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1.
Biochem Biophys Res Commun ; 492(2): 282-288, 2017 10 14.
Article in English | MEDLINE | ID: mdl-28837806

ABSTRACT

Rhodospirillum rubruml-asparaginase mutant RrA E149R, V150P, F151T (RrA) was previously identified to down-regulate telomerase activity along with catalyzing the hydrolysis of l-asparagine. The aim of this study was to define the effect of prolonged RrA exposure on telomerase activity, maintenance of telomeres and proliferation of cancer cells in vitro and in vivo. RrA could inhibit telomerase activity in SCOV-3, SkBr-3 and A549 human cancer cell lines due to its ability to down-regulate the expression of telomerase catalytic subunit hTERT. Telomerase activity in treated cells did not exceeded 29.63 ± 12.3% of control cells. Continuous RrA exposure of these cells resulted in shortening of telomeres followed by cell death in vitro. Using real time PCR we showed that length of telomeres in SCOV-3 cells has been gradually decreasing from 10105 ± 2530 b.p. to 1233 ± 636 b.p. after 35 days of cultivation. RrA treatment of xenograft models in vivo showed slight inhibition of tumor growth accompanied with 49.5-53.3% of decrease in hTERT expression in the all tumors. However down-regulation of hTERT expression, inhibition of telomerase activity and the loss of telomeres was significant in response to RrA administration in xenograft models. These results should facilitate further investigations of RrA as a potent therapeutic protein.


Subject(s)
Antineoplastic Agents/therapeutic use , Asparaginase/therapeutic use , Down-Regulation/drug effects , Enzyme Inhibitors/therapeutic use , Neoplasms/drug therapy , Rhodospirillum/enzymology , Telomerase/genetics , Animals , Asparaginase/genetics , Cell Line, Tumor , Female , Humans , Mice, Inbred BALB C , Mice, Nude , Neoplasms/genetics , Neoplasms/pathology , Point Mutation , Rhodospirillum/genetics , Telomere Shortening/drug effects
2.
Int J Syst Evol Microbiol ; 64(Pt 4): 1154-1159, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24368693

ABSTRACT

The genus Rhodospirillum is represented by four species, with three of them showing phylogenetic divergence compared to the type species, Rhodospirillum rubrum. Differences in the major diagnostic properties such as internal photosynthetic membranes, quinones, fatty acids, carotenoid composition and a few other phenotypic properties warrant the reclassification of members of this genus. Resultantly, a new genus, Pararhodospirillum gen. nov., is proposed based on the analysis of nine strains to accommodate Rhodospirillum photometricum, Rhodospirillum sulfurexigens and Rhodospirillum oryzae as Pararhodospirillum photometricum comb. nov., Pararhodospirillum sulfurexigens comb. nov. and Pararhodospirillum oryzae comb. nov., respectively. The type species of the genus is Pararhodospirillum photometricum comb. nov. An emended description of the genus Rhodospirillum is also proposed.


Subject(s)
Phylogeny , Rhodospirillum/classification , Carotenoids/chemistry , DNA, Bacterial/genetics , Fatty Acids/chemistry , Molecular Sequence Data , RNA, Ribosomal, 16S/genetics , Rhodospirillum/genetics , Ubiquinone/chemistry
3.
Int J Syst Evol Microbiol ; 63(Pt 8): 3050-3055, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23416569

ABSTRACT

A reddish-brown bacterium, designated strain JA318(T), was purified from a photoheterotrophic enrichment culture obtained from the rhizosphere soil of paddy. Cells of strain JA318(T) are spiral shaped, Gram-stain-negative and motile by means of amphitrichous flagella. Strain JA318(T) has no NaCl requirement for growth but can tolerate up to 1.5 % (w/v) NaCl. Internal photosynthetic membranes are present as lamellar stacks. Photoorganoheterotrophy is the only growth mode observed. Strain JA318(T) contains bacteriochlorophyll a, lycopene and rhodopin as major carotenoids. Thiamine, niacin and para-aminobenzoic acid (PABA) are required as growth factors. Major fatty acids are C18 : 1ω7c and C16 : 0. Ubiquinone-8 and rhodoquinone-8 are the observed quinones. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified aminolipid are the major polar lipids in strain JA318(T). Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain JA318(T) clustered with species of the genus Rhodospirillum which belongs to the class Alphaproteobacteria. The highest sequence similarity of strain JA318(T) was found with Rhodospirillum sulfurexigens JA143(T) (99.9 %). The DNA-DNA reassociation values of strain JA318(T) with Rsp. sulfurexigens JA143(T) and Rhodospirillum photometricum DSM 122(T) were 52 ± 2 % and 45 ± 1 %, respectively. The genomic DNA G+C content of strain JA318(T) was 60.2 mol%. Based on the morphological, physiological, chemotaxonomical and molecular evidence, strain JA318(T) is significantly different from the type strains of species of the genus Rhodospirillum, of the family Rhodospirillaceae, and it is proposed that the strain be classified as a representative of a novel species for which the name Rhodospirillum oryzae sp. nov. is proposed. The type strain is JA318(T) (= KCTC 5960(T) = NBRC 107573(T)).


