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1.
Nat Commun ; 15(1): 5499, 2024 Jun 29.
Article in English | MEDLINE | ID: mdl-38951509

ABSTRACT

Argonaute proteins are the central effectors of RNA-guided RNA silencing pathways in eukaryotes, playing crucial roles in gene repression and defense against viruses and transposons. Eukaryotic Argonautes are subdivided into two clades: AGOs generally facilitate miRNA- or siRNA-mediated silencing, while PIWIs generally facilitate piRNA-mediated silencing. It is currently unclear when and how Argonaute-based RNA silencing mechanisms arose and diverged during the emergence and early evolution of eukaryotes. Here, we show that in Asgard archaea, the closest prokaryotic relatives of eukaryotes, an evolutionary expansion of Argonaute proteins took place. In particular, a deep-branching PIWI protein (HrAgo1) encoded by the genome of the Lokiarchaeon 'Candidatus Harpocratesius repetitus' shares a common origin with eukaryotic PIWI proteins. Contrasting known prokaryotic Argonautes that use single-stranded DNA as guides and/or targets, HrAgo1 mediates RNA-guided RNA cleavage, and facilitates gene silencing when expressed in human cells and supplied with miRNA precursors. A cryo-EM structure of HrAgo1, combined with quantitative single-molecule experiments, reveals that the protein displays structural features and target-binding modes that are a mix of those of eukaryotic AGO and PIWI proteins. Thus, this deep-branching archaeal PIWI may have retained an ancestral molecular architecture that preceded the functional and mechanistic divergence of eukaryotic AGOs and PIWIs.


Subject(s)
Argonaute Proteins , Argonaute Proteins/metabolism , Argonaute Proteins/genetics , Humans , RNA Interference , Archaea/genetics , Archaea/metabolism , RNA, Small Interfering/metabolism , RNA, Small Interfering/genetics , Archaeal Proteins/metabolism , Archaeal Proteins/genetics , Cryoelectron Microscopy , MicroRNAs/genetics , MicroRNAs/metabolism , Evolution, Molecular , Phylogeny
2.
Sci Rep ; 14(1): 15122, 2024 07 02.
Article in English | MEDLINE | ID: mdl-38956289

ABSTRACT

Natalisin (NTL) is a conserved neuropeptide, only present in insects, that has been reported to regulate their sexual activity. In this study, we investigated the involvement of NTL in the reproductive behaviors of a major invasive pest, Spodoptera frugiperda. We identified NTL precursor-encoded transcripts, and evaluated their transcript levels in different stages and tissues of S. frugiperda. The results showed that the NTL transcript level was expressed in both male and female pupae and both male and female adults in the later stage. It was highly expressed in male pupae, 3-day-old male and female adults, and 5-day-old male adults. In different tissues, the expression level is higher in the male and female adult brain and male testis. Immunohistochemical staining of the brain of S. frugiperda female and male adults revealed that three pairs of brain neurons of S. frugiperda adults of both sexes secreted and expressed NTL. To study the role of NTL in reproductive behaviors, NTL was silenced in S. frugiperda male and female adults by RNA interference (RNAi) technology, the results showed that silencing NTL could significantly affect the sexual activity behavior of the adults, reducing the calling rate of females, the courtship rate of males, and the mating rate. In summary, this study emphasizes the important role of NTL in regulating the mating behavior and sexual activity of S. frugiperda in both male and female adults, potentially laying a foundation to employ NTL as a new insect-specific target to control populations of pest insects.


Subject(s)
Neuropeptides , Sexual Behavior, Animal , Spodoptera , Animals , Spodoptera/genetics , Spodoptera/physiology , Male , Female , Neuropeptides/metabolism , Neuropeptides/genetics , Sexual Behavior, Animal/physiology , Insect Proteins/genetics , Insect Proteins/metabolism , Brain/metabolism , RNA Interference , Reproduction
3.
Sci Rep ; 14(1): 15442, 2024 07 04.
Article in English | MEDLINE | ID: mdl-38965312

