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1.
J Environ Manage ; 362: 121351, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38838535

ABSTRACT

In this study, the growth of yeast and yeast-like fungi in the liquid digestate from vegetable wastes was investigated in order to remove nutrients and organic pollutants, and for their application as co-culture members with green microalgae. The studied yeast strains were characterized for their assimilative and enzymatic profiles as well as temperature requirements. In the first experimental stage, the growth dynamics of each strain were determined, allowing to select the best yeasts for further studies. In the subsequent stage, the ability of selectants to remove organic pollutants was assessed. Different cultivation media containing respectively 1:3, 1:1, 3:1 vol ratio of liquid digestate and the basal minimal medium were used. Among all tested yeast strains, Rhodotorula mucilaginosa DSM 70825 showed the most promising results, demonstrating the highest potential for removing organic substrates and nutrients. Depending on the medium, this strain achieved 50-80% sCOD, 45-60% tVFAs, 21-45% TN, 33-52% PO43- reduction rates. Similar results were obtained for the strain Candida sp. OR687571. The high nutrient and organics removal efficiency by these yeasts could likely be linked to their ability to assimilate xylose (being the main source of carbon in the liquid digestate). In culture media containing liquid digestate, both yeast strains achieved good viability and proliferation potential. In the liquid digestate medium, R. mucilaginosa and Candida sp. showed vitality at the level of 51.5% and 45.0%, respectively. These strains seem to be a good starting material for developing effective digestate treatment strategies involving monocultures and/or consortia with other yeasts or green microalgae.


Subject(s)
Coculture Techniques , Microalgae , Yeasts , Microalgae/growth & development , Microalgae/metabolism , Yeasts/metabolism , Yeasts/growth & development , Rhodotorula/metabolism , Rhodotorula/growth & development , Nutrients/metabolism , Biodegradation, Environmental , Candida/growth & development , Candida/metabolism
2.
Arch Microbiol ; 206(6): 245, 2024 May 03.
Article in English | MEDLINE | ID: mdl-38702537

ABSTRACT

Production of carotenoids by yeast fermentation is an advantaged technology due to its easy scaling and safety. Nevertheless, carotenoid production needs an economic culture medium and other efficient yeast stains. The study aims to isolate and identify a yeast strain capable of producing carotenoids using a cost-effective substrate. A new strain was identified as Rhodotorula toruloides L/24-26-1, which can produce carotenoids at different pretreated and unpretreated sugarcane molasses concentrations (40 and 80 g/L). The highest biomass concentration (18.6 ± 0.6 g/L) was reached in the culture using 80 g/L of hydrolyzed molasses. On the other hand, the carotenoid accumulation reached the maximum value using pretreated molasses at 40 g/L (715.4 ± 15.1 µg/g d.w). In this case, the ß-carotene was 1.5 times higher than that on the control medium. The yeast growth in molasses was not correlated with carotenoid production. The most outstanding production of The DPPH, ABTS, and FRAP tests demonstrated the antioxidant activity of the obtained carotenogenic extracts. This research demonstrated the R. toruloides L/24-26-1 strain biotechnological potential for carotenoid compounds. The yeast produces carotenoids with antioxidant activity in an inexpensive medium, such as sulfuric acid pretreated and unpretreated molasses.


Subject(s)
Fermentation , Molasses , Rhodotorula , Saccharum , beta Carotene , Rhodotorula/metabolism , Rhodotorula/genetics , Rhodotorula/growth & development , Rhodotorula/isolation & purification , Rhodotorula/classification , Saccharum/metabolism , beta Carotene/metabolism , beta Carotene/biosynthesis , Carotenoids/metabolism , Antioxidants/metabolism , Biomass , Culture Media/chemistry , Phylogeny
3.
Microb Cell Fact ; 23(1): 141, 2024 May 17.
Article in English | MEDLINE | ID: mdl-38760782

