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1.
Acta Biochim Pol ; 66(4): 585-588, 2019 Dec 05.
Article in English | MEDLINE | ID: mdl-31804790

ABSTRACT

Fluorescent tri-cyclic purine analogs, derivatives of isoguanine and adenine, were examined as potential substrates of purine-nucleoside phosphorylase. It was found previously that etheno- derivatives of both compounds are ribosylated in phosphate-free media, but ribosylation places in some instances differ from purine N9. New ribosides are examined as potential substrates of human blood PNP and indicators of this enzyme. Of these, N6-riboside of 1,N6-etheno-adenine was found the most promising.


Subject(s)
Adenine/chemistry , Glycosides/chemistry , Guanine/chemistry , Purine-Nucleoside Phosphorylase/blood , Adenine/pharmacology , Fluorescence , Guanine/pharmacology , Humans , Kinetics , Purine-Nucleoside Phosphorylase/isolation & purification , Purines/chemistry
2.
PLoS Negl Trop Dis ; 10(12): e0005178, 2016 12.
Article in English | MEDLINE | ID: mdl-27935959

ABSTRACT

Schistosoma mansoni do not have de novo purine pathways and rely on purine salvage for their purine supply. It has been demonstrated that, unlike humans, the S. mansoni is able to produce adenine directly from adenosine, although the enzyme responsible for this activity was unknown. In the present work we show that S. mansoni 5´-deoxy-5´-methylthioadenosine phosphorylase (MTAP, E.C. 2.4.2.28) is capable of use adenosine as a substrate to the production of adenine. Through kinetics assays, we show that the Schistosoma mansoni MTAP (SmMTAP), unlike the mammalian MTAP, uses adenosine substrate with the same efficiency as MTA phosphorolysis, which suggests that this enzyme is part of the purine pathway salvage in S. mansoni and could be a promising target for anti-schistosoma therapies. Here, we present 13 SmMTAP structures from the wild type (WT), including three single and one double mutant, and generate a solid structural framework for structure description. These crystal structures of SmMTAP reveal that the active site contains three substitutions within and near the active site when compared to it mammalian counterpart, thus opening up the possibility of developing specific inhibitors to the parasite MTAP. The structural and kinetic data for 5 substrates reveal the structural basis for this interaction, providing substract for inteligent design of new compounds for block this enzyme activity.


Subject(s)
Adenosine/metabolism , Models, Molecular , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/metabolism , Schistosoma mansoni/enzymology , Animals , Catalytic Domain , Crystallization , Crystallography, X-Ray , Humans , Kinetics , Metabolic Networks and Pathways , Mutation , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Purines/metabolism , Schistosoma mansoni/genetics , Sequence Alignment
3.
Biochem J ; 458(2): 225-37, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-24325449

ABSTRACT

StCKP1 (Solanum tuberosum cytokinin riboside phosphorylase) catalyses the interconversion of the N9-riboside form of the plant hormone CK (cytokinin), a subset of purines, with its most active free base form. StCKP1 prefers CK to unsubstituted aminopurines. The protein was discovered as a CK-binding activity in extracts of tuberizing potato stolon tips, from which it was isolated by affinity chromatography. The N-terminal amino acid sequence matched the translation product of a set of ESTs, enabling a complete mRNA sequence to be obtained by RACE-PCR. The predicted polypeptide includes a cleavable signal peptide and motifs for purine nucleoside phosphorylase activity. The expressed protein was assayed for purine nucleoside phosphorylase activity against CKs and adenine/adenosine. Isopentenyladenine, trans-zeatin, dihydrozeatin and adenine were converted into ribosides in the presence of ribose 1-phosphate. In the opposite direction, isopentenyladenosine, trans-zeatin riboside, dihydrozeatin riboside and adenosine were converted into their free bases in the presence of Pi. StCKP1 had no detectable ribohydrolase activity. Evidence is presented that StCKP1 is active in tubers as a negative regulator of CKs, prolonging endodormancy by a chill-reversible mechanism.