Subject(s)
Phylogeny , Rhizosphere , Rhodospirillum/classification , Soil Microbiology , Bacterial Typing Techniques , Bacteriochlorophyll A/analysis , Base Composition , Carotenoids/analysis , DNA, Bacterial/genetics , Fatty Acids/analysis , India , Lycopene , Molecular Sequence Data , Nucleic Acid Hybridization , Oryza , RNA, Ribosomal, 16S/genetics , Rhodospirillum/genetics , Rhodospirillum/isolation & purification , Sequence Analysis, DNA , Ubiquinone/analogs & derivatives , Ubiquinone/analysis
4.
J Bacteriol ; 194(9): 2380, 2012 May.
Article in English | MEDLINE | ID: mdl-22493194

ABSTRACT

Here, we present the shotgun genome sequence of the purple photosynthetic bacterium Rhodospirillum photometricum DSM122. The photosynthetic apparatus of this bacterium has been particularly well studied by microscopy. The knowledge of the genome of this oversize bacterium will allow us to compare it with the other purple bacterial organisms to follow the evolution of the photosynthetic apparatus.


Subject(s)
Genome, Bacterial , Photosynthesis/physiology , Rhodospirillum/genetics , Chromosomes, Bacterial , DNA, Bacterial/genetics , Gene Expression Regulation, Bacterial , Molecular Sequence Data
5.
Proc Natl Acad Sci U S A ; 108(23): 9455-9, 2011 Jun 07.
Article in English | MEDLINE | ID: mdl-21606335

ABSTRACT

Interaction forces of membrane protein subunits are of importance in their structure, assembly, membrane insertion, and function. In biological membranes, and in the photosynthetic apparatus as a paradigm, membrane proteins fulfill their function by ensemble actions integrating a tight assembly of several proteins. In the bacterial photosynthetic apparatus light-harvesting complexes 2 (LH2) transfer light energy to neighboring tightly associated core complexes, constituted of light-harvesting complexes 1 (LH1) and reaction centers (RC). While the architecture of the photosynthetic unit has been described, the forces and energies assuring the structural and functional integrity of LH2, the assembly of LH2 complexes, and how LH2 interact with the other proteins in the supramolecular architecture are still unknown. Here we investigate the molecular forces of the bacterial LH2 within the native photosynthetic membrane using atomic force microscopy single-molecule imaging and force measurement in combination. The binding between LH2 subunits is fairly weak, of the order of k(B)T, indicating the importance of LH2 ring architecture. In contrast LH2 subunits are solid with a free energy difference of 90 k(B)T between folded and unfolded states. Subunit α-helices unfold either in one-step, α- and ß-polypeptides unfold together, or sequentially. The unfolding force of transmembrane helices is approximately 150 pN. In the two-step unfolding process, the ß-polypeptide is stabilized by the molecular environment in the membrane. Hence, intermolecular forces influence the structural and functional integrity of LH2.


Subject(s)
Bacterial Proteins/metabolism , Cell Membrane/metabolism , Light-Harvesting Protein Complexes/metabolism , Photosynthesis , Algorithms , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Kinetics , Light-Harvesting Protein Complexes/chemistry , Light-Harvesting Protein Complexes/genetics , Microscopy, Atomic Force , Models, Molecular , Molecular Sequence Data , Periplasm/metabolism , Protein Binding , Protein Structure, Secondary , Protein Unfolding , Rhodospirillum/genetics , Rhodospirillum/metabolism , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Spectrophotometry
6.
BMC Microbiol ; 10: 281, 2010 Nov 09.
Article in English | MEDLINE | ID: mdl-21062468