ABSTRACT

The human intestinal tract is colonized with microorganisms, which present a diverse array of immunological challenges. A number of antimicrobial mechanisms have evolved to cope with these challenges. A key defense mechanism is the expression of inducible antimicrobial peptides (AMPs), such as beta-defensins, which rapidly inactivate microorganisms. We currently have a limited knowledge of mechanisms regulating the inducible expression of AMP genes, especially factors from the host required in these regulatory mechanisms. To identify the host factors required for expression of the beta-defensin-2 gene (HBD2) in intestinal epithelial cells upon a bacterial challenge, we performed a RNAi screen using a siRNA library spanning the whole human genome. The screening was performed in duplicate to select the strongest 79 and 110 hit genes whose silencing promoted or inhibited HBD2 expression, respectively. A set of 57 hits selected among the two groups of genes was subjected to a counter-screening and a subset was subsequently validated for its impact onto HBD2 expression. Among the 57 confirmed hits, we brought out the TLR5-MYD88 signaling pathway, but above all new signaling proteins, epigenetic regulators and transcription factors so far unrevealed in the HBD2 regulatory circuits, like the GATA6 transcription factor involved in inflammatory bowel diseases. This study represents a significant step toward unveiling the key molecular requirements to promote AMP expression in human intestinal epithelial cells, and revealing new potential targets for the development of an innovative therapeutic strategy aiming at stimulating the host AMP expression, at the era of antimicrobial resistance.


Subject(s)
Epithelial Cells , Intestinal Mucosa , beta-Defensins , Humans , beta-Defensins/metabolism , beta-Defensins/genetics , Intestinal Mucosa/metabolism , Intestinal Mucosa/microbiology , Epithelial Cells/metabolism , Epithelial Cells/microbiology , Signal Transduction , Gene Expression Regulation , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Myeloid Differentiation Factor 88/metabolism , Myeloid Differentiation Factor 88/genetics , RNA Interference
4.
Methods Mol Biol ; 2829: 91-107, 2024.
Article in English | MEDLINE | ID: mdl-38951329

ABSTRACT

RNA interference (RNAi) serves as an indispensable tool for gene function studies and has been substantiated through extensive research for its practical applications in the baculovirus expression vector system (BEVS). This chapter expands the RNAi toolkit in insect cell culture by including small interfering RNA (siRNA) in the protocol, in addition to the conventional use of double-stranded RNA (dsRNA). This chapter also brings attention to key design and reporting considerations, based on Minimum Information About an RNAi Experiment (MIARE) guidelines. Recommendations regarding online tools for dsRNA and siRNA design are provided, along with guidance on choosing suitable methods for measuring silencing outcomes.


Subject(s)
Baculoviridae , Genetic Vectors , RNA Interference , RNA, Double-Stranded , RNA, Small Interfering , Animals , Baculoviridae/genetics , RNA, Double-Stranded/genetics , RNA, Small Interfering/genetics , Genetic Vectors/genetics , Insecta/genetics , Cell Line , Sf9 Cells
5.
J Gene Med ; 26(7): e3716, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38961849

ABSTRACT

BACKGROUND: Differentiation of pluripotent stem cells into desired lineages is the key aspect of regenerative medicine and cell-based therapy. Although RNA interference (RNAi) technology is exploited extensively for this, methods for long term silencing of the target genes leading to differentiation remain a challenge. Sustained knockdown of the target gene by RNAi is often inefficient as a result of low delivery efficiencies, protocol induced toxicity and safety concerns related to viral vectors. Earlier, we established octa-arginine functionalized hydroxyapatite nano vehicles (R8HNPs) for delivery of small interfering RNA (siRNA) against a pluripotency marker gene in mouse embryonic stem cells. Although we demonstrated excellent knockdown efficiency of the target gene, sustained gene silencing leading to differentiation was yet to be achieved. METHODS: To establish a sustained non-viral gene silencing protocol using R8HNP, we investigated various methods of siRNA delivery: double delivery of adherent cells (Adh-D), suspension delivery followed by adherent delivery (Susp + Adh), single delivery in suspension (Susp-S) and multiple deliveries in suspension (Susp-R). Sustained knockdown of a pluripotent marker gene followed by differentiation was analysed by reverse transcriptase-PCR, fluoresence-activated cell sorting and immunofluorescence techniques. Impact on cell viability as a result of repeated exposure of the R8HNP was also tested. RESULTS: Amongst the protocols tested, the most efficient knockdown of the target gene for a prolonged period of time was obtained by repeated suspension delivery of the R8HNP-siRNA conjugate. The long-term silencing of a pluripotency marker gene resulted in differentiation of R1 ESCs predominantly towards the extra embryonic and ectodermal lineages. Cells displayed excellent tolerance to repeated exposures of R8HNPs. CONCLUSIONS: The results demonstrate that R8HNPs are promising, biocompatible, non-viral alternatives for prolonged gene silencing and obtaining differentiated cells for therapeutics.


