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1.
Braz. J. Pharm. Sci. (Online) ; 58: e20577, 2022. graf
Article in English | LILACS | ID: biblio-1403738

ABSTRACT

Abstract Lysiphyllum strychnifolium (Craib) A. Schmitz. (in Thai name, Ya nang daeng) has been traditionally used to treat fever, alcohol intoxication, cancer, allergies, and blood toxins. It can be used as a health-promoting herbal tea and contains hydroalcoholic extracts. The purpose of the present study was to develop a microwave-assisted extraction method for astilbin in L. strychnifolium stems. HPLC was used to determine astilbin content. Three extraction conditions were optimized: types of solvent, microwave power levels, and the number of extraction cycles. Water:methanol (40:60) was the best solvent for astilbin extraction from L. strychnifolium stems using 450 watts and six microwave-assisted extraction cycles. This technique offers important advantages over conventional methods, such as shorter extraction times, substantial energy savings, and a reduced environmental burden.


Subject(s)
Plant Stems/classification , Fabaceae/classification , Microwaves/adverse effects , Chromatography, High Pressure Liquid/methods
2.
Microsc Res Tech ; 83(1): 10-21, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31617645

ABSTRACT

The genus Ziziphora L. (Lamiaceae) is represented by five species (nine taxa) in the Turkish Flora. These taxa are Z. clinopodioides Lam. (subsp. elbursensis, subsp. filicaulis, subsp. kurdica, subsp. rigida), Z. capitata L., Z. persica Bunge, Z. tenuior L., Z. taurica Bieb. subsp. taurica, and Z. taurica Bieb. subsp. cleonioides (Boiss.) Davis which to be an endemic taxon for Turkey. They are strongly aromatic herbs which contain rich pulegone and used as herbal teas and spices and for this reason. In this study, comparative anatomy of the genus Ziziphora growing in Turkey is presented for the first time. In anatomical studies, cross sections of vegetative organs such as the root, stem, and leaf (lamina and petiole) were examined. In addition, to exhibit stomatal distribution and anatomy on adaxial and abaxial leaves were taken surface sections of the lamina and calculated stomatal index. Lamina and petiole anatomy were shown to be of great importance in the taxonomy of the Ziziphora taxa. The presence or absence of sclerenchyma in midrib of lamina and petiole, cortex parenchyma layer, mesophyll structure, and epidermal surface were found to be important characters for identification of Ziziphora taxa.


Subject(s)
Lamiaceae/anatomy & histology , Anatomy, Comparative , Lamiaceae/classification , Plant Leaves/anatomy & histology , Plant Leaves/classification , Plant Roots/anatomy & histology , Plant Roots/classification , Plant Stems/anatomy & histology , Plant Stems/classification , Turkey
3.
BMC Complement Altern Med ; 19(1): 262, 2019 Sep 23.
Article in English | MEDLINE | ID: mdl-31547810

ABSTRACT

BACKGROUND: Natural products play a significant role in human health in relation to the prevention and treatment of inflammatory conditions. One of the plants with great medicinal potentials is Diospyros kaki which is mainly cultivated in Asian countries including Korea, Japan, and China. Astringent D. kaki is a wild species with an astringent taste until they are Ripened. kaki calyx is a traditional Korean medicine (TKM) made from the stalks of astringent D. kaki and is used in treating bed-wetting, vomiting, and hiccupping. The present study was designed to investigate the potential anti-inflammatory activities of astringent D. kaki stalks based on cultivar types and stages of maturity. METHODS: The anti-inflammatory effects of the stalk extracts of local astringent D. kaki cultivar species were evaluated on RAW 264.7 cells. Cell viability was measured using a Cell Counting Kit-8 (CCK8) method. The anti-inflammatory effects were determined by measuring the nitric oxide (NO) concentration of the supernatant. Cellular signaling pathways were determined by quantitative polymerase chain reactions of inducible nitric oxide synthase (iNOS). Protein expression of iNOS and phospho-p65 was determined using western blot, and the nuclear localization of p65 was determined using confocal imaging in RAW 264.7 cells. RESULTS: We found that the stage 1 (8-9 month) samples all showed a high percentage of tannic acid content and Gojongsi (Hamyang) stalks had the highest content. The stage 1 samples also showed the highest inhibition of NO production. Decreases in the expression of iNOS and phosphorylated p65, and in the nuclear localization of p65, were dose-dependent. All the extracts were nontoxic under 100 µg/ml concentration. CONCLUSION: This study provides insight into the changes in tannic acid content in astringent D. kaki and their anti-inflammatory effects, in relation to their stage of maturity. These results are expected to be useful in the verification of the efficacy of oriental medicine and the timing of proper harvest for medical use.


