TCA cycle anaplerosis and the maintenance of cytosolic and mitochondrial redox balance. Moreover, these findings imply that PEPC may be an exploitable target for future drug discovery.


Subject(s)
Acids, Acyclic/metabolism , Erythrocytes/diagnostic imaging , Phosphoenolpyruvate Carboxylase/metabolism , Plasmodium falciparum/enzymology , Protozoan Proteins/metabolism , Citric Acid Cycle/physiology , Erythrocytes/metabolism , Genome, Protozoan/physiology , Humans , Malaria, Falciparum/drug therapy , Malaria, Falciparum/enzymology , Malaria, Falciparum/genetics , Mitochondria/genetics , Mitochondria/metabolism , Pentose Phosphate Pathway/physiology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/genetics , Plasmodium falciparum/genetics , Protozoan Proteins/antagonists & inhibitors , Protozoan Proteins/genetics , Radiography
8.
Mikrobiol Z ; 75(2): 10-20, 2013.
Article in Russian | MEDLINE | ID: mdl-23720959

ABSTRACT

The effect of univalent cations on activity of key enzymes of C2-metabolism has been investigated in the producer of biosurfactants, Acinetibacter calcoaceticus IMV B-7241 grown on ethanol. It was established that potassium cations are inhibitors of pyroquinolinequinone-dependent alcohol- and acetaldehyde dehydrogenases, the enzymes of biosynthesis of surface-active aminolipids (NADP-dependent glutamate dehydrogenase) and glycolipids (phosphoenopyruvate (PhEP)-carboxikinase), while ammonium cations are activators of these enzymes and PhEP-carboxylase. A decrease of potassium cations concentration in the cultivation medium to 1 mM and increase of the content of amine nitrogen to 10 mM as a result of potassium nitrate substitution by equimolar, as to nitrogen, urea concentration were accompanied by the increase of activity of enzymes of ethanol metabolism and SAS biosynthesis, as well as by the 2-fold increase of conditional concentration of the biosurfactants.


Subject(s)
Acinetobacter calcoaceticus/drug effects , Acinetobacter calcoaceticus/enzymology , Ammonia/pharmacology , Potassium/pharmacology , Surface-Active Agents/metabolism , Acinetobacter calcoaceticus/growth & development , Alcohol Oxidoreductases/antagonists & inhibitors , Alcohol Oxidoreductases/metabolism , Ammonia/metabolism , Cations, Monovalent , Culture Media , Enzyme Activation/drug effects , Ethanol/metabolism , Glutamate Dehydrogenase (NADP+)/antagonists & inhibitors , Glutamate Dehydrogenase (NADP+)/metabolism , Phosphoenolpyruvate Carboxykinase (ATP)/antagonists & inhibitors , Phosphoenolpyruvate Carboxykinase (ATP)/metabolism , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/metabolism , Potassium/metabolism , Substrate Specificity , Urea/metabolism
9.
Nat Commun ; 4: 1518, 2013.
Article in English | MEDLINE | ID: mdl-23443546

ABSTRACT

The C4-photosynthetic carbon cycle is an elaborated addition to the classical C3-photosynthetic pathway, which improves solar conversion efficiency. The key enzyme in this pathway, phosphoenolpyruvate carboxylase, has evolved from an ancestral non-photosynthetic C3 phosphoenolpyruvate carboxylase. During evolution, C4 phosphoenolpyruvate carboxylase has increased its kinetic efficiency and reduced its sensitivity towards the feedback inhibitors malate and aspartate. An open question is the molecular basis of the shift in inhibitor tolerance. Here we show that a single-point mutation is sufficient to account for the drastic differences between the inhibitor tolerances of C3 and C4 phosphoenolpyruvate carboxylases. We solved high-resolution X-ray crystal structures of a C3 phosphoenolpyruvate carboxylase and a closely related C4 phosphoenolpyruvate carboxylase. The comparison of both structures revealed that Arg884 supports tight inhibitor binding in the C3-type enzyme. In the C4 phosphoenolpyruvate carboxylase isoform, this arginine is replaced by glycine. The substitution reduces inhibitor affinity and enables the enzyme to participate in the C4 photosynthesis pathway.