ABSTRACT

BACKGROUND: The oleaginous yeast Rhodotorula toruloides is a promising chassis organism for the biomanufacturing of value-added bioproducts. It can accumulate lipids at a high fraction of biomass. However, metabolic engineering efforts in this organism have progressed at a slower pace than those in more extensively studied yeasts. Few studies have investigated the lipid accumulation phenotype exhibited by R. toruloides under nitrogen limitation conditions. Consequently, there have been only a few studies exploiting the lipid metabolism for higher product titers. RESULTS: We performed a multi-omic investigation of the lipid accumulation phenotype under nitrogen limitation. Specifically, we performed comparative transcriptomic and lipidomic analysis of the oleaginous yeast under nitrogen-sufficient and nitrogen deficient conditions. Clustering analysis of transcriptomic data was used to identify the growth phase where nitrogen-deficient cultures diverged from the baseline conditions. Independently, lipidomic data was used to identify that lipid fractions shifted from mostly phospholipids to mostly storage lipids under the nitrogen-deficient phenotype. Through an integrative lens of transcriptomic and lipidomic analysis, we discovered that R. toruloides undergoes lipid remodeling during nitrogen limitation, wherein the pool of phospholipids gets remodeled to mostly storage lipids. We identify specific mRNAs and pathways that are strongly correlated with an increase in lipid levels, thus identifying putative targets for engineering greater lipid accumulation in R. toruloides. One surprising pathway identified was related to inositol phosphate metabolism, suggesting further inquiry into its role in lipid accumulation. CONCLUSIONS: Integrative analysis identified the specific biosynthetic pathways that are differentially regulated during lipid remodeling. This insight into the mechanisms of lipid accumulation can lead to the success of future metabolic engineering strategies for overproduction of oleochemicals.


Subject(s)
Lipid Metabolism , Nitrogen , Rhodotorula , Rhodotorula/metabolism , Rhodotorula/genetics , Nitrogen/metabolism , Transcriptome , Metabolic Engineering/methods , Phospholipids/metabolism , Lipidomics , Lipids/biosynthesis
4.
World J Microbiol Biotechnol ; 40(7): 211, 2024 May 23.
Article in English | MEDLINE | ID: mdl-38777956

ABSTRACT

Human nutrition and health rely on edible oils. Global demand for edible oils is expanding, necessitating the discovery of new natural oil sources subjected to adequate quality and safety evaluation. However, in contrast to other agricultural products, India's edible oil supply is surprisingly dependent on imports. The microbial oil is generated by fermentation of oleaginous yeast Rhodotorula mucilaginosa IIPL32 MTCC 25056 using biodiesel plant byproduct crude glycerol as a fermentable carbon source. Enriched with monounsaturated fatty acid, nutritional indices mapping based on the fatty acid composition of the yeast SCO, suggested its plausible use as an edible oil blend. In the present study, acute toxicity evaluation of the yeast SCO in C57BL/6 mice has been performed by randomly dividing the animals into 5 groups with 50, 300, 2000, and 5000 mg/Kg yeast SCO dosage, respectively, and predicted the median lethal dose (LD50). Detailed blood biochemistry and kidney and liver histopathology analyses were also reported. The functions of the liver enzymes were also evaluated to check and confirm the anticipated toxicity. To determine cell viability and in vitro biocompatibility, the 3T3-L1 cell line and haemolysis tests were performed. The results suggested the plausible use of yeast SCO as an edible oil blend due to its non-toxic nature in mice models.


Subject(s)
Liver , Mice, Inbred C57BL , Rhodotorula , Animals , Mice , Liver/metabolism , Liver/drug effects , Rhodotorula/metabolism , Fermentation , Lethal Dose 50 , Cell Survival/drug effects , Plant Oils/toxicity , Plant Oils/metabolism , Fatty Acids/metabolism , Glycerol/metabolism , Biofuels , Kidney/drug effects , Toxicity Tests, Acute , Male , Administration, Oral , India
5.
Int J Biol Macromol ; 269(Pt 2): 132103, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38719011

