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1.
Arch Biochem Biophys ; 669: 39-49, 2019 07 15.
Article in English | MEDLINE | ID: mdl-31128085

ABSTRACT

To enhance our understanding of the control of archaeal carbon central metabolism, a detailed analysis of the regulation mechanisms of both fructose1,6-bisphosphatase (FruBPase) and ADP-phosphofructokinase-1 (ADP-PFK1) was carried out in the methanogen Methanosarcina acetivorans. No correlations were found among the transcript levels of the MA_1152 and MA_3563 (frubpase type II and pfk1) genes, the FruBPase and ADP-PFK1 activities, and their protein contents. The kinetics of the recombinant FruBPase II and ADP-PFK1 were hyperbolic and showed simple mixed-type inhibition by AMP and ATP, respectively. Under physiological metabolite concentrations, the FruBPase II and ADP-PFK1 activities were strongly modulated by their inhibitors. To assess whether these enzymes were also regulated by a phosphorylation/dephosphorylation process, the recombinant enzymes and cytosolic-enriched fractions were incubated in the presence of commercial protein phosphatase or protein kinase. De-phosphorylation of ADP-PFK1 slightly decreased its activity (i.e. Vmax) and did not change its kinetic parameters and oligomeric state. Thus, the data indicated a predominant metabolic regulation of both FruBPase and ADP-PFK1 activities by adenine nucleotides and suggested high degrees of control on the respective pathway fluxes.


Subject(s)
Archaeal Proteins/metabolism , Fructose-Bisphosphatase/metabolism , Methanosarcina/metabolism , Phosphofructokinase-1/metabolism , Adenosine Diphosphate/metabolism , Adenosine Monophosphate/metabolism , Adenosine Triphosphate/metabolism , Animals , Archaeal Proteins/genetics , Archaeal Proteins/isolation & purification , Chickens , Fructose-Bisphosphatase/genetics , Fructose-Bisphosphatase/isolation & purification , Fructosephosphates/metabolism , Genes, Archaeal , Kinetics , Methanosarcina/genetics , Phosphofructokinase-1/genetics , Phosphofructokinase-1/isolation & purification , Phosphorylation , Protein Kinase Inhibitors/metabolism , Protein Processing, Post-Translational
2.
Methods Mol Biol ; 1090: 249-59, 2014.
Article in English | MEDLINE | ID: mdl-24222420

ABSTRACT

The evaluation of enzyme activities, especially their capacities, represents an important step towards the modelling of biochemical pathways in living organisms. The implementation of microplate technology enables the determination of up to >50 enzymes in relatively large numbers of samples and in various biological materials. Most of these enzymes are involved in central metabolism and several pathways are entirely covered. Direct or indirect assays can be used, as well as highly sensitive assays, depending on the abundance of the enzymes under study. To exemplify such methods, protocols for UDP-glucose pyrophosphorylase (E.C. 2.7.7.9) operating in real time and for pyrophosphate:fructose-6-phosphate 1-phosphotransferase (E.C. 2.7.1.90) are presented.


Subject(s)
Enzyme Assays/standards , Diphosphates/chemistry , Kinetics , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/isolation & purification , Plant Proteins/chemistry , Plant Proteins/isolation & purification , Plants/enzymology , Reference Standards , Solutions , UTP-Glucose-1-Phosphate Uridylyltransferase/chemistry , UTP-Glucose-1-Phosphate Uridylyltransferase/isolation & purification
3.
Res Microbiol ; 161(10): 861-8, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20868748

ABSTRACT

Pyrophosphate-dependent 6-phosphofructokinase (PPi-PFK) was obtained as His6-tagged protein by cloning of the pfp gene from the aerobic obligate methanotroph Methylomicrobium alcaliphilum 20Z and characterized. The recombinant PPi-PFK (4×45 kDa) was highly active, non-allosteric and stringently specific to pyrophosphate as the phosphoryl donor. The enzyme was more specific for the reverse reaction substrate fructose-1,6-bisphosphate (K(m) 0.095 mM, V(max) 805 U/mg of protein) than for the forward reaction substrate fructose-6-phosphate (K(m) 0.64 mM, V(max) 577 U/mg of protein). It also phosphorylated sedoheptulose-7-phosphate with much lower efficiency (K(m) 1.01 mM, V(max) 0.118 U/mg of protein). The kinetic properties of the M. alcaliphilum PP(i)-PFK were analyzed and compared with those of PP(i)-PFKs from other methanotrophs. The PP(i)-PFK from M. alcaliphilum shows highest sequence identity to PPi-PFK from obligate mesophilic methanotroph Methylomonas methanica (89%), and only low identity to the enzyme from thermotolerant Methylococcus capsulatus Bath (16%). This extensive sequence divergence of PPi-PFKs correlated with differential ability to phosphorylate sedoheptulose-7-phosphate and with the metabolic patterns of these bacteria assimilating C1 substrate either via the ribulose monophoshate (RuMP) cycle or simultaneously via the RuMP and the Calvin cycles. Based on enzymic and genomic data, the involvement of PPi-PFK in pyrophosphate-dependent glycolysis in M. alcaliphilum 20Z was fist proposed.