Subject(s)
Anti-Inflammatory Agents/pharmacology , Diospyros/chemistry , Plant Extracts/pharmacology , Animals , Anti-Inflammatory Agents/chemistry , Diospyros/classification , Diospyros/growth & development , Humans , Macrophages/drug effects , Macrophages/immunology , Mice , Nitric Oxide/immunology , Nitric Oxide Synthase Type II/immunology , Plant Extracts/chemistry , Plant Stems/chemistry , Plant Stems/classification , Plant Stems/growth & development , RAW 264.7 Cells , Republic of Korea
4.
Plant Sci ; 274: 342-348, 2018 Sep.
Article in English | MEDLINE | ID: mdl-30080622

ABSTRACT

In the order Caryophyllales, plants synthesize betalains instead of anthocyanins, with only two exceptions, the Caryophyllaceae and Molluginaceae. Dionaea muscipula Ellis was included in the Caryophyllales order but recent research based on genetic studies proposed the consideration of the Droseraceae family into the Nepenthales order. In this work we face the dilemma of the phylogenetic classification of Dionaea from a phytochemical point of view. Dionaea's pigments were analyzed by using techniques of structural analysis. Extracts from the leaves, mature stem and flowers of different specimens of Dionaea were analyzed, to find possible differences in the types of pigments or in their proportion in different parts of the plant. These extracts were analyzed by spectrophotometry, HPLC co-elution and ESI-MS/MS. In addition, digestive glands were extracted from the snap trap with minor sample manipulation and by reducing the non-pigmented plant tissue. Considering only the digestive glands instead of whole snap traps, the analyses allowed to quantitate and elucidate the structure of the compounds responsible for the red coloration: delphinidin-3-O-glucoside (myrtillin), cyanidin-3-O-glucoside (kuromanin) and a third compound, the aglycone cyanidin, detected in the species for the first time. The unambiguous results of the present work support the exclusion of Dionaea from the Caryophyllales.


Subject(s)
Anthocyanins/analysis , Droseraceae/classification , Caryophyllales/chemistry , Caryophyllales/classification , Caryophyllales/genetics , Droseraceae/chemistry , Droseraceae/genetics , Flowers/chemistry , Flowers/classification , Flowers/genetics , Glucosides/analysis , Phylogeny , Pigmentation , Pigments, Biological , Plant Leaves/chemistry , Plant Leaves/classification , Plant Leaves/genetics , Plant Stems/chemistry , Plant Stems/classification , Plant Stems/genetics , Tandem Mass Spectrometry
5.
PLoS One ; 13(7): e0198287, 2018.
Article in English | MEDLINE | ID: mdl-29995908

ABSTRACT

Lycopsids are a minor component of current terrestrial herbaceous floras. However, lycopsid fossil diversity shows a great diversity and disparity including heterosporous woody plants, e.g. the giant isoetaleans that populated the extensive Pennsylvanian wetlands. The earliest known isoetaleans come from late Devonian localities from China. Here, we describe Lilingostrobus chaloneri gen. et sp. nov., a new isoetalean lycopsid from the Upper Devonian (Famennian) Xikuangshan Formation of China (Hunan Province, South China), which adds to the already impressive diversity of the Devonian lycopsids from China. Lilingostrobus shows an unusual combination of characters. This new plant is pseudoherbaceous, with a possible tufted habit, and consists of narrow axes with rare isotomies. The stem includes small quantities of secondary xylem. Each fertile axis bears one terminal strobilus comprising sporophylls ending in a very long upturned lamina. Microspores and putative megaspores have been found, but whether the plant has mono- or bisporangiate strobili is unknown. Importantly, our cladistic analysis identifies Lilingostrobus as a direct precursor of Isoetales, which provides new insights into the early evolution of lycopsids.


Subject(s)
Lycopodiaceae/anatomy & histology , Phylogeny , Plant Stems/anatomy & histology , Xylem/anatomy & histology , Biological Evolution , China , Extinction, Biological , Fossils/history , History, Ancient , Lycopodiaceae/classification , Lycopodiaceae/physiology , Plant Stems/classification , Plant Stems/physiology , Wetlands , Xylem/physiology , Xylem/ultrastructure
6.
J Sci Food Agric ; 96(13): 4575-83, 2016 Oct.
Article in English | MEDLINE | ID: mdl-26910811

