Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 373
Filter
1.
Cell Host Microbe ; 29(1): 132-144.e3, 2021 01 13.
Article in English | MEDLINE | ID: mdl-33120114

ABSTRACT

Glycans, the most diverse biopolymer, are shaped by evolutionary pressures stemming from host-microbe interactions. Here, we present machine learning and bioinformatics methods to leverage the evolutionary information present in glycans to gain insights into how pathogens and commensals interact with hosts. By using techniques from natural language processing, we develop deep-learning models for glycans that are trained on a curated dataset of 19,299 unique glycans and can be used to study and predict glycan functions. We show that these models can be utilized to predict glycan immunogenicity and the pathogenicity of bacterial strains, as well as investigate glycan-mediated immune evasion via molecular mimicry. We also develop glycan-alignment methods and use these to analyze virulence-determining glycan motifs in the capsular polysaccharides of bacterial pathogens. These resources enable one to identify and study glycan motifs involved in immunogenicity, pathogenicity, molecular mimicry, and immune evasion, expanding our understanding of host-microbe interactions.


Subject(s)
Bacteria/pathogenicity , Bacterial Physiological Phenomena , Deep Learning , Host Microbial Interactions , Polysaccharides, Bacterial , Polysaccharides , Animals , Bacterial Capsules/chemistry , Bacterial Capsules/physiology , Computational Biology , Humans , Immune Evasion , Natural Language Processing , Polysaccharides/chemistry , Polysaccharides/immunology , Polysaccharides/physiology , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/immunology , Polysaccharides, Bacterial/physiology , Symbiosis , Virulence
2.
J Bacteriol ; 203(2)2020 12 18.
Article in English | MEDLINE | ID: mdl-33077637

ABSTRACT

Staphylococcus aureus capsule polysaccharide is an important antiphagocytic virulence factor. The cap genes are regulated at the promoter element (Pcap) upstream of the cap operon. Pcap, which consists of a dominant SigB-dependent promoter and a weaker upstream SigA-dependent promoter, is activated by global regulator MgrA. How MgrA activates capsule is unclear. Here, we showed that MgrA directly bound to the Pcap region and affected the SigA-dependent promoter. Interestingly, an electrophoretic mobility shift assay showed that MgrA bound to a large region of Pcap, mainly downstream of the SigA-dependent promoter. We further showed that the ArlRS two-component system and the Agr quorum sensing system activated capsule primarily through MgrA in the early growth phases.IMPORTANCE The virulence of Staphylococcus aureus depends on the expression of various virulence factors, which is governed by a complex regulatory network. We have been using capsule as a model virulence factor to study virulence gene regulation in S. aureus MgrA is one of the regulators of capsule and has a major effect on capsule production. However, how MgrA regulates capsule genes is not understood. In this study, we were able to define the mechanism involving MgrA regulation of capsule. In addition, we also delineated the role of MgrA in capsule regulatory pathways involving the key virulence regulators Agr and Arl. This study further advances our understanding of virulence gene regulation in S. aureus, an important human pathogen.


Subject(s)
Bacterial Capsules/chemistry , Immunoglobulin A, Secretory/physiology , Polysaccharides, Bacterial/physiology , Promoter Regions, Genetic/physiology , Staphylococcus aureus/physiology , Virulence Factors/physiology , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Electrophoretic Mobility Shift Assay , Immunoblotting , Immunoglobulin A, Secretory/genetics , Mutation , Polysaccharides, Bacterial/genetics , RNA, Bacterial/isolation & purification , RNA, Bacterial/physiology , Real-Time Polymerase Chain Reaction , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Reverse Transcription , Staphylococcus aureus/genetics , Staphylococcus aureus/pathogenicity , Virulence/genetics , Virulence Factors/genetics
3.
Mol Microbiol ; 114(4): 582-596, 2020 10.
Article in English | MEDLINE | ID: mdl-32515029