Subject(s)
Diphosphates/metabolism , Enzyme Activators/metabolism , Methylococcaceae/enzymology , Phosphofructokinase-1/metabolism , Cluster Analysis , Fructosediphosphates/metabolism , Fructosephosphates/metabolism , Kinetics , Methylococcaceae/genetics , Methylococcaceae/metabolism , Molecular Weight , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/genetics , Phosphofructokinase-1/isolation & purification , Phylogeny , Protein Multimerization , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , Substrate Specificity , Sugar Phosphates/metabolism
4.
Reproduction ; 133(1): 29-40, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17244730

ABSTRACT

Glycolysis is crucial for sperm functions (motility and fertilization), but how this pathway is regulated in spermatozoa is not clear. This prompted to study the location and the regulatory properties of 6-phosphofructokinase (PFK, EC 2.7.1.11), the most important element for control of glycolytic flux. Unlike some other glycolytic enzymes, PFK showed no tight binding to sperm structures. It could readily be extracted from ejaculated boar spermatozoa by sonication and was then chromatographically purified. At physiological pH, the enzyme was allosterically inhibited by near-physiological concentrations of its co-substrate ATP, which induced co-operativity, i.e. reduced the affinity for the substrate fructose 6-phosphate. Inhibition by ATP was reinforced by citrate and H+. Above pH 8, PFK lost all its regulatory properties and showed maximum activity. However, in the physiological pH range, PFK activity was very sensitive to small changes in effectors. At near-physiological substrate concentrations, PFK activity requires activators (de-inhibitors) of which the combination of AMP and fructose 2,6-bisphosphate (F2,6P2) was most efficient as a result of synergistic effects. The kinetics of PFK suggest AMP, F2,6P2, H+, and citrate as allosteric effectors controlling PFK activity in boar spermatozoa. Using immunogold labeling, PFK was localized in the mid-piece and principal piece of the flagellum as well as in the acrosomal area at the top of the head and in the cytoplasmic droplets released from the mid-piece after ejaculation.


Subject(s)
Adenosine Triphosphate/metabolism , Allosteric Regulation , Phosphofructokinase-1/metabolism , Spermatozoa/enzymology , Acrosome/enzymology , Adenosine Monophosphate/metabolism , Animals , Citrates/metabolism , Electrophoresis, Polyacrylamide Gel , Flagella/enzymology , Fructosediphosphates/metabolism , Glycolysis , Hydrogen-Ion Concentration , Immunoblotting , Immunohistochemistry , Male , Phosphofructokinase-1/analysis , Phosphofructokinase-1/isolation & purification , Swine
5.
Biochim Biophys Acta ; 1770(4): 706-15, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17229526

ABSTRACT

The kinetic properties of 6-phosphofructo-1-kinase (PFK) from skeletal muscle (PFKM) of gilthead sea bream (Sparus aurata) were studied, after 10,900-fold purification to homogeneity. The native enzyme had an apparent molecular mass of 662 kDa and is composed of 81 kDa subunits, suggesting a homooctameric structure. At physiological pH, S. aurata PFKM exhibited sigmoidal kinetics for the substrates, fructose-6-phosphate (fru-6-P) and ATP. Fructose-2,6-bisphosphate (fru-2,6-P(2)) converted the saturation curves for fru-6-P to hyperbolic, activated PFKM synergistically with other positive effectors of the enzyme such as AMP and ADP, and counteracted ATP and citrate inhibition. The fish enzyme showed differences regarding other animal PFKs: it is active as a homooctamer, and fru-2,6-P(2) and pH affected affinity for ATP. By monitoring incorporation of (32)P from ATP, we show that fish PFKM is a substrate for the cAMP-dependent protein kinase. The mechanism involved in PFKM activation by phosphorylation contrasts with previous observations in other species: it increased V(max) and did not affect affinity for fru-6-P. Unlike the mammalian muscle enzyme, our findings support that phosphorylation of PFKM may exert a major role during starvation in fish muscle.


