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1.
Ecohealth ; 21(1): 1-8, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38748281

ABSTRACT

From July 2020 to June 2021, 248 wild house mice (Mus musculus), deer mice (Peromyscus maniculatus), brown rats (Rattus norvegicus), and black rats (Rattus rattus) from Texas and Washington, USA, and British Columbia, Canada, were tested for SARS-CoV-2 exposure and infection. Two brown rats and 11 house mice were positive for neutralizing antibodies using a surrogate virus neutralization test, but negative or indeterminate with the Multiplexed Fluorometric ImmunoAssay COVID-Plex, which targets full-length spike and nuclear proteins. Oro-nasopharyngeal swabs and fecal samples tested negative by RT-qPCR, with an indeterminate fecal sample in one house mouse. Continued surveillance of SARS-CoV-2 in wild rodents is warranted.


Subject(s)
Animals, Wild , COVID-19 , Cities , Animals , Mice , Rats/virology , COVID-19/epidemiology , Animals, Wild/virology , SARS-CoV-2 , Peromyscus/virology , Feces/virology , Rodent Diseases/virology , Rodent Diseases/epidemiology , Antibodies, Neutralizing/blood
2.
J Anim Ecol ; 93(6): 650-653, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38706185

ABSTRACT

Research Highlight: Mistrick, J., Veitch, J. S. M., Kitchen, S. M., Clague, S., Newman, B. C., Hall, R. J., Budischak, S. A., Forbes, K. M., & Craft, M. E. (2024). Effects of food supplementation and helminth removal on space use and spatial overlap in wild rodent populations. Journal of Animal Ecology. http://doi.org/10.1111/1365-2656.14067. The spread of pathogens has been of long-standing interest, even before dramatic outbreaks of avian influenza and the coronavirus pandemic spiked broad public interest. However, the dynamics of pathogen spread in wild populations are complex, with multiple effects shaping where animals go (their space use), population density and, more fundamentally, the resultant patterns of contacts (direct or indirect) among individuals. Thus, experimental studies exploring the dynamics of contact under different sets of conditions are needed. In the current field study, Mistrick et al. (2024) used a multifactorial experimental design, manipulating food availability and individual pathogen infection state in wild bank voles (Clethrionomys glareolus). They found that while food availability, individual traits and seasonality can affect how far individual voles moved, the degree of overlap between individual voles remained largely the same despite a high variation in population density-which itself was affected by food availability. These results highlight how biotic and abiotic factors can shape patterns of space use and balance the level of spatial overlap through multiple pathways.


Subject(s)
Arvicolinae , Animals , Rodent Diseases/epidemiology , Rodent Diseases/parasitology , Rodent Diseases/virology , Prevalence , Animals, Wild , Male , Female
3.
PLoS Negl Trop Dis ; 18(5): e0012142, 2024 May.
Article in English | MEDLINE | ID: mdl-38739651

ABSTRACT

BACKGROUND: Seoul virus (SEOV) is an orthohantavirus primarily carried by rats. In humans, it may cause hemorrhagic fever with renal syndrome (HFRS). Its incidence is likely underestimated and given the expansion of urban areas, a better knowledge of SEOV circulation in rat populations is called for. Beyond the need to improve human case detection, we need to deepen our comprehension of the ecological, epidemiological, and evolutionary processes involved in the transmission of SEOV. METHODOLOGY / PRINCIPAL FINDINGS: We performed a comprehensive serological and molecular characterization of SEOV in Rattus norvegicus in a popular urban park within a large city (Lyon, France) to provide essential information to design surveillance strategies regarding SEOV. We sampled rats within the urban park of 'La Tête d'Or' in Lyon city from 2020 to 2022. We combined rat population genetics, immunofluorescence assays, SEOV high-throughput sequencing (S, M, and L segments), and phylogenetic analyses. We found low structuring of wild rat populations within Lyon city. Only one sampling site within the park (building created in 2021) showed high genetic differentiation and deserves further attention. We confirmed the circulation of SEOV in rats from the park with high seroprevalence (17.2%) and high genetic similarity with the strain previously described in 2011 in Lyon city. CONCLUSION/SIGNIFICANCE: This study confirms the continuous circulation of SEOV in a popular urban park where the risk for SEOV transmission to humans is present. Implementing a surveillance of this virus could provide an efficient early warning system and help prepare risk-based interventions. As we reveal high gene flow between rat populations from the park and the rest of the city, we advocate for SEOV surveillance to be conducted at the scale of the entire city.