Subject(s)
Cell Differentiation , Durapatite , Mouse Embryonic Stem Cells , RNA, Small Interfering , Animals , Mice , Durapatite/chemistry , Mouse Embryonic Stem Cells/metabolism , Mouse Embryonic Stem Cells/drug effects , RNA, Small Interfering/genetics , Gene Silencing , Biocompatible Materials/chemistry , Pluripotent Stem Cells/cytology , Pluripotent Stem Cells/metabolism , Nanoparticles/chemistry , Transduction, Genetic , RNA Interference , Gene Knockdown Techniques
6.
Cell Physiol Biochem ; 58(4): 292-310, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38973197

ABSTRACT

BACKGROUND/AIMS: Tactile perception relies on mechanoreceptors and nerve fibers, including c-fibers, Aß-fibers and Aδ-fibers. Schwann cells (SCs) play a crucial role in supporting nerve fibers, with non-myelinating SCs enwrapping c-fibers and myelinating SCs ensheathing Aß and Aδ fibers. Recent research has unveiled new functions for cutaneous sensory SCs, highlighting the involvement of nociceptive SCs in pain perception and Meissner corpuscle SCs in tactile sensation. Furthermore, Piezo2, previously associated with Merkel cell tactile sensitivity, has been identified in SCs. The goal of this study was to investigate the channels implicated in SC mechanosensitivity and the release process of neurotrophic factor secretion. METHODS: Immortalized IFRS1 SCs and human primary SCs generated two distinct subtypes of SCs: undifferentiated and differentiated SCs. Quantitative PCR was employed to evaluate the expression of differentiation markers and mechanosensitive channels, including TRP channels (TRPV4, TRPM7 and TRPA1) and Piezo channels (Piezo1 and Piezo2). To validate the functionality of specific mechanosensitive channels, Ca2+ imaging and electronic cell sizing experiments were conducted under hypotonic conditions, and inhibitors and siRNAs were used. Protein expression was assessed by Western blotting and immunostaining. Additionally, secretome analysis was performed to evaluate the release of neurotrophic factors in response to hypotonic stimulation, with BDNF, a representative trophic factor, quantified using ELISA. RESULTS: Induction of differentiation increased Piezo2 mRNA expression levels both in IFRS1 and in human primary SCs. Both cell types were responsive to hypotonic solutions, with differentiated SCs displaying a more pronounced response. Gd3+ and FM1-43 effectively inhibited hypotonicity-induced Ca2+ transients in differentiated SCs, implicating Piezo2 channels. Conversely, inhibitors of Piezo1 and TRPM7 (Dooku1 and NS8593, respectively) had no discernible impact. Moreover, Piezo2 in differentiated SCs appeared to participate in regulatory volume decreases (RVD) after cell swelling induced by hypotonic stimulation. A Piezo2 deficiency correlated with reduced RVD and prolonged cell swelling, leading to heightened release of the neurotrophic factor BDNF by upregulating the function of endogenously expressed Ca2+-permeable TRPV4. CONCLUSION: Our study unveils the mechanosensitivity of SCs and implicates Piezo2 channels in the release of neurotrophic factors from SCs. These results suggest that Piezo2 may contribute to RVD, thereby maintaining cellular homeostasis, and may also serve as a negative regulator of neurotrophic factor release. These findings underscore the need for further investigation into the role of Piezo2 in SC function and neurotrophic regulation.


Subject(s)
Brain-Derived Neurotrophic Factor , Cell Size , Ion Channels , Schwann Cells , Schwann Cells/metabolism , Schwann Cells/cytology , Humans , Ion Channels/metabolism , Cell Size/drug effects , Brain-Derived Neurotrophic Factor/metabolism , TRPV Cation Channels/metabolism , TRPV Cation Channels/genetics , RNA, Small Interfering/metabolism , Cell Differentiation , Cells, Cultured , RNA Interference , Calcium/metabolism , TRPA1 Cation Channel/metabolism , TRPA1 Cation Channel/genetics , Mechanotransduction, Cellular
7.
Arch Insect Biochem Physiol ; 116(3): e22125, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38973236