Subject(s)
Fish Proteins/isolation & purification , Fish Proteins/metabolism , Muscle, Skeletal/enzymology , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-1/metabolism , Sea Bream/metabolism , Adenosine Triphosphate/metabolism , Allosteric Regulation , Animals , Cyclic AMP-Dependent Protein Kinases/metabolism , Fish Proteins/chemistry , Fructosediphosphates/metabolism , Fructosephosphates/metabolism , Glucose/metabolism , Hydrogen-Ion Concentration , Kinetics , Molecular Weight , Phosphofructokinase-1/chemistry , Phosphorylation , Protein Conformation , Protein Subunits , Substrate Specificity
6.
Appl Environ Microbiol ; 72(7): 4515-21, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16820438

ABSTRACT

Two forms of Aspergillus niger 6-phosphofructo-1-kinase (PFK1) have been described recently, the 85-kDa native enzyme and 49-kDa shorter fragment that is formed from the former by posttranslational modification. So far, kinetic characteristics have never been determined on the enzyme purified to near homogeneity. For the first time, kinetic parameters were determined for individual enzymes with respect to citrate inhibition. The native 85-kDa enzyme was found to be moderately inhibited by citrate, with the Ki value determined to be 1.5 mM, in the system with 5 mM Mg2+ ions, while increasing magnesium concentrations relieved the negative effect of citrate. An identical inhibition coefficient was determined also in the presence of ammonium ions, although ammonium acted as a strong activator of enzyme activity. On the other hand, the shorter fragment of PFK1 proved to be completely resistant to inhibition by citrate. Allosteric citrate binding sites were most probably lost after the truncation of the C-terminal part of the native protein, in which region some binding sites for inhibitor are known to be located. At near physiological conditions, characterized by low fructose-6-phosphate concentrations, a much higher efficiency of the shorter fragment was observed during an in vitro experiment. Since the enzyme became more susceptible to the positive control by specific ligands, while the negative control was lost after posttranslational modification, the shorter PFK1 fragment seems to be the enzyme most responsible for generating undisturbed metabolic flow through glycolysis in A. niger cells.


Subject(s)
Aspergillus niger/enzymology , Citric Acid/pharmacology , Phosphofructokinase-1/antagonists & inhibitors , Amino Acid Sequence , Animals , Aspergillus niger/drug effects , Enzyme Activation , Kinetics , Magnesium/pharmacology , Molecular Sequence Data , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-1/metabolism , Quaternary Ammonium Compounds/pharmacology , Rabbits , Sequence Alignment
7.
Appl Environ Microbiol ; 71(3): 1425-32, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15746345

ABSTRACT

Two different enzymes exhibiting 6-phosphofructo-1-kinase (PFK1) activity were isolated from the mycelium of Aspergillus niger: the native enzyme with a molecular mass of 85 kDa, which corresponded to the calculated molecular mass of the deduced amino acid sequence of the A. niger pfkA gene, and a shorter protein of approximately 49 kDa. A fragment of identical size also was obtained in vitro by the proteolytic digestion of the partially purified native PFK1 with proteinase K. When PFK1 activity was measured during the proteolytic degradation of the native protein, it was found to be lost after 1 h of incubation, but it was reestablished after induction of phosphorylation by adding the catalytic subunit of cyclic AMP-dependent protein kinase to the system. By determining kinetic parameters, different ratios of activities measured at ATP concentrations of 0.1 and 1 mM were detected with fragmented PFK1, as with the native enzyme. Fructose-2,6-biphosphate significantly increased the Vmax of the fragmented protein, while it had virtually no effect on the native protein. The native enzyme could be purified only from the early stages of growth on a minimal medium, while the 49-kDa fragment appeared later and was activated at the time of a sudden change in the growth rate. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of sequential purifications of PFK1 enzymes by affinity chromatography during the early stages of the fungal development suggested spontaneous posttranslational modification of the native PFK1 in A. niger cells, while from the kinetic parameters determined for both isolated forms it could be concluded that the fragmented enzyme might be more efficient under physiological conditions.


Subject(s)
Aspergillus niger/enzymology , Phosphofructokinase-1/metabolism , Aspergillus niger/genetics , Aspergillus niger/growth & development , Chromatography, Affinity , Cyclic AMP-Dependent Protein Kinases , Endopeptidase K , Enzyme Activation , Genes, Fungal , Kinetics , Molecular Weight , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/isolation & purification , Peptide Fragments/metabolism , Peptide Hydrolases , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/genetics , Phosphofructokinase-1/isolation & purification , Phosphorylation , Protein Processing, Post-Translational
8.
J Struct Biol ; 143(2): 124-34, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12972349

ABSTRACT

Phosphofructokinase plays a key role in the regulation of the glycolytic pathway and is responsible for the phosphorylation of fructose 6-phosphate to fructose 1,6-bisphosphate. Although the structure of the bacterial enzyme is well understood, the knowledge is still quite limited for higher organisms given the larger size and complexity of the eukaryotic enzymes. We have studied phosphofructokinase from Saccharomyces cerevisiae in the presence of fructose 6-phosphate by cryoelectron microscopy and image analysis of single particles and obtained the structure at 10.8A resolution. This was achieved by optimizing the illumination conditions to obtain routinely 8-A data from hydrated samples in an electron microscope equipped with an LaB(6) and by improving the image alignment techniques. The analysis of the structure has evidenced that the homology of the subunits at the sequence level has transcended to the structural level. By fitting the X-ray structure of the bacterial tetramer into each dimer of the yeast octamer the putative binding sites for fructose 6-phosphate were revealed. The data presented here in combination with molecular replacement techniques have served to provide the initial phases to solve the X-ray structure of the yeast phosphofructokinase.