Subject(s)
Cytokinins/physiology , Plant Dormancy/physiology , Plant Proteins, Dietary/metabolism , Plant Tubers/metabolism , Purine-Nucleoside Phosphorylase/physiology , Solanum tuberosum/enzymology , Amino Acid Sequence , Cytokinins/genetics , Molecular Sequence Data , Plant Extracts/genetics , Plant Extracts/isolation & purification , Plant Extracts/metabolism , Plant Proteins, Dietary/genetics , Plant Proteins, Dietary/isolation & purification , Plant Tubers/genetics , Protein Binding , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Solanum tuberosum/genetics , Time Factors
4.
PLoS One ; 8(1): e55697, 2013.
Article in English | MEDLINE | ID: mdl-23383268

ABSTRACT

The presented study examines the phenomenon of the fluorescence under UV light excitation (312 nm) of E. coli cells expressing a novel metagenomic-derived putative methylthioadenosine phosphorylase gene, called rsfp, grown on LB agar supplemented with a fluorescent dye rhodamine B. For this purpose, an rsfp gene was cloned and expressed in an LMG194 E. coli strain using an arabinose promoter. The resulting RSFP protein was purified and its UV-VIS absorbance spectrum and emission spectrum were assayed. Simultaneously, the same spectroscopic studies were carried out for rhodamine B in the absence or presence of RSFP protein or native E. coli proteins, respectively. The results of the spectroscopic studies suggested that the fluorescence of E. coli cells expressing rsfp gene under UV illumination is due to the interaction of rhodamine B molecules with the RSFP protein. Finally, this interaction was proved by a crystallographic study and then by site-directed mutagenesis of rsfp gene sequence. The crystal structures of RSFP apo form (1.98 Å) and complex RSFP/RB (1.90 Å) show a trimer of RSFP molecules located on the crystallographic six fold screw axis. The RSFP complex with rhodamine B revealed the binding site for RB, in the pocket located on the interface between symmetry related monomers.


Subject(s)
Gene Library , Metagenomics , Purine-Nucleoside Phosphorylase/metabolism , Rhodamines/metabolism , Soil/analysis , Antarctic Regions , Binding Sites , Escherichia coli/genetics , Escherichia coli/metabolism , Models, Molecular , Molecular Docking Simulation , Protein Binding , Protein Conformation , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Recombinant Proteins , Rhodamines/chemistry , Spectrometry, Fluorescence , Spectrophotometry
5.
FEBS J ; 280(6): 1475-90, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23332162

ABSTRACT

Thermostable nucleoside phosphorylases are attractive biocatalysts for the synthesis of modified nucleosides. Hence we report on the recombinant expression of three 'high molecular mass' purine nucleoside phosphorylases (PNPs) derived from the thermophilic bacteria Deinococcus geothermalis, Geobacillus thermoglucosidasius and from the hyperthermophilic archaeon Aeropyrum pernix (5'-methythioadenosine phosphorylase; ApMTAP). Thermostability studies, kinetic analysis and substrate specificities are reported. The PNPs were stable at their optimal temperatures (DgPNP, 55 °C; GtPNP, 70 °C; ApMTAP, activity rising to 99 °C). Substrate properties were investigated for natural purine nucleosides [adenosine, inosine and their C2'-deoxy counterparts (activity within 50-500 U·mg(-1))], analogues with 2'-amino modified 2'-deoxy-adenosine and -inosine (within 0.1-3 U·mg(-1)) as well as 2'-deoxy-2'-fluoroadenosine (9) and its C2'-arabino diastereomer (10, within 0.01-0.03 U·mg(-1)). Our results reveal that the structure of the heterocyclic base (e.g. adenine or hypoxanthine) can play a critical role in the phosphorolysis reaction. The implications of this finding may be helpful for reaction mechanism studies or optimization of reaction conditions. Unexpectedly, the diastereomeric 2'-deoxyfluoro adenine ribo- and arabino-nucleosides displayed similar substrate properties. Moreover, cytidine and 2'-deoxycytidine were found to be moderate substrates of the prepared PNPs, with substrate activities in a range similar to those determined for 2'-deoxyfluoro adenine nucleosides 9 and 10. C2'-modified nucleosides are accepted as substrates by all recombinant enzymes studied, making these enzymes promising biocatalysts for the synthesis of modified nucleosides. Indeed, the prepared PNPs performed well in preliminary transglycosylation reactions resulting in the synthesis of 2'-deoxyfluoro adenine ribo- and arabino- nucleosides in moderate yield (24%).