ABSTRACT

Insect pest control can be achieved by the application of RNA interference (RNAi), a key molecular tool in functional genomics. Whereas most RNAi research has focused on insect pests, few studies have been performed on natural enemies. Validating the efficacy of RNAi in natural enemies is crucial for assessing its safety and enabling molecular research on these organisms. Here, we assessed the efficacy of RNAi in the ladybird beetle Eriopis connexa Germar (Coleoptera: Coccinellidae), focusing on genes related to reproduction, such as vitellogenin (Vg) and its receptor (VgR). In the transcriptome of E. connexa, we found one VgR (EcVgR) and two Vg genes (EcVg1 and EcVg2). These genes have been validated by in silico analyses of functional domains and evolutionary relationships. Five-day-old females were injected with 500 ng/µL of a specific double-stranded RNA (dsRNA) (dsEcVg1, dsEcVg2, or dsEcVgR) for RNAi tests, while nonspecific dsRNA (dsGFP or dsAgCE8.1) was used as a control. Interestingly, dsEcVg2 was able to knockdown both Vg genes, while dsEcVg1 could silence only EcVg1. Additionally, the viability of the eggs was significantly reduced when both Vg genes were knocked down at the same time (after treatment with dsEcVg2 or "dsEcVg1+dsEcVg2"). Ultimately, malformed, nonviable eggs were produced when EcVgR was silenced. Interestingly, no dsRNA treatment had an impact on the quantity of eggs laid. Therefore, the feasibility of RNAi in E. connexa has been confirmed, suggesting that this coccinellid is an excellent Neotropical model for molecular research on natural enemies and for studying RNAi nontarget effects.


Subject(s)
Coleoptera , Gene Knockdown Techniques , RNA Interference , Animals , Coleoptera/genetics , Female , Vitellogenins/genetics , Vitellogenins/metabolism , Insect Proteins/genetics , Insect Proteins/metabolism , Reproduction/genetics , RNA, Double-Stranded/genetics , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Egg Proteins/genetics , Egg Proteins/metabolism , Pest Control, Biological
8.
PLoS One ; 19(7): e0305207, 2024.
Article in English | MEDLINE | ID: mdl-38968330

ABSTRACT

Increasing reports of insecticide resistance continue to hamper the gains of vector control strategies in curbing malaria transmission. This makes identifying new insecticide targets or alternative vector control strategies necessary. CLassifier of Essentiality AcRoss EukaRyote (CLEARER), a leave-one-organism-out cross-validation machine learning classifier for essential genes, was used to predict essential genes in Anopheles gambiae and selected predicted genes experimentally validated. The CLEARER algorithm was trained on six model organisms: Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, Mus musculus, Saccharomyces cerevisiae and Schizosaccharomyces pombe, and employed to identify essential genes in An. gambiae. Of the 10,426 genes in An. gambiae, 1,946 genes (18.7%) were predicted to be Cellular Essential Genes (CEGs), 1716 (16.5%) to be Organism Essential Genes (OEGs), and 852 genes (8.2%) to be essential as both OEGs and CEGs. RNA interference (RNAi) was used to validate the top three highly expressed non-ribosomal predictions as probable vector control targets, by determining the effect of these genes on the survival of An. gambiae G3 mosquitoes. In addition, the effect of knockdown of arginase (AGAP008783) on Plasmodium berghei infection in mosquitoes was evaluated, an enzyme we computationally inferred earlier to be essential based on chokepoint analysis. Arginase and the top three genes, AGAP007406 (Elongation factor 1-alpha, Elf1), AGAP002076 (Heat shock 70kDa protein 1/8, HSP), AGAP009441 (Elongation factor 2, Elf2), had knockdown efficiencies of 91%, 75%, 63%, and 61%, respectively. While knockdown of HSP or Elf2 significantly reduced longevity of the mosquitoes (p<0.0001) compared to control groups, Elf1 or arginase knockdown had no effect on survival. However, arginase knockdown significantly reduced P. berghei oocytes counts in the midgut of mosquitoes when compared to LacZ-injected controls. The study reveals HSP and Elf2 as important contributors to mosquito survival and arginase as important for parasite development, hence placing them as possible targets for vector control.


