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1.
Am J Physiol Cell Physiol ; 325(3): C758-C769, 2023 09 01.
Article in English | MEDLINE | ID: mdl-37519229

ABSTRACT

This study investigated the effect of the bacterial endotoxin lipopolysaccharide (LPS) on colonic uptake of thiamin pyrophosphate (TPP), the biologically active form of vitamin B1 that is generated by gut microbiota. We used three complementary models in our study: in vitro (human-derived colonic epithelial NCM460), ex vivo (human differentiated colonoid monolayers), and in vivo (mouse colonic tissue). The results showed that exposure of NCM460 cells to LPS leads to a significant inhibition of carrier-mediated TPP uptake as well as in decreased expression of the colonic TPP transporter (cTPPT) protein, mRNA, and heterologous nuclear RNA (hnRNA) compared with untreated controls. Similarly, exposure of human differentiated colonoid monolayers and mice to LPS caused significant inhibition in colonic carrier-mediated TPP uptake and in cTPPT protein, mRNA, and hnRNA expression. The effect of LPS on colonic TPP uptake and cTTPT expression was also found to be associated with a significant reduction in activity of the SLC44A4 promoter as well as in decreased expression of the nuclear factor Elf-3 (E74-like ETS transcription factor 3), which is needed for promoter activity. Finally, we found that knocking down the Toll-like receptor 4 (TLR4) and blocking the nuclear factor kappa B (NF-κB), JNK, and p38 signaling pathways with the use of pharmacological inhibitors lead to significant abrogation in the degree of LPS-mediated inhibition in TPP uptake and cTPPT expression. These results demonstrated that exposure of colonic epithelia to LPS inhibits colonic TPP uptake via transcriptional mechanism(s) and that the effect is mediated via TLR4 receptor and NF-κB/p38/JNK signaling pathways.NEW & NOTEWORTHY This study examined the effect of the bacterial lipopolysaccharide (LPS) on the colonic uptake of thiamin pyrophosphate (TPP), the biologically active form of vitamin B1. Three complementary models were used: in vitro (human NCM460 cells), ex vivo (human colonoids), and in vivo (mice). The results showed LPS to significantly suppress TPP uptake and the expression of its transporter, and that these effects are mediated via the membrane TLR4 receptor, and involve the NF-κB/p38/JNK signaling pathways.


Subject(s)
NF-kappa B , Thiamine Pyrophosphate , Humans , Mice , Animals , Thiamine Pyrophosphate/metabolism , NF-kappa B/metabolism , Toll-Like Receptor 4/genetics , Toll-Like Receptor 4/metabolism , Lipopolysaccharides/pharmacology , Diphosphates , MAP Kinase Signaling System , RNA, Heterogeneous Nuclear/metabolism , Cell Line , Thiamine/metabolism , RNA, Messenger/metabolism
2.
Am J Physiol Cell Physiol ; 311(1): C129-35, 2016 07 01.
Article in English | MEDLINE | ID: mdl-27122159

ABSTRACT

Vitamin C (ascorbic acid, AA) is indispensable for normal metabolism of all mammalian cells including pancreatic acinar cells (PACs). PACs obtain AA from their surroundings via transport across the cell membrane. Chronic alcohol exposure negatively affects body AA homeostasis; it also inhibits uptake of other micronutrients into PACs, but its effect on AA uptake is not clear. We examined this issue using both in vitro (266-6 cells) and in vivo (mice) models of chronic alcohol exposure. First, we determined the relative expression of the AA transporters 1 and 2 [i.e., sodium-dependent vitamin C transporter-1 (SVCT-1) and SVCT-2] in mouse and human PACs and found SVCT-2 to be the predominant transporter. Chronic exposure of 266-6 cells to alcohol significantly inhibited AA uptake and caused a marked reduction in SVCT-2 expression at the protein, mRNA, and heterogeneous nuclear RNA (hnRNA) levels. Similarly, chronic alcohol feeding of mice significantly inhibited AA uptake and caused a marked reduction in level of expression of the SVCT-2 protein, mRNA, and hnRNA. These findings suggest possible involvement of transcriptional mechanism(s) in mediating chronic alcohol effect on AA uptake by PACs. We also observed significant epigenetic changes (histone modifications) in the Slc23a2 gene (reduction in H3K4me3 level and an increase in H3K27me3 level) in the alcohol-exposed 266-6 cells. These findings show that chronic alcohol exposure inhibits PAC AA uptake and that the effect is mediated, in part, at the level of transcription of the Slc23a2 gene and may involve epigenetic mechanism(s).