Subject(s)
Hemorrhagic Fever with Renal Syndrome , Parks, Recreational , Phylogeny , Seoul virus , Animals , Seoul virus/genetics , Seoul virus/isolation & purification , Seoul virus/classification , Rats/virology , France/epidemiology , Hemorrhagic Fever with Renal Syndrome/epidemiology , Hemorrhagic Fever with Renal Syndrome/virology , Hemorrhagic Fever with Renal Syndrome/veterinary , Hemorrhagic Fever with Renal Syndrome/transmission , Animals, Wild/virology , Humans , Cities/epidemiology , Rodent Diseases/virology , Rodent Diseases/epidemiology
4.
Nat Commun ; 15(1): 3589, 2024 Apr 27.
Article in English | MEDLINE | ID: mdl-38678025

ABSTRACT

The black rat (Rattus rattus) is a globally invasive species that has been widely introduced across Africa. Within its invasive range in West Africa, R. rattus may compete with the native rodent Mastomys natalensis, the primary reservoir host of Lassa virus, a zoonotic pathogen that kills thousands annually. Here, we use rodent trapping data from Sierra Leone and Guinea to show that R. rattus presence reduces M. natalensis density within the human dwellings where Lassa virus exposure is most likely to occur. Further, we integrate infection data from M. natalensis to demonstrate that Lassa virus zoonotic spillover risk is lower at sites with R. rattus. While non-native species can have numerous negative effects on ecosystems, our results suggest that R. rattus invasion has the indirect benefit of decreasing zoonotic spillover of an endemic pathogen, with important implications for invasive species control across West Africa.


Subject(s)
Disease Reservoirs , Introduced Species , Lassa Fever , Lassa virus , Murinae , Zoonoses , Animals , Lassa virus/pathogenicity , Lassa virus/physiology , Lassa Fever/transmission , Lassa Fever/epidemiology , Lassa Fever/virology , Lassa Fever/veterinary , Disease Reservoirs/virology , Humans , Rats , Murinae/virology , Zoonoses/virology , Zoonoses/transmission , Zoonoses/epidemiology , Sierra Leone/epidemiology , Guinea/epidemiology , Ecosystem , Rodent Diseases/virology , Rodent Diseases/epidemiology , Rodent Diseases/transmission
5.
J Anim Ecol ; 93(6): 663-675, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38494654

ABSTRACT

Mathematical models highlighted the importance of pathogen-mediated invasion, with the replacement of red squirrels by squirrelpox virus (SQPV) carrying grey squirrels in the UK, a well-known example. In this study, we combine new epidemiological models, with a range of infection characteristics, with recent longitudinal field and experimental studies on the SQPV dynamics in red and grey squirrel populations to better infer the mechanistic basis of the disease interaction. A key finding is that a model with either partial immunity or waning immunity and reinfection, where individuals become seropositive on the second exposure to infection, that up to now has been shown in experimental data only, can capture the key aspects of the field study observations. By fitting to SQPV epidemic observations in isolated red squirrel populations, we can infer that SQPV transmission between red squirrels is significantly (4×) higher than the transmission between grey squirrels and as a result our model shows that disease-mediated replacement of red squirrels by greys is considerably more rapid than replacement in the absence of SQPV. Our findings recover the key results of the previous model studies, which highlights the value of simple strategic models that are appropriate when there are limited data, but also emphasise the likely complexity of immune interactions in wildlife disease and how models can help infer disease processes from field data.


Subject(s)
Poxviridae Infections , Sciuridae , Animals , Sciuridae/virology , Sciuridae/immunology , Sciuridae/physiology , United Kingdom/epidemiology , Poxviridae Infections/veterinary , Poxviridae Infections/transmission , Poxviridae Infections/virology , Poxviridae Infections/immunology , Poxviridae Infections/epidemiology , Rodent Diseases/virology , Rodent Diseases/transmission , Rodent Diseases/immunology , Rodent Diseases/epidemiology , Models, Biological , Poxviridae/physiology , Poxviridae/immunology , Introduced Species
6.
Vet Res Commun ; 48(3): 1803-1812, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38243141