ABSTRACT

Rhodotorula spp. has been studied as one powerful source for a novel cell factory with fast growth and its high added-value biomolecules. However, its inadequate genome and genomic annotation have hindered its widespread use in cosmetics and food industries. Rhodotorula glutinis QYH-2023, was isolated from rice rhizosphere soil, and the highest quality of the genome of the strain was obtained at chromosome level (18 chromosomes) than ever before in red yeast in this study. Comparative genomics analysis revealed that there are more key gene copies of carotenoids biosynthesis in R. glutinis QYH-2023 than other species of Rhodotorula spp. Integrated transcriptome and metabolome analysis revealed that lipids and carotenoids biosynthesis was significantly enriched during fermentation. Subsequent investigation revealed that the over-expression of the strain three genes related to carotenoids biosynthesis in Komagataella phaffii significantly promoted the carotenoid production. Furthermore, in vitro tests initially confirmed that the longer the fermentation period, the synthesized metabolites controlled by R. glutinis QYH-2023 genome had the stronger anti-inflammatory properties. All of the findings revealed a high-quality reference genome which highlight the potential of R. glutinis strains to be employed as chassis cells for biosynthesizing carotenoids and other active chemicals.


Subject(s)
Carotenoids , Genome, Fungal , Rhodotorula , Carotenoids/metabolism , Rhodotorula/genetics , Rhodotorula/metabolism , Anti-Inflammatory Agents/pharmacology , Fermentation , Chromosomes, Fungal/genetics , Genomics/methods , Transcriptome
6.
J Agric Food Chem ; 72(18): 10428-10438, 2024 May 08.
Article in English | MEDLINE | ID: mdl-38660720

ABSTRACT

Tebuconazole is a chiral triazole fungicide used globally in agriculture as a racemic mixture, but its enantiomers exhibit significant enantioselective dissimilarities in bioactivity and environmental behaviors. The steric hindrance caused by the tert-butyl group makes it a great challenge to synthesize tebuconazole enantiomers. Here, we designed a simple chemoenzymatic approach for the asymmetric synthesis of (R)-tebuconazole, which includes the biocatalytic resolution of racemic epoxy-precursor (2-tert-butyl-2-[2-(4-chlorophenyl)ethyl] oxirane, rac-1a) by Escherichia coli/Rpeh whole cells expressed epoxide hydrolase from Rhodotorula paludigensis (RpEH), followed by a one-step chemocatalytic synthesis of (R)-tebuconazole. It was observed that (S)-1a was preferentially hydrolyzed by E. coli/Rpeh, whereas (R)-1a was retained with a specific activity of 103.8 U/g wet cells and a moderate enantiomeric ratio (E value) of 13.4, which was remarkably improved to 43.8 after optimizing the reaction conditions. Additionally, a gram-scale resolution of 200 mM rac-1a was performed using 150 mg/mL E. coli/Rpeh wet cells, resulting in the retention of (R)-1a in a 97.0% ees, a 42.5% yields, and a 40.5 g/L/d space-time yield. Subsequently, the synthesis of highly optical purity (R)-tebuconazole (>99% ee) was easily achieved through the chemocatalytic ring-opening of the epoxy-precursor (R)-1a with 1,2,4-triazole. To elucidate insight into the enantioselectivity, molecular docking simulations revealed that the unique L-shaped substrate-binding pocket of RpEH plays a crucial role in the enantioselective recognition of bulky 2,2-disubstituted oxirane 1a.


Subject(s)
Biocatalysis , Epoxide Hydrolases , Fungal Proteins , Fungicides, Industrial , Rhodotorula , Triazoles , Rhodotorula/enzymology , Rhodotorula/chemistry , Rhodotorula/metabolism , Triazoles/chemistry , Triazoles/metabolism , Fungicides, Industrial/chemistry , Fungicides, Industrial/metabolism , Fungicides, Industrial/chemical synthesis , Epoxide Hydrolases/metabolism , Epoxide Hydrolases/chemistry , Stereoisomerism , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Molecular Docking Simulation , Escherichia coli/enzymology , Escherichia coli/metabolism
7.
Sci Rep ; 14(1): 9188, 2024 04 22.
Article in English | MEDLINE | ID: mdl-38649733