ABSTRACT

BACKGROUND: Rhodocista centenaria is a phototrophic α-proteobacterium exhibiting a phototactic behaviour visible as colony movement on agar plates directed to red light. As many phototrophic purple bacteria R. centenaria possesses a soluble photoactive yellow protein (Pyp). It exists as a long fusion protein, designated Ppr, consisting of three domains, the Pyp domain, a putative bilin binding domain (Bbd) and a histidine kinase domain (Pph). The Ppr protein is involved in the regulation of polyketide synthesis but it is still unclear, how this is connected to phototaxis and chemotaxis. RESULTS: To elucidate the possible role of Ppr and Pph in the chemotactic network we studied the interaction with chemotactic proteins in vitro as well as in vivo. Matrix-assisted coelution experiments were performed to study the possible communication of the different putative binding partners. The kinase domain of the Ppr protein was found to interact with the chemotactic linker protein CheW. The formation of this complex was clearly ATP-dependent. Further results indicated that the Pph histidine kinase domain and CheW may form a complex with the chemotactic kinase CheAY suggesting a role of Ppr in the chemotaxis signalling pathway. In addition, when Ppr or Pph were expressed in Escherichia coli, the chemotactic response of the cells was dramatically affected. CONCLUSIONS: The Ppr protein of Rhodocista centenaria directly interacts with the chemotactic protein CheW. This suggests a role of the Ppr protein in the regulation of the chemotactic response in addition to its role in chalcone synthesis.


Subject(s)
Bacterial Proteins/metabolism , Chemotaxis , Photoreceptors, Microbial/metabolism , Rhodospirillum/physiology , Signal Transduction , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Molecular Sequence Data , Photoreceptors, Microbial/chemistry , Photoreceptors, Microbial/genetics , Protein Binding , Protein Structure, Tertiary , Rhodospirillum/chemistry , Rhodospirillum/genetics , Sequence Alignment
7.
Int J Syst Evol Microbiol ; 58(Pt 12): 2917-20, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19060082

ABSTRACT

A Gram-negative, spiral-shaped, phototrophic, purple non-sulfur bacterial strain, JA143(T), was isolated from a freshwater habitat. Strain JA143(T) was motile by means of bipolar tufts of flagella. Intracellular photosynthetic membranes are of the lamellar stacked type. Bacteriochlorophyll a and carotenoids of the spirilloxanthin series with rhodovibrin are present as photosynthetic pigments. Thiamine and a reduced sulfur source are required for growth. Phylogenetic analysis on the basis of 16S rRNA gene sequences showed that strain JA143(T) clusters with species of the genus Rhodospirillum, belonging to the class Alphaproteobacteria. The highest sequence similarities of strain JA143(T) were found with the type strains of Rhodospirillum rubrum (95.6 %) and Rhodospirillum photometricum (95.7 %). Based on 16S rRNA gene sequence analysis and morphological and physiological characteristics, strain JA143(T) was significantly different from the other two recognized species of the genus Rhodospirillum and represents a novel species, for which the name Rhodospirillum sulfurexigens sp. nov. is proposed. The type strain is JA143(T) (=DSM 19785(T) =NBRC 104433(T)).


Subject(s)
Rhodospirillum/classification , Rhodospirillum/physiology , Sulfur/metabolism , Molecular Sequence Data , Phototrophic Processes , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodospirillum/cytology , Rhodospirillum/genetics , Rhodospirillum/growth & development , Species Specificity
8.
Biotechnol Bioeng ; 100(2): 223-30, 2008 Jun 01.
Article in English | MEDLINE | ID: mdl-18078291

ABSTRACT

Rapid recovery, immobilization, and silica encapsulation of a dual-fusion enzyme was achieved by using iminodiacetic acid (IDA) modified magnetic nanoparticle as a carrier. D-amino acid oxidase (DAAO) of Rhodosporidium toruloides was used as a model enzyme in which a silica-precipitating peptide R5 and a metal ion complexing peptide (His)(6) were fused to its N- and C-terminal, respectively. After charging the magnetic particle with Cu(2+), the dual-fusion DAAO of 0.43 g could be directly recovered from the recombinant E. coli crude extract and immobilized on 1 g of the magnetic particle. Once in contact with hydrolyzed tetramethoxysilane (TMOS), the homogeneously dispersed immobilized dual-fusion DAAO was biosilicificated to form aggregates with size about 50 microm. The silica-encapsulated immobilized DAAO demonstrated a pyruvic acid production rate comparable with that of the naked immobilized DAAO in five repeated batch reactions when D-alanine was used as substrate. Furthermore, 85% of its activity remained after incubation at 60 degrees C for 1 h while the naked immobilized DAAO lost all its activity. This process provides the advantages that recombinant fusion enzyme can be directly recovered from crude extract, silica encapsulation protects the enzyme from leakage and denaturation, and the enzyme activity can be easily retrieved by applying a magnetic field.