Subject(s)
Alcohol Drinking/adverse effects , Ascorbic Acid/metabolism , Ethanol/toxicity , Pancreas, Exocrine/drug effects , Sodium-Coupled Vitamin C Transporters/metabolism , Alcohol Drinking/metabolism , Animals , Biological Transport , Cell Line, Tumor , Down-Regulation , Epigenesis, Genetic , Humans , Mice , Models, Animal , Pancreas, Exocrine/metabolism , Pancreas, Exocrine/pathology , RNA, Heterogeneous Nuclear/genetics , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Sodium-Coupled Vitamin C Transporters/genetics , Transcription, Genetic
4.
Mol Cell ; 51(3): 338-48, 2013 Aug 08.
Article in English | MEDLINE | ID: mdl-23891561

ABSTRACT

During meiosis in yeast, global splicing efficiency increases and then decreases. Here we provide evidence that splicing improves due to reduced competition for the splicing machinery. The timing of this regulation corresponds to repression and reactivation of ribosomal protein genes (RPGs) during meiosis. In vegetative cells, RPG repression by rapamycin treatment also increases splicing efficiency. Downregulation of the RPG-dedicated transcription factor gene IFH1 genetically suppresses two spliceosome mutations, prp11-1 and prp4-1, and globally restores splicing efficiency in prp4-1 cells. We conclude that the splicing apparatus is limiting and that pre-messenger RNAs compete. Splicing efficiency of a pre-mRNA therefore depends not just on its own concentration and affinity for limiting splicing factor(s), but also on those of competing pre-mRNAs. Competition between RNAs for limiting processing factors appears to be a general condition in eukaryotes for a variety of posttranscriptional control mechanisms including microRNA (miRNA) repression, polyadenylation, and splicing.


Subject(s)
Meiosis/genetics , RNA Precursors/genetics , RNA Precursors/metabolism , RNA Splicing , Saccharomyces cerevisiae/genetics , Base Sequence , Down-Regulation , Protein Serine-Threonine Kinases/genetics , RNA Splicing Factors , RNA, Fungal/genetics , RNA, Fungal/metabolism , RNA, Heterogeneous Nuclear/genetics , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA-Binding Proteins/genetics , Ribonucleoprotein, U4-U6 Small Nuclear/genetics , Ribosomal Proteins/biosynthesis , Ribosomal Proteins/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/biosynthesis , Saccharomyces cerevisiae Proteins/genetics , Sequence Analysis, RNA , Sirolimus/pharmacology , Spliceosomes/genetics , Trans-Activators/biosynthesis , Transcription, Genetic
5.
Invest Ophthalmol Vis Sci ; 54(1): 697-707, 2013 Jan 23.
Article in English | MEDLINE | ID: mdl-23299472

ABSTRACT

PURPOSE: We investigated the impact of PININ (PNN) and epithelial splicing regulatory protein 1 (ESRP1) on alternative pre-mRNA splicing in the corneal epithelial context. METHODS: Isoform-specific RT-PCR assays were performed on wild-type and Pnn knockout mouse cornea. Protein interactions were examined by deconvolution microscopy and co-immunoprecipitation. For genome-wide alternative splicing study, immortalized human corneal epithelial cells (HCET) harboring doxycycline-inducible shRNA against PNN or ESRP1 were created. Total RNA was isolated from four biological replicates of control and knockdown HCET cells, and subjected to hGlue3_0 transcriptome array analysis. RESULTS: Pnn depletion in developing mouse corneal epithelium led to disrupted alternative splicing of multiple ESRP-regulated epithelial-type exons. In HCET cells, ESRP1 and PNN displayed close localization in and around nuclear speckles, and their physical association in protein complexes was identified. Whole transcriptome array analysis on ESRP1 or PNN knockdown HCET cells revealed clear alterations in transcript profiles and splicing patterns of specific subsets of genes. Separate RT-PCR validation assays confirmed successfully specific changes in exon usage of several representative splice variants, including PAX6(5a), FOXJ3, ARHGEF11, and SLC37A2. Gene ontologic analyses on ESRP1- or PNN-regulated alternative exons suggested their roles in epithelial phenotypes, such as cell morphology and movement. CONCLUSIONS: Our data suggested that ESRP1 and PNN modulate alternative splicing of a specific subset of target genes, but not general splicing events, in HCET cells to maintain or enhance epithelial characteristics.


Subject(s)
Alternative Splicing , Cell Adhesion Molecules/genetics , Epithelium, Corneal/metabolism , Gene Expression Regulation , Nuclear Proteins/genetics , RNA Precursors/genetics , RNA, Heterogeneous Nuclear/genetics , RNA-Binding Proteins/genetics , Animals , Cell Adhesion Molecules/metabolism , Cells, Cultured , Epithelium, Corneal/cytology , Exons , Gene Expression Profiling , Humans , Immunoblotting , Mice , Mice, Knockout , Microscopy, Fluorescence , Mutation , Nuclear Proteins/metabolism , RNA Precursors/metabolism , RNA, Heterogeneous Nuclear/metabolism , RNA-Binding Proteins/metabolism , Reverse Transcriptase Polymerase Chain Reaction
6.
RNA ; 19(3): 380-9, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23335637

