A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- and stage-specific patterns of allergen expression.

BACKGROUND: Psoroptic mange, caused by infestation with the ectoparasitic mite, Psoroptes ovis, is highly contagious, resulting in intense pruritus and represents a major welfare and economic concern for the livestock industry Worldwide. Control relies on injectable endectocides and organophosphate dips, but concerns over residues, environmental contamination, and the development of resistance threaten the sustainability of this approach, highlighting interest in alternative control methods. However, development of vaccines and identification of chemotherapeutic targets is hampered by the lack of P. ovis transcriptomic and genomic resources. RESULTS: Building on the recent publication of the P. ovis draft genome, here we present a genomic analysis and transcriptomic atlas of gene expression in P. ovis revealing feeding- and stage-specific patterns of gene expression, including novel multigene families and allergens. Network-based clustering revealed 14 gene clusters demonstrating either single- or multi-stage specific gene expression patterns, with 3075 female-specific, 890 male-specific and 112, 217 and 526 transcripts showing larval, protonymph and tritonymph specific-expression, respectively. Detailed analysis of P. ovis allergens revealed stage-specific patterns of allergen gene expression, many of which were also enriched in "fed" mites and tritonymphs, highlighting an important feeding-related allergenicity in this developmental stage. Pair-wise analysis of differential expression between life-cycle stages identified patterns of sex-biased gene expression and also identified novel P. ovis multigene families including known allergens and novel genes with high levels of stage-specific expression. CONCLUSIONS: The genomic and transcriptomic atlas described here represents a unique resource for the acarid-research community, whilst the OrcAE platform makes this freely available, facilitating further community-led curation of the draft P. ovis genome.

Hyperparasitism of an Avian Ectoparasitic Hippoboscid Fly, Ornithomya anchineuria, by the Mite, Myialges Cf. Borealis, in Alberta, Canada.

Hippoboscid flies (Diptera: Hippoboscidae) include species that are ectoparasites of birds in the Northern Hemisphere, but little is known regarding their taxonomy, parasites, avian host associations, or geographical distribution in North America. In late August of 2013 and 2014, we collected hippoboscid flies from live birds trapped in mist nets as part of a banding study in Cypress Hills Interprovincial Park in southeastern Alberta, Canada. A total of 113 birds comprising 9 species was examined in 2013. Of these, 18 individuals were infested with 1-3 Ornithomya anchineuria Speiser (n = 22 flies; prevalence = 15.9%). Eight of these flies carried 1-8 adult female epidermoptid mites anchored to their ventral, posterior abdomens. Each female was associated with clusters of up to 30 stalked eggs. The first pair of tarsi on adult female mites was highly modified as anchors, indicating permanent attachment through the host cuticle. Morphological traits identified these mites as Myialges cf. borealis Mironov, Skirnisson, Thorarinsdottier and Nielsen. Cytochrome c oxidase subunit 1 ( COX1) gene sequences obtained for 2 mites were distinct from those previously reported for species of Myialges, being most similar to Myialges trinotoni Cooreman. The paucity of available gene sequences for Myialges and related genera of epidermoptid mites prevents any further conclusions regarding taxonomy. These findings extend previous reports of O. anchineuria from Pacific and Atlantic coasts of Canada inland to the central migratory flyway of the Northern Great Plains and expand the limited information available for Myialges spp.

Morphologic and Genotypic Characterization of Psoroptes Mites from Water Buffaloes in Egypt.

Species delimitation of Psoroptes spp. and identity of the parasite in water buffaloes remain poorly defined. In this study, Psoroptes infestation on three water buffalo farms in Egypt was examined based on morphometric characteristics, especially the opisthosomal setae of adult male mites. Clinical investigations showed that 28% (196/700) of the sampled animals had mange infestation. Microscopic examinations of 80 skin scrapings indicated the occurrence of Psoroptes mites in 17 (21.3%) samples, Sarcoptes mites in 27 (33.7%) samples, and the concurrence of both in 36 (45.0%) samples. Morphologically, the Psoroptes parasite was identified as Psoroptes natalensis. DNA sequence analysis of the second internal transcribed spacer (ITS2) in 11 representative samples confirmed the diagnosis and suggested the presence of a distinct variety of Psoroptes natalensis in Egypt.

Population identification and divergence threshold in Psoroptidae based on ribosomal ITS2 and mitochondrial COI genes.