Subject(s)
D-Amino-Acid Oxidase/chemistry , D-Amino-Acid Oxidase/metabolism , Enzymes, Immobilized/chemistry , Nanoparticles/chemistry , Recombinant Fusion Proteins/chemistry , Rhodospirillum/enzymology , Silicon Dioxide/chemistry , Chemical Fractionation/methods , D-Amino-Acid Oxidase/genetics , Enzyme Activation , Enzyme Stability , Enzymes, Immobilized/genetics , Magnetics , Nanoparticles/ultrastructure , Particle Size , Protein Engineering/methods , Rhodospirillum/genetics
9.
Appl Environ Microbiol ; 72(6): 3887-95, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16751493

ABSTRACT

Maras salterns are located 3,380 m above sea level in the Peruvian Andes. These salterns consist of more than 3,000 little ponds which are not interconnected and act as crystallizers where salt precipitates. These ponds are fed by hypersaline spring water rich in sodium and chloride. The microbiota inhabiting these salterns was examined by fluorescence in situ hybridization (FISH), 16S rRNA gene clone library analysis, and cultivation techniques. The total counts per milliliter in the ponds were around 2 x 10(6) to 3 x 10(6) cells/ml, while the spring water contained less than 100 cells/ml and did not yield any detectable FISH signal. The microbiota inhabiting the ponds was dominated (80 to 86% of the total counts) by Archaea, while Bacteria accounted for 10 to 13% of the 4',6'-diamidino-2-phenylindole (DAPI) counts. A total of 239 16S rRNA gene clones were analyzed (132 Archaea clones and 107 Bacteria clones). According to the clone libraries, the archaeal assemblage was dominated by microorganisms related to the cosmopolitan square archaeon "Haloquadra walsbyi," although a substantial number of the sequences in the libraries (31% of the 16S rRNA gene archaeal clones) were related to Halobacterium sp., which is not normally found in clone libraries from solar salterns. All the bacterial clones were closely related to each other and to the gamma-proteobacterium "Pseudomonas halophila" DSM 3050. FISH analysis with a probe specific for this bacterial assemblage revealed that it accounted for 69 to 76% of the total bacterial counts detected with a Bacteria-specific probe. When pond water was used to inoculate solid media containing 25% total salts, both extremely halophilic Archaea and Bacteria were isolated. Archaeal isolates were not related to the isolates in clone libraries, although several bacterial isolates were very closely related to the "P. halophila" cluster found in the libraries. As observed for other hypersaline environments, extremely halophilic bacteria that had ecological relevance seemed to be easier to culture than their archaeal counterparts.


Subject(s)
Fresh Water/microbiology , Genetic Variation , Altitude , DNA, Archaeal/genetics , DNA, Archaeal/isolation & purification , DNA, Bacterial/genetics , DNA, Bacterial/isolation & purification , Halobacterium/classification , Halobacterium/genetics , Halobacterium/isolation & purification , Hydrogen-Ion Concentration , Molecular Sequence Data , Peru , Phylogeny , Pseudomonas/classification , Pseudomonas/genetics , Pseudomonas/isolation & purification , Rhodospirillum/classification , Rhodospirillum/genetics , Water Microbiology
10.
Biochemistry ; 42(51): 15114-23, 2003 Dec 30.
Article in English | MEDLINE | ID: mdl-14690421

ABSTRACT

The LH1 and LH2 complexes of Rhodobacter sphaeroides form ring structures of 16 and 9 protomers, respectively, comprising alpha and beta polypeptides, bacteriochlorophylls (Bchl), and carotenoids. Using the LH2 complex as a starting point, two chimeric LH complexes were constructed incorporating the alphaC-terminal domain of either the Rb. sphaeroides LH1 complex or the Rhodospirillum molischianum LH2 complex. The LH1 domain swap produced a new red-shifted component that comprised approximately 30% of the total absorbance. In the LH1alpha C-terminal mutant this new red-shifted species acts as the terminal emitter, with the new emission maximum located 10 nm further to the red than for the WT. Raman spectroscopy indicates that a fraction of the B850 Bchls is involved in relatively weak H-bonds, possibly involving the alphaTrp(+11) residue within the new alphaC-terminus, consistent with a more LH1-like character for one of the Bchls. The CD data indicate that the domain swaps have perturbed the native arrangement of the B850 Bchls, including the site energy difference between the alpha- and beta-bound Bchls. Thus, the normal energetic structure of the ring system has been disrupted, with one component blue shifted due to the presumed loss of an H-bond donor and the other red shifted by the influence of the new alphaC-terminal domain. The dichotomous response of the mutants to the carotenoids incorporated, spheroidenone or neurosporene, strongly suggests that the C-terminal region of the alpha polypeptide is involved in binding a carotenoid. The projection map of the LH1alpha C-terminal mutant complex was determined in negative stain at 25 A resolution, and it shows a diameter of 53 A, compared to 50 A for the WT. Hence these new spectral properties have not been accompanied by an alteration in ring size.