Subject(s)
Anopheles , Malaria , Mosquito Vectors , RNA Interference , Animals , Anopheles/genetics , Anopheles/parasitology , Malaria/prevention & control , Malaria/transmission , Malaria/parasitology , Mosquito Vectors/genetics , Mosquito Vectors/parasitology , Computational Biology/methods , Mice , Humans , Mosquito Control/methods , Genes, Essential , Female , Plasmodium berghei/genetics
9.
Arch Insect Biochem Physiol ; 116(3): e22131, 2024 Jul.
Article in English | MEDLINE | ID: mdl-39016064

ABSTRACT

Bacillus thuringiensis (Bt) is widely used as a biopesticide worldwide. To date, at least eight pest species have been found to be resistant to Bt in the field. As the first pest that was reported having resistance to Bt in the field, considerable research has been done on the mechanisms of Bt resistance in Plutella xylostella. However, whether the acquisition of Bt resistance by P. xylostella comes at a fitness cost is also a valuable question. In this study, Aminopeptidase-N 2 (APN2), a Cry toxin receptor gene of P. xylostella, was knocked down by RNA interference, resulting in improved resistance to Cry1Ac. It was also found that larval mortality of APN2 knockdown P. xylostella was significantly higher than that of the control, while the pupation rate, pupal weight, eclosion rate, fecundity (egg/female), hatchability, and female adult longevity were significantly lower in APN2 knockdown P. xylostella than in the control. These results illustrate that if Cry1Ac resistance was obtained only through the reduction of APN2 expression, P. xylostella would need to incur some fitness costs for it.


Subject(s)
Bacillus thuringiensis Toxins , Bacterial Proteins , CD13 Antigens , Endotoxins , Hemolysin Proteins , Insecticide Resistance , Larva , Moths , Animals , Endotoxins/pharmacology , Moths/genetics , Moths/growth & development , Moths/enzymology , Hemolysin Proteins/pharmacology , Insecticide Resistance/genetics , CD13 Antigens/metabolism , CD13 Antigens/genetics , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Larva/growth & development , Larva/genetics , Female , RNA Interference , Insect Proteins/genetics , Insect Proteins/metabolism
10.
Cells ; 13(13)2024 Jun 28.
Article in English | MEDLINE | ID: mdl-38994969

ABSTRACT

During infection, adenoviruses inhibit the cellular RNA interference (RNAi) machinery by saturating the RNA-induced silencing complex (RISC) of the host cells with large amounts of virus-derived microRNAs (mivaRNAs) that bind to the key component of the complex, Argonaute 2 (AGO2). In the present study, we investigated AGO2 as a prominent player at the intersection between human adenovirus 5 (HAdV-5) and host cells because of its ability to interfere with the HAdV-5 life cycle. First, the ectopic expression of AGO2 had a detrimental effect on the ability of the virus to replicate. In addition, in silico and in vitro analyses suggested that endogenous microRNAs (miRNAs), particularly hsa-miR-7-5p, have similar effects. This miRNA was found to be able to target the HAdV-5 DNA polymerase mRNA. The inhibitory effect became more pronounced upon overexpression of AGO2, likely due to elevated AGO2 levels, which abolished the competition between cellular miRNAs and mivaRNAs for RISC incorporation. Collectively, our data suggest that endogenous miRNAs would be capable of significantly inhibiting viral replication if adenoviruses had not developed a mechanism to counteract this function. Eventually, AGO2 overexpression-mediated relief of the RISC-saturating action of mivaRNAs strongly enhanced the effectiveness of artificial miRNAs (amiRNAs) directed against the HAdV-5 preterminal protein (pTP) mRNA, suggesting a substantial benefit of co-expressing amiRNAs and AGO2 in RNAi-based strategies for the therapeutic inhibition of adenoviruses.


Subject(s)
Adenoviruses, Human , Argonaute Proteins , MicroRNAs , Virus Replication , Argonaute Proteins/metabolism , Argonaute Proteins/genetics , Humans , MicroRNAs/genetics , MicroRNAs/metabolism , Adenoviruses, Human/genetics , Adenoviruses, Human/physiology , RNA-Induced Silencing Complex/metabolism , RNA-Induced Silencing Complex/genetics , RNA Interference , HEK293 Cells
11.
PLoS One ; 19(7): e0306611, 2024.
Article in English | MEDLINE | ID: mdl-38995904

ABSTRACT

In insects, biogenic amines function as neurotransmitters, neuromodulators, and neurohormones, influencing various behaviors, including those related to reproduction such as response to sex pheromones, oogenesis, oviposition, courtship, and mating. Octopamine (OA), an analog of the vertebrate norepinephrine, is synthesized from the biogenic amine tyramine by the enzyme tyramine ß-hydroxylase (TßH). Here, we investigate the mechanisms and target genes underlying the role of OA in successful reproduction in females of Rhodnius prolixus, a vector of Chagas disease, by downregulating TßH mRNA expression (thereby reducing OA content) using RNA interference (RNAi), and in vivo and ex vivo application of OA. Injection of females with dsTßH impairs successful reproduction at least in part, by decreasing the transcript expression of enzymes involved in juvenile hormone biosynthesis, the primary hormone for oogenesis in R. prolixus, thereby interfering with oogenesis, ovulation and oviposition. This study offers valuable insights into the involvement of OA for successful reproduction in R. prolixus females. Understanding the reproductive biology of R. prolixus is crucial in a medical context for controlling the spread of the disease.