ABSTRACT

This study assessed Rhodotorula paludigena CM33's growth and ß-carotene production in a 22-L bioreactor for potential use as an aquatic animal feed supplement. Optimizing the feed medium's micronutrient concentration for high-cell-density fed-batch cultivation using glucose as the carbon source yielded biomass of 89.84 g/L and ß-carotene concentration of 251.64 mg/L. Notably, using sucrose as the carbon source in feed medium outperforms glucose feeds, resulting in a ß-carotene concentration of 285.00 mg/L with a similar biomass of 87.78 g/L. In the fed-batch fermentation using Sucrose Feed Medium, R. paludigena CM33 exhibited high biomass production rates (Qx) of 0.91 g/L.h and remarkable ß-carotene production rates (Qp) of 2.97 mg/L.h. In vitro digestibility assays showed that R. paludigena CM33, especially when cultivated using sucrose, enhances protein digestibility affirming its suitability as an aquatic feed supplement. Furthermore, R. paludigena CM33's nutrient-rich profile and probiotic potential make it an attractive option for aquatic nutrition. This research highlights the importance of cost-effective carbon sources in large-scale ß-carotene production for aquatic animal nutrition.


Subject(s)
Biomass , Rhodotorula , beta Carotene , Rhodotorula/metabolism , beta Carotene/metabolism , beta Carotene/biosynthesis , Animals , Animal Feed , Fermentation , Bioreactors , Sucrose/metabolism , Glucose/metabolism , Culture Media/chemistry , Batch Cell Culture Techniques/methods , Aquatic Organisms/metabolism
8.
Food Funct ; 15(8): 4323-4337, 2024 Apr 22.
Article in English | MEDLINE | ID: mdl-38530276

ABSTRACT

Microbial transformation is extensively utilized to generate new metabolites in bulk amounts with more specificity and improved activity. As cinnamic acid was reported to exhibit several important pharmacological properties, microbial transformation was used to obtain its new derivatives with enhanced biological activities. By manipulating the 2-stage fermentation protocol of biotransformation, five metabolites were produced from cinnamic acid. Two of them were new derivatives; N-propyl cinnamamide 2̲ and 2-methyl heptyl benzoate 3̲ produced by Alternaria alternata. The other 3 metabolites, p-hydroxy benzoic acid 4̲, cinnamyl alcohol 5̲ and methyl cinnamate 6̲, were produced by Rhodotorula rubra, Rhizopus species and Penicillium chrysogeneum, respectively. Cinnamic acid and its metabolites were evaluated for their cyclooxygenase (COX) and acetylcholinesterase (AChE) inhibitory activities. Protection against H2O2 and Aß1-42 induced-neurotoxicity in human neuroblastoma (SH-SY5Y) cells was also monitored. Metabolite 4̲ was more potent as a COX-2 inhibitor than the parent compound with an IC50 value of 1.85 ± 0.07 µM. Out of the tested compounds, only metabolite 2̲ showed AChE inhibitory activity with an IC50 value of 8.27 µM. These results were further correlated with an in silico study of the binding interactions of the active metabolites with the active sites of the studied enzymes. Metabolite 3̲ was more potent as a neuroprotective agent against H2O2 and Aß1-42 induced-neurotoxicity than catechin and epigallocatechin-3-gallate as positive controls. This study suggested the two new metabolites 2̲ and 3̲ along with metabolite 4̲ as potential leads for neurodegenerative diseases associated with cholinergic deficiency, neurotoxicity or neuroinflammation.


Subject(s)
Biotransformation , Cholinesterase Inhibitors , Cinnamates , Neuroprotective Agents , Propanols , Humans , Cinnamates/pharmacology , Cinnamates/metabolism , Cinnamates/chemistry , Neuroprotective Agents/pharmacology , Cholinesterase Inhibitors/pharmacology , Cell Line, Tumor , Acetylcholinesterase/metabolism , Molecular Docking Simulation , Rhodotorula/metabolism , Alternaria/metabolism , Cyclooxygenase 2 Inhibitors/pharmacology , Cyclooxygenase 2 Inhibitors/metabolism
9.
Biochim Biophys Acta Bioenerg ; 1865(2): 149035, 2024 Apr 01.
Article in English | MEDLINE | ID: mdl-38360260

ABSTRACT

Rhodotorula mucilaginosa survives extreme conditions through several mechanisms, among them its carotenoid production and its branched mitochondrial respiratory chain (RC). Here, the branched RC composition was analyzed by biochemical and complexome profiling approaches. Expression of the different RC components varied depending on the growth phase and the carbon source present in the medium. R. mucilaginosa RC is constituted by all four orthodox respiratory complexes (CI to CIV) plus several alternative oxidoreductases, in particular two type-II NADH dehydrogenases (NDH2) and one alternative oxidase (AOX). Unlike others, in this yeast the activities of the orthodox and alternative respiratory complexes decreased in the stationary phase. We propose that the branched RC adaptability is an important factor for survival in extreme environmental conditions; thus, contributing to the exceptional resilience of R. mucilaginosa.