ABSTRACT

Alternative splicing (AS) is a major contributor to proteome diversity, but it also regulates gene expression by introducing premature termination codons (PTCs) that destabilize transcripts, typically via the nonsense-mediated decay (NMD) pathway. Such AS events often take place within long, conserved sequence elements, particularly in genes encoding various RNA binding proteins. AS-NMD is often activated by the protein encoded by the same gene, leading to a self-regulating feedback loop that maintains constant protein levels. However, cross-regulation between different RNA binding proteins is also common, giving rise to finely tuned regulatory networks. Recently, we described a feedback mechanism regulating two protein components of the U12-dependent spliceosome (U11-48K and U11/U12-65K) through a highly conserved sequence element. These elements contain a U11 snRNP-binding splicing enhancer (USSE), which, through the U11 snRNP, activates an upstream U2-type 3'ss, resulting in the degradation of the U11-48K mRNA by AS-NMD. Through phylogenetic analysis, we now identify a G-rich sequence element that is conserved in fishes as well as mammals. We show that this element binds hnRNPF/H proteins in vitro. Knockdown of hnRNPH1/H2 or mutations in the G-run both lead to enhanced activation of the 3'ss in vivo, suggesting that hnRNPH1/H2 proteins counteract the 3'ss activation. Furthermore, we provide evidence that U1 binding immediately downstream from the G-run similarly counteracts the U11-mediated activation of the alternative 3'ss. Thus, our results elucidate the mechanism in which snRNPs from both spliceosomes together with hnRNPH1/H2 proteins regulate the recognition and activation of the highly conserved alternative splice sites within the U11-48K pre-mRNA.


Subject(s)
RNA Precursors/metabolism , RNA Stability , RNA, Heterogeneous Nuclear/metabolism , Ribonucleoprotein, U1 Small Nuclear/metabolism , Ribonucleoproteins, Small Nuclear/metabolism , Amino Acid Sequence , Animals , Binding Sites , HEK293 Cells , HeLa Cells , Humans , RNA Splicing , Ribonucleoprotein, U1 Small Nuclear/chemistry , Ribonucleoproteins, Small Nuclear/genetics , Spliceosomes/metabolism
7.
Hum Mol Genet ; 21(R1): R90-6, 2012 Oct 15.
Article in English | MEDLINE | ID: mdl-22936691

ABSTRACT

New data are revealing a complex landscape of gene regulation shaped by chromatin states that extend into the bodies of transcribed genes and associate with distinct RNA elements such as exons, introns and polyadenylation sites. Exons are characterized by increased levels of nucleosome positioning, DNA methylation and certain histone modifications. As pre-mRNA splicing occurs co-transcriptionally, changes in the transcription elongation rate or epigenetic marks can influence exon splicing. These new discoveries broaden our understanding of the epigenetic code and ascribe a novel role for chromatin in controlling pre-mRNA processing. In this review, we summarize the recently discovered interplay between the modulation of chromatin states and pre-mRNA processing with the particular focus on how these processes communicate with one another to control gene expression.


Subject(s)
Chromatin/genetics , Epigenesis, Genetic , RNA Precursors/genetics , RNA Splicing , RNA, Messenger/genetics , Chromatin Assembly and Disassembly , DNA Methylation , Exons/genetics , Gene Expression Regulation , Histones/metabolism , Humans , RNA Precursors/metabolism , RNA, Heterogeneous Nuclear/genetics , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Transcription, Genetic
8.
RNA ; 17(6): 1132-47, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21525146

ABSTRACT

Metazoan replication-dependent histone mRNAs are the only nonpolyadenylated cellular mRNAs. Formation of the histone mRNA 3' end requires the U7 snRNP, which contains Lsm10 and Lsm11, and FLASH, a processing factor that binds Lsm11. Here, we identify sequences in Drosophila FLASH (dFLASH) that bind Drosophila Lsm11 (dLsm11), allow localization of dFLASH to the nucleus and histone locus body (HLB), and participate in histone pre-mRNA processing in vivo. Amino acids 105-154 of dFLASH bind to amino acids 1-78 of dLsm11. A two-amino acid mutation of dLsm11 that prevents dFLASH binding but does not affect localization of U7 snRNP to the HLB cannot rescue the lethality or histone pre-mRNA processing defects resulting from an Lsm11 null mutation. The last 45 amino acids of FLASH are required for efficient localization to the HLB in Drosophila cultured cells. Removing the first 64 amino acids of FLASH has no effect on processing in vivo. Removal of 13 additional amino acids of dFLASH results in a dominant negative protein that binds Lsm11 but inhibits processing of histone pre-mRNA in vivo. Inhibition requires the Lsm11 binding site, suggesting that the mutant dFLASH protein sequesters the U7 snRNP in an inactive complex and that residues between 64 and 77 of dFLASH interact with a factor required for processing. Together, these studies demonstrate that direct interaction between dFLASH and dLsm11 is essential for histone pre-mRNA processing in vivo and for proper development and viability in flies.