Subject(s)
Octopamine , Oogenesis , Oviposition , Reproduction , Rhodnius , Animals , Rhodnius/genetics , Rhodnius/physiology , Rhodnius/metabolism , Octopamine/metabolism , Female , RNA Interference , Mixed Function Oxygenases/metabolism , Mixed Function Oxygenases/genetics , Juvenile Hormones/metabolism , Ovulation , Insect Proteins/metabolism , Insect Proteins/genetics
12.
J Insect Sci ; 24(4)2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38958929

ABSTRACT

The potential role of the juvenile hormone receptor gene (methoprene-tolerant, Met) in reproduction of Coccinella septempunctata L. (Coleoptera: Coccinellidae)(Coleoptera: Coccinellidae), was investigated by cloning, analyzing expression profiles by quantitative real-time PCR, and via RNA interference (RNAi). CsMet encoded a 1518-bp open reading frames with a predicted protein product of 505 amino acids; the latter contained 2 Per-Arnt-Sim repeat profile at amino acid residues 30-83 and 102-175. CsMet was expressed in different C. septempunctata larvae developmental stages and was most highly expressed in third instar. CsMet expression in female adults gradually increased from 20 to 30 d, and expression levels at 25 and 30 d were significantly higher than levels at 1-15 d. CsMet expression in 20-d-old male adults was significantly higher than in males aged 1-15 d. CsMet expression levels in fat body tissues of male and female adults were significantly higher than expression in the head, thorax, and reproductive system. At 5 and 10 d after CsMet-dsRNA injection, CsMet expression was significantly lower than the controls by 75.05% and 58.38%, respectively. Ovary development and vitellogenesis in C. septempunctata injected with CsMet-dsRNA were significantly delayed and fewer mature eggs were produced. This study provides valuable information for the large-scale rearing of C. septempunctata.


Subject(s)
Cloning, Molecular , Coleoptera , Insect Proteins , Animals , Coleoptera/genetics , Coleoptera/growth & development , Coleoptera/metabolism , Female , Male , Insect Proteins/genetics , Insect Proteins/metabolism , Larva/growth & development , Larva/genetics , Larva/metabolism , Amino Acid Sequence , RNA Interference , Phylogeny
13.
Nutrients ; 16(11)2024 May 26.
Article in English | MEDLINE | ID: mdl-38892556

ABSTRACT

Sphingosine-1-phosphate lyase (SPL) resides at the endpoint of the sphingolipid metabolic pathway, catalyzing the irreversible breakdown of sphingosine-1-phosphate. Depletion of SPL precipitates compromised muscle morphology and function; nevertheless, the precise mechanistic underpinnings remain elusive. Here, we elucidate a model of SPL functional deficiency in Caenorhabditis elegans using spl-1 RNA interference. Within these SPL-deficient nematodes, we observed diminished motility and perturbed muscle fiber organization, correlated with the accumulation of sphingoid bases, their phosphorylated forms, and ceramides (collectively referred to as the "sphingolipid rheostat"). The disturbance in mitochondrial morphology was also notable, as SPL functional loss resulted in heightened levels of reactive oxygen species. Remarkably, the administration of the antioxidant N-acetylcysteine (NAC) ameliorates locomotor impairment and rectifies muscle fiber disarray, underscoring its therapeutic promise for ceramide-accumulation-related muscle disorders. Our findings emphasize the pivotal role of SPL in preserving muscle integrity and advocate for exploring antioxidant interventions, such as NAC supplementation, as prospective therapeutic strategies for addressing muscle function decline associated with sphingolipid/ceramide metabolism disruption.