ABSTRACT

Virus monitoring in small mammals is central to the design of epidemiological control strategies for rodent-borne zoonotic viruses. Synanthropic small mammals are versatile and may be potential carriers of several microbial agents. In the present work, a total of 330 fecal samples of small mammals were collected at two sites in the North of Portugal and screened for zoonotic hepatitis E virus (HEV, species Paslahepevirus balayani). Synanthropic small mammal samples (n = 40) were collected in a city park of Porto and belonged to the species Algerian mouse (Mus spretus) (n = 26) and to the greater white-toothed shrew (Crocidura russula) (n = 14). Furthermore, additional samples were collected in the Northeast region of Portugal and included Algerian mouse (n = 48), greater white-toothed shrew (n = 47), wood mouse (Apodemus sylvaticus) (n = 43), southwestern water vole (Arvicola sapidus) (n = 52), Cabrera's vole (Microtus cabrerae) (n = 49) and Lusitanian pine vole (Microtus lusitanicus) (n = 51). A nested RT-PCR targeting a part of open reading frame (ORF) 2 region of the HEV genome was used followed by sequencing and phylogenetic analysis. HEV RNA was detected in one fecal sample (0.3%; 95% confidence interval, CI: 0.01-1.68) from a synanthropic Algerian mouse that was genotyped as HEV-3, subgenotype 3e. This is the first study reporting the detection of HEV-3 in a synanthropic rodent, the Algerian mouse. The identified HEV isolate is probably the outcome of either a spill-over infection from domestic pigs or wild boars, or the result of passive viral transit through the intestinal tract. This finding reinforces the importance in the surveillance of novel potential hosts for HEV with a particular emphasis on synanthropic animals.


Subject(s)
Genotype , Hepatitis E virus , Hepatitis E , Phylogeny , Rodent Diseases , Animals , Hepatitis E virus/genetics , Hepatitis E virus/isolation & purification , Hepatitis E virus/classification , Portugal/epidemiology , Mice , Hepatitis E/veterinary , Hepatitis E/virology , Hepatitis E/epidemiology , Rodent Diseases/virology , Rodent Diseases/epidemiology , Feces/virology
7.
Viruses ; 14(2)2022 02 09.
Article in English | MEDLINE | ID: mdl-35215951

ABSTRACT

Rodents are a known reservoir for extensive zoonotic viruses, and also possess a propensity to roost in human habitation. Therefore, it is necessary to identify and catalogue the potentially emerging zoonotic viruses that are carried by rodents. Here, viral metagenomic sequencing was used for zoonotic virus detection and virome characterization on 32 Great gerbils of Rhombomys opimus, Meriones meridianus, and Meiiones Unguiculataus species in Xinjiang, Northwest China. In total, 1848 viral genomes that are potentially pathogenic to rodents and humans, as well as to other wildlife, were identified namely Retro-, Flavi-, Pneumo-, Picobirna-, Nairo-, Arena-, Hepe-, Phenui-, Rhabdo-, Calici-, Reo-, Corona-, Orthomyxo-, Peribunya-, and Picornaviridae families. In addition, a new genotype of rodent Hepacivirus was identified in heart and lung homogenates of seven viscera pools and phylogenetic analysis revealed the closest relationship to rodent Hepacivirus isolate RtMm-HCV/IM2014 that was previously reported to infect rodents from Inner Mongolia, China. Moreover, nine new genotype viral sequences that corresponded to Picobirnaviruses (PBVs), which have a bi-segmented genome and belong to the family Picobirnaviridae, comprising of three segment I and six segment II sequences, were identified in intestines and liver of seven viscera pools. In the two phylogenetic trees that were constructed using ORF1 and ORF2 of segment I, the three segment I sequences were clustered into distinct clades. Additionally, phylogenetic analysis showed that PBV sequences were distributed in the whole tree that was constructed using the RNA-dependent RNA polymerase (RdRp) gene of segment II with high diversity, sharing 68.42-82.67% nucleotide identities with other genogroup I and genogroup II PBV strains based on the partial RdRp gene. By RNA sequencing, we found a high degree of biodiversity of Retro-, Flavi-, Pneumo-, and Picobirnaridae families and other zoonotic viruses in gerbils, indicating that zoonotic viruses are a common presence in gerbils from Xinjiang, China. Therefore, further research is needed to determine the zoonotic potential of these viruses that are carried by other rodent species from different ecosystems and wildlife in general.