ABSTRACT

BACKGROUND: Grapevine cluster morphology influences the quality and commercial value of wine and table grapes. It is routinely evaluated by subjective and inaccurate methods that do not meet the requirements set by the food industry. Novel two-dimensional (2D) and three-dimensional (3D) machine vision technologies emerge as promising tools for its automatic and fast evaluation. RESULTS: The automatic evaluation of cluster length, width and elongation was successfully achieved by the analysis of 2D images, significant and strong correlations with the manual methods being found (r = 0.959, 0.861 and 0.852, respectively). The classification of clusters according to their shape can be achieved by evaluating their conicity in different sections of the cluster. The geometric reconstruction of the morphological volume of the cluster from 2D features worked better than the direct 3D laser scanning system, showing a high correlation (r = 0.956) with the manual approach (water displacement method). In addition, we constructed and validated a simple linear regression model for cluster compactness estimation. It showed a high predictive capacity for both the training and validation subsets of clusters (R(2) = 84.5 and 71.1%, respectively). CONCLUSION: The methodologies proposed in this work provide continuous and accurate data for the fast and objective characterisation of cluster morphology. © 2016 Society of Chemical Industry.


Subject(s)
Crops, Agricultural/growth & development , Food Inspection/methods , Food Quality , Fruit/growth & development , Plant Stems/growth & development , Vitis/growth & development , Algorithms , Artificial Intelligence , Crops, Agricultural/classification , Flowering Tops/classification , Flowering Tops/growth & development , Fruit/classification , Humans , Image Interpretation, Computer-Assisted , Imaging, Three-Dimensional , Linear Models , Photography , Plant Stems/classification , Spain , Species Specificity , Vitis/classification
7.
Rev. bras. plantas med ; 18(1): 81-88, jan.-mar. 2016. tab, graf
Article in Spanish | LILACS | ID: lil-780041

ABSTRACT

RESUMO No Nordeste do Brasil é bastante comum e variado o uso da coroa-de-frade (Melocactus spp.). Assim, o objetivo deste estudo foi realizar diversas análises em cladódios de coroa-de-frade [Melocactus zehntneri (Britton & Rose) Luetzelburg], para que possamos compreender as razões estes usos. Os cladódios foram coletados na cidade de Campina Grande e levados ao Laboratório de Engenharia de Alimentos da Universidade Federal de Campina Grande, onde foram feitas as seguintes análises: peso, altura, diâmetro, cor, umidade, acidez, pH, ácido ascórbico, carotenoides, flavonoides e compostos fenólicos, tanto na epiderme quanto no parênquima aquífero. Os resultados mostraram que a epiderme tem uma acidez elevada e mais ácido ascórbico, e um pH mais baixo em comparação com o parênquima aquífero. O conteúdo de carotenoides, flavonoides e compostos fenólicos, foram diferentes nas partes estudadas. A epiderme apresentou sempre maiores quantidades de carotenoides, flavonoides e compostos fenólicos em relação ao parênquima aquífero, nas três plantas estudadas, indicando que a maior parte da defesa da planta acontece neste tecido. Mais estudos são necessários com técnicas mais precisas, para identificar os componentes bioativos desta espécie.


ABSTRACT In Northeast Brazil, the use of melon cactus (Melocactus spp.) is quite common and varied. Thus, the present study aimed to perform various analyzes in cladodes of melon cactus [Melocactus zehntneri (Britton & Rose) Luetzelburg], to understand the reasons for the use of this species. The cladodes were collected in the city of Campina Grande and taken to the Food Engineering Laboratory of the Federal University of Campina Grande, where we performed the following analyses: mass, height, diameter, color, moisture, acidity, pH, ascorbic acid, carotenoids, flavonoids and phenolic compounds, both in the epidermis and in the aquifer parenchyma. The results showed that the epidermis has a higher acidity, ascorbic acid content and lower pH compared to the aquifer parenchyma. The contents of carotenoids, flavonoids and phenolic compounds, were different from the both parts analyzed. The epidermis always had greater quantities of carotenoids, flavonoids and phenolic compounds than the aquifer parenchyma for the three plants, showing that most of the plant defense takes place in this tissue. Further studies, with more accurate techniques, are needed to identify the bioactive components of this species.


Subject(s)
Cactaceae/classification , Ascorbic Acid/analysis , Carotenoids/analysis , Plant Stems/classification , Phenolic Compounds/analysis
8.
Bioinspir Biomim ; 10(3): 036005, 2015 Apr 24.
Article in English | MEDLINE | ID: mdl-25909346