Subject(s)
Extremophiles , Rhodotorula , Electron Transport , Rhodotorula/chemistry , Rhodotorula/metabolism , Mitochondrial Membranes/metabolism
10.
J Sci Food Agric ; 104(7): 4050-4057, 2024 May.
Article in English | MEDLINE | ID: mdl-38353320

ABSTRACT

BACKGROUND: Ergothioneine (EGT) is a high-value food functional factor that cannot be synthesized by humans and other vertebrates, and the low yield limits its application. RESULTS: In this study, the optimal fermentation temperature, fermentation time, initial pH, inoculum age, and inoculation ratio on EGT biosynthesis of Rhodotorula mucilaginosa DL-X01 were optimized. In addition, the effects of three key precursor substances - histidine, methionine, and cysteine - on fungal EGT synthesis were verified. The optimal conditions were further obtained by response surface optimization. The EGT yield of R. mucilaginosa DL-X01 under optimal fermentation conditions reached 64.48 ± 2.30 mg L-1 at shake flask fermentation level. Finally, the yield was increased to 339.08 ± 3.31 mg L-1 (intracellular) by fed-batch fermentation in a 5 L bioreactor. CONCLUSION: To the best of our knowledge, this is the highest EGT yield ever reported in non-recombinant strains. The fermentation strategy described in this study will promote the efficient biosynthesis of EGT in red yeast and its sustainable production in the food industry. © 2024 Society of Chemical Industry.


Subject(s)
Ergothioneine , Monascus , Rhodotorula , Humans , Animals , Rhodotorula/genetics , Rhodotorula/metabolism , Antioxidants/metabolism , Histidine , Fermentation , Monascus/metabolism
11.
Biotechnol J ; 19(1): e2300483, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38041508

ABSTRACT

Rhodotorula toruloides can utilize crude glycerol as the low-cost carbon source for lipid production, but its growth is subjected to inhibition by methanol in crude glycerol. Here, transcriptome profiling demonstrated that 1004 genes were significantly regulated in the strain R. toruloides TO2 under methanol stress. Methanol impaired the function of membrane transport and subsequently weakened the utilization of glycerol, activities of the primary metabolism and functions of nucleus and ribosome. Afterwards the tolerance of TO2 to methanol was improved by using two-round adaptive laboratory evolution (ALE). The final strain M2-ale had tolerance up to 3.5% of methanol. 1 H NMR-based metabolome analysis indicated that ALE not only improved the tolerance of M2-ale to methanol but also tuned the carbon flux towards the biosynthesis of glycerolipid-related metabolites. The biomass and lipid titer of M2-ale reached 14.63 ± 0.45 g L-1 and 7.06 ± 0.44 g L-1 at 96 h in the crude glycerol medium, which increased up to 17.69% and 31.39%, respectively, comparing with TO2. Afterwards, an effective method for cell lysis was developed by combining sonication and enzymatic hydrolysis (So-EnH). The lytic effect of So-EnH was validated by using confocal imaging and flow cytometry. At last, lipid recovery rate reached 95.4 ± 2.7% at the optimized condition.