Subject(s)
Amino Acid Substitution/genetics , Flaveria/enzymology , Phosphoenolpyruvate Carboxylase/genetics , Phosphoenolpyruvate Carboxylase/metabolism , Photosynthesis , Amino Acid Sequence , Binding Sites , Crystallography, X-Ray , Enzyme Inhibitors/pharmacology , Feedback, Physiological/drug effects , Flaveria/drug effects , Inhibitory Concentration 50 , Kinetics , Models, Molecular , Molecular Sequence Data , Mutagenesis/drug effects , Mutagenesis/genetics , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/chemistry , Photosynthesis/drug effects , Static Electricity , Substrate Specificity/drug effects , Zea mays/enzymology
10.
PLoS One ; 7(5): e37103, 2012.
Article in English | MEDLINE | ID: mdl-22615911

ABSTRACT

Dioxins and dioxin-like compounds encompass a group of structurally related heterocyclic compounds that bind to and activate the aryl hydrocarbon receptor (AhR). The prototypical dioxin is 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), a highly toxic industrial byproduct that incites numerous adverse physiological effects. Global commercial production of the structurally similar polychlorinated biphenyls (PCBs), however, commenced early in the 20(th) century and continued for decades; dioxin-like PCBs therefore contribute significantly to total dioxin-associated toxicity. In this study, PCB 126, the most potent dioxin-like PCB, was evaluated with respect to its direct effects on hepatic glucose metabolism using primary mouse hepatocytes. Overnight treatment with PCB 126 reduced hepatic glycogen stores in a dose-dependent manner. Additionally, PCB 126 suppressed forskolin-stimulated gluconeogenesis from lactate. These effects were independent of acute toxicity, as PCB 126 did not increase lactate dehydrogenase release nor affect lipid metabolism or total intracellular ATP. Interestingly, provision of cells with glycerol instead of lactate as the carbon source completely restored hepatic glucose production, indicating specific impairment in the distal arm of gluconeogenesis. In concordance with this finding, PCB 126 blunted the forskolin-stimulated increase in phosphoenolpyruvate carboxykinase (PEPCK) mRNA levels without affecting glucose-6-phosphatase expression. Myricetin, a putative competitive AhR antagonist, reversed the suppression of PEPCK induction by PCB 126. Furthermore, other dioxin-like PCBs demonstrated similar effects on PEPCK expression in parallel with their ability to activate AhR. It therefore appears that AhR activation mediates the suppression of PEPCK expression by dioxin-like PCBs, suggesting a role for these pollutants as disruptors of energy metabolism.


Subject(s)
Dioxins/toxicity , Liver/drug effects , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/biosynthesis , Polychlorinated Biphenyls/toxicity , Adenosine Triphosphate/metabolism , Animals , Flavonoids/toxicity , Gene Expression/drug effects , Gluconeogenesis/drug effects , Glucose/metabolism , Glucose-6-Phosphatase/metabolism , Glycogen/metabolism , Hepatocytes/drug effects , Hepatocytes/metabolism , L-Lactate Dehydrogenase/metabolism , Lactic Acid/metabolism , Liver/metabolism , Male , Mice , Mice, Inbred C57BL , Phosphoenolpyruvate Carboxylase/genetics , Receptors, Aryl Hydrocarbon/metabolism
11.
Biochem J ; 433(1): 65-74, 2011 Jan 01.
Article in English | MEDLINE | ID: mdl-20950272