ABSTRACT

Four species of cacti were chosen for this study: Copiapoa cinerea var. haseltoniana, Ferocactus wislizenii, Mammillaria columbiana subsp. yucatanensis and Parodia mammulosa. It has been reported that dew condenses on the spines of C. cinerea and that it does not on the spines of F. wislizenii, and our preliminary observations of M. columbiana and P. mammulosa revealed a potential for collecting dew water. This study found all four cacti to harvest dew on their stems and spines (albeit rarely on the spines of F. wislizenii). Dew harvesting experiments were carried out in the UK, recording an increase in cacti mass on dewy nights. By applying a ranking relative to a polymethyl methacrylate (Plexiglas) reference plate located nearby, it was found that C. cinerea collected the most airborne moisture followed by M. columbiana, P. mammulosa and F. wislizenii respectively, with mean efficiency ratio with respect to the Plexiglas reference of 3.48 ± 0.5, 2.44 ± 0.06, 1.81 ± 0.14 and 1.27 ± 0.49 on observed dewy nights. A maximum yield of normalized performance of 0.72 ± 0.006 l/m(-2) on one dewy night was recorded for C. cinerea. Removing the spines from M. columbiana was found to significantly decrease its dew harvesting efficiency. The spines of three of the species were found to be hydrophilic in nature, while F. wislizenii was hydrophobic; the stems of all four species were hydrophilic. The results of this study could be translated into designing a biomimetic water collecting device that utilizes cactus spines and their microstructures.


Subject(s)
Biomimetic Materials/chemistry , Cactaceae/chemistry , Cactaceae/classification , Plant Stems/chemistry , Plant Stems/classification , Water/chemistry , Adsorption , Materials Testing , Species Specificity
9.
Sensors (Basel) ; 15(5): 9651-65, 2015 Apr 24.
Article in English | MEDLINE | ID: mdl-25919368

ABSTRACT

Accessing a plant's 3D geometry has become of significant importance for phenotyping during the last few years. Close-up laser scanning is an established method to acquire 3D plant shapes in real time with high detail, but it is stationary and has high investment costs. 3D reconstruction from images using structure from motion (SfM) and multi-view stereo (MVS) is a flexible cost-effective method, but requires post-processing procedures. The aim of this study is to evaluate the potential measuring accuracy of an SfM- and MVS-based photogrammetric method for the task of organ-level plant phenotyping. For this, reference data are provided by a high-accuracy close-up laser scanner. Using both methods, point clouds of several tomato plants were reconstructed at six following days. The parameters leaf area, main stem height and convex hull of the complete plant were extracted from the 3D point clouds and compared to the reference data regarding accuracy and correlation. These parameters were chosen regarding the demands of current phenotyping scenarios. The study shows that the photogrammetric approach is highly suitable for the presented monitoring scenario, yielding high correlations to the reference measurements. This cost-effective 3D reconstruction method depicts an alternative to an expensive laser scanner in the studied scenarios with potential for automated procedures.


Subject(s)
Imaging, Three-Dimensional/methods , Solanum lycopersicum/classification , Algorithms , Image Processing, Computer-Assisted , Solanum lycopersicum/anatomy & histology , Phenotype , Plant Leaves/anatomy & histology , Plant Leaves/classification , Plant Stems/anatomy & histology , Plant Stems/classification
10.
Sensors (Basel) ; 14(6): 10783-803, 2014 Jun 19.
Article in English | MEDLINE | ID: mdl-24949638

ABSTRACT

Active optical sensing (LIDAR and light curtain transmission) devices mounted on a mobile platform can correctly detect, localize, and classify trees. To conduct an evaluation and comparison of the different sensors, an optical encoder wheel was used for vehicle odometry and provided a measurement of the linear displacement of the prototype vehicle along a row of tree seedlings as a reference for each recorded sensor measurement. The field trials were conducted in a juvenile tree nursery with one-year-old grafted almond trees at Sierra Gold Nurseries, Yuba City, CA, United States. Through these tests and subsequent data processing, each sensor was individually evaluated to characterize their reliability, as well as their advantages and disadvantages for the proposed task. Test results indicated that 95.7% and 99.48% of the trees were successfully detected with the LIDAR and light curtain sensors, respectively. LIDAR correctly classified, between alive or dead tree states at a 93.75% success rate compared to 94.16% for the light curtain sensor. These results can help system designers select the most reliable sensor for the accurate detection and localization of each tree in a nursery, which might allow labor-intensive tasks, such as weeding, to be automated without damaging crops.