Subject(s)
Bacterial Proteins/chemistry , Light-Harvesting Protein Complexes/chemistry , Peptide Fragments/chemistry , Protein Subunits/chemistry , Rhodobacter sphaeroides/chemistry , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Carotenoids/chemistry , Circular Dichroism , Crystallization , Hot Temperature , Light-Harvesting Protein Complexes/genetics , Light-Harvesting Protein Complexes/isolation & purification , Molecular Sequence Data , Peptide Fragments/genetics , Protein Structure, Tertiary/genetics , Protein Subunits/genetics , Protein Subunits/isolation & purification , Recombinant Fusion Proteins/isolation & purification , Rhodobacter sphaeroides/genetics , Rhodospirillum/chemistry , Rhodospirillum/genetics , Sequence Deletion , Spectrometry, Fluorescence , Spectrophotometry , Spectrum Analysis, Raman
11.
Arch Microbiol ; 178(5): 315-24, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12375098

ABSTRACT

Three new spirilloid phototrophic purple nonsulfur bacteria were isolated in pure culture from three different environments: strain CE2105 from a brackish lagoon in the Arcachon Bay (Atlantic coast, France), strain SE3104 from a saline sulfur spring in the Pyrenees (Navarra, Spain), and strain AT2115 a microbial mat (Tetiaroa Atoll, Society Islands). Single cells of the three strains were spiral-shaped and highly motile. Their intracellular photosynthetic membranes were of the vesicular type. Bacteriochlorophyll a and carotenoids of the normal spirilloxanthin series were present as photosynthetic pigments. Optimal growth occurred under photoheterotrophic conditions and in the presence of 0.5-4% w/v NaCl. These features are similar to those described for Roseospira mediosalina. Comparative sequence analysis of their 16S rRNA genes placed these strains within the alpha-subclass of Proteobacteria, in a cluster together with Roseospira mediosalina and Rhodospira trueperi. They form a closely related group of slightly to moderately halophilic spiral-shaped purple nonsulfur bacteria.However, the three new isolates exhibited some differences in their physiology and genetic characteristics. Consequently, we propose that they are members of three new species within the genus Roseospira, Roseospira marina sp. nov., Roseospira navarrensis sp. nov., and Roseospira thiosulfatophila sp. nov., with strains CE2105, SE3104, and AT2115 as the type strains, respectively. As a consequence, an emended description of the genus Roseospira is also given.


Subject(s)
Geologic Sediments/microbiology , Rhodospirillum/classification , Rhodospirillum/genetics , Water Microbiology , Base Composition , Microscopy, Phase-Contrast , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sulfur/metabolism
12.
J Bacteriol ; 184(9): 2429-38, 2002 May.
Article in English | MEDLINE | ID: mdl-11948156

ABSTRACT

Rhodospirillum centenum is a purple photosynthetic bacterium that is capable of differentiating from vibrioid swimming cells that contain a single polar flagellum into rod-shaped swarming cells that have a polar flagellum plus numerous lateral flagella. Microscopic studies have demonstrated that the polar flagellum is constitutively present and that the lateral flagella are found only when the cells are grown on solidified or viscous medium. In this study, we demonstrated that R. centenum contains two sets of motor and switch genes, one set for the lateral flagella and the other for the polar flagellum. Electron microscopic analysis indicated that polar and lateral flagellum-specific FliG, FliM, and FliN switch proteins are necessary for assembly of the respective flagella. In contrast, separate polar and lateral MotA and MotB motor subunits are shown to be required for motility but are not needed for the synthesis of polar and lateral flagella. Phylogenetic analysis indicates that the polar and lateral FliG, FliM, and FliN switch proteins are closely related and most likely arose as a gene duplication event. However, phylogenetic analysis of the MotA and MotB motor subunits suggests that the polar flagellum may have obtained a set of motor genes through a lateral transfer event.


