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1.
J R Soc Interface ; 14(130)2017 05.
Article in English | MEDLINE | ID: mdl-28468917

ABSTRACT

The circadian regulation of gene expression allows plants and animals to anticipate predictable environmental changes. While the influence of the circadian clock has recently been shown to extend to ribosome biogenesis, the dynamics and regulation of the many small nucleolar RNA that are required in pre-ribosomal RNA folding and modification are unknown. Using a novel computational method, we show that 18S and 28S pre-rRNA are subject to circadian regulation in a nuclear RNA sequencing time course. A population of snoRNA with circadian expression is identified that is functionally associated with rRNA modification. More generally, we find the abundance of snoRNA known to modify 18S and 28S to be inversely correlated with the abundance of their target. Cyclic patterns in the expression of a number of snoRNA indicate a coordination with rRNA maturation, potentially through an upregulation in their biogenesis, or their release from mature rRNA at the end of the previous cycle of rRNA maturation, in antiphase with the diurnal peak in pre-rRNA. Few cyclic snoRNA have cyclic host genes, indicating the action of regulatory mechanisms in addition to transcriptional activation of the host gene. For highly expressed independently transcribed snoRNA, we find a characteristic RNA polymerase II and H3K4me3 signature that correlates with mean snoRNA expression over the day.


Subject(s)
Circadian Rhythm/physiology , Gene Expression Regulation/physiology , Liver/metabolism , Models, Biological , RNA, Small Nuclear/biosynthesis , Animals , Mice , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 28S/biosynthesis
2.
PLoS One ; 11(1): e0147284, 2016.
Article in English | MEDLINE | ID: mdl-26824605

ABSTRACT

External loads applied to skeletal muscle cause increases in the protein translation rate, which leads to muscle hypertrophy. Although some studies have demonstrated that increases in the capacity and efficiency of translation are involved in this process, it remains unclear how these two factors are related to the magnitude of muscle hypertrophy. The present study aimed to clarify the roles played by the capacity and efficiency of translation in muscle hypertrophy. We used an improved synergist ablation in which the magnitude of compensatory hypertrophy could be controlled by partial removal of synergist muscles. Male rats were assigned to four groups in which the plantaris muscle was unilaterally subjected to weak (WK), moderate (MO), middle (MI), and strong (ST) overloading by four types of synergist ablation. Fourteen days after surgery, the weight of the plantaris muscle per body weight increased by 8%, 22%, 32% and 45%, in the WK, MO, MI and ST groups, respectively. Five days after surgery, 18+28S rRNA content (an indicator of translational capacity) increased with increasing overload, with increases of 1.8-fold (MO), 2.2-fold (MI), and 2.5-fold (ST), respectively, relative to non-overloaded muscle (NL) in the WK group. rRNA content showed a strong correlation with relative muscle weight measured 14 days after surgery (r = 0.98). The phosphorylated form of p70S6K (a positive regulator of translational efficiency) showed a marked increase in the MO group, but no further increase was observed with further increase in overload (increases of 22.6-fold (MO), 17.4-fold (MI), and 18.2-fold (ST), respectively, relative to NL in the WK group). These results indicate that increases in ribosome biogenesis at the early phase of overloading are strongly dependent on the amount of overloading, and may play an important role in increasing the translational capacity for further gain of muscular size.


Subject(s)
Hypertrophy/metabolism , Muscle Proteins/biosynthesis , Muscle, Skeletal/metabolism , Protein Biosynthesis , Ribosomal Protein S6 Kinases, 70-kDa/biosynthesis , Ribosomes/metabolism , Animals , Hypertrophy/genetics , Hypertrophy/physiopathology , Hypertrophy/surgery , Male , Muscle Proteins/genetics , Muscle, Skeletal/physiopathology , Muscle, Skeletal/surgery , Organelle Biogenesis , Phosphorylation , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Rats , Rats, Wistar , Ribosomal Protein S6 Kinases, 70-kDa/genetics , Ribosomes/genetics
3.
J Appl Physiol (1985) ; 119(4): 321-7, 2015 Aug 15.
Article in English | MEDLINE | ID: mdl-26048973

ABSTRACT

The ability of skeletal muscle to hypertrophy in response to a growth stimulus is known to be compromised in older individuals. We hypothesized that a change in the expression of protein-encoding genes in response to a hypertrophic stimulus contributes to the blunted hypertrophy observed with aging. To test this hypothesis, we determined gene expression by microarray analysis of plantaris muscle from 5- and 25-mo-old mice subjected to 1, 3, 5, 7, 10, and 14 days of synergist ablation to induce hypertrophy. Overall, 1,607 genes were identified as being differentially expressed across the time course between young and old groups; however, the difference in gene expression was modest, with cluster analysis showing a similar pattern of expression between the two groups. Despite ribosome protein gene expression being higher in the aged group, ribosome biogenesis was significantly blunted in the skeletal muscle of aged mice compared with mice young in response to the hypertrophic stimulus (50% vs. 2.5-fold, respectively). The failure to upregulate pre-47S ribosomal RNA (rRNA) expression in muscle undergoing hypertrophy of old mice indicated that rDNA transcription by RNA polymerase I was impaired. Contrary to our hypothesis, the findings of the study suggest that impaired ribosome biogenesis was a primary factor underlying the blunted hypertrophic response observed in skeletal muscle of old mice rather than dramatic differences in the expression of protein-encoding genes. The diminished increase in total RNA, pre-47S rRNA, and 28S rRNA expression in aged muscle suggest that the primary dysfunction in ribosome biogenesis occurs at the level of rRNA transcription and processing.