Subject(s)
Deinococcus/enzymology , Geobacillus/enzymology , Purine-Nucleoside Phosphorylase/isolation & purification , Aeropyrum/enzymology , Aeropyrum/genetics , Amino Acid Sequence , Cloning, Molecular , DNA, Bacterial/genetics , Deinococcus/genetics , Deoxyadenosines/metabolism , Enzyme Activation , Enzyme Assays , Enzyme Stability , Escherichia coli/genetics , Escherichia coli/metabolism , Geobacillus/genetics , Glycosylation , Kinetics , Molecular Sequence Data , Phosphorylation , Purine Nucleosides/metabolism , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/metabolism , Pyrimidine Nucleosides/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Solubility , Substrate Specificity , Temperature
6.
Enzyme Microb Technol ; 48(6-7): 438-44, 2011 May 06.
Article in English | MEDLINE | ID: mdl-22113014

ABSTRACT

With improved enzymatic activity and easy accessibility, the recombinant purine nucleoside phosphorylase (PNPase) could be a very promising alternative for nucleoside biosynthesis. In our work, the deoD gene encoding PNPase was successfully cloned from Escherichia coli MG1665 and overexpressed in E. coli BL 21(DE3). After optimization of expression conditions including temperature, induction timing and isopropyl-thio-ß-D-galactoside (IPTG) concentration, over 70% of expressed total protein was His-tagged PNPase, in the soluble and functional form. Followed assays indicated that the recombinant enzyme exhibited similar substrate specificity and pH preference as the wild type PNPase. Furthermore, the immobilization technology was applied to develop the possible application of recombinant enzyme. Agar from four different polymer carriers was selected as a suitable matrix for whole recombinant cell entrapment. Subsequent enzyme assays, kinetic analysis and stability evaluation of free and immobilized recombinant cells were compared. The results indicated that although the immobilization process reduced the substrate affinity and catalytic efficiency of recombinant cells, it could significantly enhance the stability and reusability of these cells. Finally, the immobilized whole cell biocatalyst was applied to produce ribavirin, as a model nucleoside synthesis reaction. The obtained relative high productivity of ribavirin and quick reaction time suggested the great potential and feasibility of immobilized PNPase in efficient and valuable industrial utilizations.


Subject(s)
Cells, Immobilized , Escherichia coli Proteins/genetics , Escherichia coli/enzymology , Genes, Bacterial , Purine-Nucleoside Phosphorylase/genetics , Ribavirin/metabolism , Agar , Biocatalysis , Cloning, Molecular , Escherichia coli Proteins/isolation & purification , Escherichia coli Proteins/metabolism , Gels , Guanosine/metabolism , Hydrogen-Ion Concentration , Kinetics , Purine-Nucleoside Phosphorylase/isolation & purification , Purine-Nucleoside Phosphorylase/metabolism , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Substrate Specificity , Temperature , Triazoles/metabolism
7.
J Bacteriol ; 193(20): 5668-74, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21821769

ABSTRACT

Purine nucleoside phosphorylase (PNP) is an important enzyme in purine metabolism and cleaves purine nucleosides to their respective bases. Mycobacterial PNP is specific for 6-oxopurines and cannot account for the adenosine (Ado) cleavage activity that has been detected in M. tuberculosis and M. smegmatis cultures. In the current work, two Ado cleavage activities were identified from M. smegmatis cell extracts. The first activity was biochemically determined to be a phosphorylase that could reversibly catalyze adenosine + phosphate ↔ adenine + alpha-D-ribose-1-phosphate. Our purification scheme led to a 30-fold purification of this activity, with the removal of more than 99.9% of total protein. While Ado was the preferred substrate, inosine and guanosine were also cleaved, with 43% and 32% of the Ado activity, respectively. Our data suggest that M. smegmatis expresses two PNPs: a previously described trimeric PNP that can cleave inosine and guanosine only and a second, novel PNP (Ado-PNP) that can cleave Ado, inosine, and guanosine. Ado-PNP had an apparent K(m) (K(m) ( app)) of 98 ± 6 µM (with Ado) and a native molecular mass of 125 ± 7 kDa. The second Ado cleavage activity was identified as 5'-methylthioadenosine phosphorylase (MTAP) based on its biochemical properties and mass spectrometry analysis. Our study marks the first report of the existence of MTAP in any bacterium. Since human cells do not readily convert Ado to Ade, an understanding of the substrate preferences of these enzymes could lead to the identification of Ado analogs that could be selectively activated to toxic products in mycobacteria.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Mycobacterium smegmatis/enzymology , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/metabolism , Adenosine/analogs & derivatives , Adenosine/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Enzyme Stability , Kinetics , Molecular Sequence Data , Molecular Weight , Mycobacterium smegmatis/chemistry , Mycobacterium smegmatis/genetics , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Substrate Specificity
8.
Article in English | MEDLINE | ID: mdl-21543875