Subject(s)
Phosphofructokinase-1/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Binding Sites , Cryoelectron Microscopy , Equipment Design , Fructosephosphates/metabolism , Imaging, Three-Dimensional , Phosphofructokinase-1/isolation & purification , Protein Conformation , Protein Subunits/chemistry , Saccharomyces cerevisiae Proteins/isolation & purification , Structural Homology, Protein
9.
Planta ; 217(1): 113-21, 2003 May.
Article in English | MEDLINE | ID: mdl-12721855

ABSTRACT

Pyrophosphate-dependent phosphofructokinase (PFP; EC 2.7.1.90) and two isoforms of ATP-dependent phosphofructokinase (PFK I and PFK II; EC 2.7.1.11) from ripened banana ( Musa cavendishii L. cv. Cavendish) fruits were resolved via hydrophobic interaction fast protein liquid chromatography (FPLC), and further purified using anion-exchange and gel filtration FPLC. PFP was purified 1,158-fold to a final specific activity of 13.9 micromol fructose 1,6-bisphosphate produced (mg protein)(-1) x min(-1). Gel filtration FPLC and immunoblot analyses indicated that this PFP exists as a 490-kDa heterooctomer composed of equal amounts of 66- (alpha) and 60-kDa (beta) subunits. PFP displayed hyperbolic saturation kinetics for fructose 6-phosphate (Fru 6-P), PPi, fructose 1,6-bisphosphate, and Pi ( K(m) values = 32, 9.7, 25, and 410 microM, respectively) in the presence of saturating (5 microM) fructose 2,6-bisphosphate, which elicited a 24-fold enhancement of glycolytic PFP activity ( K(a)=8 nM). PFK I and PFK II were each purified about 350-fold to final specific activities of 5.5-6.0 micromol fructose 1,6-bisphosphate produced (mg protein)(-1) x min(-1). Analytical gel filtration yielded respective native molecular masses of 210 and 160 kDa for PFK I and PFK II. Several properties of PFK I and PFK II were consistent with their respective designation as plastid and cytosolic PFK isozymes. PFK I and PFK II exhibited: (i) pH optima of 8.0 and 7.3, respectively; (ii) hyperbolic saturation kinetics for ATP ( K(m)=34 and 21 microM, respectively); and (iii) sigmoidal saturation kinetics for Fru 6-P ( S0.5=540 and 90 microM, respectively). Allosteric effects of phospho enolpyruvate (PEP) and Pi on the activities of PFP, PFK I, and PFK II were characterized. Increasing concentrations of PEP or Pi progressively disrupted fructose 2,6-bisphosphate binding by PFP. PEP potently inhibited PFK I and to a lesser extent PFK II ( I50=2.3 and 900 microM, respectively), while Pi activated PFK I by reducing its sensitivity to PEP inhibition. Our results are consistent with: (i) the respiratory climacteric being regulated by fine (allosteric) control of pre-existing enzymes; and (ii) primary and secondary glycolytic flux control being exerted at the levels of PEP and Fru 6-P metabolism, respectively.


Subject(s)
Fruit/enzymology , Musa/enzymology , Phosphofructokinase-1/metabolism , Phosphofructokinase-2/metabolism , Phosphotransferases/metabolism , Adenosine Triphosphate/metabolism , Chromatography, Gel , Fructosediphosphates/biosynthesis , Fruit/growth & development , Isoenzymes/isolation & purification , Isoenzymes/metabolism , Kinetics , Musa/growth & development , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-2/isolation & purification , Phosphotransferases/isolation & purification
10.
Biochemistry ; 41(45): 13410-6, 2002 Nov 12.
Article in English | MEDLINE | ID: mdl-12416986