Subject(s)
Aging , Muscle, Skeletal/metabolism , Protein Biosynthesis , RNA, Ribosomal/biosynthesis , Ribosomes/metabolism , Age Factors , Aging/genetics , Aging/metabolism , Aging/pathology , Animals , DNA, Ribosomal/genetics , DNA, Ribosomal/metabolism , Gene Expression Profiling/methods , Gene Expression Regulation , Hypertrophy , Male , Mice, Inbred C57BL , Muscle, Skeletal/pathology , Oligonucleotide Array Sequence Analysis , RNA, Ribosomal/genetics , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Ribosomes/genetics , Time Factors , Transcription, Genetic
4.
PLoS One ; 9(8): e104364, 2014.
Article in English | MEDLINE | ID: mdl-25089620

ABSTRACT

Long-term memory (LTM) formation requires new protein synthesis and new gene expression. Based on our work in Aplysia, we hypothesized that the rRNA genes, stimulation-dependent targets of the enzyme Poly(ADP-ribose) polymerase-1 (PARP-1), are primary effectors of the activity-dependent changes in synaptic function that maintain synaptic plasticity and memory. Using electrophysiology, immunohistochemistry, pharmacology and molecular biology techniques, we show here, for the first time, that the maintenance of forskolin-induced late-phase long-term potentiation (L-LTP) in mouse hippocampal slices requires nucleolar integrity and the expression of new rRNAs. The activity-dependent upregulation of rRNA, as well as L-LTP expression, are poly(ADP-ribosyl)ation (PAR) dependent and accompanied by an increase in nuclear PARP-1 and Poly(ADP) ribose molecules (pADPr) after forskolin stimulation. The upregulation of PARP-1 and pADPr is regulated by Protein kinase A (PKA) and extracellular signal-regulated kinase (ERK)--two kinases strongly associated with long-term plasticity and learning and memory. Selective inhibition of RNA Polymerase I (Pol I), responsible for the synthesis of precursor rRNA, results in the segmentation of nucleoli, the exclusion of PARP-1 from functional nucleolar compartments and disrupted L-LTP maintenance. Taken as a whole, these results suggest that new rRNAs (28S, 18S, and 5.8S ribosomal components)--hence, new ribosomes and nucleoli integrity--are required for the maintenance of long-term synaptic plasticity. This provides a mechanistic link between stimulation-dependent gene expression and the new protein synthesis known to be required for memory consolidation.


Subject(s)
Long-Term Potentiation/genetics , Memory, Long-Term/physiology , Neuronal Plasticity/genetics , Poly(ADP-ribose) Polymerases/biosynthesis , Synapses/genetics , Animals , Colforsin/administration & dosage , Cyclic AMP-Dependent Protein Kinases/biosynthesis , Cyclic AMP-Dependent Protein Kinases/genetics , Gene Expression/drug effects , Hippocampus/drug effects , Hippocampus/physiology , Long-Term Potentiation/drug effects , Long-Term Potentiation/physiology , MAP Kinase Signaling System/drug effects , MAP Kinase Signaling System/genetics , Mice , Neuronal Plasticity/physiology , Poly (ADP-Ribose) Polymerase-1 , Poly Adenosine Diphosphate Ribose/biosynthesis , Poly Adenosine Diphosphate Ribose/genetics , Poly(ADP-ribose) Polymerases/genetics , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Synapses/physiology
5.
J Cell Physiol ; 214(2): 381-8, 2008 Feb.
Article in English | MEDLINE | ID: mdl-17654514

ABSTRACT

Ribosomal RNA (rRNA) in vertebrates is initially transcribed as a single 47S precursor which is modified by the addition of 2'-O-methyl ribose moieties, pseudouridines, and methyl groups, followed by cleavage at several sites to produce the mature 28S, 18S, and 5.8S rRNAs. Cleavage of the rRNA precursor to generate the 18S rRNA is mediated by a ribonucleoprotein (RNP) complex termed the processome containing U3, a box C/D small nucleolar RNA (snoRNA), and at least 28 cellular proteins. We previously identified a novel human RNA binding protein, NF-kappaB binding protein (NFBP), which is the human homolog of Rrp5p, a protein component of the yeast U3 processome. Here, we show that NFBP colocalizes with and coprecipitates U3 in the nucleolus. We also demonstrate that NFBP is essential for the generation of 18S rRNA as maturation of the 18S rRNA is repressed in the absence of NFBP. Using Northern blot analyses, we further show that NFBP is specifically necessary for cleavages at sites A0, 1, and 2, as unprocessed intermediate forms of rRNA accumulated in the absence of NFBP.