Subject(s)
Agriculture/instrumentation , Agriculture/methods , Lasers , Pattern Recognition, Automated/methods , Plant Stems/classification , Seedlings/classification , Trees/classification , Algorithms , Equipment Design , Equipment Failure Analysis , Plant Stems/anatomy & histology , Plant Stems/physiology , Seedlings/anatomy & histology , Seedlings/physiology , Transducers , Trees/anatomy & histology , Trees/physiology
11.
Am J Bot ; 101(3): 510-20, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24634435

ABSTRACT

PREMISE OF THE STUDY: Early land plant fossils can be challenging to interpret due to their morphological simplicity and often fragmentary nature. Morphometric techniques using commonly preserved characters might increase diagnostic value of such material. To evaluate the utility of morphometrics in assessing morphospecies boundaries in the Devonian, we compared degrees of variation within the cosmopolitan lycopsid genus Leclercqia with that of living relatives (Lycopodium-Spinulum spp.) Of particular interest was determining whether a new morphotype of Leclercqia from the Middle Devonian Chilliwack flora of Washington State fell within or outside the range of variation of previously described species. METHODS: Morphological variation of Leclercqia was assessed across the geographic range of the genus using six vegetative and three reproductive characters. The new morphotype and two previously described species (L. complexa, L. andrewsii) were compared using linear discriminant analysis (LDA). Extant Lycopodium-Spinulum species and variants were similarly analyzed to assess inter- vs. intraspecific variation in living lycopsids. KEY RESULTS: The LDA comparisons of Lycopodium-Spinulum yielded notable morphological disparity between species but substantial overlap between intraspecific variants. Among the fossils, LDA separates the new morphotype, Leclercqia complexa, and L. andrewsii to a similar degree as Lycopodium and Spinulum species. Based on these results and further study, we describe a new species of Leclercqia: Leclercqia scolopendra Benca et Strömberg sp. nov. CONCLUSIONS: Morphometric analyses can aid in informing taxonomic assignment of fragmentary early land plant fossils using readily preserved features, even in the absence of reproductive structures. Applications of this approach to the Chilliwack flora suggest Leclercqia displayed greater morphological variation, taxonomic diversity, and biogeographic extent than previously thought.


Subject(s)
Embryophyta/classification , Embryophyta/anatomy & histology , Embryophyta/genetics , Fossils , Phylogeny , Phylogeography , Plant Leaves/anatomy & histology , Plant Leaves/classification , Plant Leaves/genetics , Plant Stems/anatomy & histology , Plant Stems/classification , Plant Stems/genetics , Washington
12.
J Plant Res ; 127(2): 209-19, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24317753

ABSTRACT

A new species of structurally preserved fern rhizome, Ashicaulis plumites (Osmundaceae, Filicales), is described from the Middle Jurassic Tiaojishan Formation in western Liaoning Province, NE China. The new species is characterized by a peculiar sclerenchyma mass in the petiolar vascular bundle concavity. This sclerenchyma mass varies from a linear-shape to a mushroom-like shape with a remarkable outward protuberance, which distinguishes the present new species from other Ashicaulis species. Such a protuberance is very rare among osmundaceous ferns, and should represent a unique type for sclerenchymatous tissue in the osmundaceous vascular bundle concavity. Recognition of the peculiar structure of this new fossil species enriches anatomical diversity of permineralized osmundaceous ferns, indicating that the family Osmundaceae might have experienced a remarkable diversification during the Middle Jurassic in NE China. The new species show anatomical similarities to Osmunda pluma Miller from the Palaeocene of North America. The occurrence of A. plumites in the Middle Jurassic of China provides a new clue for understanding the evolution of some members of the living subgenus Osmunda.


Subject(s)
Ferns/classification , Fossils , Biological Evolution , China , Extinction, Biological , Ferns/anatomy & histology , Ferns/genetics , Geography , Plant Leaves/anatomy & histology , Plant Leaves/classification , Plant Leaves/genetics , Plant Roots/anatomy & histology , Plant Roots/classification , Plant Roots/genetics , Plant Stems/anatomy & histology , Plant Stems/classification , Plant Stems/genetics , Rhizome/anatomy & histology , Rhizome/classification , Rhizome/genetics , Time Factors , Xylem/anatomy & histology , Xylem/classification , Xylem/genetics
13.
BMC Bioinformatics ; 14: 238, 2013 Jul 27.
Article in English | MEDLINE | ID: mdl-23890277