Subject(s)
Flagella/physiology , Movement , Rhodospirillum/physiology , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Flagella/genetics , Flagella/ultrastructure , Genes, Bacterial , Membrane Proteins/genetics , Molecular Sequence Data , Mutation , Open Reading Frames , Phylogeny , Rhodospirillum/genetics , Sequence Alignment
13.
Biotechniques ; 31(3): 598, 600, 602-4, passim, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11570503

ABSTRACT

Cultured cells and environmental samples were used directly in PCRs without the isolation of DNA. Serial dilution was used to eliminate the inhibitory effect of materials in natural samples. Primers specific for pmoA, which encodes a subunit of the particulate methane monooxygenase, were used to detect and quantify methanotrophic bacteria by direct most probable number PCR. Phototrophic bacteria were detected in environmental samples by direct PCR with primers specific for pufM, and members of the bacterial domain were detected with primers for 16S rDNA. Direct PCR provides a rapid, simple, and sensitive methodfor detecting and quantifying bacteria in environmental samples. Detection of methanotrophic bacteria can be applied to monitoring bioremediation.


Subject(s)
Bacteria/isolation & purification , Bacterial Proteins , DNA, Bacterial/isolation & purification , Environmental Microbiology , Polymerase Chain Reaction , Bacteria/genetics , Colony Count, Microbial , Methane/metabolism , Methylococcaceae/genetics , Methylococcaceae/isolation & purification , Oxygenases/genetics , Photosynthetic Reaction Center Complex Proteins/genetics , Polymerase Chain Reaction/methods , RNA, Ribosomal, 16S/genetics , Rhodobacter/genetics , Rhodobacter/isolation & purification , Rhodospirillum/genetics , Rhodospirillum/isolation & purification , Sensitivity and Specificity
14.
J Bacteriol ; 183(1): 171-7, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11114914

ABSTRACT

Photosynthetic bacteria respond to alterations in light conditions by migrating to locations that allows optimal use of light as an energy source. Studies have indicated that photosynthesis-driven electron transport functions as an attractant signal for motility among purple photosynthetic bacteria. However, it is unclear just how the motility-based signal transduction system monitors electron flow through photosynthesis-driven electron transport. Recently, we have demonstrated that the purple photosynthetic bacterium Rhodospirillum centenum is capable of rapidly moving swarm cell colonies toward infrared light as well as away from visible light. Light-driven colony motility of R. centenum has allowed us to perform genetic dissection of the signaling pathway that affects photosynthesis-driven motility. In this study, we have undertaken sequence and mutational analyses of one of the components of a signal transduction pathway, Ptr, which appears responsible for transmitting a signal from the photosynthesis-driven electron transport chain to the chemotaxis signal transduction cascade. Mutational analysis demonstrates that cells disrupted for ptr are defective in altering motility in response to light, as well as defective in light-dependent release of methanol. We present a model which proposes that Ptr senses the redox state of a component in the photosynthetic cyclic electron transport chain and that Ptr is responsible for transmitting a signal to the chemotaxis machinery to induce a photosynthesis-dependent motility response.


Subject(s)
Bacterial Proteins , Membrane Proteins/genetics , Membrane Proteins/metabolism , Photosynthetic Reaction Center Complex Proteins/genetics , Rhodospirillum/physiology , Amino Acid Sequence , Chemotaxis , Gene Deletion , Light , Membrane Proteins/chemistry , Methanol/metabolism , Methyl-Accepting Chemotaxis Proteins , Molecular Sequence Data , Photosynthesis , Photosynthetic Reaction Center Complex Proteins/chemistry , Photosynthetic Reaction Center Complex Proteins/metabolism , Rhodospirillum/genetics , Sequence Analysis, DNA , Signal Transduction
15.
Biochim Biophys Acta ; 1460(2-3): 338-45, 2000 Nov 20.
Article in English | MEDLINE | ID: mdl-11106774

ABSTRACT

The antenna reaction centre system of the recently described purple non-sulfur bacterium Roseospirillum parvum strain 930I was studied with various spectroscopic techniques. The bacterium contains bacteriochlorophyll (BChl) a, 20% of which was esterified with tetrahydrogeranylgeraniol. In the near-infrared, the antenna showed absorption bands at 805 and 909 nm (929 nm at 6 K). Fluorescence bands were located at 925 and 954 nm, at 300 and 6 K, respectively. Fluorescence excitation spectra and time resolved picosecond absorbance difference spectroscopy showed a nearly 100% efficient energy transfer from BChl 805 to BChl 909, with a time constant of only 2.6 ps. This and other evidence indicate that both types of BChl belong to a single LH1 complex. Flash induced difference spectra show that the primary electron donor absorbs at 886 nm, i.e. at 285 cm(-1) higher energy than the long wavelength antenna band. Nevertheless, the time constant for trapping in the reaction centre was the same as for almost all other purple bacteria: 55+/-5 ps. The shape as well as the amplitude of the absorbance difference spectrum of the excited antenna indicated exciton interaction and delocalisation of the excited state over the BChl 909 ring, whereas BChl 805 appeared to have a monomeric nature.