Psoroptidae mites are a type of small mites with a wide range of hosts. The proliferation of Psoroptidae mites could cause symptoms such as severe itching, atopic dermatitis, and hair loss in infected animals. If severely infected, death can also occur. The morphological classification and identification of Psoroptidae mites is problematic due to the overlapping geographical distribution. In addition, there is no divergence threshold for molecular classification and identification. To solve this problem, gDNA was extracted from individual Psoroptes and Otodectes mites (China) for amplification of rDNA ITS2 and mtDNA COI. After that, the sequences obtained were aligned and analyzed with those retrieved from GenBank. Based on rDNA ITS2 sequences, Psoroptidae was divided into three genera, namely, Psoroptes, Chorioptes, and Otodectes, which was in accordance with morphological classification. The intraspecies, interspecies, and intergenera could be differentiated effectively, with thresholds ≤ 5.20, 6.18-14.86, and ≥15.72 %, respectively. However, based on mtDNA COI sequences, Psoroptidae was divided into four genera with Caparinia added, as Caparinia sp did not cluster with the other three genera. The intra- and interspecies could be differentiated effectively, but interspecies and intergenera could not. The intra- and interspecies identification thresholds were ≤ 2.12 and ≥10.93 %. Further analysis showed that host but not geographical isolation was found in Psoroptes and Chorioptes, whereas Otodectes mites parasitizing dogs and cats were the same species; neither host nor geographical isolation was observed. In conclusion, rDNA ITS2 is better than mtDNA COI for DNA barcoding in Psoroptidae.

Review and resolution of some nomenclatural issues regarding the genus Psoroptes (Acari: Psoroptidae), scab-mites of domestic and wild mammals.

Some classifications recognize a number of species in the scab-mite genus, Psoroptes, mites that are of considerable importance in livestock production and veterinary medicine. However, modern studies suggest that populations from some host species are not morphologically or genetically distinct, creating taxonomic confusion with older names, which treated mites from different hosts as separate species. We review the taxonomy and nomenclature of the genus and the two oldest binomens, most recently known as Psoroptes ovis and Psoroptes equi. Prior authors have attributed these names to various authorities, with most attributing both names to Hering (Nova Acta Phys-Med Acad Caesar Leopold-Carol Nat Curios 18(2):573-624, 1838). In particular, the priority between these names was recently a point of contention, with P. ovis being treated as junior synonym of P. equi. A review of all relevant nineteenth and twentieth century publications indicates, however, that these binomens should be cited as P. ovis (Viborg in Veterinair-Selskabets Skrifter 2:139-152, 1813) and P. equi (Raspail in Bull gener Theraput Med Chir 7:169-184, 1834), with the former having priority over the latter assuming their conspecificity. We also clarify attribution of the authorship and the type species of the genus Psoroptes.

Ectoparasites of goats in the UK.

The goat industry in the UK has expanded rapidly in recent years, but at present there is only a poor understanding of the prevalence of parasitic diseases in this farming system. Here, a questionnaire survey of 110 goat owners was used to address this issue. Problems with louse infestation in the previous 12 months were reported by 23% of owners and 19% reported mange. Chorioptic mange was the most common form, with 14 of 21 cases. Sarcoptic mage accounted for only 3 cases and demodex and psoroptic mange each made up 2 cases. Only 53 farmers (48%) said that they took preventative measures to protect their animals against ectoparasite infestation; 20 of these relied on macrocyclic lactones (MLs), the most common product specified was ivermectin. Therapeutic treatment was used by all respondents who said that they had experienced ectoparasites, and again ivermectin was the most common treatment. The use of fipronil was specified by 3 respondents, including one commercial meat producer. Four farmers said that they used antibiotics as an ectoparasiticide. This pattern of treatment for ectoparasites, with reliance on MLs, has implications for the inadvertent selection of resistance in endoparasites. The results suggest that ectoparasites are a major problem for many goat owners, both commercial and non-commercial, but that there is a need for better information for the goat producing community about the optimum approaches to parasite prevention and treatment.

Mites of the genus Paracoroptes Lavoipierre, 1955 (Acariformes: Psoroptidae)--skin parasites of the African monkeys of the family Cercopithecidae (Primates).