ABSTRACT

Purine nucleoside phosphorylase (PNP; EC 2.4.2.1) is a key enzyme of the purine-salvage pathway. Its ability to transfer glycosyl residues to acceptor bases is of great biotechnological interest owing to its potential application in the synthesis of nucleoside analogues used in the treatment of antiviral infections and in anticancer chemotherapy. Although hexameric PNPs are prevalent in prokaryotes, some microorganisms, such as Bacillus subtilis, present both hexameric and trimeric PNPs. The hexameric PNP from B. subtilis strain 168, named BsPNP233, was cloned, expressed and crystallized. Crystals belonging to different space groups (P32(1), P2(1)2(1)2(1), P6(3)22 and H32) were grown in distinct conditions with pH values ranging from 4.2 to 10.5. The crystals diffracted to maximum resolutions ranging from 2.65 to 1.70 Å.


Subject(s)
Bacillus subtilis/enzymology , Purine-Nucleoside Phosphorylase/chemistry , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Cloning, Molecular , Crystallization , Crystallography, X-Ray , Gene Expression , Models, Molecular , Protein Structure, Quaternary , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification
9.
FEBS J ; 277(24): 5161-73, 2010 Dec.
Article in English | MEDLINE | ID: mdl-21126315

ABSTRACT

The RNA degradosome is built on the C-terminal half of ribonuclease E (RNase E) which shows high sequence variation, even amongst closely related species. This is intriguing given its central role in RNA processing and mRNA decay. Previously, we have identified RhlB (ATP-dependent DEAD-box RNA helicase)-binding, PNPase (polynucleotide phosphorylase)-binding and enolase-binding microdomains in the C-terminal half of Vibrio angustum S14 RNase E, and have shown through two-hybrid analysis that the PNPase and enolase-binding microdomains have protein-binding function. We suggest that the RhlB-binding, enolase-binding and PNPase-binding microdomains may be interchangeable between Escherichia coli and V. angustum S14 RNase E. In this study, we used two-hybrid techniques to show that the putative RhlB-binding microdomain can bind RhlB. We then used Blue Native-PAGE, a technique commonly employed in the separation of membrane protein complexes, in a study of the first of its kind to purify and analyse the RNA degradosome. We showed that the V. angustum S14 RNA degradosome comprises at least RNase E, RhlB, enolase and PNPase. Based on the results obtained from sequence analyses, two-hybrid assays, immunoprecipitation experiments and Blue Native-PAGE separation, we present a model for the V. angustum S14 RNA degradosome. We discuss the benefits of using Blue Native-PAGE as a tool to analyse the RNA degradosome, and the implications of microdomain-mediated RNase E interaction specificity.


Subject(s)
RNA, Bacterial/chemistry , Vibrio/genetics , Amino Acid Sequence , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Electrophoresis, Polyacrylamide Gel , Endoribonucleases/metabolism , Hydrolysis , Mass Spectrometry , Molecular Sequence Data , Protein Binding , Purine-Nucleoside Phosphorylase/isolation & purification , Purine-Nucleoside Phosphorylase/metabolism , RNA, Bacterial/metabolism
10.
Extremophiles ; 14(2): 185-92, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20063024

ABSTRACT

A purine nucleoside phosphorylase from the alkaliphile Bacillus halodurans Alk36 was cloned and overexpressed in Escherichia coli. The enzyme was purified fivefold by membrane filtration and ion exchange. The purified enzyme had a V (max) of 2.03 x 10(-9) s (-1) and a K (m) of 206 microM on guanosine. The optimal pH range was between 5.7 and 8.4 with a maximum at pH 7.0. The optimal temperature for activity was 70 degrees C and the enzyme had a half life at 60 degrees C of 20.8 h.