Subject(s)
Bacteria/chemistry , Bacteria/genetics , Bacteriochlorophylls/chemistry , Carotenoids/chemistry , Chromatium/chemistry , Chromatium/genetics , Energy Transfer , Kinetics , Pigments, Biological/chemistry , Rhodospirillum/chemistry , Rhodospirillum/genetics , Spectrometry, Fluorescence , Temperature
16.
Science ; 285(5426): 406-9, 1999 Jul 16.
Article in English | MEDLINE | ID: mdl-10411503

ABSTRACT

A phytochrome-like protein called Ppr was discovered in the purple photosynthetic bacterium Rhodospirillum centenum. Ppr has a photoactive yellow protein (PYP) amino-terminal domain, a central domain with similarity to phytochrome, and a carboxyl-terminal histidine kinase domain. Reconstitution experiments demonstrate that Ppr covalently attaches the blue light-absorbing chromophore p-hydroxycinnamic acid and that it has a photocycle that is spectrally similar to, but kinetically slower than, that of PYP. Ppr also regulates chalcone synthase gene expression in response to blue light with autophosphorylation inhibited in vitro by blue light. Phylogenetic analysis demonstrates that R. centenum Ppr may be ancestral to cyanobacterial and plant phytochromes.


Subject(s)
Bacterial Proteins/chemistry , Photoreceptors, Microbial , Phytochrome/chemistry , Rhodospirillum/chemistry , Acyltransferases/genetics , Amino Acid Sequence , Apoproteins/chemistry , Apoproteins/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Chemotaxis , Cloning, Molecular , Coumaric Acids/metabolism , Gene Expression Regulation, Bacterial , Histidine Kinase , Light , Molecular Sequence Data , Mutation , Phosphorylation , Phylogeny , Propionates , Protein Kinases/metabolism , Rhodospirillum/genetics , Rhodospirillum/physiology , Sequence Alignment
17.
Hereditas ; 128(2): 173-8, 1998.
Article in English | MEDLINE | ID: mdl-9687237

ABSTRACT

The genomic GC contents of both nitrogen-fixing and non-fixing members of eight genera of bacteria are investigated. Analysis by t-tests showed that in the two aerobic general investigated (Aquaspirillum and Vibrio) there is a significantly higher GC content in the nitrogen-fixing members of the genus than in those unable to fix nitrogen, whilst in aerobic genera there is either no GC bias, or in the case of two genera (Rhodospirillum and Clostridium) there is a significantly higher GC content in the non-fixing organisms. This suggests that, in many genera, directional mutational pressures are different in nitrogen-fixing and non-fixing organisms. These results are discussed in the light of known mechanisms of mutation pressure and their relation to environmental variables.


Subject(s)
Bacteria, Aerobic/genetics , DNA, Bacterial/chemistry , Nitrogen Fixation , Bacteria, Aerobic/metabolism , Base Composition , Clostridium/genetics , Clostridium/metabolism , DNA, Bacterial/genetics , Rhodospirillum/genetics , Rhodospirillum/metabolism , Species Specificity , Vibrio/genetics , Vibrio/metabolism
18.
Appl Environ Microbiol ; 64(4): 1283-9, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9546163

ABSTRACT

The small-subunit ribosomal DNA (rDNA) diversity was found to be very high in a Hawaiian soil community that might be expected to have lower diversity than the communities in continental soils because the Hawaiian soil is geographically isolated and only 200 years old, is subjected to a constant climate, and harbors low plant diversity. Since an underlying community structure could not be revealed by analyzing the total eubacterial rDNA, we first fractionated the DNA on the basis of guanine-plus-cytosine (G + C) content by using bisbenzimidazole and equilibrium centrifugation and then analyzed the bacterial rDNA amplified from a fraction with a high biomass (63% G + C fraction) and a fraction with a low biomass (35% G + C fraction). The rDNA clone libraries were screened by amplified rDNA restriction analysis to determine phylotype distribution. The dominant biomass reflected by the 63% G + C fraction contained several dominant phylotypes, while the community members that were less successful (35% G + C fraction) did not show dominance but there was a very high diversity of phylotypes. Nucleotide sequence analysis revealed taxa belonging to the groups expected for the G + C contents used. The dominant phylotypes in the 63% G + C fraction were members of the Pseudomonas, Rhizobium-Agrobacterium, and Rhodospirillum assemblages, while all of the clones sequenced from the 35% G + C fraction were affiliated with several Clostridium assemblages. The two-step rDNA analysis used here uncovered more diversity than can be detected by direct rDNA analysis of total community DNA. The G + C separation step is also a way to detect some of the less dominant organisms in a community.