Subject(s)
Nuclear Proteins/metabolism , RNA Processing, Post-Transcriptional , RNA, Ribosomal/metabolism , RNA-Binding Proteins/metabolism , Ribosomes/metabolism , HeLa Cells , Humans , Immunohistochemistry , In Situ Hybridization , Minor Histocompatibility Antigens , Precipitin Tests , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 5.8S/biosynthesis , RNA, Small Interfering/metabolism , Transfection
6.
Toxicology ; 243(1-2): 145-54, 2008 Jan 14.
Article in English | MEDLINE | ID: mdl-18006205

ABSTRACT

Deoxynivalenol (DON) and other trichothecene mycotoxins mediate a broad range of epithelial injury including atrophic growth inhibition and inflammation in the human gastrointestinal and respiratory tracts. The purpose of this study was to test the hypothesis that DON alters the cell cycle progress linked to the pathogenesis in the human epithelium. We demonstrated that human epithelial cells underwent G(2)/M phase arrest in response to DON treatment without significant increase in apoptotic cell death. Moreover, cells deficient in p21 or p53 gene expression showed the attenuated response of G(2)/M phase arrest by DON. Gene expression of p21 was also induced by DON treatment in a dose-dependent manner with no increase in p53 protein levels, suggesting p53-independent p21 induction. Signaling pathways associated with DON-induced p21 gene expression included PI3 kinase and ERK1/2 MAP kinase cascade. Particularly, ERK1/2 signal was associated with DON-induced p21 mRNA stabilization in the human epithelial cells. Taken together, deoxynivalenol arrested epithelial cell cycle at G(2)/M phase via elevated p21 gene expression.


Subject(s)
Cell Division/drug effects , Cyclin-Dependent Kinase Inhibitor p21/biosynthesis , Epithelial Cells/drug effects , G2 Phase/drug effects , RNA Stability/drug effects , RNA, Messenger/biosynthesis , Trichothecenes/toxicity , Blotting, Western , Cell Division/genetics , Cell Line , Cell Survival/drug effects , Cyclin-Dependent Kinase Inhibitor p21/genetics , Epithelial Cells/cytology , Epithelial Cells/metabolism , Extracellular Signal-Regulated MAP Kinases/metabolism , G2 Phase/genetics , Gene Expression/drug effects , Humans , Luciferases, Firefly/genetics , Phosphatidylinositol 3-Kinases/metabolism , Plasmids , RNA, Messenger/genetics , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Reverse Transcriptase Polymerase Chain Reaction , Transfection , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Protein p53/metabolism
7.
Biol Pharm Bull ; 30(8): 1472-6, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17666806

ABSTRACT

We determined the DNA sequences of the internal transcribed spacer 1 and 2 (ITS 1 and 2), the 5.8S rRNA gene and most of the 28S rRNA gene of Poria cocos for the first time, and conducted analysis of 20 samples including cultured mycelias and crude drug materials obtained from various localities and markets. Direct sequencing of the ITS 1 and 2 regions of the samples, except for four wild samples, showed that they had identical DNA sequences for ITS 1 and 2 with nucleotide lengths of 997 bps and 460 bps, respectively. By cloning, the four wild samples were found to have combined sequences of common ITS sequences with 1 or 2-base-pair insertions. Altogether both ITS 1 and 2 sequences were substantially longer than those of other fungal crude drugs such as Ganoderma lucidum and Polyporus umbellatus. Thus, Poria cocos could be distinguished from these crude drugs and fakes by comparing the nucleotide length of PCR products of ITS 1 and 2. Contrary to the basic homogeneity in ITS 1 and 2, three types (Group 1, 2, 3) of the 28S rRNA gene with distinctive differences in length and sequence were found. Furthermore, Group 1 could be divided into three subgroups depending on differences at nucleotide position 690. Products with different types of 28S rRNA gene were found in crude drugs from Yunnan and Anhui Provinces as well as the Korean Peninsula, suggesting that the locality of the crude drugs does not guarantee genetic uniformity. The result of DNA typing of Poria cocos may help discrimination of the quality of the crude drug by genotype.