ABSTRACT

Escherichia coli phosphofructokinase 1 (EcPFK) is a homotetramer with four active and four allosteric sites. Understanding of the structural basis of allosteric activation of EcPFK by MgADP is complicated by the multiplicity of binding sites. To isolate a single heterotropic allosteric interaction, hybrid tetramers were formed between wild-type and mutant EcPFK subunits in which the binding sites of the mutant subunits have decreased affinity for their respective ligands. The 1:3 (wild-type:mutant) hybrid that contained only one native active site and one native allosteric site was isolated. The affinity for the substrate fructose-6-phosphate (Fru-6-P) of a single wild-type active site is greatly decreased over that displayed by the wild-type tetramer due to the lack of homotropic activation. The free energy of activation by MgADP for this heterotropic interaction is -0.58 kcal/mol at 8.5 degrees C. This compares to -2.87 kcal/mol for a hybrid with no homotropic coupling but all four unique heterotropic interactions. Therefore, the isolated interaction contributes 20% of the total heterotropic coupling. By comparison, wild-type EcPFK exhibits a coupling free energy between Fru-6-P and MgADP of -1.56 kcal/mol under these conditions, indicating that the effects of MgADP are diminished by a homotropic activation equal to -1.3 kcal/mol. These data are not consistent with a concerted allosteric mechanism.


Subject(s)
Escherichia coli Proteins/chemistry , Escherichia coli Proteins/isolation & purification , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/isolation & purification , Adenosine Diphosphate/chemistry , Allosteric Site/genetics , Enzyme Activation/genetics , Escherichia coli Proteins/genetics , Fructosephosphates/chemistry , Kinetics , Models, Chemical , Mutagenesis, Site-Directed , Phosphofructokinase-1/genetics , Protein Binding/genetics , Protein Subunits , Recombinant Fusion Proteins/chemical synthesis , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Substrate Specificity/genetics
11.
Yeast ; 19(11): 933-47, 2002 Aug.
Article in English | MEDLINE | ID: mdl-12125050

ABSTRACT

6-Phosphofructokinase from Pichia pastoris was purified for the first time to homogeneity applying seven steps, including pseudo-affinity dye-ligand chromatography on Procion Blue H-5R-Sepharose. The specific activity of the purified enzyme was about 80 U/mg. It behaves as a typically allosteric 6-phosphofructokinase exhibiting activation by AMP and fructose 2,6-bis(phosphate), inhibition by ATP and cooperativity to fructose 6-phosphate. However, in comparison with the enzymes from Saccharomyces cerevisiae and Kluyveromyces lactis, the activation ratio of 6-phosphofructokinase from Pichia pastoris by AMP is several times higher, the ATP inhibition is stronger and the apparent affinity to fructose 6-phosphate is significantly lower. Aqueous two-phase affinity partitioning with Cibacron Blue F3G-A did not reflect remarkable structural differences of the nucleotide binding sites of the Pfks from Pichia pastoris and Saccharomyces cerevisiae. The structural organisation of the active enzyme seems to be different in comparison with hetero-octameric 6-phosphofructokinases from other yeast species. The enzyme was found to be a hetero-oligomer with an molecular mass of 975 kDa (sedimentation equilibrium measurements) consisting of two distinct types of subunits in an equimolar ratio with molecular masses of 113 kDa and 98 kDa (SDS-PAGE), respectively, and a third non-covalently complexed protein component (34 kDa, SDS-PAGE). The latter seems to be necessary for the catalytic activity of the enzyme. Sequencing of the N-terminus (VTKDSIXRDLEXENXGXXFF) and of peptide fragments by applying MALDI-TOF PSD, m/z 1517.3 (DAMNVVNH) and m/z 2177.2 [AQNCNVC(L/I)SVHEAHTM] gave no relevant information about the identity of this protein.


Subject(s)
Phosphofructokinase-1 , Pichia/enzymology , Amino Acid Sequence , Culture Media , Enzyme Activation , Glucose/metabolism , Kinetics , Molecular Sequence Data , Molecular Weight , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/genetics , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-1/metabolism , Pichia/genetics , Pichia/growth & development
12.
Arch Microbiol ; 177(5): 401-9, 2002 May.
Article in English | MEDLINE | ID: mdl-11976749

ABSTRACT

The ATP-dependent 6-phosphofructokinase (ATP-PFK) of the hyperthermophilic bacterium Thermotoga maritimawas purified 730-fold to homogeneity. The enzyme is a 140-kDa homotetramer composed of 34 kDa subunits. Kinetic constants were determined for all substrates in both reaction directions at pH 7 and at 75 degrees C. Rate dependence (forward reaction) on fructose 6-phosphate (F-6-P) showed sigmoidal kinetics with a half-maximal saturation constant ( S(0.5)) of 0.7 mM and a Hill coefficient of 2.2. The apparent K(m) for ATP was 0.2 mM and the apparent V(max) value was about 360 U/mg. The enzyme also catalyzed in vitro the reverse reaction with an apparent K(m) for fructose 1,6-bisphosphate and ADP of 7.6 mM and 1.4 mM, respectively, and an apparent V(max) of about 13 U/mg. Divalent cations were required for maximal activity; Mg(2+), which was most effective, could partially be replaced by Mn(2+) and Fe(2+). Enzyme activity was allosterically regulated by classical effectors of ATP-PFKs of Eukarya and Bacteria; it was activated by ADP and inhibited by PEP. The enzyme had a temperature optimum of 93 degrees C and showed a significant thermostability up to 100 degrees C. Using the N-terminal amino acid sequence of the subunit, the pfk gene coding for ATP-PFK was identified and functionally overexpressed in Escherichia coli. The purified recombinant ATP-PFK had identical kinetic and allosteric properties as the native enzyme purified from T. maritima. The deduced amino acid sequence showed high sequence similarity to members of the PFK-A family. In accordance with its allosteric properties, ATP-PFK of T. maritima contained the conserved allosteric effector-binding sites for ADP and PEP.


