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1.
Am J Bot ; 102(4): 598-608, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25878092

ABSTRACT

PREMISE OF THE STUDY: The mycoheterotrophic lifestyle has enabled some plant lineages to obtain carbon from their mycorrhizal symbionts. The mycoheterotrophic genus Epirixanthes (Polygalaceae) consists of six species from tropical Asia. Although it is probably closely related to the chlorophyllous genus Salomonia and linked to arbuscular mycorrhizal fungi, lack of DNA sequence data has thus far prevented these hypotheses from being tested. Therefore, the evolutionary history of Epirixanthes remains largely unknown. METHODS: We reconstructed the phylogenetic relationships of Epirixanthes based on nuclear ITS and plastid matK data. Divergence times were inferred using a Bayesian relaxed clock approach, and we phylogenetically analyzed its mycorrhizal symbionts. We furthermore assigned these symbionts to operational taxonomic units, compared them with symbionts of other Polygalaceae, and measured their phylogenetic diversity. KEY RESULTS: We found that Epirixanthes is placed in tribe Polygaleae as sister to Salomonia. Epirixanthes has a Miocene-Oligocene stem age and grows exclusively in symbiosis with fungi of Glomeraceae. Salomonia and some Polygala species are linked to both Glomeraceae and Acaulosporaceae, resulting in higher phylogenetic diversity values. The majority of the symbionts of Epirixanthes are not found in Salomonia or Polygala, although a few shared fungal taxa are found. CONCLUSIONS: Epirixanthes forms a relatively young mycoheterotrophic lineage. The Oligocene-Miocene origin suggests its evolution was influenced by the environmental dynamics in Southeast Asia during this time. Although comparison of fungi from Epirixanthes with those from Salomonia and Polygala suggests some specialization, many other mycoheterotrophic plants are linked to a more narrow set of Glomeraceae.


Subject(s)
Biological Evolution , Glomeromycota/physiology , Mycorrhizae/physiology , Polygalaceae/microbiology , Polygalaceae/physiology , Borneo , DNA, Fungal/genetics , DNA, Intergenic/genetics , DNA, Plant/genetics , Evolution, Molecular , Glomeromycota/classification , Glomeromycota/genetics , Malaysia , Molecular Sequence Data , Mycorrhizae/classification , Mycorrhizae/genetics , Phylogeny , Plant Proteins/genetics , Polygalaceae/classification , Polygalaceae/genetics , RNA, Ribosomal, 18S/genetics , Sequence Analysis, DNA , Symbiosis
2.
J Plant Res ; 123(3): 355-62, 2010 May.
Article in English | MEDLINE | ID: mdl-19941028

ABSTRACT

Fine-scale genetic structure within a population was analyzed for the myrmecochorous forest perennial Polygala reinii (Polygalaceae) using allozyme loci. In the analysis, two sampling plots were established to cover the isolated patchy distribution within the study population. Size and spatial structure were also examined for the plots to assess their interaction with the genetic structuring. Allozyme analysis based on 13 putative loci encoding 10 enzyme systems showed high genetic variation and low values of fixation indices at the two plots. Spatial autocorrelation analysis based on the multilocus coancestry coefficient (f ( ij )) revealed significant genetic structuring in both plots, suggesting limited gene-, especially seed-, dispersal within the population. The spatial structure within the plots, assessed by O-ring statistics, was characterized by the occurrence of spatial clustering of individuals within a few meters. In particular, the range of the spatial clustering roughly corresponded to that of the genetic structuring. While the size structure did not significantly differ between the plots, these results indicate that the fine-scale genetic structure reflects the formation of spatial clustering of related individuals within the population, partly due to the restricted ant-mediated seed dispersal in P. reinii.


Subject(s)
Ants/physiology , Polygalaceae/genetics , Seeds/physiology , Animals , Genetic Variation , Monte Carlo Method , Phylogeny , Population Dynamics
3.
Evolution ; 61(7): 1675-94, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17598748

ABSTRACT

A phylogenetic approach was taken to investigate the evolutionary history of seed appendages in the plant family Polygalaceae (Fabales) and determine which factors might be associated with evolution of elaiosomes through comparisons to abiotic (climate) and biotic (ant species number and abundance) timelines. Molecular datasets from three plastid regions representing 160 species were used to reconstruct a phylogenetic tree of the order Fabales, focusing on Polygalaceae. Bayesian dating methods were used to estimate the age of the appearance of ant-dispersed elaiosomes in Polygalaceae, shown by likelihood optimizations to have a single origin in the family. Topology-based tests indicated a diversification rate shift associated with appearance of caruncular elaiosomes. We show that evolution of the caruncular elaiosome type currently associated with ant dispersal occurred 54.0-50.5 million year ago. This is long after an estimated increase in ant lineages in the Late Cretaceous based on molecular studies, but broadly concomitant with increasing global temperatures culminating in the Late Paleocene-Early Eocene thermal maxima. These results suggest that although most major ant clades were present when elaiosomes appeared, the environmental significance of elaiosomes may have been an important factor in success of elaiosome-bearing lineages. Ecological abundance of ants is perhaps more important than lineage numbers in determining significance of ant dispersal. Thus, our observation that elaiosomes predate increased ecological abundance of ants inferred from amber deposits could be indicative of an initial abiotic environmental function.


Subject(s)
Ants/physiology , Biological Evolution , Polygalaceae/genetics , Animals , Bayes Theorem , Fossils , Phylogeny , Polygalaceae/classification , Polymerase Chain Reaction , Sequence Analysis, DNA
4.
Mol Phylogenet Evol ; 43(1): 60-74, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17049279

ABSTRACT

Phylogenetic relationships in the largely South African genus Muraltia (Polygalaceae) are assessed based on DNA sequence data (nuclear ribosomal ITS, plastid atpB-rbcL spacer, trnL intron, and trnL-F spacer) for 73 of the 117 currently recognized species in the genus. The previously recognised subgenus Muraltia is monophyletic, but the South African endemic genus Nylandtia is embedded in Muraltia subgenus Psiloclada. Subgenus Muraltia is found to be sister to subgenus Psiloclada. Estimates show the beginning of diversification of the two subgenera in the early Miocene (Psiloclada, 19.3+/-3.4 Ma; Muraltia, 21.0+/-3.5 Ma) pre-dating the establishment of the Benguela current (intermittent in the middle to late Oligocene and markedly intensifying in the late Miocene), and summer-dry climate in the Cape region. However, the later increase in species numbers is contemporaneous with these climatic phenomena. Results of dispersal-vicariance analyses indicate that major clades in Muraltia diversified from the southwestern and northwestern Cape, where most of the species are found today.


Subject(s)
Biodiversity , Demography , Evolution, Molecular , Genetic Speciation , Phylogeny , Polygalaceae/genetics , Base Sequence , Bayes Theorem , Climate , DNA Primers , Geography , Models, Genetic , Molecular Sequence Data , Plastids/genetics , Polygalaceae/classification , RNA, Ribosomal/genetics , Sequence Analysis, DNA , South Africa , Species Specificity
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