Subject(s)
Genome, Viral/genetics , Gerbillinae/virology , RNA Viruses/genetics , Virome/genetics , Animals , Animals, Wild/virology , China , Genetic Variation , Genotype , Gerbillinae/classification , Humans , Metagenomics , Phylogeny , RNA Viruses/classification , RNA Viruses/isolation & purification , RNA Viruses/pathogenicity , RNA, Viral/genetics , Rodent Diseases/virology , Viral Proteins/genetics , Viral Zoonoses/virology
8.
Infect Genet Evol ; 98: 105222, 2022 03.
Article in English | MEDLINE | ID: mdl-35066166

ABSTRACT

Leishmania RNA virus (LRV) is a double-strand RNA virus that was first detected in members of the Leishmania viannia in the New World. The present study aimed to investigate the presence of LRV in the Leishmania species isolated from cutaneous leishmaniasis (CL) patients and rodents as reservoirs in Isfahan province an old zoonotic CL focus, center of Iran. Totally, 85 samples were collected from CL patients (n = 80) and rodent reservoirs (n = 5) from different regions of Isfahan province. Species identification was determined using the PCR-RFLP method. Viral dsRNA was extracted and for observation of 5.3 kb dsRNA on an agarose gel. The presence of LRV was surveyed using the Semi-nested PCR method. For phylogenetic analyzes, 6 samples of 13 isolates were sequenced and a phylogenetic tree was drawn by MEGA7 version 7.0.26. Of 80 Leishmania isolates recovered from the patients with CL, 79 and only one were identified as L. major and L. tropica, respectively. Also, the PCR assays detected four L. major and one L. turanica in five assessed Rhombomys opimus as the rodent reservoirs. LRV was detected only in Leishmania species isolated from 13 species of 85 (15.3%) CL including (L. major, n = 12) and (L. tropica, n = 1). Phylogenetic analysis showed that they were belonged to LRV2 and had the highest similarity with Iranian reference LRV2 in GenBank. Our results showed that the LRV2 was present in cutaneous Leishmania species in Isfahan province is the most historical and touristic province of Iran. In the study LRV was not reported from rodent reservoirs, it may be due to the small sample size. Phylogenetic analysis of current sequences demonstrated that these isolates belong to the registered LRV2 of the Old World.


Subject(s)
Disease Reservoirs/veterinary , Gerbillinae , Leishmaniasis, Cutaneous/veterinary , Leishmaniasis, Cutaneous/virology , Leishmaniavirus/isolation & purification , Rodent Diseases/virology , Adult , Animals , Child , Child, Preschool , Disease Reservoirs/virology , Female , Humans , Iran , Male , Young Adult
9.
Emerg Microbes Infect ; 10(1): 2313-2325, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34792436

ABSTRACT

Lassa virus (LASV), a Risk Group-4 zoonotic haemorrhagic fever virus, affects sub-Saharan African countries. Lassa fever, caused by LASV, results in thousands of annual deaths. Although decades have elapsed since the identification of the Natal multimammate mouse (Mastomys natalensis) as a natural reservoir of LASV, little effort has been made to characterize LASV infection in its reservoir. The natural route of infection and transmission of LASV within M. natalensis remains unknown, and the clinical impact of LASV in M. natalensis is mostly undescribed. Herein, using an outbred colony of M. natalensis, we investigate the replication and dissemination dynamics of LASV in this reservoir following various inoculation routes. Inoculation with LASV, regardless of route, resulted in a systemic infection and accumulation of abundant LASV-RNA in many tissues. LASV infection in the Natal multimammate mice was subclinical, however, clinical chemistry values were transiently altered and immune infiltrates were observed histologically in lungs, spleens and livers, indicating a minor disease with coordinated immune responses are elicited, controlling infection. Intranasal infection resulted in unique virus tissue dissemination dynamics and heightened LASV shedding, compared to subcutaneous inoculation. Our study provides important insights into LASV infection in its natural reservoir using a contemporary infection system, demonstrating that specific inoculation routes result in disparate dissemination outcomes, suggesting intranasal inoculation is important in the maintenance of LASV in the natural reservoir, and emphasizes that selection of the appropriate inoculation route is necessary to examine aspects of viral replication, transmission and responses to zoonotic viruses in their natural reservoirs.


Subject(s)
Disease Reservoirs/veterinary , Lassa Fever/veterinary , Lassa virus/physiology , Murinae/virology , Rodent Diseases/virology , Viral Zoonoses/virology , Virus Shedding , Animals , Disease Reservoirs/virology , Female , Humans , Lassa Fever/transmission , Lassa Fever/virology , Lassa virus/genetics , Male , Murinae/physiology , Rodent Diseases/transmission , Viral Zoonoses/transmission
10.
Viruses ; 13(10)2021 09 29.
Article in English | MEDLINE | ID: mdl-34696393