Subject(s)
Glycerol , Rhodotorula , Glycerol/metabolism , Methanol/metabolism , Rhodotorula/genetics , Rhodotorula/metabolism , Biomass , Lipids
12.
FEMS Yeast Res ; 232023 01 04.
Article in English | MEDLINE | ID: mdl-37796891

ABSTRACT

This study investigated the potential of wastepaper hydrolysate as a sustainable and low-cost carbon source for single-cell oil and protein production, attending to the growing need for alternative feedstocks and waste management strategies. Wastepaper, characterized by its high carbohydrate content, was subjected to enzymatic and chemo-enzymatic treatments for carbohydrate release. The chemo-enzymatic treatment performed better, yielding 65.3 g l-1 of fermentable sugars. A total of 62 yeast strains were screened for single-cell oil accumulation, identifying Rhodotorula mucilaginosa M1K4 as the most advantageous oleaginous yeast. M1K4 lipid production was optimized in liquid culture, and its fatty acid profile was analyzed, showing a high content of industrially valuable fatty acids, particularly palmitic (28%) and oleic (51%). Batch-culture of M1K4 in a 3-l reactor demonstrated the strain's ability to utilize wastepaper hydrolysate as a carbon source, with dry cell weight, total lipid and protein production of 17.7 g l-1, 4.5 g l-1, and 2.1 g l-1, respectively. Wastepaper as a substrate provides a sustainable solution for waste management and bioproduction. This research highlights the potential of R. mucilaginosa for lipid and protein production from wastepaper hydrolysate.


Subject(s)
Rhodotorula , Yeasts , Rhodotorula/metabolism , Fatty Acids/metabolism , Carbohydrates , Carbon/metabolism
13.
Sheng Wu Gong Cheng Xue Bao ; 39(6): 2313-2333, 2023 Jun 25.
Article in Chinese | MEDLINE | ID: mdl-37401596

ABSTRACT

Rhodotorula toruloides is a non-conventional red yeast that can synthesize various carotenoids and lipids. It can utilize a variety of cost-effective raw materials, tolerate and assimilate toxic inhibitors in lignocellulosic hydrolysate. At present, it is widely investigated for the production of microbial lipids, terpenes, high-value enzymes, sugar alcohols and polyketides. Given its broad industrial application prospects, researchers have carried out multi-dimensional theoretical and technological exploration, including research on genomics, transcriptomics, proteomics and genetic operation platform. Here we review the recent progress in metabolic engineering and natural product synthesis of R. toruloides, and prospect the challenges and possible solutions in the construction of R. toruloides cell factory.


Subject(s)
Gene Editing , Rhodotorula , Metabolic Engineering , Rhodotorula/genetics , Rhodotorula/metabolism , Lipids
14.
Bioresour Technol ; 384: 129379, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37352986

ABSTRACT

The study reports the exploration of the transcriptome landscape of the red oleaginous yeast Rhodotorula mucilaginosa IIPL32 coinciding with the fermentation kinetics of the yeast cultivated in a two-stage fermentation process to exploit the time-series approach to get the complete transcripts picture and reveal the persuasive genes for fatty acid and terpenoid synthesis. The finding displayed the molecular drivers with more than 2-fold upregulation in the nitrogen-limited stage than in the nitrogen-excess stage. The rate-limiting diphosphomevalonate decarboxylase, acetylCoA-citrate lyase, and acetyl-CoA C-acetyltransferase were significant in controlling the metabolic flux in the synthesis of reduced compounds, and acetoacetyl-CoA synthase, 3-ketoacyl-acyl carrier-protein reductase, and ß-subunit enoyl reductase catalyze the key starting steps of lipids or terpenoid synthesis. The last two catalyze essential reduction steps in fatty acid synthesis. These enzymes would be the prime targets for the metabolic engineering of the oleaginous yeast for enhanced fatty acids and terpenoid production.


Subject(s)
Rhodotorula , Rhodotorula/genetics , Rhodotorula/metabolism , Glycerol/metabolism , Transcriptome/genetics , Carotenoids/metabolism , Yeasts/genetics , Yeasts/metabolism , Fatty Acids/metabolism , Oxidoreductases/metabolism , Nitrogen/metabolism
15.
World J Microbiol Biotechnol ; 39(9): 234, 2023 Jun 26.
Article in English | MEDLINE | ID: mdl-37358633