ABSTRACT

The biosynthetic machinery for cell wall polysaccharide (CWPS) production in lactococci is encoded by a large gene cluster, designated cwps. This locus displays considerable variation among lactococcal genomes, previously prompting a classification into three distinct genotypes (A-C). In the present study, the cwps loci of 107 lactococcal strains were compared, revealing the presence of a fourth cwps genotype (type D). Lactococcal CWPSs are comprised of two saccharidic structures: a peptidoglycan-embedded rhamnan backbone polymer to which a surface-exposed, poly/oligosaccharidic side-chain is covalently linked. Chemical structures of the side-chain of seven lactococcal strains were elucidated, highlighting their diverse and strain-specific nature. Furthermore, a link between cwps genotype and chemical structure was derived based on the number of glycosyltransferase-encoding genes in the cwps cluster and the presence of conserved genes encoding the presumed priming glycosyltransferase. This facilitates predictions of several structural features of lactococcal CWPSs including (a) whether the CWPS possesses short oligo/polysaccharide side-chains, (b) the number of component monosaccharides in a given CWPS structure, (c) the order of monosaccharide incorporation into the repeating units of the side-chain (for C-type strains), (d) the presence of Galf and phosphodiester bonds in the side-chain, and (e) the presence of glycerol phosphate substituents in the side-chain.


Subject(s)
Cell Wall/genetics , Lactococcus/genetics , Polysaccharides, Bacterial/genetics , Bacterial Proteins/metabolism , Cell Wall/metabolism , Glycosyltransferases/metabolism , Lactococcus/metabolism , Lactococcus lactis/genetics , Lactococcus lactis/metabolism , Multigene Family/genetics , Peptidoglycan/metabolism , Polysaccharides/metabolism , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/physiology
4.
Curr Opin Microbiol ; 54: 37-42, 2020 04.
Article in English | MEDLINE | ID: mdl-32035372

ABSTRACT

Kingella kingae is a gram-negative coccobacillus that is a fastidious commensal organism in the oropharynx and is being recognized increasingly as a common cause of osteoarticular infections and other invasive diseases in young children. The pathogenesis of K. kingae disease begins with bacterial adherence to respiratory epithelium, followed by translocation across the epithelial barrier, survival in the bloodstream, and dissemination to distant sites, including bones, joints, and the endocardium, among others. Characterization of the determinants of K. kingae pathogenicity has revealed a novel model of adherence that involves the interplay of type IV pili, a non-pilus adhesin, and a polysaccharide capsule and a novel model of resistance to serum killing and neutrophil killing that involves complementary functions of a polysaccharide capsule and an exopolysaccharide. These models likely apply to other bacterial pathogens as well.


Subject(s)
Kingella kingae/pathogenicity , Neisseriaceae Infections/microbiology , Virulence Factors/physiology , Adhesins, Bacterial/physiology , Bacterial Adhesion , Bacterial Capsules/physiology , Bacterial Toxins/genetics , Bacterial Toxins/metabolism , Blood/microbiology , Blood Bactericidal Activity , Child, Preschool , Fimbriae, Bacterial/chemistry , Gene Expression Regulation, Bacterial , Humans , Infant , Kingella kingae/genetics , Kingella kingae/growth & development , Neisseriaceae Infections/immunology , Neutrophils/immunology , Polysaccharides, Bacterial/physiology , Respiratory Mucosa/microbiology , Virulence/genetics , Virulence Factors/genetics
5.
Mol Plant Pathol ; 20(12): 1740-1747, 2019 12.
Article in English | MEDLINE | ID: mdl-31560834

ABSTRACT

The Gram-negative soil-borne bacterium Ralstonia solanacearum first infects roots of host plants and then invades xylem vessels. In xylem vessels, the bacteria grow vigorously and produce exopolysaccharides (EPSs) to cause a wilt symptom on host plants. The EPSs are thus the main virulence factors of R. solanacearum. The strain OE1-1 of R. solanacearum produces methyl 3-hydroxymyristate as a quorum-sensing (QS) signal, and senses this QS signal, activating QS. The QS-activated LysR-type transcriptional regulator PhcA induces the production of virulence-related metabolites including ralfuranone and the major EPS, EPS I. To elucidate the function of EPS I, the transcriptomes of R. solanacearum strains were analysed using RNA sequencing technology. The expression of 97.2% of the positively QS-regulated genes was down-regulated in the epsB-deleted mutant ΔepsB, which lost its EPS I productivity. Furthermore, expression of 98.0% of the negatively QS-regulated genes was up-regulated in ΔepsB. The deficiency to produce EPS I led to a significantly suppressed ralfuranone productivity and significantly enhanced swimming motility, which are suppressed by QS, but did not affect the expression levels of phcA and phcB, which encode a methyltransferase required for methyl 3-hydroxymyristate production. Overall, QS-dependently produced EPS I may be associated with the feedback loop of QS.