ABSTRACT

Understanding how perturbations to trophic interactions influence virus-host dynamics is essential in the face of ongoing biodiversity loss and the continued emergence of RNA viruses and their associated zoonoses. Herein, we investigated the role of predator exclusion on rodent communities and the seroprevalence of hantaviruses within the Reserva Natural del Bosque Mbaracayú (RNBM), which is a protected area of the Interior Atlantic Forest (IAF). In the IAF, two sympatric rodent reservoirs, Akodon montensis and Oligoryzomys nigripes, harbor Jaborá and Juquitiba hantavirus (JABV, JUQV), respectively. In this study, we employed two complementary methods for predator exclusion: comprehensive fencing and trapping/removal. The goal of exclusion was to preclude the influence of predation on small mammals on the sampling grids and thereby potentially reduce rodent mortality. Following baseline sampling on three grid pairs with different habitats, we closed the grids and began predator removal. By sampling three habitat types, we controlled for habitat-specific effects, which is important for hantavirus-reservoir dynamics in neotropical ecosystems. Our six-month predator exclusion experiment revealed that the exclusion of terrestrial mammalian predators had little influence on the rodent community or the population dynamics of A. montensis and O. nigripes. Instead, fluctuations in species diversity and species abundances were influenced by sampling session and forest degradation. These results suggest that seasonality and landscape composition play dominant roles in the prevalence of hantaviruses in rodent reservoirs in the IAF ecosystem.


Subject(s)
Disease Reservoirs/virology , Ecosystem , Forests , Hantavirus Infections/epidemiology , Hantavirus Infections/immunology , Orthohantavirus/immunology , Rodentia/virology , Zoonoses/virology , Animals , Female , Hantavirus Pulmonary Syndrome/epidemiology , Host Microbial Interactions , Male , Population Dynamics , Predatory Behavior , Rodent Diseases/epidemiology , Rodent Diseases/immunology , Rodent Diseases/virology , Seroepidemiologic Studies , Zoonoses/epidemiology , Zoonoses/transmission
11.
Viruses ; 13(9)2021 09 15.
Article in English | MEDLINE | ID: mdl-34578423

ABSTRACT

Recent years have witnessed the discovery of several new viruses belonging to the family Arteriviridae, expanding the known diversity and host range of this group of complex RNA viruses. Although the pathological relevance of these new viruses is not always clear, several well-studied members of the family Arteriviridae are known to be important animal pathogens. Here, we report the complete genome sequences of four new arterivirus variants, belonging to two putative novel species. These new arteriviruses were discovered in African rodents and were given the names Lopma virus and Praja virus. Their genomes follow the characteristic genome organization of all known arteriviruses, even though they are only distantly related to currently known rodent-borne arteriviruses. Phylogenetic analysis shows that Lopma virus clusters in the subfamily Variarterivirinae, while Praja virus clusters near members of the subfamily Heroarterivirinae: the yet undescribed forest pouched giant rat arterivirus and hedgehog arterivirus 1. A co-divergence analysis of rodent-borne arteriviruses confirms that they share similar phylogenetic patterns with their hosts, with only very few cases of host shifting events throughout their evolutionary history. Overall, the genomes described here and their unique clustering with other arteriviruses further illustrate the existence of multiple rodent-borne arterivirus lineages, expanding our knowledge of the evolutionary origin of these viruses.


Subject(s)
Arteriviridae/genetics , Genome, Viral , RNA Virus Infections/veterinary , Rodent Diseases/virology , Rodentia/virology , Africa South of the Sahara , Animals , Arteriviridae/classification , Arteriviridae/isolation & purification , Biological Evolution , High-Throughput Nucleotide Sequencing , Phylogeny , RNA Virus Infections/virology , Whole Genome Sequencing
12.
J Virol ; 95(23): e0153421, 2021 11 09.
Article in English | MEDLINE | ID: mdl-34549977

ABSTRACT

Sin Nombre orthohantavirus (SNV), a negative-sense, single-stranded RNA virus that is carried and transmitted by the North American deer mouse Peromyscus maniculatus, can cause infection in humans through inhalation of aerosolized excreta from infected rodents. This infection can lead to hantavirus cardiopulmonary syndrome (HCPS), which has an ∼36% case-fatality rate. We used reverse transcriptase quantitative PCR (RT-qPCR) to confirm SNV infection in a patient and identified SNV in lung tissues in wild-caught rodents from potential sites of exposure. Using viral whole-genome sequencing (WGS), we identified the likely site of transmission and discovered SNV in multiple rodent species not previously known to carry the virus. Here, we report, for the first time, the use of SNV WGS to pinpoint a likely site of human infection and identify SNV simultaneously in multiple rodent species in an area of known host-to-human transmission. These results will impact epidemiology and infection control for hantaviruses by tracing zoonotic transmission and investigating possible novel host reservoirs. IMPORTANCE Orthohantaviruses cause severe disease in humans and can be lethal in up to 40% of cases. Sin Nombre orthohantavirus (SNV) is the main cause of hantavirus disease in North America. In this study, we sequenced SNV from an infected patient and wild-caught rodents to trace the location of infection. We also discovered SNV in rodent species not previously known to carry SNV. These studies demonstrate for the first time the use of virus sequencing to trace the transmission of SNV and describe infection in novel rodent species.