ABSTRACT

PEPC [PEP (phosphoenolpyruvate) carboxylase] is a tightly controlled anaplerotic enzyme situated at a pivotal branch point of plant carbohydrate metabolism. Two distinct oligomeric PEPC classes were discovered in developing COS (castor oil seeds). Class-1 PEPC is a typical homotetramer of 107 kDa PTPC (plant-type PEPC) subunits, whereas the novel 910-kDa Class-2 PEPC hetero-octamer arises from a tight interaction between Class-1 PEPC and 118 kDa BTPC (bacterial-type PEPC) subunits. Mass spectrometric analysis of immunopurified COS BTPC indicated that it is subject to in vivo proline-directed phosphorylation at Ser425. We show that immunoblots probed with phosphorylation site-specific antibodies demonstrated that Ser425 phosphorylation is promoted during COS development, becoming maximal at stage IX (maturation phase) or in response to depodding. Kinetic analyses of a recombinant, chimaeric Class-2 PEPC containing phosphomimetic BTPC mutant subunits (S425D) indicated that Ser425 phosphorylation results in significant BTPC inhibition by: (i) increasing its Km(PEP) 3-fold, (ii) reducing its I50 (L-malate and L-aspartate) values by 4.5- and 2.5-fold respectively, while (iii) decreasing its activity within the physiological pH range. The developmental pattern and kinetic influence of Ser425 BTPC phosphorylation is very distinct from the in vivo phosphorylation/activation of COS Class-1 PEPC's PTPC subunits at Ser11. Collectively, the results establish that BTPC's phospho-Ser425 content depends upon COS developmental and physiological status and that Ser425 phosphorylation attenuates the catalytic activity of BTPC subunits within a Class-2 PEPC complex. To the best of our knowledge, this study provides the first evidence for protein phosphorylation as a mechanism for the in vivo control of vascular plant BTPC activity.


Subject(s)
Phosphoenolpyruvate Carboxylase/metabolism , Ricinus communis/enzymology , Seeds/enzymology , Kinetics , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphorylation , Plant Proteins , Protein Processing, Post-Translational , Seeds/growth & development , Serine/metabolism
12.
Biochimie ; 92(10): 1362-70, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20600561

ABSTRACT

Phosphoenolpyruvate carboxylase (PEPC, EC 4.1.1.31) from mature maize seeds (Zea mays L.) was purified to homogeneity and a final specific activity of 13.3 µmol min⁻¹ mg⁻¹. Purified PEPC was treated with phosphatase from bovine intestinal mucosa or protein kinase A to study its apparent phosphorylation level. Kinetic parameters of the enzyme reaction catalyzed by phosphorylated and dephosphorylated forms under different conditions were compared, as well as an effect of modulators. The enzyme dephosphorylation resulted in the change of hyperbolic kinetics to the sigmoidal one (with respect to PEP), following with the decrease of maximal reaction rate and the increase of sensitivity to L-malate inhibition. The hyperbolic kinetics of native PEPC present in dry maize seeds was not changed after the protein kinase A treatment, while it was converted to the sigmoidal one after dephosphorylation. Level of PEPC phosphorylation was not affected during seed imbibition.


Subject(s)
Phosphoenolpyruvate Carboxylase/metabolism , Seeds/enzymology , Zea mays/enzymology , Animals , Cattle , Cyclic AMP-Dependent Protein Kinases/pharmacology , Kinetics , Malates/pharmacology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/isolation & purification , Phosphorylation
13.
J Exp Bot ; 61(1): 287-95, 2010.
Article in English | MEDLINE | ID: mdl-19815688

ABSTRACT

Cotton fibres are hair-like single-cells that elongate to several centimetres long after their initiation from the ovule epidermis at anthesis. The accumulation of malate, along with K+ and sugars, is thought to play an important role in fibre elongation through osmotic regulation and charge balance. However, there is a lack of evidence for or against such an hypothesis. Phosphoenolpyruvate carboxylase (PEPC) is a key enzyme responsible for the synthesis of malate. The potential role of PEPC in cotton fibre elongation is examined here. Developmentally, PEPC activity was higher at the rapid elongation phase than that at the slow elongation stage. Genotypically, PEPC activity correlated positively with the rate of fibre elongation and the final fibre length attained. Importantly, suppression of PEPC activity by LiCl that reduces its phosphorylation status decreased fibre length. To examine the molecular basis underlying PEPC activity, two cDNAs encoding PEPC, GhPEPC1 and 2, were cloned, which represents the major PEPC genes expressed in cotton fibre. RT-PCR analyses revealed that GhPEPC1 and 2 were highly expressed at the rapid elongation phase but weakly at the slow-to-terminal elongation period. In situ hybridization detected mRNA of GhPEPC1 and 2 in 1 d young fibres but not in the ovule epidermis prior to fibre initiation. Collectively, the data indicate that cotton fibre elongation requires high activity of PEPC, probably through the expression of the GhPEPC1 and 2 genes.