Subject(s)
DNA, Fungal/analysis , DNA, Fungal/genetics , Polyporales/metabolism , RNA, Ribosomal, 28S/biosynthesis , Mutation , Mycelium/chemistry , Mycelium/metabolism , Polymorphism, Restriction Fragment Length , RNA , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA
8.
Circulation ; 109(8): 1036-40, 2004 Mar 02.
Article in English | MEDLINE | ID: mdl-14967723

ABSTRACT

BACKGROUND: Hypoxic human coronary smooth muscle cells (HCSMCs) are possible targets for brachytherapy to prevent restenosis after percutaneous transluminal coronary angiography. It is unclear whether growth kinetics and gene expression of these cells undergoing gamma-irradiation are changed by reoxygenation. METHODS AND RESULTS: Hypoxic (H) and hypoxia-reoxygenated (H-R) HCSMCs were irradiated with gamma-radiation at single doses of 4, 8, and 16 Gy using a 60Co-source. Vascular endothelial growth factor gene expression of HCSMCs was dramatically suppressed in H-R versus H cells independent of the radiation dose (15+/-7% versus 2183+/-2023%, P<0.01, H-R versus H cells). An oxygen enhancement ratio of 1.8 was calculated after irradiation from the retarded growth of H-R versus hypoxic HCSMCs. Production of reactive oxygen species by HCSMCs after irradiation increased by 15+/-2% in H-R cells versus 7+/-1% in H cells (P<0.05). CONCLUSIONS: Reoxygenation of hypoxic HCSMCs markedly amplifies growth-retarding effects of ionizing irradiation. On the basis of these findings, oxygenating radiosensitizers should be analyzed with regard to suitability for coronary brachytherapy to prevent restenosis.


Subject(s)
Coronary Vessels/radiation effects , Gamma Rays , Muscle Cells/radiation effects , Muscle, Smooth, Vascular/radiation effects , Oxygen/metabolism , Brachytherapy , Cell Division/radiation effects , Cell Hypoxia , Cells, Cultured/metabolism , Cells, Cultured/radiation effects , Coronary Vessels/metabolism , Dose-Response Relationship, Radiation , Gene Expression Regulation/radiation effects , Humans , Muscle Cells/metabolism , Muscle, Smooth, Vascular/metabolism , RNA, Messenger/biosynthesis , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Radiation Tolerance , Reactive Oxygen Species , Vascular Endothelial Growth Factor A/biosynthesis , Vascular Endothelial Growth Factor A/genetics
9.
Nucleic Acids Res ; 31(21): 6148-56, 2003 Nov 01.
Article in English | MEDLINE | ID: mdl-14576301

ABSTRACT

The proto-oncogene c-myc encodes a basic helix-loop-helix leucine zipper transcription factor (c-Myc) that has a profound role in growth control and cell cycle progression. Previous microarray studies identified various classes of c-Myc target genes, including genes involved in ribosome biogenesis. By screening the human B-cell line P493-6 and rat fibroblasts conditionally expressing c-Myc, we could substantially extend the list of c-Myc target genes, particularly those required for ribosome biogenesis. The identification of 38 new c-Myc target genes with nucleolar function, prompted us to investigate processing of ribosomal RNA (rRNA). Using pulse-chase labelling experiments we show that c-Myc regulates the efficiency of rRNA maturation. In serum-stimulated P493-6 cells, only the processing of the 47S rRNA precursor to mature 18S and 28S rRNA, but not the synthesis of the 47S transcript, was dependent on the presence of c-Myc. As processing of rRNA is sensitive to inhibition of cyclin-dependent kinase (cdk) activity by roscovitine, we conclude that c-Myc regulates cell growth and proliferation by the coordinated induction of cdk activity and rRNA processing.


Subject(s)
Proto-Oncogene Proteins c-myc/metabolism , RNA Precursors/metabolism , RNA Processing, Post-Transcriptional , RNA, Ribosomal/metabolism , Animals , B-Lymphocytes , Cell Cycle , Cell Line , Cell Nucleolus/drug effects , Cell Nucleolus/genetics , Cyclin-Dependent Kinases/antagonists & inhibitors , Cyclin-Dependent Kinases/metabolism , Fibroblasts , Humans , Kinetics , Mitogens/pharmacology , Models, Genetic , Oligonucleotide Array Sequence Analysis , Proto-Oncogene Mas , Proto-Oncogene Proteins c-myc/genetics , Purines/pharmacology , RNA Polymerase I/metabolism , RNA Precursors/chemistry , RNA Precursors/genetics , RNA Processing, Post-Transcriptional/drug effects , RNA, Ribosomal/biosynthesis , RNA, Ribosomal/chemistry , RNA, Ribosomal/genetics , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 18S/chemistry , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 18S/metabolism , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/chemistry , RNA, Ribosomal, 28S/genetics , RNA, Ribosomal, 28S/metabolism , Rats , Ribosomes/drug effects , Ribosomes/genetics , Ribosomes/metabolism , Roscovitine , Substrate Specificity , Transcription, Genetic/genetics
10.
Biol Pharm Bull ; 23(11): 1303-6, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11085356