Subject(s)
Bacillus/enzymology , Bacillus/genetics , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA Primers/genetics , DNA, Bacterial/genetics , Escherichia coli/genetics , Genes, Bacterial , Hydrogen-Ion Concentration , Kinetics , Models, Molecular , Molecular Sequence Data , Protein Structure, Tertiary , Purine-Nucleoside Phosphorylase/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Structural Homology, Protein , Thermodynamics
11.
Biochem Biophys Res Commun ; 391(2): 1203-9, 2010 Jan 08.
Article in English | MEDLINE | ID: mdl-20005207

ABSTRACT

Calf purine nucleoside phosphorylase (PNP) was overexpressed in Escherichia coli. The basic kinetic parameters of recombinant PNP were found to be similar to the values published previously for non-recombinant PNP from calf spleen. However, upon titration of the recombinant enzyme with the tight-binding multisubstrate analogue inhibitor DFPP-DG, endothermic as well as exothermic signals were obtained. This was not the case for PNP isolated from calf spleen for which only the endothermic process was observed. Further calorimetric titrations of the recombinant and non-recombinant enzyme with its potent and moderate ligands, and studied involving partial inactivation of the enzyme, lead to the conclusion that a part of the recombinant enzyme forms a complex with its product, hypoxanthine, although hypoxanthine was not present at any purification stage except for its natural occurrence in E. coli cells. Binding of hypoxanthine is accompanied with a large negative change of the free enthalpy, and therefore the replacement of this compound by DFPP-DG yields positive heat signal. Our data obtained with calf PNP indicate that similar processes--moping of ligands from the host cells--may take place in the case of other proteins with high overexpression yield.


Subject(s)
Hypoxanthine/chemistry , Purine-Nucleoside Phosphorylase/biosynthesis , Purine-Nucleoside Phosphorylase/chemistry , Recombinant Proteins/chemistry , Thermodynamics , Animals , Calorimetry , Cattle , Chromatography, Affinity , Escherichia coli/genetics , Escherichia coli/metabolism , Hypoxanthine/isolation & purification , Hypoxanthine/metabolism , Ligands , Protein Folding , Purine-Nucleoside Phosphorylase/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Spleen/enzymology
12.
FEMS Microbiol Lett ; 299(2): 232-40, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19732148

ABSTRACT

In this work, we present the construction of a metagenomic library in Escherichia coli using the pUC19 vector and environmental DNA directly isolated from Antarctic topsoil and screened for lipolytic enzymes. Unexpectedly, the screening on agar supplemented with olive oil and rhodamine B revealed one unusual pink fluorescent clone (PINKuv) out of 85 000 clones. This clone harbored a plasmid, pPINKuv, which has an insert of 8317 bp that has been completely sequenced. Further analysis of the insert showed eight ORFs. Three ORFs among these exhibited similarities to Psychrobacter arcticus genes. A nucleotide sequence designated as ORF4 encoded a protein with 93% identity to the methylthioadenosine phosphorylase of P. arcticus. This protein was responsible for the observed pink fluorescence of the PINKuv clone in the presence of rhodamine B. We found that colonies of recombinant E. coli TOP10F'/pUC19-ORF4 strain showed pink fluorescence under UV illumination on the Luria-Bertani agar supplemented with rhodamine B after culturing at 25, 30 and 37 degrees C. The same effect was achieved using other E. coli strains such as DH5alpha, LMG194, JM101 and BL21(DE3) pLysS. The results presented here will provide the basis for further studies on the use of the discovered gene as a new reporter gene for molecular biology applications.


Subject(s)
DNA/genetics , Pigments, Biological/metabolism , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/metabolism , Rhodamines/metabolism , Soil Microbiology , Antarctic Regions , DNA/chemistry , DNA/isolation & purification , Escherichia coli/genetics , Fluorescence , Molecular Sequence Data , Olive Oil , Open Reading Frames , Plant Oils/metabolism , Psychrobacter/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Sequence Analysis, DNA , Sequence Homology
13.
Protein Expr Purif ; 61(2): 122-30, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18585465