Subject(s)
Cotton Fiber , Gossypium/enzymology , Gossypium/growth & development , Phosphoenolpyruvate Carboxylase/metabolism , Cell Differentiation/drug effects , Cloning, Molecular , DNA, Complementary/genetics , Flowers/cytology , Flowers/drug effects , Flowers/metabolism , Gene Expression Profiling , Gene Expression Regulation, Plant/drug effects , Genotype , Gossypium/drug effects , Gossypium/genetics , Lithium Chloride/pharmacology , Malates/metabolism , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Plant Epidermis/cytology , Plant Epidermis/drug effects , Plant Epidermis/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Seeds/anatomy & histology , Seeds/drug effects
14.
J Exp Bot ; 59(7): 1811-8, 2008.
Article in English | MEDLINE | ID: mdl-18408221

ABSTRACT

Introducing a C(4)-like pathway into C(3) plants is one of the proposed strategies for the enhancement of photosynthetic productivity. For this purpose it is necessary to provide each component enzyme that exerts strong activity in the targeted C(3) plants. Here, a maize C(4)-form phosphoenolpyruvate carboxylase (PEPC, EC 4.1.1.31) was engineered for its regulatory and catalytic properties so as to be functional in the cells of C(3) plants. Firstly, amino acid residues Lys-835 and Arg-894 of maize PEPC, which correspond to Lys-773 and Arg-832 of Escherichia coli PEPC, respectively, were replaced by Gly, since they had been shown to be involved in the binding of allosteric inhibitors, malate or aspartate, by our X-ray crystallographic analysis of E. coli PEPC. The resulting mutant enzymes were active but their sensitivities to the inhibitors were greatly diminished. Secondly, a Ser residue (S780) characteristically conserved in all C(4)-form PEPC was replaced by Ala conserved in C(3)- and root-form PEPCs to decrease the half-maximal concentration (S(0.5)) of PEP. The double mutant enzyme (S780A/K835G) showed diminished sensitivity to malate and decreased S(0.5)(PEP) with equal maximal catalytic activity (V(m)) to the wild-type PEPC, which will be quite useful as a component of the C(4)-like pathway to be introduced into C(3) plants.


Subject(s)
Genetic Engineering/methods , Phosphoenolpyruvate Carboxylase/genetics , Phosphoenolpyruvate Carboxylase/metabolism , Photosynthesis/genetics , Zea mays/enzymology , Amino Acid Sequence , Amino Acid Substitution , Enzyme Inhibitors , Escherichia coli/metabolism , Genetic Complementation Test , Kinetics , Mutation , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Photosynthesis/physiology , Substrate Specificity
15.
Plant Physiol ; 144(1): 479-86, 2007 May.
Article in English | MEDLINE | ID: mdl-17337522

ABSTRACT

The aim of this study was to investigate the relationship between the phosphorylation and activation states of phosphoenolpyruvate carboxykinase (PEPCK) and to investigate how the phosphorylation states of PEPCK and phosphoenolpyruvate carboxylase (PEPC) are coordinated in response to light intensity and CO(2) concentration during photosynthesis in leaves of the C(4) plant Guinea grass (Panicum maximum). There was a linear, reciprocal relationship between the phosphorylation state of PEPCK and its activation state, determined in a selective assay that distinguishes phosphorylated from nonphosphorylated forms of the enzyme. At high photon flux density and high CO(2) (750 microL L(-1)), PEPC was maximally phosphorylated and PEPCK maximally dephosphorylated within 1 h of illumination. The phosphorylation state of both enzymes did not saturate until high light intensities (about 1,400 micromol quanta m(-2) s(-1)) were reached. After illumination at lower light intensities and CO(2) concentrations, the overall change in phosphorylation state was smaller and it took longer for the change in phosphorylation state to occur. Phosphorylation states of PEPC and PEPCK showed a strikingly similar, but inverse, pattern in relation to changes in light and CO(2). The protein phosphatase inhibitor, okadaic acid, promoted the phosphorylation of both enzymes. The protein synthesis inhibitor, cycloheximide, blocked dark phosphorylation of PEPCK. The data show that PEPC and PEPCK phosphorylation states are closely coordinated in vivo, despite being located in the mesophyll and bundle sheath cells, respectively.