Two new species of Paracoroptes Lavoipierre, 1955 (Acariformes: Psoroptidae: Paracoroptinae) are described: Paracoroptes miopithecus sp. n. from Miopithecus talapoin (Schreber) and Paracoroptes piliocolobus sp. n. from Piliocolobus badius (Kerr) (Primates: Cercopithecidae)--both are from the Democratic Republic of the Congo. A key to all 6 species of the genus is provided and host-parasite relationships of its representatives are discussed.

Integrated Bayesian species delimitation and morphological diagnostics of chorioptic mange mites (Acariformes: Psoroptidae: Chorioptes).

The external morphology of adult and immature stages of mange mites of the genus Chorioptes was investigated with the aid of light and scanning electron microscopy. A molecular phylogeny of this genus was inferred based on six genes (18S, 28S rDNA, EF1-α, SRP54, HSP70, and CO1). The validity of four species (Ch. bovis, Ch. panda, Ch. texanus, and Ch. sweatmani sp. nov. described from the moose from Sweden, Finland, and Russia) was confirmed based on morphology and a Bayesian species delimitation analysis incorporating both gene tree uncertainties and incomplete lineage sorting via the coalescent process model in BPP. Sequence data for Ch. crewei and Ch. mydaus was not available but their morphology strongly suggests their validity. The six valid Chorioptes species are diagnosed using type and non-type specimens, and a key to species is provided. Ch. sweatmani differs from closely related Ch. texanus by the following features: in males, the body length, including the gnathosoma, is 380-405 µm (vs. 220-295 in Ch. texanus), the idiosoma is 3-4 times longer than setae cp (vs. 1.3-1.6 times longer), legs III are approximately three times longer than setae sRIII (vs. 1.8-2 times longer), the apical spur of tarsus III is curved (vs. straight), a spur near seta fIII base is not developed (vs. small but distinct); in females, setae h2 are 1.4-1.5 times shorter than legs IV (vs. about two times longer). Hosts and distribution records of Chorioptes species are summarized.

Molecular taxonomic relationships of Psoroptes and Chorioptes mites from China based on COI and 18S rDNA gene sequences.

In this present study, the mitochondrial DNA gene cytochrome coxidase subunit I (COI) and the small subunit ribosomal RNA (18S rDNA) gene were used to determine the taxonomic relationships of Psoroptes and Chorioptes mites from China. The neighbor-joining and maximum-parasimony approach were used to evaluate the evolutionary relatedness among different hosts in the genera Psoroptes and Chorioptes. Phylogenetic analysis showed that Psoroptes cuniculi and Psoroptes natalensis may be two different species within the genus Psoroptes, and Chorioptes texanus and Chorioptes panda are different species within the genus Chorioptes.

Chorioptes mites: re-evaluation of species integrity.

Chorioptes mites (Acari: Psoroptidae) are non-burrowing agents of mange which parasitize a wide range of domesticated and wild ungulates. Considerable historical confusion has surrounded the description and naming of the various species of Chorioptes. Here, the opisthosomal setae of male adult Chorioptes mites from a range of host species and geographic locations were subjected to detailed analysis. Discriminant analysis suggests the existence of three clear morphotypes. The first, Chorioptes bovis, is characterized by a very long seta 1 (ae) and short spatulate setae 2 (l4 and d5), whereas, in the second, Chorioptes texanus, setae 2 (l4 and d5) are longer and narrower than in C. bovis, but most of the other setae are shorter; this is particularly true for seta 1 (ae). A third morphotype is characterized by a seta 1 (ae) that is shorter than in C. bovis but longer than in C. texanus, long setae 2 (l4 and d5) and a long seta 6 (l5). The data are compared with previously published measurements. Although this analysis supports the validity of C. bovis and C. texanus as morphologically distinct, it also supports the existence of a proposed third species of Chorioptes, as described by Hestvik et al. in 2007, and suggests that the mites described by Sweatman in his classic 1958 description of C. texanus, which were obtained from the ears of semi-domesticated reindeer, are likely to have been specimens of this as yet unnamed species. The results show that there is a high degree of phenotypic plasticity in setal lengths. It is concluded that a statistical difference in the absolute measurement of any one seta is not a reliable species indicator; the relative sizes of groups of setae would appear to be more taxonomically informative and should be used when identifying Chorioptes morphologically.

The first outbreak of Chorioptes texanus (Acari: Psoroptidae) infestation in a cattle farm in Korea.