Subject(s)
Carrier Proteins/chemistry , Carrier Proteins/metabolism , Drosophila Proteins/chemistry , Drosophila Proteins/metabolism , Drosophila/genetics , Histones/genetics , RNA Precursors/metabolism , RNA, Messenger/metabolism , Ribonucleoproteins, Small Nuclear/chemistry , Ribonucleoproteins, Small Nuclear/metabolism , Animals , Binding Sites , Carrier Proteins/genetics , Cells, Cultured , Drosophila/metabolism , Drosophila Proteins/genetics , Histones/metabolism , RNA Processing, Post-Transcriptional , RNA, Heterogeneous Nuclear/genetics , RNA, Heterogeneous Nuclear/metabolism , Ribonucleoprotein, U7 Small Nuclear/genetics , Ribonucleoprotein, U7 Small Nuclear/metabolism , Ribonucleoproteins, Small Nuclear/genetics
9.
RNA ; 16(8): 1449-62, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20584894

ABSTRACT

Heterogeneous nuclear ribonucleoproteins (hnRNPs) comprise a family of RNA-binding proteins. The complexity and diversity associated with the hnRNPs render them multifunctional, involved not only in processing heterogeneous nuclear RNAs (hnRNAs) into mature mRNAs, but also acting as trans-factors in regulating gene expression. Heterogeneous nuclear ribonucleoprotein E1 (hnRNP E1), a subgroup of hnRNPs, is a KH-triple repeat containing RNA-binding protein. It is encoded by an intronless gene arising from hnRNP E2 through a retrotransposition event. hnRNP E1 is ubiquitously expressed and functions in regulating major steps of gene expression, including pre-mRNA processing, mRNA stability, and translation. Given its wide-ranging functions in the nucleus and cytoplasm and interaction with multiple proteins, we propose a post-transcriptional regulon model that explains hnRNP E1's widespread functional diversity.


Subject(s)
Heterogeneous-Nuclear Ribonucleoproteins/metabolism , RNA, Heterogeneous Nuclear/metabolism , RNA-Binding Proteins/metabolism , Cell Nucleus/metabolism , Cytoplasm/metabolism , Humans , RNA Precursors/metabolism , RNA, Messenger/metabolism
10.
Am J Physiol Renal Physiol ; 299(1): F28-34, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20427470

ABSTRACT

The renal thiamin reabsorption process plays an important role in regulating thiamin body homeostasis and involves both thiamin transporters-1 and -2 (THTR1 and THTR2). Chronic alcohol use is associated with thiamin deficiency. Although a variety of factors contribute to the development of this deficiency, effects of chronic alcohol use on renal thiamin transport have not been thoroughly examined. We addressed this issue by examining the effect of chronic alcohol feeding of rats with liquid diet on physiological and molecular parameters of renal thiamin transport. Chronic alcohol feeding caused a significant inhibition in carrier-mediated thiamin transport across the renal brush-border membrane and was evident as early as 2 wk after initiation of alcohol feeding. Similarly, thiamin transport across the renal basolateral membrane was significantly inhibited by chronic alcohol feeding. The inhibition in renal thiamin transport was associated with a marked decrease in the level of expression of THTR1 and -2 proteins, mRNAs, and heterogeneous nuclear RNAs. Chronic alcohol feeding also caused a significant reduction in the level of expression of thiamin pyrophosphokinase but not that of the mitochondrial thiamin pyrophosphate transporter. These studies show that chronic alcohol feeding inhibits the entry and exit of thiamin in the polarized renal epithelial cells and that the effect is, at least in part, mediated at the transcriptional level. These findings also suggest that chronic alcohol feeding interferes with the normal homeostasis of thiamin in renal epithelial cells.


Subject(s)
Alcohol Drinking/adverse effects , Central Nervous System Depressants/toxicity , Epithelial Cells/drug effects , Ethanol/toxicity , Kidney/drug effects , Membrane Transport Proteins/metabolism , Thiamine Deficiency/metabolism , Thiamine/metabolism , Animals , Biological Transport , Cell Polarity , Down-Regulation , Epithelial Cells/metabolism , Homeostasis , Kidney/metabolism , Male , Membrane Transport Proteins/genetics , Microvilli/metabolism , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Rats , Rats, Wistar , Thiamin Pyrophosphokinase/metabolism , Thiamine Deficiency/etiology , Thiamine Deficiency/genetics , Time Factors , Transcription, Genetic
11.
BMC Evol Biol ; 9: 219, 2009 Sep 02.
Article in English | MEDLINE | ID: mdl-19725974