ABSTRACT

The beta-adrenergic system is very important in cardiovascular medicine. Thyroid hormone (T3) affects beta-adrenergic receptors. In cell culture, isoproterenol, a beta-adrenergic agonist, has been shown to upregulate thyroid hormone receptor (TR) mRNA, thus indicating a bi-directional regulation. The aim of this study was to evaluate if beta-adrenoreceptor blockade may affect subtype TR mRNA expression in vivo. Propranolol or vehicle was delivered by implanting an Alzet osmotic pump subcutaneously in mice for 14d. The concentration of TRalpha1, alpha2, beta1 and beta2 subtype mRNA concentrations were quantified by reverse transcription-polymerase chain reaction and ELISA. Propranolol downregulated the levels of TRalpha1 by 44% (p < 0.0005) and beta1 mRNA by 39% (p < 0.0005) in mouse heart, in comparison to the control, while no difference in the TRalpha2 or beta2 mRNA levels occurred. The heart rate was reduced by 10% (p < 0.05) in the propranolol group, whereas no reduction was detected in the control group. In mouse treated with propranolol serum, T3 levels were 21% lower, (p < 0.05) while serum T4 levels were 23% higher (p < 0.05) in comparison to the control. This is the first study suggesting that a beta-adrenoreceptor blockade subtype selectively regulates TR mRNA subtypes, thus giving us further knowledge about the interaction between the beta-adrenergic system and the thyroid hormone sytem.


Subject(s)
Adrenergic beta-Antagonists/pharmacology , Down-Regulation/drug effects , Heart/drug effects , RNA, Messenger/biosynthesis , Receptors, Thyroid Hormone/biosynthesis , Animals , Electrocardiography/drug effects , Enzyme-Linked Immunosorbent Assay , Heart Rate/drug effects , Mice , Myocardium/metabolism , Propranolol/pharmacology , RNA , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Reference Standards , Reverse Transcriptase Polymerase Chain Reaction , Thyroxine/blood , Triiodothyronine/blood
11.
Proc Natl Acad Sci U S A ; 95(5): 2083-8, 1998 Mar 03.
Article in English | MEDLINE | ID: mdl-9482842

ABSTRACT

The R1Bm element, found in the silkworm Bombyx mori, is a member of a group of widely distributed retrotransposons that lack long terminal repeats. Some of these elements are highly sequence-specific and others, like the human L1 sequence, are less so. The majority of R1Bm elements are associated with ribosomal DNA (rDNA). R1Bm inserts into 28S rDNA at a specific sequence; after insertion it is flanked by a specific 14-bp target site duplication of the 28S rDNA. The basis for this sequence specificity is unknown. We show that R1Bm encodes an enzyme related to the endonuclease found in the human L1 retrotransposon and also to the apurinic/apyrimidinic endonucleases. We expressed and purified the enzyme from bacteria and showed that it cleaves in vitro precisely at the positions in rDNA corresponding to the boundaries of the 14-bp target site duplication. We conclude that the function of the retrotransposon endonucleases is to define and cleave target site DNA.


Subject(s)
Bombyx/genetics , Endonucleases/metabolism , Repetitive Sequences, Nucleic Acid , Retroelements/physiology , Amino Acid Sequence , Animals , Base Sequence , Cloning, Organism , DNA, Ribosomal/chemistry , DNA, Ribosomal/metabolism , Endonucleases/chemistry , Humans , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Nucleic Acid Conformation , Polymerase Chain Reaction , RNA, Ribosomal, 28S/biosynthesis , RNA, Ribosomal, 28S/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Substrate Specificity
12.
Biochem J ; 327 ( Pt 2): 413-7, 1997 Oct 15.
Article in English | MEDLINE | ID: mdl-9359409

ABSTRACT

Inhibition of protein synthesis by cleavage of the N-glycosidic bond of a specific adenine of 28 S rRNA has been accepted as the mechanism by which plant ribosome-inactivating proteins (RIPs) cause cytotoxicity. The cytotoxic action of gelonin on Plasmodium falciparum malaria parasites appears to occur by a different mechanism. Parasite intoxication, which is manifested by mitochondrial dysfunction and lack of nucleic acid synthesis in the erythrocytic cycle following exposure to the toxin, is caused by the elimination of the parasite 6 kb extrachromosomal (mitochondrial) DNA. This is the first report which demonstrates that the DNA-damaging activities of RIPs observed in vitro can contribute to their cytotoxicity.


Subject(s)
DNA Damage , DNA, Mitochondrial/drug effects , DNA, Protozoan/drug effects , Plant Proteins/toxicity , Plasmodium falciparum/drug effects , Plasmodium falciparum/physiology , Protein Synthesis Inhibitors/toxicity , Ribosomes/drug effects , Animals , DNA, Protozoan/biosynthesis , Erythrocytes/parasitology , Humans , Malaria, Falciparum/blood , RNA, Protozoan/biosynthesis , RNA, Ribosomal, 28S/biosynthesis , Ribosome Inactivating Proteins, Type 1
13.
Diabetes ; 45(4): 434-9, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8603764