Subject(s)
Polysaccharides, Bacterial/physiology , Quorum Sensing , Ralstonia solanacearum/physiology , Feedback, Physiological , Myristates/metabolism , Ralstonia solanacearum/pathogenicity
6.
PLoS One ; 14(9): e0222302, 2019.
Article in English | MEDLINE | ID: mdl-31513660

ABSTRACT

The demand for agricultural crops continues to escalate with an increasing population. To meet this demand, marginal land can be used as a sustainable source for increased plant productivity. However, moisture stress not only affects crop growth and productivity but also induces plants' susceptibility to various diseases. The positive role of plant growth hormone, salicylic acid (SA), on the defence systems of plants has been well documented. With this in mind, a combination of plant growth promoting rhizobacteria (PGPR) and SA was used to evaluate its performance on wheat grown under rainfed conditions (average moisture 10-14%). The selected bacterial strains were characterized for proline production, indole-3-acetic acid (IAA), hydrogen cyanide (HCN), ammonia (NH3), and exopolysaccharides (EPS). Wheat seeds of two genotypes, Inqilab-91 (drought tolerant) and Shahkar-2013 (drought sensitive), which differed in terms of their sensitivity to drought stress, were soaked for three hours prior to sowing in 24-hour old cultures of the bacterial strains Planomicrobium chinense strain P1 (accession no. MF616408) and Bacillus cereus strain P2 (accession no. MF616406). SA was applied (150 mg/L), as a foliar spray on one-month-old wheat seedlings. A significant reduction in the physiological parameters was noted in the plants grown in rainfed conditions but the PGPR and SA treatment effectively ameliorated the adverse effects of moisture stress. The wheat plants treated with PGPR and SA showed significant increases in leaf protein and sugar contents and maintained higher chlorophyll content, chlorophyll fluorescence (fv/fm) and performance index (PI) under rainfed conditions. Leaf proline content, lipid peroxidation, and antioxidant enzyme activity were higher in the non-inoculated plants grown in rainfed conditions but significantly reduced in the inoculated plants of both genotypes. Integrative use of a combination of PGPR strains and SA appears to be a promising and eco-friendly strategy for reducing moisture stress in plants.


Subject(s)
Burkholderiales/metabolism , Plant Growth Regulators/metabolism , Triticum/growth & development , Ammonia/metabolism , Chlorophyll/metabolism , Droughts , Hydrogen Cyanide/metabolism , Indoleacetic Acids/metabolism , Plant Development/drug effects , Plant Leaves/growth & development , Plant Roots/growth & development , Polysaccharides, Bacterial/metabolism , Polysaccharides, Bacterial/physiology , Proline/metabolism , Salicylic Acid/metabolism , Seedlings/growth & development , Soil Microbiology , Stress, Physiological/drug effects , Triticum/metabolism
7.
Mol Microbiol ; 112(4): 1083-1099, 2019 10.
Article in English | MEDLINE | ID: mdl-31283061

ABSTRACT

Capsular polysaccharide (CP) biosynthesis in Staphylococcus aureus is tightly controlled resulting in a heterogeneous phenotype within a population and CP being mainly detectable in nongrowing cells. Expression of the corresponding biosynthesis gene cluster is driven by one promoter element (Pcap ). Here, we demonstrate that Pcap contains a main SigB-dependent promoter. The SigB consensus motif overlaps with a previously described inverted repeat (IR) that is crucial for cap expression. The essentiality of the IR is derived from this region acting as a SigB binding site rather than as an operator site for the proposed cap activators RbsR and MsaB. Furthermore, Pcap contains an extensive upstream region harboring a weak SigA-dependent promoter and binding sites for cap repressors such as SaeR, CodY and Rot. Heterogeneous CP synthesis is determined by SigB activity and repressor binding to the upstream region. SigB dependency and regulation by the upstream repressors are also sufficient to explain the temporal gene expression pattern at the transcriptional level. However, CP synthesis remains growth phase-dependent even when transcription is rendered constitutive, suggesting additional posttranscriptional regulatory circuits. Thus, the interference of multiple repressors with SigB-dependent promoter activity as well as post-transcriptional mechanisms ensure the appropriate regulation of CP synthesis.