Subject(s)
Carbon Dioxide/physiology , Light , Panicum/enzymology , Phosphoenolpyruvate Carboxykinase (ATP)/metabolism , Phosphoenolpyruvate Carboxylase/metabolism , Photosynthesis/physiology , Amino Acid Sequence , Carbon Dioxide/metabolism , Cycloheximide/pharmacology , Dithiothreitol/pharmacology , Molecular Sequence Data , Okadaic Acid/pharmacology , Panicum/metabolism , Phosphoenolpyruvate Carboxykinase (ATP)/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphorylation , Sequence Alignment
16.
J Agric Food Chem ; 54(7): 2621-8, 2006 Apr 05.
Article in English | MEDLINE | ID: mdl-16569053

ABSTRACT

The short-term effects of the herbicide glyphosate (1.25-10 mM) on the growth, nitrogen fixation, carbohydrate metabolism, and shikimate pathway were investigated in leaves and nodules of nodulated lupine plants. All glyphosate treatments decreased nitrogenase activity rapidly (24 h) after application, even at the lowest and sublethal dose used (1.25 mM). This early effect on nitrogenase could not be related to either damage to nitrogenase components (I and II) or limitation of carbohydrates supplied by the host plant. In fact, further exposure to increasing glyphosate concentrations (5 mM) and greater time after exposure (5 days) decreased nodule starch content and sucrose synthase (SS; EC 2.4.1.13) activity but increased sucrose content within the nodule. These effects were accompanied by a great inhibition of the activity of phosphoenolpyruvate carboxylase (PEPC; EC 4.1.1.31). There were remarkable and rapid effects on the increase of shikimic and protocatechuic (PCA) acids in nodules and leaves after herbicide application. On the basis of the role of shikimic acid and PCA in the regulation of PEPC, as potent competitive inhibitors, this additional effect provoked by glyphosate on 5-enolpyruvylshikimic-3-phosphate synthase enzyme (EPSPS; EC 2.5.1.19) inhibition would divert most PEP into the shikimate pathway, depriving energy substrates to bacteroids to maintain nitrogen fixation. These findings provide a new explanation for the effectiveness of glyphosate as a herbicide in other plant tissues, for the observed differences in tolerance among species or cultivars, and for the transitory effects on glyphosate-resistant transgenic crops under several environmental conditions.


Subject(s)
Glycine/analogs & derivatives , Herbicides/pharmacology , Lupinus/drug effects , Rhizome/drug effects , Shikimic Acid/metabolism , Carbohydrate Metabolism , Drug Resistance , Enzyme Inhibitors/metabolism , Glycine/pharmacology , Hydroxybenzoates/metabolism , Lupinus/growth & development , Lupinus/metabolism , Nitrogenase/metabolism , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/metabolism , Plant Leaves/drug effects , Plant Leaves/metabolism , Rhizome/chemistry , Rhizome/metabolism , Glyphosate
17.
J Biomol Screen ; 10(1): 67-75, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15695345

ABSTRACT

Plants using the C(4) photosynthetic pathway are highly represented among the world's worst weeds, with only 4 C(4) species being agriculturally productive (maize, sorghum, millet, and sugar cane). With the C(4) acid cycle operating as a biochemical appendage of C(3) photosynthesis, the additional enzymes involved in C(4) photosynthesis represent an attractive target for the development of weed-specific herbicides. The rate-limiting enzyme of this metabolic pathway is pyruvate orthophosphate dikinase (PPDK). PPDK, coupled with phosphoenolpyruvate carboxylase and nicotinamide adenine dinucleotide-malate dehydrogenase, was used to develop a microplate-based assay to detect inhibitors of enzymes of the C(4) acid cycle. The resulting assay had a Z' factor of 0.61, making it a high-quality assay able to reliably identify active test samples. Organic extracts of 6679 marine macroscopic organisms were tested within the assay, and 343 were identified that inhibited the 3 enzyme-coupled reaction. A high confirmation rate was achieved, with 95% of these hit extracts proving active again upon retesting. Sequential addition of phosphoenolpyruvate and oxaloacetate to the assay facilitated identification of 83 extracts that specifically inhibited PPDK.