ABSTRACT

Calf PNP is a ubiquitous enzyme of the salvage metabolic pathway. The procedure for this enzyme production in large quantities is described. The coding sequence of bovine PNP was amplified from the calf spleen cDNA library and was inserted into an expression vector pET28a(+). The construct was transformed into Escherichia coli BL21(DE3) strain. The protein expression efficiencies in the presence and the absence of IPTG were compared. It was found that IPTG is not necessary for obtaining a large quantity of recombinant calf PNP: 35 mg from 1L cell culture. The enzyme was purified to 92% homogeneity by a two-step procedure consisting of gel filtration and ion exchange chromatography. The purity of recombinant enzyme is sufficient to form well diffracting single crystals. The basic kinetic parameters of recombinant PNP were determined and compared with the parameters of commercially available PNP from calf spleen. The specific activity in 50 mM phosphate buffer with inosine as a variable substrate (30.7 micromol min(-1)mg(-1)) and other kinetic parameters: Michaelis constants, maximal velocities, dissociation and inhibition constants, determined for several typical PNP ligands, are similar to the values published previously for non-recombinant calf spleen PNP. As expected for mammalian PNP, recombinant calf PNP was found to have no substrate activity vs adenosine. The overexpression and purification method of the recombinant calf PNP provides significant amounts of the enzyme, which can successfully replace the non-recombinant PNP.


Subject(s)
Gene Expression , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/isolation & purification , Animals , Cattle , Cloning, Molecular , Crystallization , DNA, Complementary/genetics , Escherichia coli/genetics , Guanine/analogs & derivatives , Guanine/chemistry , Hypoxanthine/chemistry , Inosine/chemistry , Kinetics , Mass Spectrometry , Phosphates/chemistry , Phosphates/metabolism , Polymerase Chain Reaction/methods , Purine-Nucleoside Phosphorylase/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Substrate Specificity
14.
Protein Expr Purif ; 59(2): 334-41, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18396409

ABSTRACT

A secreted, soluble variant of the Kex-1 endopeptidase from Kluyveromyces lactis has been produced and studied as a novel cleavage enzyme exhibiting high specificity for the Lys-Arg peptide. This highly selective, efficient enzyme is particularly adapted for use in manufacturing when a recombinant therapeutic protein, possessing its native N-terminus, has to be released in vitro from a bacterially-expressed fusion protein. In this paper, we describe the preparation of a Kex-1 variant using Saccharomyces cerevisiae and its application in the production of important therapeutic recombinant proteins such as human growth hormone, granulocyte colony-stimulating factor and interferon-alpha-2b.


Subject(s)
Carboxypeptidases/chemistry , Escherichia coli/genetics , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/isolation & purification , Carboxypeptidases/biosynthesis , Carboxypeptidases/isolation & purification , Fermentation , Protein Folding , Purine-Nucleoside Phosphorylase/biosynthesis , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/isolation & purification , Recombinant Fusion Proteins/chemistry , Saccharomyces cerevisiae/genetics , beta-Galactosidase/biosynthesis , beta-Galactosidase/chemistry , beta-Galactosidase/isolation & purification
15.
Extremophiles ; 12(3): 325-33, 2008 May.
Article in English | MEDLINE | ID: mdl-18299797

ABSTRACT

The gene encoding purine nucleoside phosphorylase (PNP) from the cold-adapted marine bacterium Pseudoalteromonas sp. Bsi590 was identified, cloned and expressed in Escherichia coli. The gene encodes a polypeptide of 233 amino acids with a calculated molecular weight of 25,018 Da. Pseudoalteromonas sp. Bsi590 PNP (PiPNP) shares 60% amino sequence identity and conservation of amino acid residues involved in catalysis with mesophilic Escherichia coli deoD-encoded purine nucleoside phosphorylase (EcPNP). N-terminal his-tagged PiPNP and EcPNP were purified to apparent homogeneity using Ni2+-chelating column. Compared with EcPNP, PiPNP possessed a lower temperature optimum and thermal stability. As for PNP enzymes in general, PiPNP and EcPNP displayed complicated kinetic properties; PiPNP possessed higher Km and catalytic efficiency (kcat/Km) compared to EcPNP at 37 degrees C. Substrate specificity results showed PiPNP catalyzed the phosphorolytic cleavage of 6-oxopurine and 6-aminopurine nucleosides (or 2-deoxynucleosides), and to a lesser extent purine arabinosides. PiPNP showed a better activity with inosine while no activity toward pyrimidine nucleosides. The protein conformation was analyzed by temperature perturbation difference spectrum. Results showed that PiPNP had lower conformation transition point temperature than EcPNP; phosphate buffer and KCl had significant influence on PiPNP protein conformation stability and thermostability.