ABSTRACT

BACKGROUND: Laserscanning recently has become a powerful and common method for plant parameterization and plant growth observation on nearly every scale range. However, 3D measurements with high accuracy, spatial resolution and speed result in a multitude of points that require processing and analysis. The primary objective of this research has been to establish a reliable and fast technique for high throughput phenotyping using differentiation, segmentation and classification of single plants by a fully automated system. In this report, we introduce a technique for automated classification of point clouds of plants and present the applicability for plant parameterization. RESULTS: A surface feature histogram based approach from the field of robotics was adapted to close-up laserscans of plants. Local geometric point features describe class characteristics, which were used to distinguish among different plant organs. This approach has been proven and tested on several plant species. Grapevine stems and leaves were classified with an accuracy of up to 98%. The proposed method was successfully transferred to 3D-laserscans of wheat plants for yield estimation. Wheat ears were separated with an accuracy of 96% from other plant organs. Subsequently, the ear volume was calculated and correlated to the ear weight, the kernel weights and the number of kernels. Furthermore the impact of the data resolution was evaluated considering point to point distances between 0.3 and 4.0 mm with respect to the classification accuracy. CONCLUSION: We introduced an approach using surface feature histograms for automated plant organ parameterization. Highly reliable classification results of about 96% for the separation of grapevine and wheat organs have been obtained. This approach was found to be independent of the point to point distance and applicable to multiple plant species. Its reliability, flexibility and its high order of automation make this method well suited for the demands of high throughput phenotyping. HIGHLIGHTS: • Automatic classification of plant organs using geometrical surface information• Transfer of analysis methods for low resolution point clouds to close-up laser measurements of plants• Analysis of 3D-data requirements for automated plant organ classification.


Subject(s)
Imaging, Three-Dimensional/methods , Lasers , Phenotype , Plant Structures/classification , Plant Leaves/classification , Plant Stems/classification , Plant Structures/anatomy & histology , Triticum/anatomy & histology
14.
New Phytol ; 197(4): 1204-1213, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23278439

ABSTRACT

Variation in angiosperm vessel diameter is of major functional significance. In the light of recent models predicting optimal vessel taper given resistance imposed by conductive path length, we tested the prediction that plant size should predict vessel diameter, with dryland plants having narrower vessels for their stem sizes. We assembled a comparative dataset including vessel and stem diameter measurements from 237 species from over 40 angiosperm orders across a wide range of habits and habitats. Stem diameter predicted vessel diameter across self-supporting plants (slope 0.36, 95% CI 0.32-0.39). Samples from 142 species from five communities of differing water availability showed no tendency for dryland plants to have narrower vessels. Predictable relationships between vessel diameter and stem diameter mirrored predictable relationships between stem length and diameter across self-supporting species. That vessels are proportional to stem diameter and stem diameter is proportional to stem length suggests that taper in relation to conductive path length gives rise to the vessel diameter-stem diameter relationship. In turn, plant size is related to climate, leading indirectly to the vessel-climate relationship: vessels are likely narrower in drier communities because dryland plants are on average smaller, not because they have narrow vessels for their stem sizes.


Subject(s)
Models, Biological , Plant Stems/anatomy & histology , Xylem/anatomy & histology , Phylogeny , Plant Stems/classification , Plant Stems/physiology , Species Specificity , Water/metabolism , Xylem/classification , Xylem/physiology
15.
Plant Cell Rep ; 31(11): 2085-97, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22847333

ABSTRACT

In this study, 39 specimens belonging to Lespedeza species (Lespedeza cyrtobotrya, L. bicolor, L. maximowiczii, and Lespedeza cuneata) (Leguminosae) were classified phenotypically and genotypically. We constructed a phylogenetic tree based on the combined nrDNA (internal transcribed spacer; ITS) and cpDNA (trnL-trnF) sequences with the aim of classifying the genotypes. Samples were mainly divided into three genotypes. Samples of L. cyrtobotrya and L. bicolor were mixed in a single branch, whereas samples of L. maximowiczii and L. cuneata were clustered within species, respectively. We performed a liquid chromatography-electrospray ionization-mass spectrometry-based metabolite profiling analysis to classify the phenotypes. Multivariate statistical analyses such as principal component analysis (PCA) and hierarchical clustering analysis (HCA) were used for the clustering pattern analysis and distance analysis between species, respectively. According to the PCA and HCA results, leaves were classified into four phenotypes according to species. In both the genetic and chemotaxonomic classification methods, the distance between L. cyrtobotrya and L. bicolor was the closest between species, and L. cuneata was the farthest away from the other three species. Additionally, orthogonal partial least squares-discriminant analysis was employed to identify significantly different phytochemicals between species. We classified L. cyrtobotrya and L. bicolor by identifying significantly different phytochemicals. Interestingly, leaves and stems showed different phenotypic classifications based on the chemotaxonomic classification. Stem samples of the other three species were mixed regardless of species, whereas L. cyrtobotrya stem samples were clustered within species. The phenotypic classification of leaves coincided more with the genotypic classification than that of stems. Key message We classified four wild-type Lespedeza sp. by analyzing the combined nrDNA (ITS) and cpDNA (trnL-trnF) sequences. We also classified leaves and stems of Lespedeza sp. by applying liquid chromatography-mass spectroscopy-based metabolite profiling.