Subject(s)
Drug Evaluation, Preclinical/methods , Enzyme Inhibitors/pharmacology , Herbicides/pharmacology , Plants/drug effects , Plants/enzymology , Pyruvate, Orthophosphate Dikinase/antagonists & inhibitors , Dimethyl Sulfoxide/pharmacology , Enzyme Inhibitors/chemistry , Herbicides/chemistry , Malate Dehydrogenase/antagonists & inhibitors , Malate Dehydrogenase/metabolism , Molecular Structure , Oxalic Acid/pharmacology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/metabolism , Plant Extracts/metabolism , Pyruvate, Orthophosphate Dikinase/metabolism , Species Specificity , Time Factors
18.
Plant Physiol ; 132(2): 1097-106, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12805637

ABSTRACT

Higher plant phosphoenolpyruvate carboxylase (PEPC) is subject to in vivo phosphorylation of a regulatory serine located in the N-terminal domain of the protein. Studies using synthetic peptide substrates and mutated phosphorylation domain photosynthetic PEPC (C4 PEPC) suggested that the interaction of phosphoenolpyruvate carboxylase kinase (PEPCk) with its target was not restricted to this domain. However, no further information was available as to where PEPCk-C4 PEPC interactions take place. In this work, we have studied the possible interaction of the conserved 19-amino acid C-terminal sequence of sorghum (Sorghum vulgare Pers cv Tamaran) C4 PEPC with PEPCk. In reconstituted assays, a C-terminal synthetic peptide containing this sequence (peptide C19) was found to inhibit the phosphorylation reaction by the partially purified Ca2+-independent PEPCk (50% inhibition of initial activity = 230 microm). This effect was highly specific because peptide C19 did not alter C4 PEPC phosphorylation by either a partially purified sorghum leaf Ca2+-dependent protein kinase or the catalytic subunit of mammalian protein kinase A. In addition, the Ca2+-independent PEPCk was partially but significantly retained in affinity chromatography using a peptide C19 agarose column. Because peptide C15 (peptide C19 lacking the last four amino acids, QNTG) also inhibited C4 PEPC phosphorylation, it was concluded that the amino acid sequence downstream from the QNTG motif was responsible for the inhibitory effect. Specific antibodies raised against peptide C19 revealed that native C4 PEPC could be in two different conformational states. The results are discussed in relation with the reported crystal structure of the bacterial (Escherichia coli) and plant (maize [Zea mays]) enzymes.


Subject(s)
Peptide Fragments/chemistry , Phosphoenolpyruvate Carboxylase/metabolism , Poaceae/enzymology , Protein Serine-Threonine Kinases/metabolism , Amino Acid Sequence , Calcium/pharmacology , Conserved Sequence , Kinetics , Malates/pharmacology , Molecular Sequence Data , Peptide Fragments/chemical synthesis , Peptide Fragments/pharmacology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/chemistry , Phosphorylation , Plant Leaves/enzymology , Poaceae/growth & development , Protein Denaturation
19.
J Exp Bot ; 54(383): 707-14, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12554714

ABSTRACT

Temperature caused phenomenal modulation of phosphoenolpyruvate carboxylase (PEPC, EC 4.1.1.31) in leaf discs of Amaranthus hypochondriacus (NAD-ME type C(4) species), compared to the pattern in Pisum sativum (a C(3) plant). The optimal incubation temperature for PEPC in A. hypochondriacus (C(4)) was 45 degrees C compared to 30 degrees C in P. sativum (C(3)). A. hypochondriacus (C(4)) lost nearly 70% of PEPC activity on exposure to a low temperature of 15 degrees C, compared to only about a 35% loss in the case of P. sativum (C(3)). Thus, the C(4) enzyme was less sensitive to supra-optimal temperature and more sensitive to sub-optimal temperature than that of the C(3) species. As the temperature was raised from 15 degrees C to 50 degrees C, there was a sharp decrease in malate sensitivity of PEPC. The extent of such a decrease in C(4) plants (45%) was more than that in C(3) species (30%). The maintenance of high enzyme activity at warm temperatures, together with a sharp decrease in the malate sensitivity of PEPC was also noticed in other C(4) plants. The temperature-induced changes in PEPC of both A. hypochondriacus (C(4)) and P. sativum (C(3)) were reversible to a large extent. There was no difference in the extent of phosphorylation of PEPC in leaves of A. hypochondriacus on exposure to varying temperatures, unlike the marked increase in the phosphorylation of enzyme on illumination of the leaves. These results demonstrate that (i) there are marked differences in the temperature sensitivity of PEPC in C(3) and C(4) plants, (ii) the temperature induced changes are reversible, and (iii) these changes are not related to the phosphorylation state of the enzyme. The inclusion of PEG-6000, during the assay, dampened the modulation by temperature of malate sensitivity of PEPC in A. hypochondriacus. It is suggested that the variation in temperature may cause significant conformational changes in C(4)-PEPC.