Subject(s)
Acetylcysteine , Aldehyde-Lyases , Caenorhabditis elegans , Ceramides , Sphingolipids , Animals , Caenorhabditis elegans/drug effects , Acetylcysteine/pharmacology , Ceramides/metabolism , Aldehyde-Lyases/metabolism , Sphingolipids/metabolism , Reactive Oxygen Species/metabolism , Antioxidants/pharmacology , Antioxidants/metabolism , Muscles/drug effects , Muscles/metabolism , RNA Interference , Sphingosine/analogs & derivatives , Sphingosine/metabolism
14.
Sci Rep ; 14(1): 14111, 2024 06 19.
Article in English | MEDLINE | ID: mdl-38898092

ABSTRACT

Legumin A is a seed storage protein that provides nutrients for seed germination. The purpose of this study was to describe the structure and expression pattern of the EuLEGA gene in Eucommia ulmoides Oliver (E. ulmoides) and to infer its functional role. The 1287 bp coding sequence of the EuLEGA CDS of the EuLEGA gene, encoding a protein containing 428 amino acid residues, was cloned. The structure predicted that the protein belonged to the RmlC (deoxythymidine diphosphates, dTDP)-4-dehydrorhamnose 3,5-epimerase)-like cupin conserved domain family, which contains both RmlC, a key enzyme for the synthesis of rhamnose and legumin A. The overexpression (OE) vector of the EuLEGA gene was constructed and genetically transformed into tobacco and E. ulmoides; the RNA interference (RNAi) vector of the EuLEGA gene was constructed and genetically transformed into E. ulmoides; and the contents of legumin A and rhamnose were detected. The results showed that the EuLEGA gene could significantly increase the content of legumin A in transgenic tobacco leaves and transgenic E. ulmoides regenerative buds, and the OE of this gene in E. ulmoides could promote an increase in rhamnose content. RNAi caused a significant decrease in the legumin A content in the regenerated buds of E. ulmoides. These was a significant increase in legumin A in the transgenic tobacco seeds, and these results indicate that the expression of the EuLEGA gene is closely related to the accumulation of legumin A. Subcellular localization studies revealed that EuLEGA is localized to the cytoplasm with the vacuolar membrane. Analysis of the EuLEGA gene expression data revealed that the expression level of the EuLEGA gene in the samaras was significantly greater than that in the leaves and stems. In addition, the study also demonstrated that GA3 can upregulate the expression levels of the EuLEGA gene, while ABA and MeJA can downregulate its expression levels.


Subject(s)
Cloning, Molecular , Eucommiaceae , Gene Expression Regulation, Plant , Plant Proteins , Plants, Genetically Modified , Plants, Genetically Modified/genetics , Eucommiaceae/genetics , Eucommiaceae/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Legumins/genetics , Legumins/metabolism , Nicotiana/genetics , Nicotiana/metabolism , Rhamnose/metabolism , RNA Interference
15.
Int J Mol Sci ; 25(12)2024 Jun 20.
Article in English | MEDLINE | ID: mdl-38928507

ABSTRACT

The necrotrophic plant pathogenic fungus Botrytis cinerea (Pers., 1794), the causative agent of gray mold disease, causes significant losses in agricultural production. Control of this fungal pathogen is quite difficult due to its wide host range and environmental persistence. Currently, the management of the disease is still mainly based on chemicals, which can have harmful effects not only on the environment and on human health but also because they favor the development of strains resistant to fungicides. The flexibility and plasticity of B. cinerea in challenging plant defense mechanisms and its ability to evolve strategies to escape chemicals require the development of new control strategies for successful disease management. In this review, some aspects of the host-pathogen interactions from which novel and sustainable control strategies could be developed (e.g., signaling pathways, molecules involved in plant immune mechanisms, hormones, post-transcriptional gene silencing) were analyzed. New biotechnological tools based on the use of RNA interference (RNAi) are emerging in the crop protection scenario as versatile, sustainable, effective, and environmentally friendly alternatives to the use of chemicals. RNAi-based fungicides are expected to be approved soon, although they will face several challenges before reaching the market.


Subject(s)
Botrytis , Host-Pathogen Interactions , Plant Diseases , RNA Interference , Botrytis/pathogenicity , Plant Diseases/microbiology , Plant Diseases/prevention & control , Host-Pathogen Interactions/genetics , Fungicides, Industrial/pharmacology
16.
Mol Biol (Mosk) ; 58(1): 99-120, 2024.
Article in Russian | MEDLINE | ID: mdl-38943583

ABSTRACT

Regulation of retrotransposon activity in somatic tissues is a complex mechanism that has still not been studied in detail. It is strongly believed that siRNA interference is main mechanism of retrotransposon activity regulation outside the gonads, but recently was demonstrated that piRNA interference participates in retrotransposon repression during somatic tissue development. In this work, using RT-PCR, we demonstrated that during ontogenesis piRNA interference determinates retrotransposon expression level on imago stage and retrotransposons demonstrate tissue-specific expression. The major factor of retrotransposon tissue-specific expression is presence of transcription factor binding sites in their regulatory regions.