ABSTRACT

BACKGROUND: In the Duplication-Degeneration-Complementation (DDC) model, subfunctionalization and neofunctionalization have been proposed as important processes driving the retention of duplicated genes in the genome. These processes are thought to occur by gain or loss of regulatory elements in the promoters of duplicated genes. We tested the DDC model by determining the transcriptional induction of fatty acid-binding proteins (Fabps) genes by dietary fatty acids (FAs) in zebrafish. We chose zebrafish for this study for two reasons: extensive bioinformatics resources are available for zebrafish at zfin.org and zebrafish contains many duplicated genes owing to a whole genome duplication event that occurred early in the ray-finned fish lineage approximately 230-400 million years ago. Adult zebrafish were fed diets containing either fish oil (12% lipid, rich in highly unsaturated fatty acid), sunflower oil (12% lipid, rich in linoleic acid), linseed oil (12% lipid, rich in linolenic acid), or low fat (4% lipid, low fat diet) for 10 weeks. FA profiles and the steady-state levels of fabp mRNA and heterogeneous nuclear RNA in intestine, liver, muscle and brain of zebrafish were determined. RESULT: FA profiles assayed by gas chromatography differed in the intestine, brain, muscle and liver depending on diet. The steady-state level of mRNA for three sets of duplicated genes, fabp1a/fabp1b.1/fabp1b.2, fabp7a/fabp7b, and fabp11a/fabp11b, was determined by reverse transcription, quantitative polymerase chain reaction (RT-qPCR). In brain, the steady-state level of fabp7b mRNAs was induced in fish fed the linoleic acid-rich diet; in intestine, the transcript level of fabp1b.1 and fabp7b were elevated in fish fed the linolenic acid-rich diet; in liver, the level of fabp7a mRNAs was elevated in fish fed the low fat diet; and in muscle, the level of fabp7a and fabp11a mRNAs were elevated in fish fed the linolenic acid-rich or the low fat diets. In all cases, induction of the steady-state level of fabp mRNAs by dietary FAs correlated with induced levels of hnRNA for a given fabp gene. As such, up-regulation of the steady-state level of fabp mRNAs by FAs occurred at the level of initiation of transcription. None of the sister duplicates of these fabp genes exhibited an increase in their steady-state transcript levels in a specific tissue following feeding zebrafish any of the four experimental diets. CONCLUSION: Differential induction of only one of the sister pair of duplicated fabp genes by FAs provides evidence to support the DDC model for retention of duplicated genes in the zebrafish genome by either subfunctionalization or neofunctionalization.


Subject(s)
Fatty Acid-Binding Proteins/genetics , Fatty Acids/metabolism , Zebrafish Proteins/genetics , Zebrafish/genetics , Animals , Diet , Fatty Acid-Binding Proteins/metabolism , Female , Gene Expression Regulation, Developmental , Male , Promoter Regions, Genetic , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Transcription, Genetic , Zebrafish Proteins/metabolism
12.
Stress ; 12(5): 400-11, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19065454

ABSTRACT

Although previous studies have examined the extent to which adrenocorticotropic hormone (ACTH) secretion depends on endogenous glucocorticoid levels, few have examined the parallel glucocorticoid dependency of gene expression within the corticotropin releasing hormone (CRH) neuron containing subregion of the hypothalamic paraventricular nucleus (PVN). This study examined resting and stress-induced expression of three immediate early genes (c-fos, zif268, and NGFI-B mRNAs) and two phenotypic restricted immediate early genes that code for ACTH secretagogues (CRH and arginine vasopressin [AVP] hnRNAs) in the PVN of adrenalectomized (ADX) rats given either 0.9% saline to drink for 5 days or saline with corticosterone (CORT; 25 microg/ml). CORT-containing saline was replaced with saline 18 h before testing to ensure clearance of CORT at the time of testing. Dependent measures were examined 0, 15, 30, 60, or 120 min after 30 min restraint. Compared to sham surgery, ADX produced a large upregulation of basal ACTH secretion but only a trend for an increase in basal PVN CRH and parvocellular (mp) PVN AVP hnRNA expression, and a marked augmentation of restraint-induced ACTH secretion and the expression of all five genes examined. CORT containing saline partially normalized basal and restraint-induced ACTH secretion and restraint-induced AVP hnRNA, c-fos mRNA, and zif268 mRNA in the PVN in ADX rats. In contrast, expression patterns of restraint-induced PVN CRH hnRNA and NGFI-B mRNA were not different between ADX rats with or without CORT replacement. Given that there was no circulating CORT present at the time of restraint challenge in either group of ADX rats, the differential impact of CORT replacement on restraint-induced PVN gene expression must reflect differential dependency of the expression of these genes in the PVN on the prior presence of CORT.


Subject(s)
Adrenocorticotropic Hormone/metabolism , Glucocorticoids/physiology , Paraventricular Hypothalamic Nucleus/metabolism , Stress, Physiological/physiology , Adrenalectomy , Adrenocorticotropic Hormone/physiology , Animals , Early Growth Response Protein 1/metabolism , Male , Nuclear Receptor Subfamily 4, Group A, Member 1/metabolism , Paraventricular Hypothalamic Nucleus/drug effects , Proto-Oncogene Proteins c-fos/metabolism , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley , Restraint, Physical/physiology , Stress, Psychological/physiopathology
13.
Brain Res ; 1250: 27-40, 2009 Jan 23.
Article in English | MEDLINE | ID: mdl-19027722

ABSTRACT

Neurofilaments (NFs), which comprise one of three cytoskeletal polymers of vertebrate axons, are heteropolymers of multiple NF subunit proteins. During Xenopus laevis optic nerve regeneration, NF subunit composition undergoes progressive changes that correlate with regenerative success. Understanding the relative contributions of transcriptional and post-transcriptional gene regulatory mechanisms to these changes should therefore provide insights into the control of the axonal growth program. Previously, we examined this issue with respect to the medium neurofilament protein (NF-M). Because the integrity of NF heteropolymers depends upon maintaining properly balanced expression among multiple subunits, we have now extended this analysis to include the four light NF subunits - peripherin, the light NF triplet protein (NF-L), and two additional alpha-internexin-like proteins. Within 3 days after an optic nerve crush injury to one eye, primary transcript levels of NF subunits increased in both eyes. Levels of mRNA, however, increased in only the operated eye and did so later than did increases in primary transcript, indicating that mRNA levels are under significant post-transcriptional regulation. As measured by polysome profiling, the translational efficiencies of individual NF subunit mRNAs also shifted throughout regeneration, with operated eye mRNAs being generally more translationally active than those of unoperated eyes. Also, in operated eyes, the precise mix of efficiently and poorly translated messages throughout regeneration varied independently for each subunit, indicating that their translations are fine-tuned separately. These results suggest a model whereby traumatic disruption of visual circuitry leads to increased expression of NF primary transcripts in both eyes. These increases are subsequently modulated post-transcriptionally to accommodate shifting demands at each phase of regeneration for NF heteropolymers of differing composition in regrowing axons.


