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1.
Microb Genom ; 9(2)2023 02.
Article in English | MEDLINE | ID: mdl-36825878

ABSTRACT

Salmonella Paratyphi B infections in England are the least common imported typhoidal infection but can still cause invasive disease. Sentinel surveillance at the reference laboratory detected an outbreak from Iraq due to reported travel history, enabling enhanced PCR testing for a quick diagnosis.


Subject(s)
Paratyphoid Fever , Salmonella paratyphi B , Humans , Salmonella paratyphi B/genetics , Paratyphoid Fever/epidemiology , Sentinel Surveillance , Iraq , Mass Gatherings , Genomics , Disease Outbreaks
3.
Pediatr Infect Dis J ; 40(10): e374-e378, 2021 10 01.
Article in English | MEDLINE | ID: mdl-34321443

ABSTRACT

BACKGROUND: Salmonella Paratyphi B (Paratyphoid B) is a rare infection and a notifiable disease in England. Disease is typically mild, and chronic carriage in children has been described in endemic countries. Almost all cases in England are imported, with very few cases of community transmission reported. METHODS: The aim of this work was to describe an unusual cluster of Paratyphoid B cases transmitted within England, examining clinical, epidemiologic and microbiologic data. Detailed phylogenetic analysis is presented to corroborate public health epidemiologic links between cases. RESULTS: One child had recently returned from an endemic area and had mild gastrointestinal symptoms. One year later, 2 other children with no travel history developed invasive disease requiring hospitalization. Epidemiologic links confirmed person-to-person spread between these three cases. All isolates of S. Paratyphi B (n = 93) received by the Gastrointestinal Bacteria Reference Unit between 2014 and 2019 were typed using whole genome sequencing. Three cases of Paratyphoid B were identified in the same geographical location over a 2-year period. S. Paratyphi B strains isolated from the stool and blood of the three cases were closely linked (0-5 single-nucleotide polymorphisms) using whole genome sequencing. CONCLUSIONS: This case series highlights the potential public health risks of paratyphoid B and the range of pediatric complications associated with this illness, especially in younger children. Although rare, chronic carriage of Paratyphoid B can lead to transmission in nonendemic areas and should be considered in all children presenting with signs of enteric fever even where there is no history of foreign travel.


Subject(s)
Carrier State/drug therapy , Carrier State/microbiology , Paratyphoid Fever/drug therapy , Public Health/standards , Salmonella paratyphi B/genetics , Child, Preschool , England/epidemiology , Female , Humans , Male , Paratyphoid Fever/epidemiology , Paratyphoid Fever/microbiology , Parents , Phylogeny , Risk Factors , Salmonella paratyphi B/drug effects , Salmonella paratyphi B/physiology , Travel , Whole Genome Sequencing
4.
FEMS Microbiol Lett ; 368(7)2021 04 25.
Article in English | MEDLINE | ID: mdl-33830213

ABSTRACT

Salmonellosis is an important worldwide food-borne disease. Increasing resistance to Salmonella spp. has been reported in recent years, and now the prevalence of multidrug-resistant Salmonella spp. is a worldwide problem. This necessitates alternative approaches like phage therapy. This study aimed to isolate bacteriophages specific for Salmonella enterica serovar Paratyphi B and S. enterica serovar Typhimurium isolated from different sources (chicken meat, beef and eggshells). The antibiotic resistance profiles of the bacteria were determined by phenotypic and genotypic methods. The prevalence of extended-spectrum ß-lactamase genes was examined by polymerase chain reaction. In total, 75% of the isolated Salmonella strains were resistant to tetracycline, whereas 70% of them were resistant to azithromycin. All of the isolates from beef were resistant to nalidixic acid. The most common extended-spectrum ß-lactamase genes among the isolates were blaSHV (15%) followed by blaTEM (10%) and blaCTX (5%). Two specific bacteriophages were isolated and characterized. The host range for vB_SparS-ui was Salmonella Paratyphi B, S. enterica serovar Paratyphi A and S. enterica, while that for vB_StyS-sam phage was Salmonella Typhimurium and S. enterica serovar Enteritidis. The characteristics of the isolated phages indicate that they are proper candidates to be used to control some foodstuff contaminations and also phage therapy of infected animals.