ABSTRACT

Microbial lipids are considered promising and environmentally friendly substitutes for fossil fuels and plant-derived oils. They alleviate the depletion of limited petroleum storage and the decrement of arable lands resulting from the greenhouse effect. Microbial lipids derived from oleaginous yeasts provide fatty acid profiles similar to plant-derived oils, which are considered as sustainable and alternative feedstocks for use in the biofuel, cosmetics, and food industries. Rhodotorula toruloides is an intriguing oleaginous yeast strain that can accumulate more than 70% of its dry biomass as lipid content. It can utilize a wide range of substrates, including low-cost sugars and industrial waste. It is also robust against various industrial inhibitors. However, precise control of the fatty acid profile of the lipids produced by R. toruloides is essential for broadening its biotechnological applications. This mini-review describes recent progress in identifying fatty synthesis pathways and consolidated strategies used for specific fatty acid-rich lipid production via metabolic engineering, strain domestication. In addition, this mini-review summarized the effects of culture conditions on fatty acid profiles in R. toruloides. The perspectives and constraints of harnessing R. toruloides for tailored lipid production are also discussed in this mini-review.


Subject(s)
Fatty Acids , Rhodotorula , Fatty Acids/metabolism , Rhodotorula/metabolism , Yeasts/metabolism , Oils/metabolism
16.
Sci Rep ; 13(1): 5016, 2023 03 28.
Article in English | MEDLINE | ID: mdl-36977741

ABSTRACT

Polyester-urethanes as the most widely used polyurethanes (PUs) are among the most recalcitrant plastics in natural conditions. Among existing approaches for managing and reducing plastic waste, biodegradation as a promising approach to reduce plastic waste pollution has drawn scientific society's attention in recent years. In this study, two polyester-polyether urethane degrading yeasts were isolated and identified as two new strains of Exophilia sp. NS-7 and Rhodotorula sp. NS-12. The results showed that Exophilia sp. NS-7 is esterase, protease, and urease positive, and Rhodotorula sp. NS-12 can produce esterase and urease. Both strains can degrade Impranil® as the sole carbon source with the highest growth rate in 4-6 and 8-12 days, respectively. SEM micrograph revealed PU degradation ability in both strains by showing so many pits and holes in treated films. The Sturm test showed that these two isolates can mineralize PU to CO2, and significant decreases in N-H stretching, C-H stretching, C=O stretching, and N-H/C=O bending absorption in the molecular structure of PU were revealed by the FT-IR spectrum. The detection of the deshielding effect in chemical shifts of the H-NMR spectrum after the treatment also confirmed the destructive effects of both strains on PU films.


Subject(s)
Polyurethanes , Rhodotorula , Polyurethanes/metabolism , Rhodotorula/metabolism , Polyesters/metabolism , Spectroscopy, Fourier Transform Infrared , Urease , Biodegradation, Environmental , Esterases
17.
Appl Microbiol Biotechnol ; 107(4): 1491-1501, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36633623

ABSTRACT

Enhancing the lipid production of oleaginous yeasts is conducive to cutting the cost of feedstock for biodiesel. To increase the lipid productivity of Rhodotorula sp. U13N3, genes involving lipid degradation were knocked out and fermentation conditions were investigated. Results of transcription analysis demonstrated that genes encoding the ATG15-like lipase (ATG15) and peroxisomal acyl-CoA oxidase (ACOX2) were upregulated significantly at the lipogenesis stage. When ATG15 and ACOX2 were knocked out separately from the genome by the CRISPR/Cas9 method, both ΔATG15 and ΔACOX2 mutants showed better lipid production ability than the parent strain. Flow cytometry and confocal microscopic analyses indicated that simultaneous the knockout of ATG15 and ACOX2 did not impact the cell viability, whereas the lipid production was enhanced markedly as the lipid yield increased by 67.03% in shake flasks. Afterward, the ΔATG15ΔACOX2 transformant (TO2) was cultivated in shake flasks in the fed-batch mode; the highest biomass and lipid yield reached 45.76 g/L and 27.14 g/L at 216 h, respectively. Better performance was achieved when TO2 was cultivated in the 1-L bioreactor. At the end of fermentation (180 h), lipid content, yield, yield coefficient, and productivity reached 65.53%, 27.35 g/L, 0.277 g/g glycerol, and 0.152 g/L/h, respectively. These values were at the high level in comparison with Rhodotorula strains cultivated in glycerol media. Besides, fermentation modes did not affect the fatty acid composition of TO2 significantly. In conclusion, blocking the lipid degradation was an applicable strategy to increase the lipid production of Rhodotorula strains without compromising their cell viability. KEY POINTS: • ATG15-like lipase and acyl-CoA oxidase (ACOX2) participated in lipid degradation. • Knockout of ATG15 and ACOX2 increased lipid productivity, and lipid yield coefficient. • Cell viability maintained at high level in the knockout mutants during fermentation.