Subject(s)
Nerve Regeneration/physiology , Neurofilament Proteins/metabolism , Optic Nerve/physiology , RNA/metabolism , Retinal Ganglion Cells/metabolism , Xenopus Proteins/metabolism , Animals , Intermediate Filament Proteins/metabolism , Membrane Glycoproteins/metabolism , Nerve Crush , Nerve Tissue Proteins/metabolism , Neurofilament Proteins/genetics , Optic Nerve Injuries/metabolism , Peripherins , Polyribosomes/metabolism , RNA Processing, Post-Transcriptional , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Xenopus laevis
14.
Anal Bioanal Chem ; 392(6): 1109-22, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18762920

ABSTRACT

The scattered and limited data on hnRNAs (pre-mRNAs) of cytochromes P450 (CYP) are compiled and discussed for the first time. The methods for determination and quantification of hnRNAs are compared. In most cases, CYP hnRNA levels were determined as a parameter of transcriptional activity. It is known, however, that some CYPs, in particular CYP2E1, are in addition specifically and extensively regulated by post-transcriptional processes. Obviously, these processes also influence the processing of CYP hnRNAs so that their levels cannot be considered a mere result of transcription. The underlying mechanisms of post-transcriptional CYP hnRNA and mRNA regulation are not well understood. It is our aim therefore to bring together available data on CYP hnRNA and to discuss them in the light of recent advances in knowledge concerning pre-mRNA processing and interactions between RNA and low molecular weight interfering RNAs. By doing this, we hope to drive research in a direction which appears promising in providing some long-awaited answers with respect to mechanisms of post-transcriptional CYP regulation.


Subject(s)
Cytochrome P-450 Enzyme System/metabolism , RNA Precursors/metabolism , RNA Processing, Post-Transcriptional/physiology , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Transcription, Genetic/physiology , Animals , Cytochrome P-450 Enzyme System/genetics , Humans , Organ Specificity , Polymerase Chain Reaction , RNA Precursors/genetics , RNA Processing, Post-Transcriptional/genetics , RNA, Heterogeneous Nuclear/genetics , RNA, Messenger/genetics , Transcription, Genetic/genetics
15.
Stress ; 11(4): 302-11, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18574790

ABSTRACT

Regulation of the production of hypothalamic-pituitary-adrenal (HPA) axis secretagogues, corticotropin-releasing hormone (CRH) and arginine vasopressin (AVP), may be differentially sensitive to the negative feedback effects of glucocorticoids. We chose to study this phenomenon by examining the ability of dexamethasone to influence CRH and AVP heteronuclear RNA (hnRNA) levels in an escapable/inescapable (ES/IS) foot-shock stress paradigm. On Day 1, adult male rats were subjected to either ES or IS foot-shock; on Day 2, saline or dexamethasone (100 microg/kg) was administered 2 h prior to the stressor. We found that ES/IS foot-shock stimulated similar robust increases in plasma adrenocorticotrophic hormone (ACTH) and corticosterone concentrations, and medial parvocellular division of the paraventricular nucleus (mpPVN) AVP and CRH hnRNA and c-fos mRNA levels in saline-treated ES/IS rats. Dexamethasone pretreatment suppressed ACTH and corticosterone levels similarly in IS and ES animals. Dexamethasone pretreatment also suppressed mpPVN CRH and AVP hnRNA levels at 30 min. However, by 120 min, the mpPVN AVP hnRNA levels in dexamethasone-treated rats were similar to those measured in the saline group. We also found that rats that received the most shocks on Day 1 had greater HPA axis activation on Day 2. We conclude that the magnitude of the foot-shock stressor, determined by learned and immediate cues, is important in determining the magnitude of the HPA response.