Subject(s)
Lespedeza/classification , Metabolome , Plant Extracts/chemistry , Chromatography, High Pressure Liquid , Cluster Analysis , DNA, Chloroplast/chemistry , DNA, Chloroplast/genetics , DNA, Plant/chemistry , DNA, Plant/genetics , DNA, Ribosomal Spacer/chemistry , DNA, Ribosomal Spacer/genetics , Discriminant Analysis , Genotype , Least-Squares Analysis , Lespedeza/chemistry , Lespedeza/genetics , Lespedeza/metabolism , Metabolomics , Multivariate Analysis , Phenotype , Phylogeny , Plant Extracts/isolation & purification , Plant Leaves/chemistry , Plant Leaves/classification , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Stems/chemistry , Plant Stems/classification , Plant Stems/genetics , Plant Stems/metabolism , Principal Component Analysis , Sequence Analysis, DNA , Species Specificity , Spectrometry, Mass, Electrospray Ionization
16.
J Chromatogr A ; 1218(31): 5319-27, 2011 Aug 05.
Article in English | MEDLINE | ID: mdl-21722910

ABSTRACT

Pretreatment is one of the most important steps in producing fuel ethanol from lignocellulosic biomass. Simple, fast and accurate quantification of byproducts in lignocellulosic hydrolysates is critical to optimize the pretreatment procedures, but still a challenge. In this paper, a new GC-MS (SIM) method based on a Deans switch has been developed for the determination of byproducts in a corn stover hydrolysate. The Deans switch was incorporated into a hardware system that facilitated the direct aqueous injection (DAI) on GC-MS system. Simultaneous chromatographic separation and quantification of 18 byproducts including four aliphatic acids, five furan derivatives, four phenolic compounds and five others were achieved within 45 min. The detection limits of the presented method for various byproducts were in the range of 0.007-0.832 mg/L. The within-day and between-day precisions of the method were less than 6.0% (RSD, n=6). The accuracy of the method was confirmed with recoveries of 86-128%. A lignocellulosic hydrolysate sample of corn stover was successfully analyzed using this method, with aliphatic acids and furan derivatives accounting for 89.15% of the selected total byproducts.


Subject(s)
Gas Chromatography-Mass Spectrometry/methods , Lignin/chemistry , Zea mays/chemistry , Hydrolysis , Plant Stems/chemistry , Plant Stems/classification
17.
Planta ; 230(3): 459-68, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19495788

ABSTRACT

Hydraulic traits and hydraulic-related structural properties were examined in three deciduous (Hevea brasiliensis, Macaranga denticulate, and Bischofia javanica) and three evergreen (Drypetes indica, Aleurites moluccana, and Codiaeum variegatum) Euphorbiaceae tree species from a seasonally tropical forest in south-western China. Xylem water potential at 50% loss of stem hydraulic conductivity (P50(stem)) was more negative in the evergreen tree, but leaf water potential at 50% loss of leaf hydraulic conductivity (P50(leaf)) did not function as P50(stem) did. Furthermore, P50(stem) was more negative than P50(leaf) in the evergreen tree; contrarily, this pattern was not observed in the deciduous tree. Leaf hydraulic conductivity overlapped considerably, but stem hydraulic conductivity diverged between the evergreen and deciduous tree. Correspondingly, structural properties of leaves overlapped substantially; however, structural properties of stem diverged markedly. Consequently, leaf and stem hydraulic traits were closely correlated with leaf and stem structural properties, respectively. Additionally, stem hydraulic efficiency was significantly correlated with stem hydraulic resistance to embolism; nevertheless, such a hydraulic pattern was not found in leaf hydraulics. Thus, these results suggest: (1) that the evergreen and deciduous tree mainly diverge in stem hydraulics, but not in leaf hydraulics, (2) that regardless of leaf or stem, their hydraulic traits result primarily from structural properties, and not from leaf phenology, (3) that leaves are more vulnerable to drought-induced embolism than stem in the evergreen tree, but not always in the deciduous tree and (4) that there exists a trade-off between hydraulic efficiency and safety for stem hydraulics, but not for leaf hydraulics.


Subject(s)
Euphorbiaceae/classification , Plant Leaves/classification , Plant Stems/classification , Species Specificity , Water
18.
J Nat Med ; 62(3): 294-9, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18404307