Subject(s)
DNA, Bacterial/isolation & purification , DNA, Ribosomal/isolation & purification , Soil Microbiology , Base Composition , Clostridium/chemistry , Clostridium/genetics , Clostridium/isolation & purification , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Ecosystem , Genetic Variation , Hawaii , Phylogeny , Pseudomonas/chemistry , Pseudomonas/genetics , Pseudomonas/isolation & purification , Rhizobium/chemistry , Rhizobium/genetics , Rhizobium/isolation & purification , Rhodospirillum/chemistry , Rhodospirillum/genetics , Rhodospirillum/isolation & purification
19.
J Bacteriol ; 180(5): 1248-55, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9495765

ABSTRACT

The purple photosynthetic bacterium Rhodospirillum centenum is capable of forming swarm colonies that rapidly migrate toward or away from light, depending on the wavelength of excitation. To identify components specific for photoperception, we conducted mini-Tn5-mediated mutagenesis and screened approximately 23,000 transposition events for mutants that failed to respond to either continuous illumination or to a step down in light intensity. A majority of the ca. 250 mutants identified lost the ability to form motile swarm cells on an agar surface. These cells appeared to contain defects in the synthesis or assembly of surface-induced lateral flagella. Another large fraction of mutants that were unresponsive to light were shown to be defective in the formation of a functional photosynthetic apparatus. Several photosensory mutants also were obtained with defects in the perception and transmission of light signals. Twelve mutants in this class were shown to contain disruptions in a chemotaxis operon, and five mutants contained disruptions of components unique to photoperception. It was shown that screening for photosensory defective R. centenum swarm colonies is an effective method for genetic dissection of the mechanism of light sensing in eubacteria.


Subject(s)
DNA Transposable Elements , Light , Rhodospirillum/genetics , Rhodospirillum/physiology , Chemotaxis/genetics , Conjugation, Genetic , Flagella/genetics , Flagella/metabolism , Flagella/physiology , Genes, Bacterial , Movement , Mutagenesis, Insertional , Mutation , Operon , Photosynthesis , Rhodospirillum/cytology , Rhodospirillum/metabolism , Signal Transduction/genetics
20.
J Bacteriol ; 179(18): 5712-9, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9294426

ABSTRACT

A chemotaxis gene cluster from the photosynthetic bacterium Rhodospirillum centenum has been cloned, sequenced, and analyzed for the control of transcription during swimmer-to-swarm cell differentiation. The first gene of the operon (cheAY) codes for a large 108-kDa polypeptide with an amino-terminal domain that is homologous to CheA and a carboxyl terminus that is homologous to CheY. cheAY is followed by cheW, an additional homolog of cheY, cheB, and cheR. Sequence analysis indicated that all of the che genes are tightly compacted with the same transcriptional polarity, suggesting that they are organized in an operon. Cotranscription of the che genes was confirmed by demonstrating through Western blot analysis that insertion of a polar spectinomycin resistance gene in cheAY results in loss of cheR expression. The promoter for the che operon was mapped by primer extension analysis as well as by the construction of promoter reporter plasmids that include several deletion intervals. This analysis indicated that the R. centenum che operon utilizes two promoters; one exhibits a sigma 70-like sequence motif, and the other exhibits a sigma 54-like motif. Expression of the che operon is shown to be relatively constant for swimmer cells which contain a single flagellum and for swarm cells that contain multiple lateral flagella.


Subject(s)
Bacterial Proteins , Chemotaxis , Membrane Proteins/genetics , Operon , Rhodospirillum/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Bacterial/genetics , Gene Expression Regulation, Bacterial , Genes, Bacterial , Methyl-Accepting Chemotaxis Proteins , Molecular Sequence Data , Promoter Regions, Genetic , Restriction Mapping , Sequence Alignment , Sequence Homology, Amino Acid , Signal Transduction , Transcription, Genetic
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