Subject(s)
Disease Reservoirs/virology , Hantavirus Pulmonary Syndrome/transmission , Hantavirus Pulmonary Syndrome/veterinary , Hantavirus Pulmonary Syndrome/virology , Rodent Diseases/transmission , Rodent Diseases/virology , Rodentia/virology , Sin Nombre virus , Animals , Antibodies, Viral , Base Sequence , Female , Orthohantavirus/genetics , Hantavirus Infections/genetics , Hantavirus Infections/transmission , Hantavirus Infections/veterinary , Hantavirus Pulmonary Syndrome/epidemiology , Humans , Lung , Male , Mice , North America , Peromyscus/virology , Prevalence , RNA, Viral/genetics , Rodent Diseases/epidemiology , Sin Nombre virus/genetics , White People , Whole Genome Sequencing
13.
J Gen Virol ; 102(9)2021 09.
Article in English | MEDLINE | ID: mdl-34486970

ABSTRACT

Recently, murine kobuvirus (MuKV), a novel member of the family Picornaviridae, was identified in faecal samples of Rattus norvegicus in China. The limited information on the circulation of MuKV in other murine rodent species prompted us to investigate its prevalence and conduct a genetic characterization of MuKV in Rattus losea, Rattus tanezumi and Rattus norvegicus in China. Between 2015 and 2017, 243 faecal samples of these three murine rodent species from three regions in southern China were screened for the presence of MuKV. The overall prevalence was 23.0% (56/243). Three complete MuKV polyprotein sequences were acquired, and the genome organization was determined. Phylogenetic analyses suggested that our sequences were closely related to Chinese strains and belong to the species Aichivirus A in the genus Kobuvirus. Additional studies are required to understand the true prevalence of MuKV in murine rodent populations in China.


Subject(s)
Feces/virology , Kobuvirus/genetics , Picornaviridae Infections/veterinary , Rats/virology , Rodent Diseases/virology , Animals , China/epidemiology , Genome, Viral , Kobuvirus/isolation & purification , Phylogeny , Picornaviridae Infections/epidemiology , Picornaviridae Infections/virology , Polyproteins/genetics , Prevalence , Rodent Diseases/epidemiology , Viral Proteins/genetics
14.
Viruses ; 13(7)2021 07 12.
Article in English | MEDLINE | ID: mdl-34372549

ABSTRACT

Hantaviruses are harbored by multiple small mammal species in Asia, Europe, Africa, and the Americas. To ascertain the geographic distribution and virus-host relationships of rodent-borne hantaviruses in Japan, Vietnam, Myanmar, and Madagascar, RNAlater™-preserved lung tissues of 981 rodents representing 40 species, collected in 2011-2017, were analyzed for hantavirus RNA by RT-PCR. Our data showed Hantaan orthohantavirus Da Bie Shan strain in the Chinese white-bellied rat (Niviventer confucianus) in Vietnam, Thailand; orthohantavirus Anjo strain in the black rat (Rattus rattus) in Madagascar; and Puumala orthohantavirus Hokkaido strain in the grey-sided vole (Myodes rufocanus) in Japan. The Hokkaido strain of Puumala virus was also detected in the large Japanese field mouse (Apodemus speciosus) and small Japanese field mouse (Apodemus argenteus), with evidence of host-switching as determined by co-phylogeny mapping.