Subject(s)
Arginine Vasopressin/biosynthesis , Corticotropin-Releasing Hormone/biosynthesis , Dexamethasone/pharmacology , Hypothalamo-Hypophyseal System/physiopathology , Pituitary-Adrenal System/physiopathology , Stress, Physiological/physiopathology , Adrenocorticotropic Hormone/metabolism , Animals , Corticosterone/metabolism , Electric Stimulation , Male , Paraventricular Hypothalamic Nucleus/physiopathology , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley , Transcription, Genetic
16.
J Neuroendocrinol ; 20(2): 227-32, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18088359

ABSTRACT

Previous studies have shown that the secretion of oxytocin and vasopressin from the posterior pituitary always accompanies systemic hyperosmotic stimuli in rats, and that oxytocin and vasopressin mRNAs consistently increase in response to prolonged hyperosmotic stimuli. Hence, it has been widely interpreted that oxytocin and vasopressin secretion and gene expression are closely coupled. In the present study, we used both vasopressin and oxytocin intron- specific probes to measure vasopressin and oxytocin heteronuclear RNA (hnRNA) levels, respectively, by in situ hybridisation in the rat supraoptic nucleus (SON) in conjunction with radioimmunoassays of vasopressin and oxytocin peptide levels in plasma and in the posterior pituitary in normally hydrated rats and after 1-5 days of salt loading. Increased oxytocin secretion in response to hyperosmotic stimuli exceeded vasopressin secretion at every time point studied. Vasopressin hnRNA in the SON increased to near maximal levels within minutes after the hyperosmotic stimulus, and was maintained throughout all 5 days of salt loading. By contrast, oxytocin hnRNA did not significantly change from control levels until approximately 2 days after hyperosmotic stimulation, and was not maximal until 3 days. In summary, increases in oxytocin gene transcription in response to osmotic stimuli are dramatically delayed compared to increases in vasopressin gene transcription under the same conditions. These data indicate that oxytocin gene transcription is not as closely correlated with pituitary peptide secretion as is vasopressin gene transcription, and suggests that there is a fundamental difference in excitation-secretion-transcription coupling mechanisms that regulate these two closely related genes in the rat magnocellular neurones in the SON.


Subject(s)
Oxytocin/genetics , RNA, Heterogeneous Nuclear/metabolism , Sodium Chloride/administration & dosage , Supraoptic Nucleus/drug effects , Supraoptic Nucleus/metabolism , Vasopressins/genetics , Animals , Blood , Drug Administration Schedule , Gene Expression/drug effects , In Situ Hybridization , Kinetics , Male , Osmolar Concentration , Pituitary Gland, Posterior/drug effects , Pituitary Gland, Posterior/metabolism , Radioimmunoassay , Rats , Rats, Sprague-Dawley , Sodium Chloride/pharmacology , Time Factors
17.
Front Biosci ; 13: 1090-105, 2008 Jan 01.
Article in English | MEDLINE | ID: mdl-17981615

ABSTRACT

Splicing requires the accurate recognition of exonic sequences from the surrounding thousands of nucleotides of intronic sequence and is achieved by the coordinate interplay of splicing regulatory elements in genes and the trans-acting RNA and protein molecules to which they bind. Infidelity in this process can have dramatic consequences for protein production, with an errors resulting in mRNA instability or the production of aberrant protein products. It is therefore not surprising that disruptions of splicing processes have been associated with a wide range of diseases, including cancer. This review looks at some of the mechanisms that regulate splicing and how disruption of such mechanisms can contribute to cancer susceptibility and progression.


Subject(s)
Gene Expression Regulation, Neoplastic , Gene Expression Regulation , Mutation , RNA Splicing , RNA, Messenger/metabolism , Alternative Splicing , Biomarkers, Tumor , Cell Line, Tumor , Exons , Heterogeneous-Nuclear Ribonucleoproteins/metabolism , Humans , Models, Biological , Protein Isoforms , RNA, Heterogeneous Nuclear/metabolism , Spliceosomes/metabolism
18.
Neurosci Lett ; 425(2): 99-104, 2007 Sep 25.
Article in English | MEDLINE | ID: mdl-17826907

ABSTRACT

The neuropeptides, arginine vasopressin (AVP) and vasoactive intestinal polypeptide (VIP) are synthesized by neurons of the suprachiasmatic nucleus (SCN) of the hypothalamus and are important regulators of SCN function. Previous studies have demonstrated that acute exposure to stressors can disrupt circadian activity rhythms, suggesting the possibility of stress-related alterations in the expression of these neuropeptides within SCN neurons. In this study, we examined the effect of intermittent footshock stress on AVP mRNA and heterogeneous nuclear RNA (hnRNA) and VIP mRNA expression in neurons of the SCN. Young adult male Sprague/Dawley rats were subjected to 15 s of scrambled intermittent footshock (0.50 mA pulses, 1 pulse/s, 300 ms duration) every 5 min for 30 min. Animals were sacrificed 75 or 135 min after the onset of stress and brains examined for AVP mRNA and hnRNA, and VIP mRNA using in situ hybridization. Footshock stress increased AVP hnRNA levels at the 75 min time point whereas AVP mRNA was elevated at both the 75 and 135 min time points. In contrast, footshock stress decreased the number of cells expressing VIP mRNA in the SCN without changing hybridization level per cell. These data indicate that the disruptive effect of stress on activity rhythms correlate with alterations in the expression of regulatory peptides within the SCN.