Subject(s)
Bacterial Proteins/metabolism , Cloning, Molecular , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Pseudoalteromonas/enzymology , Purine-Nucleoside Phosphorylase/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Conserved Sequence , Enzyme Stability , Escherichia coli Proteins/metabolism , Kinetics , Molecular Sequence Data , Molecular Weight , Protein Conformation , Pseudoalteromonas/genetics , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Recombinant Proteins/metabolism , Sequence Analysis, Protein , Substrate Specificity , Temperature
16.
Article in English | MEDLINE | ID: mdl-18066913

ABSTRACT

Calf spleen purine nucleoside phosphorylase (PNP) is considered a model enzyme for the trimeric PNPs subfamily. PCR amplification of the calf phosphorylase from the calf spleen library, cloning, overexpression of the recombinant PNP, its enzymatic activity and interactions with typical ligands of mammalian wild type PNP are described. Relative activity of the recombinant phosphorylase versus several substrates is similar to the respective values obtained for the enzyme isolated from calf spleen. As for the nonrecombinant calf PNP, the unusual fluorescence properties of the PNP/guanine complex were observed and characterized.


Subject(s)
Purine-Nucleoside Phosphorylase/isolation & purification , Purine-Nucleoside Phosphorylase/metabolism , Animals , Cattle , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel
17.
Biochim Biophys Acta ; 1770(10): 1498-505, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17707115

ABSTRACT

Adenosine phosphorylase, a purine nucleoside phosphorylase endowed with high specificity for adenine nucleosides, was purified 117-fold from vegetative forms of Bacillus cereus. The purification procedure included ammonium sulphate fractionation, pH 4 treatment, ion exchange chromatography on DEAE-Sephacel, gel filtration on Sephacryl S-300 HR and affinity chromatography on N(6)-adenosyl agarose. The enzyme shows a good stability to both temperature and pH. It appears to be a homohexamer of 164+/-5 kDa. Kinetic characterization confirmed the specificity of this phosphorylase for 6-aminopurine nucleosides. Adenosine was the preferred substrate for nucleoside phosphorolysis (k(cat)/K(m) 2.1x10(6) s(-1) M(-1)), followed by 2'-deoxyadenosine (k(cat)/K(m) 4.2x10(5) s(-1) M(-1)). Apparently, the low specificity of adenosine phosphorylase towards 6-oxopurine nucleosides is due to a slow catalytic rate rather than to poor substrate binding.


Subject(s)
Bacillus cereus/enzymology , Purine-Nucleoside Phosphorylase/isolation & purification , Chromatography, Gel , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Kinetics , Molecular Weight , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/metabolism , Substrate Specificity
18.
FEBS J ; 272(8): 1886-99, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15819883

ABSTRACT

We report herein the first molecular characterization of 5'-deoxy-5'-methylthio-adenosine phosphorylase II from Sulfolobus solfataricus (SsMTAPII). The isolated gene of SsMTAPII was overexpressed in Escherichia coli BL21. Purified recombinant SsMTAPII is a homohexamer of 180 kDa with an extremely low Km (0.7 microm) for 5'-deoxy-5'-methylthioadenosine. The enzyme is highly thermophilic with an optimum temperature of 120 degrees C and extremely thermostable with an apparent Tm of 112 degrees C that increases in the presence of substrates. The enzyme is characterized by high kinetic stability and remarkable SDS resistance and is also resistant to guanidinium chloride-induced unfolding with a transition midpoint of 3.3 m after 22-h incubation. Limited proteolysis experiments indicated that the only one proteolytic cleavage site is localized in the C-terminal region and that the C-terminal peptide is necessary for the integrity of the active site. Moreover, the binding of 5'-deoxy-5'-methylthioadenosine induces a conformational transition that protected the enzyme against protease inactivation. By site-directed mutagenesis we demonstrated that Cys259, Cys261 and Cys262 play an important role in the enzyme stability since the mutants C259S/C261S and C262S show thermophilicity and thermostability features significantly lower than those of the wild-type enzyme. In order to get insight into the physiological role of SsMTAPII a comparative kinetic analysis with the homologous 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus (SsMTAP) was carried out. Finally, the alignment of the protein sequence of SsMTAPII with those of SsMTAP and human 5'-deoxy-5'-methylthioadenosine phosphorylase (hMTAP) shows several key residue changes that may account why SsMTAPII, unlike hMTAP, is able to recognize adenosine as substrate.