ABSTRACT

Intestinal proglucagon is thought to be synthesized primarily by the distal gut, although the role of proglucagon-derived glucagon-like peptide I (GLP-I) as a major physiological incretin would seem to be associated with production in proximal small bowel. To better characterize the sites of production of proglucagon and GLP-I in the small intestine and evaluate nutrient regulation of small bowel proglucagon and derived peptides, we evaluated the effects of fasting for 72 h and subsequent refeeding or jejunal infusion of long-chain triglyceride (LCT) for 24 h on local expression of proglucagon in proximal and distal small bowel. Proglucagon mRNA abundance and cellular localization were determined and correlated with wet weight of bowel. In jejunum, proglucagon mRNA abundance decreased by 40% with fasting (P < 0.005) and increased with refeeding to levels similar to those of ad libitum-fed animals. In ileum, fasting resulted in a 20% decrease in proglucagon mRNA (P < 0.005); in contrast to jejunum, refeeding did not result in a significant rise in ileal proglucagon mRNA abundance from fasting values. In jejunum, signal intensity of proglucagon mRNA per cell, determined by in situ hybridization, decreased with fasting (P < 0.05) and increased with refeeding (P < 0.005) in proportion to changes in mRNA abundance. Plasma enteroglucagon and GLP-I levels correlated with jejunal proglucagon mRNA. Intrajejunal infusion of LCT increased expression of proglucagon to a greater extent in jejunum than in ileum. In conclusion, enteral nutrient intake stimulates small bowel proglucagon expression; this effect is greater in jejunum than ileum, consistent with greater intraluminal nutrient exposure and the role of jejunum as a source of the major incretin GLP-I.


Subject(s)
Eating , Fasting , Gene Expression , Glucagon/biosynthesis , Ileum/metabolism , Jejunum/metabolism , Peptide Fragments/biosynthesis , Protein Precursors/biosynthesis , Triglycerides/metabolism , Triglycerides/pharmacology , Animals , Blotting, Northern , Gene Expression/drug effects , Glucagon/analysis , Glucagon-Like Peptide 1 , In Situ Hybridization , Male , Peptide Fragments/analysis , Proglucagon , Protein Precursors/analysis , RNA, Messenger/analysis , RNA, Messenger/biosynthesis , RNA, Ribosomal, 28S/analysis , RNA, Ribosomal, 28S/biosynthesis , Radioimmunoassay , Rats , Rats, Sprague-Dawley , Regression Analysis
14.
Mol Cell Biochem ; 155(1): 85-90, 1996 Feb 09.
Article in English | MEDLINE | ID: mdl-8717443

ABSTRACT

Whether the gene expression of hepatic Ca(2+)-binding protein regucalcin is altered in hepatomas was investigated. The change in regucalcin mRNA levels was analyzed by Northern blotting using liver regucalcin complementary DNA (0.9 kb). Rat hepatoma was induced by continuous feeding of basal diet containing 0.06% 3'-methyl-4-dimethylaminoazobenzene (3'-Me-DAB). After 35 weeks feeding, rats were sacrificed, and the non-tumorous and tumorous tissues of the livers were removed. In individual rats, the regucalcin mRNA levels in the tumorous tissues were generally decreased in comparison with that of the non-tumorous tissues of the chemical-fed rats, although the chemical administration might decrease the mRNA expression in normal rat liver, suggesting that the chemical administration causes a suppressive effect on the mRNA expression. When the genomic DNA extracted from the liver tumorous tissues was digested with restriction enzymes (EcoRI, BamHI and HindIII) and analyzed by Southern blotting, no rear-ranged band was found in the regucalcin gene from the hepatoma. Interestingly, in the transplantable Morris hepatoma cells, the regucalcin mRNA was markedly expressed, while the albumin mRNA was expressed only slightly. The present study demonstrates that regucalcin mRNA is clearly expressed in the transformed cells (Morris hepatoma cells).


Subject(s)
Calcium-Binding Proteins/biosynthesis , Gene Expression , Liver Neoplasms, Experimental/metabolism , Liver/metabolism , RNA, Messenger/biosynthesis , Animals , Blotting, Northern , Blotting, Southern , Carboxylic Ester Hydrolases , Intracellular Signaling Peptides and Proteins , Male , RNA, Ribosomal, 28S/biosynthesis , Rats , Rats, Sprague-Dawley , Reference Values , Restriction Mapping , Serum Albumin/biosynthesis , Sulfotransferases
15.
J Virol ; 68(10): 6547-52, 1994 Oct.
Article in English | MEDLINE | ID: mdl-8083991

ABSTRACT

Cells infected with poliovirus express a virally encoded polyprotein which undergoes self-mediated cleavage into structural and nonstructural viral proteins. Most of these cleavages are catalyzed by the 3C proteolytic domain of the polyprotein. Polyprotein synthesized in vitro from an RNA template containing a three-nucleotide insertion in 3C underwent proteolytic processing at all but one of the 3C-dependent cleavage sites. When transfected into HeLa cells, this RNA template displayed a lethal phenotype. We report here the isolation of two pseudorevertant progeny strains with restored protein-processing phenotypes, one of which appears to have arisen by transduction of a stretch of nucleotides from human 28S rRNA.