Subject(s)
Salmonella Phages/isolation & purification , Salmonella Phages/physiology , Salmonella paratyphi B/virology , Salmonella typhimurium/virology , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Drug Resistance, Bacterial/genetics , Genome, Viral/genetics , Host Specificity , Hydrogen-Ion Concentration , Salmonella Phages/ultrastructure , Salmonella enterica/drug effects , Salmonella enterica/genetics , Salmonella enterica/virology , Salmonella paratyphi B/drug effects , Salmonella paratyphi B/genetics , Salmonella typhimurium/drug effects , Salmonella typhimurium/genetics , Serogroup , Sodium Chloride , Temperature , Viral Proteins/chemistry , Viral Proteins/genetics
5.
Emerg Infect Dis ; 26(6): 1164-1173, 2020 06.
Article in English | MEDLINE | ID: mdl-32441616

ABSTRACT

Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to ß-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions.


Subject(s)
Salmonella enterica , Salmonella paratyphi B , Africa , Animals , Anti-Bacterial Agents/pharmacology , Colombia , Costa Rica , Drug Resistance, Bacterial , Drug Resistance, Multiple, Bacterial , Europe/epidemiology , Guatemala , Indonesia , Latin America/epidemiology , Middle East , Netherlands , Phylogeny , Poultry , Salmonella enterica/genetics , Salmonella paratyphi B/genetics
6.
Int J Food Microbiol ; 290: 180-183, 2019 Feb 02.
Article in English | MEDLINE | ID: mdl-30342248

ABSTRACT

Salmonella enterica serovar Paratyphi B (S. Paratyphi B) is a major foodborne pathogen distributed all over the world. However, little is known about the antibiotic resistance, genetic relatedness and virulence profile of S. Paratyphi B isolated from leafy vegetables and the processing environment in Malaysia. In this study, 6 S. Paratyphi B isolates were recovered from different vegetables and drain water of processing areas obtained from fresh food markets in Malaysia. The isolates were characterized by antibiogram, Pulsed-field gel electrophoresis (PFGE) and virulence genes. Antibiotic susceptibility test showed that 3 of the isolates were resistant to the antibiotics. These include S. Paratyphi B SP251 isolate, which was resistant to chloramphenicol, ampicillin, sulfonamides and streptomycin; Isolate SP246 which was resistant to chloramphenicol, sulfonamides and streptomycin and Isolate SP235 showing resistance to nalidixic acid only. PFGE subtyped the 6 S. Paratyphi B isolates into 6 distinct XbaI-pulsotypes, with a wide range of genetic similarity (0.55 to 0.9). The isolates from different sources and fresh food markets location were genetically diverse. Thirteen (tolC, orgA, spaN, prgH, sipB, invA, pefA, sofB, msgA, cdtB, pagC, spiA and spvB) out of the 17 virulence genes tested were found in all of the S. Paratyphi B isolates. Another gene (lpfC), was found only in one isolate (SP051). None of the isolates possessed sifA, sitC and ironN genes. In summary, this study provides unique information on antibiotic resistance, genetic relatedness, and virulotyping of S. Paratyphi B isolated from leafy vegetables and processing environment.


Subject(s)
Genetic Variation , Salmonella paratyphi B/drug effects , Salmonella paratyphi B/genetics , Vegetables/microbiology , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Food-Processing Industry , Genes, Bacterial/genetics , Humans , Malaysia , Microbial Sensitivity Tests , Molecular Typing , Salmonella enterica/isolation & purification , Salmonella paratyphi B/virology , Virulence/genetics
7.
mSphere ; 3(6)2018 11 28.
Article in English | MEDLINE | ID: mdl-30487152

ABSTRACT

Enteric fever is caused by three Salmonella enterica serovars: Typhi, Paratyphi A, and Paratyphi B sensu stricto Although vaccines against two of these serovars are licensed (Typhi) or in clinical development (Paratyphi A), as yet there are no candidates for S. Paratyphi B. To gain genomic insight into these serovars, we sequenced 38 enteric fever-associated strains from Chile and compared these with reference genomes. Each of the serovars was separated genomically based on the core genome. Genomic comparisons identified loci that were aberrant between serovars Paratyphi B sensu stricto and Paratyphi B Java, which is typically associated with gastroenteritis; however, the majority of these were annotated as hypothetical or phage related and thus were not ideal vaccine candidates. With the genomic information in hand, we engineered a live attenuated S. Paratyphi B sensu stricto vaccine strain, CVD 2005, which was capable of protecting mice from both homologous challenge and heterologous challenge with S. Paratyphi B Java. These findings extend our understanding of S. Paratyphi B and provide a viable vaccine option for inclusion in a trivalent live attenuated enteric fever vaccine formulation.IMPORTANCE We developed a live attenuated Salmonella enterica serovar Paratyphi B vaccine that conferred protection in mice against challenge with S Paratyphi B sensu stricto and S Paratyphi B Java, which are the causes of enteric fever and gastroenteritis, respectively. Currently, the incidence of invasive S. Paratyphi B sensu stricto infections is low; however, the development of new conjugate vaccines against other enteric fever serovars could lead to the emergence of S. Paratyphi B to fill the niche left by these other pathogens. As such, an effective S. Paratyphi B vaccine would be a useful tool in the armamentarium against Salmonella infections. Comparative genomics confirmed the serovar-specific groupings of these isolates and revealed that there are a limited number of genetic differences between the sensu stricto and Java strains, which are mostly hypothetical and phage-encoded proteins. The observed level of genomic similarity likely explains why we observe some cross-protection.