Subject(s)
Hantavirus Infections/epidemiology , Rodent Diseases/epidemiology , Rodent Diseases/virology , Animals , Arvicolinae/virology , Orthohantavirus/pathogenicity , Hantavirus Infections/veterinary , Hantavirus Infections/virology , Japan , Madagascar , Mice , Murinae/virology , Phylogeny , Puumala virus/pathogenicity , Rats , Rodentia/virology , Vietnam
15.
Viruses ; 13(8)2021 07 26.
Article in English | MEDLINE | ID: mdl-34452318

ABSTRACT

Finland has the highest incidence of hantavirus infections globally, with a significant impact on public health. The large coverage of boreal forests and the cyclic dynamics of the dominant forest rodent species, the bank vole Myodes glareolus, explain most of this. We review the relationships between Puumala hantavirus (PUUV), its host rodent, and the hantavirus disease, nephropathia epidemica (NE), in Finland. We describe the history of NE and its diagnostic research in Finland, the seasonal and multiannual cyclic dynamics of PUUV in bank voles impacting human epidemiology, and we compare our northern epidemiological patterns with those in temperate Europe. The long survival of PUUV outside the host and the life-long shedding of PUUV by the bank voles are highlighted. In humans, the infection has unique features in pathobiology but rarely long-term consequences. NE is affected by specific host genetics and risk behavior (smoking), and certain biomarkers can predict the outcome. Unlike many other hantaviruses, PUUV causes a relatively mild disease and is rarely fatal. Reinfections do not exist. Antiviral therapy is complicated by the fact that when symptoms appear, the patient already has a generalized infection. Blocking vascular leakage measures counteracting pathobiology, offer a real therapeutic approach.


Subject(s)
Hantavirus Infections/epidemiology , Hantavirus Infections/virology , Orthohantavirus/genetics , Research , Rodent Diseases/virology , Animals , Antibodies, Viral/blood , Arvicolinae/virology , Europe/epidemiology , Finland/epidemiology , Orthohantavirus/immunology , Orthohantavirus/pathogenicity , Hantavirus Infections/immunology , Hantavirus Infections/transmission , Humans , Incidence , Risk Factors , Rodent Diseases/transmission , Seasons
16.
Viruses ; 13(6)2021 06 11.
Article in English | MEDLINE | ID: mdl-34208398

ABSTRACT

Tula orthohantavirus (TULV) is a rodent-borne hantavirus with broad geographical distribution in Europe. Its major reservoir is the common vole (Microtus arvalis), but TULV has also been detected in closely related vole species. Given the large distributional range and high amplitude population dynamics of common voles, this host-pathogen complex presents an ideal system to study the complex mechanisms of pathogen transmission in a wild rodent reservoir. We investigated the dynamics of TULV prevalence and the subsequent potential effects on the molecular evolution of TULV in common voles of the Central evolutionary lineage. Rodents were trapped for three years in four regions of Germany and samples were analyzed for the presence of TULV-reactive antibodies and TULV RNA with subsequent sequence determination. The results show that individual (sex) and population-level factors (abundance) of hosts were significant predictors of local TULV dynamics. At the large geographic scale, different phylogenetic TULV clades and an overall isolation-by-distance pattern in virus sequences were detected, while at the small scale (<4 km) this depended on the study area. In combination with an overall delayed density dependence, our results highlight that frequent, localized bottleneck events for the common vole and TULV do occur and can be offset by local recolonization dynamics.


Subject(s)
Arvicolinae/virology , Evolution, Molecular , Orthohantavirus/genetics , Rodent Diseases/virology , Animals , Female , Germany/epidemiology , Male , Rodent Diseases/epidemiology , Seroepidemiologic Studies
17.
Viruses ; 13(6)2021 06 02.
Article in English | MEDLINE | ID: mdl-34199600

ABSTRACT

In 2012, Tigray orthohantavirus was discovered in Ethiopia, but its seasonal infection in small mammals, and whether it poses a risk to humans was unknown. The occurrence of small mammals, rodents and shrews, in human inhabitations in northern Ethiopia is affected by season and presence of stone bunds. We sampled small mammals in two seasons from low- and high-density stone bund fields adjacent to houses and community-protected semi-natural habitats in Atsbi and Hagere Selam, where Tigray orthohantavirus was first discovered. We collected blood samples from both small mammals and residents using filter paper. The presence of orthohantavirus-reactive antibodies in blood was then analyzed using immunofluorescence assay (human samples) and enzyme linked immunosorbent assays (small mammal samples) with Puumala orthohantavirus as antigen. Viral RNA was detected by RT-PCR using small mammal blood samples. Total orthohantavirus prevalence (antibodies or virus RNA) in the small mammals was 3.37%. The positive animals were three Stenocephalemys albipes rats (prevalence in this species = 13.04%). The low prevalence made it impossible to determine whether season and stone bunds were associated with orthohantavirus prevalence in the small mammals. In humans, we report the first detection of orthohantavirus-reactive IgG antibodies in Ethiopia (seroprevalence = 5.26%). S. albipes lives in close proximity to humans, likely increasing the risk of zoonotic transmission.