Subject(s)
Poliovirus/genetics , RNA, Ribosomal, 28S/biosynthesis , RNA, Viral/metabolism , Viral Proteins/biosynthesis , Amino Acid Sequence , Base Sequence , HeLa Cells , Humans , Methionine/metabolism , Models, Genetic , Molecular Sequence Data , Mutagenesis, Site-Directed , Phenotype , Poliovirus/metabolism , Protein Biosynthesis , Ribosomes/metabolism , Templates, Genetic , Transduction, Genetic , Transfection
16.
J Anim Sci ; 72(9): 2279-88, 1994 Sep.
Article in English | MEDLINE | ID: mdl-8002447

ABSTRACT

We examined the effects of horse and fetal bovine sera and insulin-like growth factor I (IGF-I) on proteolysis and protease gene expression in rat L8 skeletal myotube cultures. Protein degradation was measured as release of radioactive trichloroacetic acid (TCA)-soluble materials from intracellular proteins prelabeled with [3H]tyrosine. Horse serum and fetal bovine serum inhibited (P < .05) protein degradation by 19.7 and 8.1%, respectively. The IGF-I at 200 ng/mL inhibited protein degradation by 14% (P < .01) over a 6-h measurement period. To study the regulation of proteolysis by IGF-I, we evaluated its effects on protease mRNA and alpha-tubulin mRNA concentrations by Northern blot analysis. Proteases under investigation included cathepsins B and D, proteasome C2 subunit, and m-calpain. The IGF-I had no effect (P > .05) on cathepsin B and D gene expression but slightly increased (P < .05) m-calpain and alpha-tubulin mRNA concentrations. Proteasome mRNA concentration was reduced (P < .05) by IGF-I treatment. The changes in proteasome mRNA levels paralleled the IGF-I-dependent alterations in proteolysis. These observations suggest that effects of IGF-I on muscle protein degradation may be mediated by the specific down-regulation of proteasomal subunit mRNAs.


Subject(s)
Endopeptidases/genetics , Gene Expression Regulation, Enzymologic , Insulin-Like Growth Factor I/pharmacology , Muscle Proteins/metabolism , Muscle, Skeletal/enzymology , Animals , Base Sequence , Blood Physiological Phenomena , Blotting, Northern , Cattle , Cell Line , Fetal Blood/physiology , Gene Expression Regulation, Enzymologic/drug effects , Horses , Molecular Sequence Data , Muscle, Skeletal/drug effects , Oligonucleotide Probes/chemistry , RNA, Messenger/biosynthesis , RNA, Ribosomal, 28S/biosynthesis , Rats , Tubulin/genetics
17.
Brain Res Mol Brain Res ; 24(1-4): 140-4, 1994 Jul.
Article in English | MEDLINE | ID: mdl-7526112

ABSTRACT

Transcription of the gene encoding amyloid precursor protein (APP) varies in a cell-specific and developmentally regulated manner. The 5' region of this gene possesses a high frequency of CpG dinucleotides as well as copies of a GC-rich sequence, a potential trans factor binding element. These findings raise the possibility that DNA cytosine methylation could participate in the regulation of APP gene expression. We examined APP mRNA/18S rRNA ratio in three neural cell lines (N18TG2, SN6, SN17) cultured in 5-azacytidine (5-AZA), an inhibitor of maintenance methylase which results in loss of cytosine methylation in proliferating cells. Culture in 5-AZA globally reduced methylation in genomic DNA as assessed by an increase in HpaII restriction sites, reduced cytosine methylation in the APP gene as assessed by Southern blotting of HpaII digests, and increased APP mRNA steady state abundance in all studied cell lines. Cell lines re-acquired APP gene methylation 48 h after removal of 5-AZA from media. These results indicate that in vitro alteration of DNA methylation can affect APP gene expression, and suggest that the APP gene in neuronal cell lines may be rapidly inactivated in vitro, perhaps to neutralize its potential toxicity.


Subject(s)
Amyloid beta-Protein Precursor/biosynthesis , Azacitidine/pharmacology , Cytosine , DNA, Neoplasm/metabolism , Gene Expression , Neuroblastoma/metabolism , RNA, Messenger/biosynthesis , Animals , Cell Line , DNA, Neoplasm/drug effects , Gene Expression/drug effects , Gene Expression Regulation, Neoplastic/drug effects , Methylation , Mice , RNA, Messenger/analysis , RNA, Ribosomal, 28S/analysis , RNA, Ribosomal, 28S/biosynthesis , Restriction Mapping
18.
Mol Cell Biol ; 14(6): 4044-56, 1994 Jun.
Article in English | MEDLINE | ID: mdl-8196643