Subject(s)
Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/metabolism , Staphylococcus aureus/genetics , Bacterial Capsules/metabolism , Bacterial Proteins/metabolism , Binding Sites/genetics , Gene Expression Regulation, Bacterial/genetics , Multigene Family/genetics , Operon/genetics , Polysaccharides/metabolism , Polysaccharides, Bacterial/physiology , Promoter Regions, Genetic/genetics , Protein Binding/genetics , Repressor Proteins/metabolism , Sigma Factor/metabolism , Staphylococcal Infections/metabolism , Staphylococcus aureus/metabolism , Transcription Factors/metabolism , Transcription, Genetic/genetics
8.
Microbiol Spectr ; 7(2)2019 03.
Article in English | MEDLINE | ID: mdl-30977464

ABSTRACT

The polysaccharide capsule of Streptococcus pneumoniae is the dominant surface structure of the organism and plays a critical role in virulence, principally by interfering with host opsonophagocytic clearance mechanisms. The capsule is the target of current pneumococcal vaccines, but there are 98 currently recognised polysaccharide serotypes and protection is strictly serotype-specific. Widespread use of these vaccines is driving changes in serotype prevalence in both carriage and disease. This chapter summarises current knowledge on the role of the capsule and its regulation in pathogenesis, the mechanisms of capsule synthesis, the genetic basis for serotype differences, and provides insights into how so many structurally distinct capsular serotypes have evolved. Such knowledge will inform ongoing refinement of pneumococcal vaccination strategies.


Subject(s)
Bacterial Capsules/physiology , Polysaccharides, Bacterial/physiology , Streptococcus pneumoniae/physiology , Animals , Bacterial Capsules/genetics , Bacterial Capsules/immunology , Bacterial Capsules/metabolism , Humans , Pneumococcal Vaccines/administration & dosage , Pneumococcal Vaccines/immunology , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/genetics , Polysaccharides, Bacterial/immunology , Streptococcus pneumoniae/immunology , Streptococcus pneumoniae/metabolism , Streptococcus pneumoniae/pathogenicity
9.
Mol Microbiol ; 111(6): 1571-1591, 2019 06.
Article in English | MEDLINE | ID: mdl-30873665

ABSTRACT

Polysaccharide intercellular adhesin (PIA)-associated biofilm formation is mediated by the intercellular adhesin (ica) locus and represents a major pathomechanism of Staphylococcus epidermidis. Here, we report on a novel long non-coding (nc)RNA, named IcaZ, which is approximately 400 nucleotides in size. icaZ is located downstream of the ica repressor gene icaR and partially overlaps with the icaR 3' UTR. icaZ exclusively exists in ica-positive S. epidermidis, but not in S. aureus or other staphylococci. Inactivation of the gene completely abolishes PIA production. IcaZ is transcribed as a primary transcript from its own promoter during early- and mid-exponential growth and its transcription is induced by low temperature, ethanol and salt stress. IcaZ targets the icaR 5' UTR and hampers icaR mRNA translation, which alleviates repression of icaADBC operon transcription and results in PIA production. Interestingly, other than in S. aureus, posttranscriptional control of icaR mRNA in S. epidermidis does not involve icaR mRNA 5'/3' UTR base pairing. This suggests major structural and functional differences in icaADBC operon regulation between the two species that also involve the recruitment of ncRNAs. Together, the IcaZ ncRNA represents an unprecedented novel species-specific player involved in the control of PIA production in NBSP S. epidermidis.


Subject(s)
Biofilms/growth & development , Gene Expression Regulation, Bacterial , Polysaccharides, Bacterial/physiology , RNA, Untranslated/genetics , Staphylococcus epidermidis/genetics , Bacterial Adhesion , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Operon , Promoter Regions, Genetic , Staphylococcus epidermidis/growth & development , Transcription, Genetic
10.
Inflamm Res ; 68(5): 397-413, 2019 May.
Article in English | MEDLINE | ID: mdl-30887082

ABSTRACT

OBJECTIVE: Pseudomonas aeruginosa effectively facilitate resistance to phagocyte killing by biofilm formation. However, the cross talk between biofilm components and phagocytes is still unclear. We hypothesize that a biofilm provides a concentrated extracellular source of LPS, DNA and exopolysaccharides (EPS), which polarize neighbouring phagocytes into an adverse hyperinflammatory state of activation. METHODS: We measured the release of a panel of mediators produced in vitro by murine neutrophils and macrophages exposed to various biofilm components of P. aeruginosa cultures. RESULTS: We found that conditioned media from a high biofilm-producing strain of P. aeruginosa, PAR5, accumulated high concentrations of extracellular bacterial LPS, DNA and EPS by 72 h. These conditioned media induced phagocytes to release a hyperinflammatory pattern of mediators, with enhanced levels of TNF-α, IL-6, IL12p40, PGE2 and NO. Moreover, the phagocytes also upregulated COX-2 and iNOS with no influence on the expression of arginase-1. CONCLUSIONS: Phagocytes exposed to biofilm microenvironment, called by us biofilm-associated neutrophils/macrophages (BANs/BAMs), display secretory properties similar to that of N1/M1-type phagocytes. These results suggest that in vivo high concentrations of LPS and DNA, trapped in biofilm by EPS, might convert infiltrating phagocytes into cells responsible for tissue injury without direct contact with bacteria and phagocytosis.