Subject(s)
Paratyphoid Fever/prevention & control , Salmonella paratyphi B/immunology , Typhoid-Paratyphoid Vaccines/immunology , Animals , Chile , Disease Models, Animal , Mice , Salmonella paratyphi B/genetics , Salmonella paratyphi B/pathogenicity , Survival Analysis , Treatment Outcome , Typhoid-Paratyphoid Vaccines/administration & dosage , Typhoid-Paratyphoid Vaccines/genetics , Typhoid-Paratyphoid Vaccines/isolation & purification , Vaccines, Attenuated/administration & dosage , Vaccines, Attenuated/genetics , Vaccines, Attenuated/immunology , Vaccines, Attenuated/isolation & purification , Whole Genome Sequencing
10.
J Antimicrob Chemother ; 72(12): 3317-3324, 2017 Dec 01.
Article in English | MEDLINE | ID: mdl-28962028

ABSTRACT

OBJECTIVES: Plasmid-mediated mobilized colistin resistance is currently known to be caused by phosphoethanolamine transferases termed MCR-1, MCR-2, MCR-3 and MCR-4. However, this study focuses on the dissection of a novel resistance mechanism in mcr-1-, mcr-2- and mcr-3-negative d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B (Salmonella Paratyphi B dTa+) isolates with colistin MIC values >2 mg/L. METHODS: A selected isolate from the strain collection of the German National Reference Laboratory for Salmonella was investigated by WGS and bioinformatical analysis to identify novel phosphoethanolamine transferase genes involved in colistin resistance. Subsequently PCR screening, S1-PFGE and DNA-DNA hybridization were performed to analyse the prevalence and location of the identified mcr-5 gene. Cloning and transformation experiments in Escherichia coli DH5α and Salmonella Paratyphi B dTa+ control strains were carried out and the activity of MCR-5 was determined in vitro by MIC testing. RESULTS: In this study, we identified a novel phosphoethanolamine transferase in 14 mcr-1-, mcr-2- and mcr-3-negative Salmonella Paratyphi B dTa+ isolates with colistin MIC values >2 mg/L that were received during 2011-13. The respective gene, further termed as mcr-5 (1644 bp), is part of a 7337 bp transposon of the Tn3 family and usually located on related multi-copy ColE-type plasmids. Interestingly, in one isolate an additional subclone with a chromosomal location of the mcr-5 transposon was observed. CONCLUSIONS: Our findings suggest that the transfer of colistin-resistance-mediating phosphoethanolamine transferase genes from bacterial chromosomes to mobile genetic elements has occurred in multiple independent events raising concern regarding their variety, prevalence and impact on public health.


Subject(s)
Anti-Bacterial Agents/pharmacology , Colistin/pharmacology , DNA Transposable Elements , Drug Resistance, Bacterial , Ethanolaminephosphotransferase/genetics , Salmonella paratyphi B/drug effects , Salmonella paratyphi B/enzymology , Cloning, Molecular , Electrophoresis, Gel, Pulsed-Field , Escherichia coli/enzymology , Escherichia coli/genetics , Ethanolaminephosphotransferase/metabolism , Fermentation , Germany , Microbial Sensitivity Tests , Nucleic Acid Hybridization , Polymerase Chain Reaction , Salmonella paratyphi B/genetics , Salmonella paratyphi B/metabolism , Sequence Analysis, DNA , Tartrates/metabolism , Transformation, Genetic
11.
Trans R Soc Trop Med Hyg ; 110(8): 472-9, 2016 08.
Article in English | MEDLINE | ID: mdl-27618918