Subject(s)
Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/metabolism , Sulfolobus solfataricus/enzymology , Amino Acid Sequence , Cloning, Molecular , Enzyme Stability/genetics , Humans , Kinetics , Molecular Sequence Data , Mutation/genetics , Protein Conformation , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/isolation & purification , Sequence Alignment , Sulfolobus solfataricus/genetics , Thermodynamics
19.
Z Naturforsch C J Biosci ; 60(11-12): 927-31, 2005.
Article in English | MEDLINE | ID: mdl-16402555

ABSTRACT

The influence of phosphate, ionic strength, temperature and enzyme concentration on the oligomeric structure of calf spleen purine nucleoside phosphorylase (PNP) in solution was studied by analytical ultracentrifugation methods. Sedimentation equilibrium analysis used to directly determine the enzyme molecular mass revealed a trimeric molecule with Mr = (90.6 +/- 2.1) kDa, regardless the conditions investigated: protein concentration in the range 0.02-1.0 mg/ml, presence of up to 100 mM phosphate and up to 200 mM NaCl, temperature in the range 4-25 degrees C. The sedimentation coefficient (6.04 +/- 0.02) S, together with the diffusion coefficient (6.15 +/- 0.11) 10(-7) cm2/s, both values obtained from the classic sedimentation velocity method at 1.0 mg/ml PNP concentration in 20 mM Hepes, pH 7.0, yielded a molecular mass of (90.2 +/- 1.6) kDa as expected for the trimeric enzyme molecule. Moreover, as shown by active enzyme sedimentation, calf spleen PNP remained trimeric even at low protein concentrations (1 microg/ml). Hence in solution, similar like in the crystalline state, calf spleen PNP is a homotrimer and previous suggestions for dissociation of this enzyme into more active monomers, upon dilution of the enzyme or addition of phosphate, are incorrect.


Subject(s)
Purine-Nucleoside Phosphorylase/chemistry , Animals , Cattle , Kinetics , Macromolecular Substances , Mammals , Molecular Weight , Purine-Nucleoside Phosphorylase/isolation & purification , Purine-Nucleoside Phosphorylase/metabolism , Spleen/enzymology
20.
Eur J Biochem ; 271(23-24): 4834-44, 2004 Dec.
Article in English | MEDLINE | ID: mdl-15606771

ABSTRACT

The extremely heat-stable 5'-methylthioadenosine phosphorylase from the hyperthermophilic archaeon Pyrococcus furiosus was cloned, expressed to high levels in Escherichia coli, and purified to homogeneity by heat precipitation and affinity chromatography. The recombinant enzyme was subjected to a kinetic analysis including initial velocity and product inhibition studies. The reaction follows an ordered Bi-Bi mechanism and phosphate binding precedes nucleoside binding in the phosphorolytic direction. 5'-Methylthioadenosine phosphorylase from Pyrococcus furiosus is a hexameric protein with five cysteine residues per subunit. Analysis of the fragments obtained after digestion of the protein alkylated without previous reduction identified two intrasubunit disulfide bridges. The enzyme is very resistant to chemical denaturation and the transition midpoint for guanidinium chloride-induced unfolding was determined to be 3.0 M after 22 h incubation. This value decreases to 2.0 M in the presence of 30 mM dithiothreitol, furnishing evidence that disulfide bonds are needed for protein stability. The guanidinium chloride-induced unfolding is completely reversible as demonstrated by the analysis of the refolding process by activity assays, fluorescence measurements and SDS/PAGE. The finding of multiple disulfide bridges in 5'-methylthioadenosine phosphorylase from Pyrococcus furiosus argues strongly that disulfide bond formation may be a significant molecular strategy for stabilizing intracellular hyperthermophilic proteins.


Subject(s)
Disulfides/chemistry , Purine-Nucleoside Phosphorylase/isolation & purification , Pyrococcus furiosus/enzymology , Amino Acid Sequence , Cloning, Molecular , Enzyme Stability , Guanidine , Molecular Sequence Data , Protein Denaturation , Protein Folding , Purine-Nucleoside Phosphorylase/chemistry , Purine-Nucleoside Phosphorylase/genetics , Purine-Nucleoside Phosphorylase/metabolism , Sequence Homology, Amino Acid , Spectrometry, Fluorescence
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