Subject(s)
Biofilms , Macrophages/immunology , Neutrophils/immunology , Pseudomonas aeruginosa/physiology , Animals , Cells, Cultured , Cytokines/immunology , DNA, Bacterial , Inflammation/immunology , Lipopolysaccharides , Mice, Inbred CBA , Polysaccharides, Bacterial/physiology
11.
PLoS Pathog ; 15(2): e1007571, 2019 02.
Article in English | MEDLINE | ID: mdl-30742693

ABSTRACT

Bacterial pathogens have evolved strategies that enable them to invade tissues and spread within the host. Enterococcus faecalis is a leading cause of local and disseminated multidrug-resistant hospital infections, but the molecular mechanisms used by this non-motile bacterium to penetrate surfaces and translocate through tissues remain largely unexplored. Here we present experimental evidence indicating that E. faecalis generates exopolysaccharides containing ß-1,6-linked poly-N-acetylglucosamine (polyGlcNAc) as a mechanism to successfully penetrate semisolid surfaces and translocate through human epithelial cell monolayers. Genetic screening and molecular analyses of mutant strains identified glnA, rpiA and epaX as genes critically required for optimal E. faecalis penetration and translocation. Mechanistically, GlnA and RpiA cooperated to generate uridine diphosphate N-acetylglucosamine (UDP-GlcNAc) that was utilized by EpaX to synthesize polyGlcNAc-containing polymers. Notably, exogenous supplementation with polymeric N-acetylglucosamine (PNAG) restored surface penetration by E. faecalis mutants devoid of EpaX. Our study uncovers an unexpected mechanism whereby the RpiA-GlnA-EpaX metabolic axis enables production of polyGlcNAc-containing polysaccharides that endow E. faecalis with the ability to penetrate surfaces. Hence, targeting carbohydrate metabolism or inhibiting biosynthesis of polyGlcNAc-containing exopolymers may represent a new strategy to more effectively confront enterococcal infections in the clinic.


Subject(s)
Enterococcus faecalis/metabolism , Extracellular Polymeric Substance Matrix/physiology , Polysaccharides, Bacterial/physiology , Bacterial Proteins , Enterococcus faecalis/pathogenicity , Extracellular Polymeric Substance Matrix/metabolism , Gram-Positive Bacterial Infections , Humans , Polysaccharides, Bacterial/metabolism
12.
J Gen Appl Microbiol ; 65(1): 39-46, 2019 Mar 08.
Article in English | MEDLINE | ID: mdl-29998926

ABSTRACT

The clonal strains, phycoerythrin(PE)-rich- and PE-poor strains, of the unicellular, fresh water cyanobacterium Aphanothece sacrum (Suringar) Okada (Suizenji Nori, in Japanese) were isolated from traditional open-air aquafarms in Japan. A. sacrum appeared to be oligotrophic on the basis of its growth characteristics. The optimum temperature for growth was around 20°C. Maximum growth and biomass increase at 20°C was obtained under light intensities between 40 to 80 µmol m-2 s-1 (fluorescent lamps, 12 h light/12 h dark cycles) and between 40 to 120 µmol m-2 s-1 for PE-rich and PE-poor strains, respectively, of A. sacrum . Purified exopolysaccharide (EPS) of A. sacrum has a molecular weight of ca. 104 kDa with five major monosaccharides (glucose, xylose, rhamnose, galactose and mannose; ≥85 mol%). We also deciphered the whole genome sequence of the two strains of A. sacrum. The putative genes involved in the polymerization, chain length control, and export of EPS would contribute to understand the biosynthetic process of their extremely high molecular weight EPS. The putative genes encoding Wzx-Wzy-Wzz- and Wza-Wzb-Wzc were conserved in the A. sacrum strains FPU1 and FPU3. This result suggests that the Wzy-dependent pathway participates in the EPS production of A. sacrum.