Subject(s)
Drosophila melanogaster , RNA, Small Interfering , Retroelements , Animals , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Retroelements/genetics , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Gene Expression Regulation, Developmental , Transcription Factors/genetics , Transcription Factors/metabolism , Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Organ Specificity , Binding Sites , RNA Interference
18.
Life Sci ; 351: 122822, 2024 Aug 15.
Article in English | MEDLINE | ID: mdl-38866221

ABSTRACT

Malaria is a major public health concern. The development of parasite-based vaccine RTS/AS01 has some therapeutic value but its lower efficacy is one of the major limitations. Mosquito-based transmission-blocking vaccines could have a higher potential for parasite inhibition within the mosquitoes. Several genes of mosquito midgut, salivary gland, hemolymph, etc. get activate in response to the Plasmodium-infected blood and helps in parasite invasion directly or indirectly inside the mosquito. The studies of such genes provided a new insight into developing the more efficient vaccines. In the field of malaria genetics research, RNAi has become an innovative strategy used to identify mosquito candidate genes for transmission-blocking vaccines. This review targeted the gene studies that have been conducted in the period 2000-2023 in different malaria vectors against different malarial parasites using the RNAi approach to reveal mosquito novel gene candidates for vaccine development.


Subject(s)
Anopheles , Malaria Vaccines , Malaria , Mosquito Vectors , RNA Interference , Animals , Malaria Vaccines/immunology , Malaria Vaccines/genetics , Anopheles/parasitology , Anopheles/genetics , Malaria/prevention & control , Malaria/transmission , Humans , Mosquito Vectors/parasitology , Mosquito Vectors/genetics
19.
Science ; 384(6703): 1398-1401, 2024 Jun 28.
Article in English | MEDLINE | ID: mdl-38935704

ABSTRACT

Insecticides made of RNA could offer a safer and more targeted weapon against crop pests.


Subject(s)
Coleoptera , Crops, Agricultural , Insecticides , RNA Interference , Animals , Crops, Agricultural/parasitology , RNA
20.
Proc Natl Acad Sci U S A ; 121(26): e2322927121, 2024 Jun 25.
Article in English | MEDLINE | ID: mdl-38885386

ABSTRACT

RNA interference (RNAi) is more efficient in coleopteran insects than other insects. StaufenC (StauC), a coleopteran-specific double-stranded RNA (dsRNA)-binding protein, is required for efficient RNAi in coleopterans. We investigated the function of StauC in the intracellular transport of dsRNA into the cytosol, where dsRNA is digested by Dicer enzymes and recruited by Argonauts to RNA-induced silencing complexes. Confocal microscopy and cellular organelle fractionation studies have shown that dsRNA is trafficked through the endoplasmic reticulum (ER) in coleopteran Colorado potato beetle (CPB) cells. StauC is localized to the ER in CPB cells, and StauC-knockdown caused the accumulation of dsRNA in the ER and a decrease in the cytosol, suggesting that StauC plays a key role in the intracellular transport of dsRNA through the ER. Using immunoprecipitation, we showed that StauC is required for dsRNA interaction with ER proteins in the ER-associated protein degradation (ERAD) pathway, and these interactions are required for RNAi in CPB cells. These results suggest that StauC works with the ERAD pathway to transport dsRNA through the ER to the cytosol. This information could be used to develop dsRNA delivery methods aimed at improving RNAi.


Subject(s)
Coleoptera , Cytosol , Endoplasmic Reticulum-Associated Degradation , Endoplasmic Reticulum , RNA, Double-Stranded , RNA-Binding Proteins , Animals , Endoplasmic Reticulum/metabolism , RNA, Double-Stranded/metabolism , Cytosol/metabolism , Coleoptera/metabolism , Coleoptera/genetics , Endoplasmic Reticulum-Associated Degradation/physiology , RNA-Binding Proteins/metabolism , RNA-Binding Proteins/genetics , Insect Proteins/metabolism , Insect Proteins/genetics , RNA Interference , Biological Transport
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