Subject(s)
Adenosine Triphosphate/metabolism , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-1/metabolism , Thermotoga maritima/enzymology , Allosteric Regulation , Amino Acid Sequence , Catalysis , Cloning, Molecular , Enzyme Stability , Escherichia coli/genetics , Gene Expression , Glucose/metabolism , Kinetics , Molecular Sequence Data , Molecular Weight , Phosphofructokinase-1/chemistry , Sequence Alignment , Substrate Specificity , Temperature , Thermotoga maritima/metabolism
13.
J Biochem Biophys Methods ; 50(2-3): 129-40, 2002 Jan 04.
Article in English | MEDLINE | ID: mdl-11741702

ABSTRACT

Phosphofructokinase-1 plays a key role in the regulation of carbohydrate metabolism. Its activity can be used as an indicator of the glycolytic flux in a tissue sample. The method most commonly employed to determine phosphofructokinase-1 activity is based on oxidation of NADH by the use of aldolase, triosephosphate isomerase, and alpha-glycerophosphate dehydrogenase. This method suffers from several disadvantages, including interactions of the auxiliary enzymes with phosphofructokinase-1. Other methods that have been used also require auxiliary enzymes or are less sensitive than a coupled assay. Here, we propose a direct method to determine phosphofructokinase-1 activity, without the use of auxiliary enzymes. This method employs fructose-6-phosphate and ATP labeled with 32P in the gamma position ([gamma-32P]ATP), and leads to the formation of ADP and fructose-1,6-bisphosphate labeled with 32P ([1-32P]fructose-1,6-bisphosphate). Activated charcoal is used to adsorb unreacted [gamma-32P]ATP, and the radioactive product in the supernatant, [1-32P]fructose-1,6-bisphosphate, is analyzed on a liquid scintillation counter. The proposed method is precise and relatively inexpensive, and can be applied to determine phosphofructokinase-1 activity in cellular extracts as well as in the purified enzyme.


Subject(s)
Phosphofructokinase-1/analysis , Adenosine Triphosphate , Animals , Chlorocebus aethiops , Erythrocytes/enzymology , Fructosephosphates , Humans , Kinetics , Muscle, Skeletal/enzymology , Phosphofructokinase-1/blood , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-1, Muscle Type/analysis , Phosphofructokinase-1, Muscle Type/isolation & purification , Phosphorus Radioisotopes , Rabbits , Radiometry/methods , Scintillation Counting , Spectrophotometry/methods , Substrate Specificity , Vero Cells
14.
Mol Cell Biochem ; 225(1-): 51-7, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11716364

ABSTRACT

This study reassesses the proposal that cellular conditions of low temperature and relative acidosis during hibernation contribute to a suppression of phosphofructokinase (PFK) activity which, in turn, contributes to glycolytic rate suppression during torpor. To test the proposal that a dilution effect during in vitro assay of PFK was the main reason for activity loss (tetramer dissociation) at lower pH values, the influence of the macromolecular crowding agent, polyethylene glycol 8000 (PEG), on purified skeletal muscle PFK from Spermophilus lateralis was evaluated at different pH values (6.5, 7.2 and 7.5) and assay temperatures (5, 25 and 37degrees C). A 78 +/- 2.5% loss of PFK activity during 1 h incubation at 5 degrees C and pH 6.5 was virtually eliminated when 10% PEG was present (only 7.0 +/- 1.5% activity lost). The presence of PEG also largely reversed PFK inactivation at pH 6.5 at warmer assay temperatures and reversed inhibitory effects by high urea (50 or 400 mM). Analysis of pH curves at 5 degrees C also indicated that approximately 70% of activity would remain at intracellular pH values in hibernator muscle. The data suggest that under high protein concentrations in intact cells that the conditions of relative acidosis, low temperature or elevated urea during hibernation would not have substantial regulatory effects on PFK.