Subject(s)
Cyanobacteria/chemistry , Fresh Water/microbiology , Polysaccharides, Bacterial/genetics , Polysaccharides, Bacterial/physiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biological Transport , Cyanobacteria/classification , Cyanobacteria/genetics , Cyanobacteria/growth & development , Genome, Bacterial/genetics , Light , Molecular Weight , Monosaccharides , Phototrophic Processes , Phylogeny , Polymerization , Polysaccharides, Bacterial/biosynthesis , Polysaccharides, Bacterial/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis , Temperature
14.
Mol Biol Rep ; 46(1): 1079-1091, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30554311

ABSTRACT

In this paper we report the isolation and taxonomic characterization of exopolysaccharide (EPS) producing bacteria followed by the role of EPS in conferring acid tolerance to the soil bacteria Bacillus amyloliquefaciens p16. The role of EPS in promoting soil aggregation is also presented. A total of 75 isolates were tested for acid tolerance and biofilm production under acid stress of which, 54 isolates were further tested for EPS production. Out of the 54 isolates, 28 isolates produced EPS in the range of (67.88 and 219.96 µg/ml) with B. amyloliquefaciens p16 showing the highest production. The 28 isolates characterized for phenotypic and molecular traits mostly belonged to the members of the genera Bacillus, Brevibacillus, Brevibacterium, Paenibacillus, Serretia, Pseudomonas, Arthrobacter and Lysinibacillus. The monosaccharide components of the EPS produced by B. amyloliquefaciens p16 shifted from galactose to arabinose under acid stress as revealed through HPLC analysis. Inactivation of the epsB gene encoding putative bacterial protein tyrosine kinase (BY-kinases) in B. amyloliquefaciens p16 resulted in significantly less EPS (33.23 µg/ml) production compared to wild-type (WT) (223.87 µg/ml). The mutant (B. amyloliquefaciens 6A5) was barely able to survive in pH 4.5 unlike that of the WT. Further, inoculation of the WT and mutant B. amyloliquefaciens 6A5 in the soil resulted in formation of small sized soil aggregates (42.41 mm) with less water holding capacity (27.67%) as compared to the soil treated with WT that produced larger soil aggregates of size 80.59 mm with higher 53.90% water holding capacity. This study indicates that EPS produced by acid-tolerant B. amyloliquefaciens p16 can not only impart acid tolerance to the bacteria but also aids in promoting soil aggregation when applied to the soil.


Subject(s)
Bacillus amyloliquefaciens/metabolism , Polysaccharides, Bacterial/physiology , Bacteria/genetics , Bacteria/metabolism , Biofilms , Hydrogen-Ion Concentration , Polysaccharides, Bacterial/metabolism , RNA, Ribosomal, 16S/genetics , Soil/chemistry , Soil Microbiology
15.
Trends Microbiol ; 26(12): 1008-1021, 2018 12.
Article in English | MEDLINE | ID: mdl-30037568

ABSTRACT

Bacterial pathogens and commensals are surrounded by diverse surface polysaccharides which include capsules and lipopolysaccharides. These carbohydrates play a vital role in bacterial ecology and interactions with the environment. Here, we review recent rapid advancements in this field, which have improved our understanding of the roles, structures, and genetics of bacterial polysaccharide antigens. Genetic loci encoding the biosynthesis of these antigens may have evolved as bacterial diversity-generating machines, driven by selection from a variety of forces, including host immunity, bacteriophages, and cell-cell interactions. We argue that the high adaptive potential of polysaccharide antigens should be taken into account in the design of polysaccharide-targeting medical interventions like conjugate vaccines and phage-based therapies.


Subject(s)
Bacteria/genetics , Bacteria/metabolism , Bacterial Capsules/chemistry , Bacterial Capsules/genetics , Bacterial Capsules/physiology , Biodiversity , Animals , Antigens, Bacterial/chemistry , Antigens, Bacterial/genetics , Antigens, Bacterial/physiology , Bacteria/pathogenicity , Bacterial Capsules/immunology , Cell Communication , Ecology , Evolution, Molecular , Genetic Loci , Humans , Immunity , Lipopolysaccharides/classification , Lipopolysaccharides/genetics , Lipopolysaccharides/immunology , Lipopolysaccharides/physiology , Phage Therapy , Polysaccharides , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/genetics , Polysaccharides, Bacterial/immunology , Polysaccharides, Bacterial/physiology , Serotyping , Symbiosis , Vaccines, Conjugate
16.
J Microbiol ; 56(7): 449-457, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29948830

ABSTRACT

Bacterial biofilms remain a persistent threat to human healthcare due to their role in the development of antimicrobial resistance. To combat multi-drug resistant pathogens, it is crucial to enhance our understanding of not only the regulation of biofilm formation, but also its contribution to bacterial virulence. Iron acquisition lies at the crux of these two subjects. In this review, we discuss the role of iron acquisition in biofilm formation and how hosts impede this mechanism to defend against pathogens. We also discuss recent findings that suggest that biofilm formation can also have the reciprocal effect, influencing siderophore production and iron sequestration.