ABSTRACT

BACKGROUND: We describe the antimicrobial susceptibility pattern of 100 typhoidal Salmonella isolates recovered from blood cultures and also investigate the association of decreased ciprofloxacin susceptibility with mutations in the genes coding for DNA gyrase and topoisomerase IV in 55 isolates. METHODS: The study was conducted between January 2013 and December 2015 at a tertiary care centre in north India. Antimicrobial susceptibility testing was performed by Kirby-Bauer disc diffusion and E-test. Genotypic characterization included the screening of mutations in the quinolone resistance-determining region of gyrA, gyrB, parC, and parE by PCR. DNA sequence analysis was done for 55 isolates. RESULTS: Out of 100 isolates recovered 80 were S. Typhi, 18 were Paratyphi A and two were Paratyphi B. Eighty two percent (66/80) of S. Typhi and 15/18 S. Paratyphi A showed decreased ciprofloxacin susceptibility. The most common mutation in gyrA led to a change at codon 83 of serine to phenylalanine (n=37) or tyrosine (n=12). Five S. Typhi isolates that were resistant to ciprofloxacin (MICs of 12, 16, 24 and 32 µg/ml) had a second mutation at codon 87 in the gyrA gene changing aspartate to asparagine. CONCLUSIONS: There is a need to urgently review the use of fluoroquinolones for the management of enteric fever in endemic areas.


Subject(s)
Ciprofloxacin/pharmacology , DNA Gyrase/genetics , DNA Topoisomerase IV/genetics , Drug Resistance, Bacterial/genetics , Salmonella paratyphi A/genetics , Salmonella typhi/genetics , Typhoid Fever/microbiology , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Disk Diffusion Antimicrobial Tests , Fluoroquinolones , Genotype , Humans , India , Microbial Sensitivity Tests , Mutation , Polymerase Chain Reaction , Salmonella enterica/drug effects , Salmonella enterica/genetics , Salmonella enterica/isolation & purification , Salmonella paratyphi A/drug effects , Salmonella paratyphi A/isolation & purification , Salmonella paratyphi B/drug effects , Salmonella paratyphi B/genetics , Salmonella paratyphi B/isolation & purification , Salmonella typhi/drug effects , Salmonella typhi/isolation & purification , Sequence Analysis, DNA , Serogroup , Tertiary Care Centers , Typhoid Fever/drug therapy
12.
mBio ; 7(4)2016 08 23.
Article in English | MEDLINE | ID: mdl-27555304

ABSTRACT

UNLABELLED: For 100 years, it has been obvious that Salmonella enterica strains sharing the serotype with the formula 1,4,[5],12:b:1,2-now known as Paratyphi B-can cause diseases ranging from serious systemic infections to self-limiting gastroenteritis. Despite considerable predicted diversity between strains carrying the common Paratyphi B serotype, there remain few methods that subdivide the group into groups that are congruent with their disease phenotypes. Paratyphi B therefore represents one of the canonical examples in Salmonella where serotyping combined with classical microbiological tests fails to provide clinically informative information. Here, we use genomics to provide the first high-resolution view of this serotype, placing it into a wider genomic context of the Salmonella enterica species. These analyses reveal why it has been impossible to subdivide this serotype based upon phenotypic and limited molecular approaches. By examining the genomic data in detail, we are able to identify common features that correlate with strains of clinical importance. The results presented here provide new diagnostic targets, as well as posing important new questions about the basis for the invasive disease phenotype observed in a subset of strains. IMPORTANCE: Salmonella enterica strains carrying the serotype Paratyphi B have long been known to possess Jekyll and Hyde characteristics; some cause gastroenteritis, while others cause serious invasive disease. Understanding what makes up the population of strains carrying this serotype, as well as the source of their invasive disease, is a 100-year-old puzzle that we address here using genomics. Our analysis provides the first high-resolution view of this serotype, placing strains carrying serotype Paratyphi B into the wider genomic context of the Salmonella enterica species. This work reveals a history of disease dating back to the middle ages, caused by a group of distinct lineages with various abilities to cause invasive disease. By quantifying the key genomic differences between the invasive and noninvasive populations, we are able to identify key virulence-related targets that can form the basis of simple, rapid, point-of-care tests.