Subject(s)
Cold Temperature , Phosphofructokinase-1/metabolism , Sciuridae/metabolism , Animals , Enzyme Activation , Enzyme Stability , Glycolysis , Hibernation , Hydrogen-Ion Concentration , In Vitro Techniques , Kinetics , Muscle, Skeletal/enzymology , Phosphofructokinase-1/drug effects , Phosphofructokinase-1/isolation & purification , Polyethylene Glycols/pharmacology , Sciuridae/physiology , Solvents/pharmacology
15.
J Bacteriol ; 183(24): 7231-40, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11717283

ABSTRACT

Cells of the actinomycete Amycolatopsis methanolica grown on glucose possess only a single, exclusively PP(i)-dependent phosphofructokinase (PP(i)-PFK) (A. M. C. R. Alves, G. J. W. Euverink, H. J. Hektor, J. van der Vlag, W. Vrijbloed, D.H.A. Hondmann, J. Visser, and L. Dijkhuizen, J. Bacteriol. 176:6827-6835, 1994). When this methylotrophic bacterium is grown on one-carbon (C(1)) compounds (e.g., methanol), an ATP-dependent phosphofructokinase (ATP-PFK) activity is specifically induced, completely replacing the PP(i)-PFK. The two A. methanolica PFK isoenzymes have very distinct functions, namely, in the metabolism of C(6) and C(1) carbon substrates. This is the first report providing biochemical evidence for the presence and physiological roles of PP(i)-PFK and ATP-PFK isoenzymes in a bacterium. The novel ATP-PFK enzyme was purified to homogeneity and characterized in detail at the biochemical and molecular levels. The A. methanolica ATP-PFK and PP(i)-PFK proteins possess a low level of amino acid sequence similarity (24%), clearly showing that the two proteins are not the result of a gene duplication event. PP(i)-PFK is closely related to other (putative) actinomycete PFK enzymes. Surprisingly, the A. methanolica ATP-PFK is most similar to ATP-PFK from the protozoon Trypanosoma brucei and PP(i)-PFK proteins from the bacteria Borrelia burgdorferi and Treponema pallidum, both spirochetes, very distinct from actinomycetes. The data thus suggest that A. methanolica obtained the ATP-PFK-encoding gene via a lateral gene transfer event.


Subject(s)
Actinomycetales/enzymology , Diphosphates/metabolism , Phosphofructokinase-1/metabolism , Phosphotransferases/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Carbon/metabolism , Cloning, Molecular , Culture Media , Glucose/metabolism , Isoenzymes/isolation & purification , Isoenzymes/metabolism , Methanol/metabolism , Models, Biological , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Phosphofructokinase-1/classification , Phosphofructokinase-1/isolation & purification , Phosphorus Isotopes , Phylogeny , Sequence Analysis, DNA , Sequence Analysis, Protein , Sequence Homology, Amino Acid
16.
Biochemistry ; 40(38): 11623-9, 2001 Sep 25.
Article in English | MEDLINE | ID: mdl-11560513

ABSTRACT

Phosphofructokinase from Bacillus stearothermophilus (BsPFK) is a model allosteric enzyme system in which the interactions between substrates and allosteric effectors have been extensively studied. However, the oligomeric nature of BsPFK has made it difficult to determine the molecular basis of the allosteric regulation because of the multitude of different types of heterotropic and homotropic interactions that are possible between the four active sites and four allosteric sites in the native tetramer. In an attempt to alleviate the complexity of the system and thereby allow the quantitation of a single interaction between one active site and one allosteric site, site-directed mutagenesis has been coupled with a hybrid-forming scheme to create and isolate a tetramer of BsPFK in which only a single active site and a single allosteric site are capable of binding their respective ligands with high (i.e., near wild type) affinity. Characterization of this single allosteric interaction indicates that the free energy involved in the inhibition by the allosteric effector phosphoenolpyruvate (PEP) is 1.48 +/- 0.15 kcal/mol compared to the 3.58 +/- 0.02 kcal/mol measured for the enzyme.


Subject(s)
Geobacillus stearothermophilus/enzymology , Phosphofructokinase-1/chemistry , Phosphofructokinase-1/metabolism , Allosteric Regulation , Allosteric Site , Amino Acid Substitution , Binding Sites , Fructosephosphates/metabolism , Kinetics , Macromolecular Substances , Mutagenesis, Site-Directed , Phosphoenolpyruvate/metabolism , Phosphofructokinase-1/isolation & purification , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Thermodynamics
17.
J Chromatogr B Biomed Sci Appl ; 751(2): 341-8, 2001 Feb 25.
Article in English | MEDLINE | ID: mdl-11236090

ABSTRACT

Phosphofructokinase (EC 2.7.1.11) and aldolase (EC 4.1.2.13) have been highly purified from Saccharomyces cerevisiae by improved protocols. Partitioning of the enzymes in aqueous polymer two-phase systems was used to detect complex formation. The partition of each enzyme was found to be affected by the presence of the other enzyme. AMP affected the partition of the individual enzymes as well as the mixture of the two. The activities of the respective enzymes were stimulated in the putative complex in an AMP-dependent manner. Two strictly conserved residues belonging to an acidic surface loop of class II aldolases, are a potential site for electrostatic interaction with the positively charged regions close to the active site in phosphofructokinase.