Subject(s)
Biofilms/growth & development , Iron/metabolism , Pseudomonas aeruginosa/physiology , Animals , Cystic Fibrosis/microbiology , Host-Pathogen Interactions , Humans , Mice , Polysaccharides, Bacterial/physiology , Pseudomonas aeruginosa/growth & development , Pseudomonas aeruginosa/immunology , Pseudomonas aeruginosa/pathogenicity , Siderophores/physiology , Virulence Factors
17.
Environ Microbiol Rep ; 10(3): 355-368, 2018 06.
Article in English | MEDLINE | ID: mdl-29633524

ABSTRACT

Rhizobium leguminosarum bv. trifolii is a soil bacterium that establishes symbiosis with clover (Trifolium spp.) under nitrogen-limited conditions. This microorganism produces exopolysaccharide (EPS), which plays an important role in symbiotic interactions with the host plant. The aim of the current study was to establish the role of EPS in the response of R. leguminosarum bv. trifolii cells, free-living and during symbiosis, to zinc stress. We show that EPS-deficient mutants were more sensitive to Zn2+ exposure than EPS-producing strains, and that EPS overexpression conferred some protection onto the strains beyond that observed in the wild type. Exposure of the bacteria to Zn2+ ions stimulated EPS and biofilm production, and increased cell hydrophobicity. However, zinc stress negatively affected the motility and attachment of bacteria to clover roots, as well as the symbiosis with the host plant. In the presence of Zn2+ ions, cell viability, root attachment, biofilm formation and symbiotic efficiency of EPS-overproducing strains were significantly higher than those of the EPS-deficient mutants. We conclude that EPS plays an important role in the adaptation of rhizobia to zinc stress, in both the free-living stage and during symbiosis.


Subject(s)
Polysaccharides, Bacterial/physiology , Rhizobium leguminosarum/growth & development , Stress, Physiological , Symbiosis , Trifolium/microbiology , Zinc/metabolism , Biofilms , Mutation , Rhizobium leguminosarum/genetics
18.
J Bacteriol ; 200(7)2018 04 01.
Article in English | MEDLINE | ID: mdl-29311278

ABSTRACT

Biofilm-forming bacteria typically deposit layers of polysaccharides on the surfaces they inhabit; hence, polysaccharides are their immediate environment on such surfaces. Previously, we showed that many biofilm-forming bacteria preferentially spread in the direction of aligned and densely packed polysaccharide fibers in compressed substrates, a behavior we referred to as polymertropism. This arrangement of polysaccharide fibers is likely to be similar to that found in the "slime" trails deposited by many biofilm-forming bacteria and would explain previous observations that bacteria tend to follow these trails of polysaccharides. Here, we show that groups of cells or flares spread more rapidly on substrates containing aligned and densely packed polysaccharide fibers. Flares also persist longer, tend to hold their trajectories parallel to the long axes of polysaccharide fibers longer, and ultimately show an increase in displacement away from their origin. On the basis of these findings and others, we propose a model for polymertropism. Namely, we suggest that the packing of the aligned polymers increases the efficiency of surface spreading in the direction of the polymer's long axes; therefore, bacteria tend to spread more rapidly in this direction. Additional work suggests that bacteria can leverage polymertropism, and presumably more efficient surface spreading, for a survival advantage. In particular, when two bacterial species were placed in close proximity and in competition with each other, the ability of one species to move rapidly and directly away from the other by utilizing the aligned polymers of compressed agar substrates led to a clear survival benefit.IMPORTANCE The directed movement of bacteria on compressed substrates was first described in the 1940s and referred to as elasticotaxis (R. Y. Stanier, J Bacteriol 44:405-412, 1942). More recently, this behavior was referred to as polymertropism, as it seems to be a response to the nematic alignment and tight packing of polymers in the substrate (D. J. Lemon, X. Yang, P. Srivastava, Y. Y. Luk, A. G. Garza, Sci Rep 7:7643, 2017, https://doi.org/10.1038/s41598-017-07486-0). The data presented here suggest that bacteria are more efficient at surface spreading when the polymers in the substrate are arranged in this manner. These data also suggest that bacteria can leverage polymertropism, and presumably more efficient surface spreading, for a survival advantage. Namely, one bacterial species was able to use its strong polymertropism response to escape from and survive competition with another species that normally outcompetes it.