Subject(s)
Genome, Bacterial , Genotype , Salmonella paratyphi B/classification , Salmonella paratyphi B/genetics , Sequence Analysis, DNA , Animals , Cluster Analysis , Humans , Paratyphoid Fever/microbiology , Paratyphoid Fever/veterinary , Salmonella paratyphi B/isolation & purification
13.
J Food Prot ; 78(4): 802-7, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25836408

ABSTRACT

Salmonella Paratyphi B dT+ variant (also termed Salmonella Java) and Salmonella Heidelberg are pathogens of public health importance that are frequently isolated from poultry. As a step toward implementing the Colombian Integrated Program for Antimicrobial Resistant Surveillance, this study characterized molecular patterns of Salmonella Paratyphi B dT+ and Salmonella Heidelberg isolated from poultry farms, fecal samples, and retail chicken meat using pulsed-field gel electrophoresis (PFGE). The objective of this study was to determine the genetic relationship among isolates and to determine potential geographically predominant genotypes. Based on PFGE analysis, both serovars exhibited high heterogeneity: the chromosomal DNA fingerprints of 82 Salmonella Paratyphi B dT+ isolates revealed 42 PFGE patterns, whereas the 21 isolates of Salmonella Heidelberg revealed 10 patterns. Similar genotypes of both serovars were demonstrated to be present on farms and in retail outlets. For Salmonella Paratyphi B dT+, closely genetically related strains were found among isolates coming from different farms and different integrated poultry companies within two departments (Santander and Cundinamarca) and also from farms located in the two geographically distant departments. For Salmonella Heidelberg, there were fewer farms with genetically related isolates than for Salmonella Paratyphi B dT+. A possible dissemination of similar genotypes of both serovars along the poultry production chain is hypothesized, and some facilitating factors existing in Colombia are reviewed.


Subject(s)
Meat/microbiology , Poultry/microbiology , Salmonella enterica/genetics , Salmonella paratyphi B/genetics , Salmonella/genetics , Animals , Chickens , Colombia/epidemiology , DNA Fingerprinting , DNA, Bacterial/analysis , Electrophoresis, Gel, Pulsed-Field , Feces/microbiology , Genotype , Salmonella enterica/classification , Salmonella enterica/isolation & purification , Salmonella paratyphi B/classification , Salmonella paratyphi B/isolation & purification
14.
FEMS Microbiol Lett ; 355(1): 83-9, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24725227

ABSTRACT

Salmonella enterica serotype Paratyphi B is a globally distributed human-specific pathogen causing paratyphoid fever. The aim of this study was to develop a rapid and reliable polymerase chain reaction (PCR) assay for its detection in food. The SPAB_01124 gene was found to be unique to S. Paratyphi B using comparative genomics. Primers for fragments of the SPAB_01124 gene and the Salmonella-specific invA gene were used in combination to establish a multiplex PCR assay that showed 100% specificity across 45 Salmonella strains (representing 34 serotypes) and 18 non-Salmonella strains. The detection limit was 2.2 CFU mL(-1) of S. Paratyphi B after 12-h enrichment in pure culture. It was shown that co-culture with S. Typhimurium or Escherichia coli up to concentrations of 3.6 × 10(5)  CFU and 3.3 × 10(4)  CFU, respectively, did not interfere with PCR detection of S. Paratyphi B. In artificially contaminated milk, the assay could detect as few as 62 CFU mL(-1) after 8 h of enrichment. In conclusion, comparative genomics was found to be an efficient approach to the mining of pathogen-specific target genes, and the PCR assay that was developed from this provided a rapid, specific, and sensitive method for detection of S. Paratyphi B.


Subject(s)
Food Microbiology/methods , Multiplex Polymerase Chain Reaction/methods , Salmonella paratyphi B/isolation & purification , DNA Primers/genetics , DNA, Bacterial/genetics , Salmonella paratyphi B/genetics , Sensitivity and Specificity
15.
J Antimicrob Chemother ; 69(5): 1257-64, 2014 May.
Article in English | MEDLINE | ID: mdl-24379303