ABSTRACT

According to the notification for definition of pharmaceuticals from the Director-General of the Pharmaceutical and Food Safety Bureau, Ministry of Health Labour and Welfare of Japan, the roots of Scutellaria baicalensis (Chinese skullcap) and S. lateriflora (skullcap) are classified as "the raw materials exclusively used as pharmaceuticals", but their aerial parts are classified as "non-pharmaceuticals" so, in principle, there are no health claims for these materials and no descriptions of drug-like dosages or administration directions. Dried root of S. baicalensis is also registered in Japanese Pharmacopoeia XV as scutellaria root. Scutellaria root is considered to have the adverse drug reactions of interstitial pneumonia and drug-induced hepatopathy in kampo medicines (Japanese traditional herbal formulations), and baicalin, its major constituent, is considered to be the cause of the adverse reaction. This study was conducted to evaluate the validity of this borderline between pharmaceuticals and non-pharmaceuticals by analyzing the amounts of four flavonoids, including baicalin, in the roots, stems, and leaves of S. baicalensis and S. lateriflora, and in the commercial products herbal tea and dietary supplements prepared from S. lateriflora. These flavonoids were found in the root of S. baicalensis; its aerial parts, however, did not contain them. On the other hand, the amounts of those flavonoids in the aerial parts of S. lateriflora were larger than in the root. Herbal tea and dietary supplements of S. lateriflora obtained commercially also contained those flavonoids, and the dietary supplements contained amounts of them comparable with that in kampo medicine. These results suggest that classification that the aerial parts of S. lateriflora as non-pharmaceuticals in Japan needs reconsideration.


Subject(s)
Flavonoids/isolation & purification , Plant Extracts/chemistry , Scutellaria baicalensis/chemistry , Scutellaria/chemistry , Dietary Supplements , Flavanones/isolation & purification , Glucuronides/isolation & purification , Japan , Plant Leaves/classification , Plant Roots/classification , Plant Stems/classification , Scutellaria/classification , Scutellaria baicalensis/classification , Tea/chemistry
19.
Appl Biochem Biotechnol ; 145(1-3): 3-11, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18425606

ABSTRACT

The cultivation of shrub willow (Salix spp.) bioenergy crops is being commercialized in North America, as it has been in Europe for many years. Considering the high genetic diversity and ease of hybridization, there is great potential for genetic improvement of shrub willow through traditional breeding. The State University of New York-College of Environmental Science and Forestry has an extensive breeding program for the genetic improvement of shrub willow for biomass production and for other environmental applications. Since 1998, breeding efforts have produced more than 200 families resulting in more than 5,000 progeny. The goal for this project was to utilize a rapid, low-cost method for the compositional analysis of willow biomass to aid in the selection of willow clones for improved conversion efficiency. A select group of willow clones was analyzed using high-resolution thermogravimetric analysis (HR-TGA), and significant differences in biomass composition were observed. Differences among and within families produced through controlled pollinations were observed, as well as differences by age at time of sampling. These results suggest that HR-TGA has a great promise as a tool for rapid biomass characterization.


Subject(s)
Cellulose/analysis , Lignin/analysis , Plant Stems/chemistry , Salix/chemistry , Thermogravimetry/methods , Biomass , Cellulose/chemistry , Lignin/chemistry , Plant Stems/classification , Reproducibility of Results , Sensitivity and Specificity , Species Specificity
20.
Plant Cell Environ ; 29(8): 1629-43, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16898023

ABSTRACT

We tested to what extent differences in construction costs (CC) and chemical composition of woody species are attributed to leaf habit. Eight evergreen and eight deciduous species belonging to six families were selected to form eight phylogenetic independent contrasts (PICs). The plants were grown from seed in a glasshouse. Differences in leaf, stem and root CC between evergreen and deciduous species were minor, the proportion of variance explained by leaf habit generally being less than 6%. Surprisingly, differences in leaf chemical composition between deciduous and evergreen species were small as well. Variation in CC and chemical composition among families was substantial, the factor 'family' explaining 50-85% of variance. We therefore conclude that in this case, phylogeny is a more important factor than functional group. Leaves of the fast-growing species in this experiment showed high levels of minerals, organic acids, proteins and lipids, whereas leaves of the slow-growing species had higher concentrations of soluble phenolics, lignin as well as higher carbon/nitrogen (C/N) ratio. These relationships suggest a trade-off between growth and defence. In contrast, CC of leaves, stems, roots or whole plants showed no or only a weak correlation with relative growth rate (RGR). The C/N ratio of the leaves is an easily measured parameter that correlated strongly in a negative way with the RGR of the plants and reflected better the balance between investment in structure and physiological functioning than CC.


Subject(s)
Plant Development , Plants/chemistry , Carbon/analysis , Lignin/analysis , Lipids/analysis , Minerals/analysis , Nitrogen/analysis , Phenols/analysis , Phylogeny , Plant Leaves/chemistry , Plant Leaves/classification , Plant Leaves/growth & development , Plant Roots/chemistry , Plant Roots/classification , Plant Roots/growth & development , Plant Stems/chemistry , Plant Stems/classification , Plant Stems/growth & development , Plants/classification
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