Subject(s)
Bacterial Physiological Phenomena , Biofilms , Polysaccharides, Bacterial/physiology , Bacteria/chemistry , Bacterial Adhesion/physiology , Movement , Polymers/chemistry , Polysaccharides, Bacterial/chemistry , Surface Properties
19.
Adv Dent Res ; 29(1): 86-92, 2018 02.
Article in English | MEDLINE | ID: mdl-29355421

ABSTRACT

Cariogenic biofilms are highly structured microbial communities embedded in an extracellular matrix, a multifunctional scaffold that is essential for the existence of the biofilm lifestyle and full expression of virulence. The extracellular matrix provides the physical and biological properties that enhance biofilm adhesion and cohesion, as well as create a diffusion-modulating milieu, protecting the resident microbes and facilitating the formation of localized acidic pH niches. These biochemical properties pose significant challenges for the development of effective antibiofilm therapeutics to control dental caries. Conventional approaches focusing solely on antimicrobial activity or enhancing remineralization may not achieve maximal efficacy within the complex biofilm microenvironment. Recent approaches disrupting the biofilm microbial community and the microenvironment have emerged, including specific targeting of cariogenic pathogens, modulation of biofilm pH, and synergistic combination of bacterial killing and matrix degradation. Furthermore, new "smart" nanotechnologies that trigger drug release or activation in response to acidic pH are being developed that could enhance the efficacy of current and prospective chemical modalities. Therapeutic strategies that can locally disrupt the pathogenic niche by targeting the biofilm structure and its microenvironment to eliminate the embedded microorganism and facilitate the action of remineralizing agents may lead to enhanced and precise anticaries approaches.


Subject(s)
Biofilms , Dental Caries/microbiology , Dental Caries/prevention & control , Anti-Bacterial Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Arginine/pharmacology , Bacterial Adhesion , Cariostatic Agents/pharmacology , Cellular Microenvironment/physiology , Extracellular Matrix/microbiology , Humans , Hydrogen-Ion Concentration , Nanotechnology/trends , Polysaccharides, Bacterial/physiology , Streptococcus/pathogenicity
20.
PLoS One ; 12(10): e0186256, 2017.
Article in English | MEDLINE | ID: mdl-29023506

ABSTRACT

Caries-associated biofilms induce loss of calcium from tooth surfaces in the presence of dietary carbohydrates. Exopolysaccharides (EPS) provide a matrix scaffold and an abundance of primary binding sites within biofilms. The role of EPS in binding calcium in cariogenic biofilms is only partially understood. Thus, the aim of the present study is to investigate the relationship between the calcium dissolution rates and calcium tolerance of caries-associated bacteria and yeast as well as to examine the properties of EPS to quantify its binding affinity for dissolved calcium. Calcium dissolution was measured by dissolution zones on Pikovskaya's agar. Calcium tolerance was assessed by isothermal microcalorimetry (IMC) by adding CaCl2 to the bacterial cultures. Acid-base titration and Fourier transform infrared (FTIR) spectroscopy were used to identify possible functional groups responsible for calcium binding, which was assessed by isothermal titration calorimetry (ITC). Lactobacillus spp. and mutans streptococci demonstrated calcium dissolution in the presence of different carbohydrates. All strains that demonstrated high dissolution rates also revealed higher rates of calcium tolerance by IMC. In addition, acidic functional groups were predominantly identified as possible binding sites for calcium ions by acid-base titration and FTIR. Finally, ITC revealed EPS to have a higher binding affinity for calcium compared, for example, to lactic acid. In conclusion, this study illustrates the role of EPS in terms of the calcium tolerance of cariogenic microbiota by determining the ability of EPS to control free calcium concentrations within the biofilms as a self-regulating mode of action in the pathogenesis of dental caries.


Subject(s)
Biofilms , Calcium/metabolism , Dental Caries/microbiology , Dietary Carbohydrates/metabolism , Polysaccharides, Bacterial/physiology , Calcium/chemistry , Spectroscopy, Fourier Transform Infrared
SELECTION OF CITATIONS
SEARCH DETAIL
...