ABSTRACT

The processing of pre-rRNA in eukaryotic cells involves a complex pattern of nucleolytic reactions taking place in preribosomes with the participation of several nonribosomal proteins and small nuclear RNAs. The mechanism of these reactions remains largely unknown, mainly because of the absence of faithful in vitro assays for most processing steps. We have developed a pre-rRNA processing system using the transient expression of ribosomal minigenes transfected into cultured mouse cells. Truncated mouse or human rRNA genes are faithfully transcribed under the control of mouse promoter and terminator signals. The fate of these transcripts is analyzed by the use of reporter sequences flanking the rRNA gene inserts. Both mouse and human transcripts, containing the 3' end of 18S rRNA-encoding DNA (rDNA), internal transcribed spacer (ITS) 1, 5.8S rDNA, ITS 2, and the 5' end of 28S rDNA, are processed predominantly to molecules coterminal with the natural mature rRNAs plus minor products corresponding to cleavages within ITS 1 and ITS 2. To delineate cis-acting signals in pre-rRNA processing, we studied series of more truncated human-mouse minigenes. A faithful processing at the 18S rRNA/ITS 1 junction can be observed with transcripts containing only the 60 3'-terminal nucleotides of 18S rRNA and the 533 proximal nucleotides of ITS 1. However, further truncation of 18S rRNA (to 8 nucleotides) or of ITS 1 (to 48 nucleotides) abolishes the cleavage of the transcript. Processing at the ITS 2/28S rRNA junction is observed with truncated transcripts lacking the 5.8S rRNA plus a major part of ITS 2 and containing only 502 nucleotides of 28S rRNA. However, further truncation of the 28S rRNA segment to 217 nucleotides abolishes processing. Minigene transcripts containing most internal sequences of either ITS 1 or ITS 2, but devoid of ITS/mature rRNA junctions, are not processed, suggesting that the cleavages in vivo within either ITS segment are dependent on the presence in cis of mature rRNA sequences. These results show that the major cis signals for pre-rRNA processing at the 18S rRNA/ITS 1 or the ITS2/28S rRNA junction involve solely a limited critical length of the respective mature rRNA and adjacent spacer sequences.


Subject(s)
DNA, Ribosomal/metabolism , RNA Precursors/metabolism , RNA Processing, Post-Transcriptional , RNA, Ribosomal, 18S/biosynthesis , RNA, Ribosomal, 28S/biosynthesis , Ribosomes/metabolism , Transcription, Genetic , 3T3 Cells , Animals , Base Sequence , Blotting, Northern , Humans , L Cells , Mice , Molecular Sequence Data , Oligodeoxyribonucleotides , Plasmids , RNA, Ribosomal, 18S/isolation & purification , RNA, Ribosomal, 28S/isolation & purification , Restriction Mapping , Transfection
19.
Circ Res ; 74(3): 448-59, 1994 Mar.
Article in English | MEDLINE | ID: mdl-8118953

ABSTRACT

An electrical stimulation system was designed to regulate synchronized contractile activity of neonatal rat cardiocytes and to examine the effects of mechanical contraction on cardiocyte growth. Continuous electrical stimulation at a pulse duration of 5 milliseconds and frequency of 3 Hz resulted in a time-dependent accumulation of cell protein that reached 34% above initial values, as measured by the protein-to-DNA ratio. The growth response did not occur using voltage amplitudes that were subthreshold for contraction and was independent of contraction frequencies set at > or = 0.5 Hz. The RNA-to-DNA ratio increased in parallel to cell protein, indicating that the capacity for protein synthesis was enhanced by contraction. Rates of 28S rRNA synthesis were accelerated twofold in contracting cardiocytes. By comparison, protein and RNA accumulation did not occur in electrically stimulated cardiocytes in which contraction was blocked by either 10 mumol/L verapamil or by 5 mmol/L 2,3-butanedione monoxime, an inhibitor of actomyosin crossbridge cycling. Electrical stimulation of cardiocyte contraction did not enhance alpha-cardiac actin or myosin heavy chain (alpha+beta) mRNA transcript levels relative to 28S rRNA during the period of rapid growth that occurred over the first 48 hours. It is concluded that (1) electrical stimulation of contraction accelerates cardiocyte growth and RNA accumulation, (2) mechanical contraction is involved in regulating the growth of electrically stimulated cardiocytes, and (3) the levels of alpha-actin and myosin heavy chain mRNA increase in proportion to rRNA during the growth of contracting cardiocytes.


Subject(s)
Myocardial Contraction/physiology , Myocardium/cytology , Animals , Animals, Newborn , Base Sequence , Cell Division/physiology , Cells, Cultured , Contractile Proteins/genetics , Diacetyl/analogs & derivatives , Diacetyl/pharmacology , Electric Stimulation , Hypertrophy , Molecular Sequence Data , Myocardium/metabolism , Myocardium/pathology , Norepinephrine/pharmacology , Oligonucleotide Probes/genetics , RNA, Messenger/metabolism , RNA, Ribosomal/metabolism , RNA, Ribosomal, 28S/biosynthesis , Rats , Verapamil/pharmacology
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