Subject(s)
Fructose-Bisphosphate Aldolase/metabolism , Phosphofructokinase-1/metabolism , Saccharomyces cerevisiae/enzymology , Adenosine Monophosphate/metabolism , Chromatography, Affinity , Fructose-Bisphosphate Aldolase/isolation & purification , Phosphofructokinase-1/isolation & purification , Water
18.
J Biol Chem ; 276(23): 19974-81, 2001 Jun 08.
Article in English | MEDLINE | ID: mdl-11262402

ABSTRACT

Two phosphofructokinase genes have been described previously in Entamoeba histolytica. The product of the larger of the two genes codes for a 60-kDa protein that has been described previously as a pyrophosphate (PP(i))-dependent enzyme, and the product of the second, coding for a 48-kDa protein, has been previously reported to be a PP(i)-dependent enzyme with extremely low specific activity. Here it is found that the 48-kDa protein is not a PP(i)-dependent enzyme but a highly active ATP-requiring enzyme (k(cat) = 250 s(-)1) that binds the cosubstrate fructose 6-phosphate (Fru-6-P) with relatively low affinity. This enzyme exists in concentration- and ATP-dependent tetrameric active and dimeric inactive states. Activation is achieved in the presence of nucleoside triphosphates, ADP, and PP(i), but not by AMP, P(i), or the second substrate Fru-6-P. Activation by ATP is facilitated by conditions of molecular crowding. Divalent cations are not required, and no phosphoryl transfer occurs during activation. Kinetics of the activated enzyme show cooperativity with Fru-6-P (Fru-6-P(0.5) = 3.8 mm) and inhibition by high ATP and phosphoenolpyruvate. The enzyme is active without prior activation in extracts of E. histolytica. The level of mRNA, the amount of enzyme protein, and the enzyme activity of the 48-kDa enzyme are about one-tenth that of the 60-kDa enzyme in extracts of E. histolytica trophozoites.


Subject(s)
Entamoeba histolytica/genetics , Phosphofructokinase-1/genetics , Adenosine Triphosphate/metabolism , Animals , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Entamoeba histolytica/enzymology , Enzyme Activation , Kinetics , Phosphofructokinase-1/isolation & purification , Phosphofructokinase-1/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
20.
Insect Biochem Mol Biol ; 31(4-5): 381-92, 2001 Mar 15.
Article in English | MEDLINE | ID: mdl-11222947

ABSTRACT

Hypertrehalosemic neuropeptides from the corpora cardiaca such as the decapeptide Bld HrTH bring about a profound switch in the metabolic activity of cockroach fat body during which production of the blood sugar trehalose is stimulated while the catabolism of carbohydrate (glycolysis) is inhibited. The mechanisms of the metabolic switch are not fully understood. Incubation of isolated fat body from the cockroach Blaptica dubia with 10(-8) M Bld HrTH, for 10-60 min, stimulated glycogen breakdown and increased the content of the substrates of both the glycolytic enzyme 6-phosphofructo-1-kinase (PFK, EC 2.7.1.11) and the gluconeogenic enzyme fructose-1,6-bisphosphatase (FBPase, EC 3.1.3.11) in the tissue. The glycolytic signal fructose 2,6-bisphosphate was markedly decreased in fat body on incubation with Bld HrTH. The content of ATP was slightly reduced, while the contents of ADP and AMP were increased after incubation with the hormone. Fructose 2,6-bisphosphate is a potent activator of PFK and a strong inhibitor of FBPase purified from fat body. The activity of PFK was decreased by about 90% when the hormone-dependent changes in effectors and substrates in fat body were simulated in vitro. FBPase, in contrast, was activated about 25-fold under these conditions, suggesting the hormone to stimulate gluconeogenesis in fat body. The data support the view that fructose 2,6-bisphosphate is a pivotal intracellular messenger in the hormone-induced metabolic switch from carbohydrate degradation to trehalose production in cockroach fat body.


Subject(s)
Cockroaches/metabolism , Fat Body/metabolism , Fructose-Bisphosphatase/antagonists & inhibitors , Neuropeptides/pharmacology , Phosphofructokinase-1/antagonists & inhibitors , Adenosine Monophosphate/pharmacology , Animals , Fructose-Bisphosphatase/isolation & purification , Fructosediphosphates/pharmacology , Gene Expression Regulation, Enzymologic , Glycogen/metabolism , In Vitro Techniques , Insect Hormones/pharmacology , Kinetics , Male , Phosphofructokinase-1/isolation & purification , Trehalose/metabolism
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