Subject(s)
Arginine Vasopressin/genetics , Chronobiology Disorders/metabolism , Circadian Rhythm/genetics , Stress, Psychological/metabolism , Suprachiasmatic Nucleus/metabolism , Vasoactive Intestinal Peptide/genetics , Animals , Cell Count , Chronobiology Disorders/genetics , Chronobiology Disorders/physiopathology , Down-Regulation/genetics , Electric Stimulation/adverse effects , Hypothalamus, Anterior/metabolism , Image Processing, Computer-Assisted , In Situ Hybridization , Male , Paraventricular Hypothalamic Nucleus/metabolism , RNA, Heterogeneous Nuclear/analysis , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/analysis , RNA, Messenger/metabolism , Rats , Rats, Sprague-Dawley , Stress, Psychological/physiopathology , Suprachiasmatic Nucleus/physiopathology , Time Factors , Up-Regulation/genetics
19.
Brain Res Bull ; 74(1-3): 142-6, 2007 Sep 14.
Article in English | MEDLINE | ID: mdl-17683800

ABSTRACT

Thyroid-stimulating hormone (TSH) stimulates the synthesis and release of thyroid hormones including triiodothyronine (T3) and thyroxine (T4). Semiquantitative analyses using northern blot and in situ hybridization suggested that TSH gene transcription is upregulated under conditions of hypothyroidism. However, no quantitative analysis of TSH gene expression using real-time polymerase chain reaction (PCR) has been reported. In this study, we quantitated the TSHbeta messenger ribonucleic acid (mRNA) level as well as the TSHbeta heterogeneous nuclear ribonucleic acid (hnRNA) level in the anterior pituitary of hypothyroid rats, by real-time PCR using the LightCycler system. The hnRNA is the primary deoxyribonucleic acid (DNA) transcript, which reflects the transcription rate more reliably than the mRNA because of its short half-life. In the anterior pituitary of rats with methimazol-induced chronic hypothyroidism, both mRNA and hnRNA expression of TSHbeta were upregulated fourfold relative to normal rats (n=4). Our method provides a rapid and accurate measure of gene transcription. In the present report, we described a technique for accurate measurement of TSHbeta hnRNA level.


Subject(s)
Hypothyroidism/metabolism , RNA, Heterogeneous Nuclear/metabolism , RNA, Messenger/metabolism , Thyrotropin/metabolism , Animals , Enzyme-Linked Immunosorbent Assay/methods , Gene Expression Regulation/drug effects , Gene Expression Regulation/physiology , Hypothyroidism/chemically induced , Male , Methimazole , Rats , Rats, Wistar , Reverse Transcriptase Polymerase Chain Reaction/methods , Thyrotropin/genetics , Thyroxine/blood , Triiodothyronine/blood
20.
Psychopharmacology (Berl) ; 192(3): 385-96, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17297634

ABSTRACT

RATIONALE: Corticotropin-releasing factor (CRF) is the primary physiologic regulator of the hypothalamic-pituitary-adrenal (HPA) axis and serves to globally coordinate the mammalian stress response. Hyperactivity of central nervous system CRF neurotransmission, acting primarily via the CRF(1) receptor, has been strongly implicated in the pathophysiology of depression and anxiety. Furthermore, there is evidence of enhanced CRF transcription, release, and neuronal activity after the administration of and withdrawal from several drugs of abuse, including cannabis, cocaine, ethanol, and morphine. Treatment with CRF antagonists has been demonstrated to reduce the severity of certain drug withdrawal symptoms, implicating a specific role for activation of CRF neurons in mediating the anxiogenic and stress-like reactions observed after abrupt drug discontinuation. OBJECTIVES/METHODS: To extend these findings, we investigated whether pretreatment with the selective CRF(1) receptor antagonist R121919 decreases the behavioral and neuroendocrine activation observed after the precipitation of benzodiazepine (BZ) withdrawal in BZ-dependent rats. RESULTS: Pretreatment with R121919 attenuated the subsequent HPA axis activation, behavioral measures of anxiety, and expression of the CRF gene in the paraventricular nucleus of the hypothalamus, as measured by CRF heteronuclear RNA, which occurs after flumazenil-precipitation of withdrawal from the BZ, lorazepam. CONCLUSIONS: These results indicate that the activation of CRF neuronal systems may be a common neurobiological mechanism in withdrawal from drugs of abuse and moreover, that the CRF(1) receptor subtype plays a major role in mediating the effects of CRF on neuroendocrine and behavioral responses during BZ withdrawal. Therefore, CRF(1) receptor antagonists may be of therapeutic utility in the treatment of drug withdrawal syndromes.


Subject(s)
Anti-Anxiety Agents/adverse effects , Hypnotics and Sedatives/adverse effects , Lorazepam/adverse effects , Pyrimidines/pharmacology , Receptors, Corticotropin-Releasing Hormone/antagonists & inhibitors , Substance Withdrawal Syndrome/drug therapy , Animals , Anxiety/drug therapy , Anxiety/physiopathology , Behavior, Animal/drug effects , Flumazenil , Gene Expression/drug effects , Hypothalamo-Hypophyseal System/physiopathology , Male , Neurons/metabolism , Paraventricular Hypothalamic Nucleus/metabolism , Pituitary-Adrenal System/physiopathology , RNA, Heterogeneous Nuclear/metabolism , Rats , Rats, Sprague-Dawley , Stress, Physiological/drug therapy , Stress, Physiological/physiopathology , Substance Withdrawal Syndrome/physiopathology , Substance-Related Disorders
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