Mites in the genus Chorioptes cause a mild form of skin disease in both domestic and wild ruminants. In July 2006, dermatitis characterized by alopecia, marked lichenification, accumulation of crust, and fissuring was recognized in 14 out of 200 Holstein dairy cattle raised in the cattle farm of the National Institute of Animal Science in Cheonan, Republic of Korea. Skin lesions were distributed mainly over the tail base, and sacral and perineal regions. Microscopic examinations of skin scraping samples from severely affected areas revealed numerous mites of all developmental stages. Morphologically, pedicels of the mites were short and unjointed. The tarsal suckers occurred on the pedicels of all the legs in the male worm and on the first, second, and fourth pair of legs in the adult female worm. A single long seta at the tarsus of legs III and the length of legs II being about twice as long as legs IV in adult male mites were observed. Arising anterior to the inner-most spatulate seta was a short seta with an average of 26.4 +/- 5.8 microm in length. Also, the length of setae #4 on the opisthosomal lobes was relatively short. Based on these observations, the mites were identified as Choriptes texanus. Although the chorioptic mange may not influence the mortality rate in the affected farm, reports indicate that a decline in milk production can be observed. This is the first report of chorioptic infestation in a cattle farm from Korea.

Taxonomic priority in Psoroptes mange mites: P. ovis or P. equi?

The taxonomic priority of Psoroptes mange mites (Acari: Psoroptidae) is reviewed and the original species descriptions re-examined. The question of whether the name Psoroptes equi or Psoroptes ovis has priority has importance with respect to the descriptions used in any legislation required for compulsory treatment of infested animals. It is concluded that in the work by Hering [(1838) Nova Acta Physico-Medica Acadamiae Caesareae Leopoldino-Carolinae Naturae Curiosorum. Tomi 18, Pars 2, Vratislaviae und Bonn], which is generally assumed to present the type description, the first Psoroptes mite described is P. ovis, and that P. ovis (Hering 1838) should therefore, carry taxonomic priority for the synonomised genus.

Morphological and molecular comparison of host-derived populations of parasitic Psoroptes mites.

Infestation by parasitic Psoroptes mites (Acari: Psoroptidae) is an important cause of economic loss and welfare problems in livestock in many areas of the world. At least five species within this genus have been recognized, based on the host infested, the infestation site and differences in length of the opisthosomal setae of adult male mites. Here the integrity of these species is considered by subjecting populations of mites from a range of host species and geographical locations to simultaneous morphological and molecular genetic analyses. Morphological analysis showed that there were significant differences in shape and size between mite populations from different hosts, and that length of the outer opisthosomal setae in males and the homologous seta in females were the most important distinguishing character in adults. However, considerable variation in outer opisthosomal seta length was evident within and between populations of mites, and differences were not clearly related to host-species or geographical origin and did not support the accepted species differences. Molecular characterization using sequence data from the mitochondrial second internal transcribed spacer (ITS-2) region and microsatellite markers found little or no consistent host-related variation between the mite population samples. The results suggest that there is no case for considering the Psoroptes mites from the different hosts examined as separate species and that the morphological variation observed therefore may represent phenotypic adaptation to the local microenvironment on particular species of host.

Chorioptic mange in a wild Japanese serow.

Parasitologic and histopathologic examinations were performed on a wild Japanese serow (Capricornis crispus) with severe dermatitis from Tochigi, Japan in February 1999. The serow was infested with a large number Chorioptes bovis. Marked parakeratotic hyperkeratosis was characteristic of the lesions induced by these mites. Japanese serow is a new host of C. bovis.

Validity of species status of the parasitic mite Otodectes cynotis.

A combined molecular and phenotypic approach was used to determine whether ear mites of the genus Otodectes (Acari: Psoroptidae) belong to a single species. The second internal transcribed spacer (ITS 2) of the rDNA of 16 isolates from 11 cats, two dogs, one arctic fox and two ferrets originating from four different continents was characterized. In addition, mites from dog, cat and arctic fox were investigated morphologically. Sequence comparisons revealed five different, but closely related genotypes which did not segregate according to host species or geographical origin. Morphologically, mites of the three host species did not differ significantly in their body or leg sizes. These investigations support the view that ear mites of the genus Otodectes from different hosts and geographical origins belong to a single species, Otodectes cynotis (Hering).