Subject(s)
Rhodotorula , Rhodotorula/genetics , Rhodotorula/metabolism , Glycerol/metabolism , Fatty Acids/metabolism , Yeasts/metabolism , Biofuels , Lipase/metabolism , Biomass , Triglycerides/metabolism
18.
J Agric Food Chem ; 71(4): 1802-1819, 2023 Feb 01.
Article in English | MEDLINE | ID: mdl-36688927

ABSTRACT

Rhodotorula toruloides is receiving significant attention as a novel cell factory because of its high production of lipids and carotenoids, fast growth and high cell density, as well as the ability to utilize a wide variety of substrates. These attractive traits of R. toruloides make it possible to become a low-cost producer that can be engineered for the production of various fuels and chemicals. However, the lack of understanding and genetic engineering tools impedes its metabolic engineering applications. A number of research efforts have been devoted to filling these gaps. This review focuses on recent developments in genetic engineering tools, advances in systems biology for improved understandings, and emerging engineered strains for metabolic engineering applications. Finally, future trends and barriers in developing R. toruloides as a cell factory are also discussed.


Subject(s)
Rhodotorula , Rhodotorula/genetics , Rhodotorula/metabolism , Metabolic Engineering , Phenotype , Carotenoids/metabolism
19.
Chinese Journal of Biotechnology ; (12): 2313-2333, 2023.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-981204

ABSTRACT

Rhodotorula toruloides is a non-conventional red yeast that can synthesize various carotenoids and lipids. It can utilize a variety of cost-effective raw materials, tolerate and assimilate toxic inhibitors in lignocellulosic hydrolysate. At present, it is widely investigated for the production of microbial lipids, terpenes, high-value enzymes, sugar alcohols and polyketides. Given its broad industrial application prospects, researchers have carried out multi-dimensional theoretical and technological exploration, including research on genomics, transcriptomics, proteomics and genetic operation platform. Here we review the recent progress in metabolic engineering and natural product synthesis of R. toruloides, and prospect the challenges and possible solutions in the construction of R. toruloides cell factory.


Subject(s)
Gene Editing , Metabolic Engineering , Rhodotorula/metabolism , Lipids
20.
Int J Mol Sci ; 23(23)2022 Nov 29.
Article in English | MEDLINE | ID: mdl-36499311

ABSTRACT

Rhodotorula dairenensis ß-fructofuranosidase is a highly glycosylated enzyme with broad substrate specificity that catalyzes the synthesis of 6-kestose and a mixture of the three series of fructooligosaccharides (FOS), fructosylating a variety of carbohydrates and other molecules as alditols. We report here its three-dimensional structure, showing the expected bimodular arrangement and also a unique long elongation at its N-terminus containing extensive O-glycosylation sites that form a peculiar arrangement with a protruding loop within the dimer. This region is not required for activity but could provide a molecular tool to target the dimeric protein to its receptor cellular compartment in the yeast. A truncated inactivated form was used to obtain complexes with fructose, sucrose and raffinose, and a Bis-Tris molecule was trapped, mimicking a putative acceptor substrate. The crystal structure of the complexes reveals the major traits of the active site, with Asn387 controlling the substrate binding mode. Relevant residues were selected for mutagenesis, the variants being biochemically characterized through their hydrolytic and transfructosylating activity. All changes decrease the hydrolytic efficiency against sucrose, proving their key role in the activity. Moreover, some of the generated variants exhibit redesigned transfructosylating specificity, which may be used for biotechnological purposes to produce novel fructosyl-derivatives.


Subject(s)
Rhodotorula , beta-Fructofuranosidase , beta-Fructofuranosidase/metabolism , Rhodotorula/genetics , Rhodotorula/metabolism , Oligosaccharides/chemistry , Substrate Specificity , Sucrose/metabolism
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