Subject(s)
Phosphoenolpyruvate Carboxylase/metabolism , Photosynthetic Reaction Center Complex Proteins/metabolism , Plant Leaves/enzymology , Plants/enzymology , Amaranthus/enzymology , Malates/pharmacology , Pisum sativum/enzymology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphorylation/drug effects , Photosynthetic Reaction Center Complex Proteins/classification , Polyethylene Glycols/pharmacology , Temperature
20.
Plant Physiol ; 130(2): 964-76, 2002 Oct.
Article in English | MEDLINE | ID: mdl-12376660

ABSTRACT

A mutant of the NAD-malic enzyme-type C(4) plant, Amaranthus edulis, which lacks phosphoenolpyruvate carboxylase (PEPC) in the mesophyll cells was studied. Analysis of CO(2) response curves of photosynthesis of the mutant, which has normal Kranz anatomy but lacks a functional C(4) cycle, provided a direct means of determining the liquid phase-diffusive resistance of atmospheric CO(2) to sites of ribulose 1,5-bisphosphate carboxylation inside bundle sheath (BS) chloroplasts (r(bs)) within intact plants. Comparisons were made with excised shoots of wild-type plants fed 3,3-dichloro-2-(dihydroxyphosphinoyl-methyl)-propenoate, an inhibitor of PEPC. Values of r(bs) in A. edulis were 70 to 180 m(2) s(-1) mol(-1), increasing as the leaf matured. This is about 70-fold higher than the liquid phase resistance for diffusion of CO(2) to Rubisco in mesophyll cells of C(3) plants. The values of r(bs) in A. edulis are sufficient for C(4) photosynthesis to elevate CO(2) in BS cells and to minimize photorespiration. The calculated CO(2) concentration in BS cells, which is dependent on input of r(bs), was about 2,000 microbar under maximum rates of CO(2) fixation, which is about six times the ambient level of CO(2). High re-assimilation of photorespired CO(2) was demonstrated in both mutant and wild-type plants at limiting CO(2) concentrations, which can be explained by high r(bs). Increasing O(2) from near zero up to ambient levels under low CO(2), resulted in an increase in the gross rate of O(2) evolution measured by chlorophyll fluorescence analysis in the PEPC mutant; this increase was simulated from a Rubisco kinetic model, which indicates effective refixation of photorespired CO(2) in BS cells.


Subject(s)
Amaranthus/metabolism , Carbon Dioxide/pharmacology , Photosynthesis/drug effects , Plant Leaves/metabolism , Acrylates/pharmacology , Amaranthus/cytology , Amaranthus/genetics , Biological Transport , Carbon Dioxide/metabolism , Cell Respiration/physiology , Chloroplasts/metabolism , Diffusion , Electron Transport/drug effects , Electron Transport/physiology , Electron Transport/radiation effects , Light , Light-Harvesting Protein Complexes , Malate Dehydrogenase/metabolism , Microscopy, Electron , Mutation , Oxygen/metabolism , Oxygen/pharmacology , Phosphinic Acids/pharmacology , Phosphoenolpyruvate Carboxylase/antagonists & inhibitors , Phosphoenolpyruvate Carboxylase/metabolism , Photosynthesis/physiology , Photosynthetic Reaction Center Complex Proteins/classification , Photosynthetic Reaction Center Complex Proteins/drug effects , Photosynthetic Reaction Center Complex Proteins/metabolism , Plant Leaves/cytology , Plant Leaves/ultrastructure , Ribulose-Bisphosphate Carboxylase/metabolism , Temperature
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