Subject(s)
Antibodies, Viral/blood , Disease Reservoirs/virology , Hantavirus Infections/epidemiology , Hantavirus Infections/immunology , Orthohantavirus/immunology , Rodent Diseases/immunology , Animals , Cross-Sectional Studies , Ethiopia/epidemiology , Female , Orthohantavirus/genetics , Hantavirus Infections/transmission , Humans , Immunoglobulin G/blood , Male , Prevalence , RNA, Viral/genetics , Rats , Risk Factors , Rodent Diseases/transmission , Rodent Diseases/virology , Rural Population
18.
Viruses ; 13(6)2021 05 27.
Article in English | MEDLINE | ID: mdl-34072112

ABSTRACT

Hantavirus pulmonary syndrome (HPS) is an often-fatal disease caused by New World hantaviruses, such as Sin Nombre orthohantavirus (SNV). In the US, >800 cases of HPS have been confirmed since it was first discovered in 1993, of which 43 were reported from the state of Montana. The primary cause of HPS in the US is SNV, which is primarily found in the reservoir host Peromyscus maniculatus (deer mouse). The reservoir host covers most of the US, including Montana, where multiple studies found SNV in local deer mouse populations. This study aimed to check the prevalence of SNV in the deer mice at popular recreation sites throughout the Bitterroot Valley in Western Montana as compared to previous studies in western Montana. We found high prevalence (up to 20%) of deer mice positive for SNV RNA in the lungs. We were unable to obtain a SNV tissue culture isolate from the lungs but could passage SNV from lung tissue into naïve deer mice. Our findings demonstrate continuing circulation of SNV in western Montana.


Subject(s)
Disease Reservoirs/virology , Hantavirus Pulmonary Syndrome/epidemiology , Peromyscus/virology , Rodent Diseases/epidemiology , Rodent Diseases/virology , Animals , Antibodies, Viral/blood , Lung/virology , Montana/epidemiology , RNA, Viral/analysis , RNA, Viral/genetics
19.
Viruses ; 13(6)2021 05 31.
Article in English | MEDLINE | ID: mdl-34072819

ABSTRACT

Puumala hantavirus (PUUV), carried and spread by the bank vole (Myodes glareolus), causes a mild form of hemorrhagic fever with renal syndrome (HFRS) called nephropathia epidemica (NE). Acute high fever, acute kidney injury (AKI), thrombocytopenia, and hematuria are typical features of this syndrome. In addition, headache, blurred vision, insomnia, vertigo, and nausea are commonly associated with the disease. This review explores the mechanisms and presentations of ocular and central nervous system involvement in acute NE.


Subject(s)
Central Nervous System Diseases/virology , Eye Diseases/virology , Hemorrhagic Fever with Renal Syndrome/complications , Puumala virus/pathogenicity , Animals , Antibodies, Viral/blood , Arvicolinae/virology , Disease Reservoirs/virology , Humans , Population Dynamics , Rodent Diseases/transmission , Rodent Diseases/virology
20.
Viruses ; 13(5)2021 05 07.
Article in English | MEDLINE | ID: mdl-34067011

ABSTRACT

Natural hosts of most arenaviruses are rodents. The human-pathogenic Lassa virus and several non-pathogenic arenaviruses such as Morogoro virus (MORV) share the same host species, namely Mastomys natalensis (M. natalensis). In this study, we investigated the history of infection and virus transmission within the natural host population. To this end, we infected M. natalensis at different ages with MORV and measured the health status of the animals, virus load in blood and organs, the development of virus-specific antibodies, and the ability of the infected individuals to transmit the virus. To explore the impact of the lack of evolutionary virus-host adaptation, experiments were also conducted with Mobala virus (MOBV), which does not share M. natalensis as a natural host. Animals infected with MORV up to two weeks after birth developed persistent infection, seroconverted and were able to transmit the virus horizontally. Animals older than two weeks at the time of infection rapidly cleared the virus. In contrast, MOBV-infected neonates neither developed persistent infection nor were able to transmit the virus. In conclusion, we demonstrate that MORV is able to develop persistent infection in its natural host, but only after inoculation shortly after birth. A related arenavirus that is not evolutionarily adapted to M. natalensis is not able to establish persistent infection. Persistently infected animals appear to be important to maintain virus transmission within the host population.


Subject(s)
Arenaviridae Infections/veterinary , Arenavirus/physiology , Disease Reservoirs/virology , Murinae/virology , Animals , Animals, Newborn , Arenavirus/classification , Host Specificity , Rodent Diseases/virology , Virus Replication
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