ABSTRACT

OBJECTIVES: To characterize the genetic determinants responsible for extended-spectrum cephalosporin (ESC) resistance of d-tartrate-positive Salmonella enterica subsp. enterica serovar Paratyphi B (serovar Paratyphi B dT+) strains that have emerged in poultry and humans in Belgium during 2008-10. METHODS: The ESC resistance genes among non-redundant serovar Paratyphi B dT+ strains were determined using PCR and sequencing. ESC phenotypes were horizontally transferred by conjugation. Extended-spectrum ß-lactamase (ESBL)- or AmpC-carrying plasmids were typed by PCR-based replicon typing, plasmid multilocus sequence typing and restriction fragment length polymorphism. The genetic relationship of ESC-resistant strains was assessed by XbaI PFGE and multilocus sequence typing. RESULTS: Since 2008, the proportion of serovar Paratyphi B dT+ strains from broiler origin has increased significantly to reach 36.5% in 2010. Among 95 non-duplicate serovar Paratyphi B dT+ strains, 35% were resistant to ESCs. At the same time, a few ESC-resistant serovar Paratyphi B dT+ strains from humans were also detected in Belgium. The most prevalent ESBL gene, blaCTX-M-1, and the AmpC cephalosporinase gene blaCMY-2 were identified on various conjugative IncI1 plasmids of different sequence types and with different additional non-ß-lactam phenotypes. Interestingly, the blaCTX-M-2 gene was located on large multireplicon IncHI2/P plasmids. In addition, highly ESC-resistant strains contained both the ESBL CTX-M-2 and the AmpC CMY-2 encoded by the IncHI2/P and IncI1 plasmids, respectively. All ESC-resistant serovar Paratyphi B dT+ strains belonged to sequence type 28 and showed the common PFGE pattern X8, as well as the chromosomal class 2 integron cassette array dfrA1-sat2-aadA1 previously described in the European poultry-associated serovar Paratyphi B dT+ clonal population. CONCLUSIONS: This study showed that the clonal population of multidrug-resistant serovar Paratyphi B dT+, persisting in broilers in Belgium for the last decade, recently acquired various plasmid-borne ESC resistance determinants, constituting a major concern for public health. Further surveillance programmes and research are an absolute necessity to understand their epidemiology and to propose interventions to limit the spread of ESC- and multidrug-resistant Salmonella spp.


Subject(s)
Paratyphoid Fever/microbiology , Paratyphoid Fever/veterinary , Salmonella paratyphi B/enzymology , Salmonella paratyphi B/isolation & purification , Tartrates/metabolism , beta-Lactamases/genetics , Animals , Belgium , Conjugation, Genetic , Electrophoresis, Gel, Pulsed-Field , Gene Transfer, Horizontal , Humans , Polymerase Chain Reaction , Poultry , Salmonella paratyphi B/genetics , Salmonella paratyphi B/metabolism , Sequence Analysis, DNA
16.
Malays J Pathol ; 34(1): 35-9, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22870596

ABSTRACT

Serotyping is not sufficient to differentiate between Salmonella species that cause paratyphoid fever from the strains that cause milder gastroenteritis as these organisms share the same serotype Salmonella Paratyphi B (S. Paratyphi B). Strains causing paratyphoid fever do not ferment d-tartrate and this key feature was used in this study to determine the prevalence of these strains among the collection of S. Paratyphi B strains isolated from patients in Malaysia. A total of 105 isolates of S. Paratyphi B were discriminated into d-tartrate positive (dT+) and d-tartrate negative (dT) variants by two lead acetate test protocols and multiplex PCR. The lead acetate test protocol 1 differed from protocol 2 by a lower inoculum size and different incubation conditions while the multiplex PCR utilized 2 sets of primers targeting the ATG start codon of the gene STM3356. Lead acetate protocol 1 discriminated 97.1% of the isolates as S. Paratyphi B dT+ and 2.9% as dT while test protocol 2 discriminated all the isolates as S. Paratyphi B dT+. The multiplex PCR test identified all 105 isolates as S. Paratyphi B dT+ strains. The concordance of the lead acetate test relative to that of multiplex PCR was 97.7% and 100% for protocol 1 and 2 respectively. This study showed that S. Paratyphi B dT+ is a common causative agent of gastroenteritis in Malaysia while paratyphoid fever appears to be relatively uncommon. Multiplex PCR was shown to be a simpler, more rapid and reliable method to discriminate S. Paratyphi B than the phenotypic lead acetate test.


Subject(s)
Paratyphoid Fever/microbiology , Salmonella paratyphi B/isolation & purification , Tartrates/metabolism , DNA, Bacterial/analysis , Feces/microbiology , Fermentation , Genotype , Humans , Malaysia , Organometallic Compounds , Paratyphoid Fever/diagnosis , Phenotype , Polymerase Chain Reaction/methods , Salmonella paratyphi B/classification , Salmonella paratyphi B/genetics , Salmonella paratyphi B/metabolism , Serotyping
17.
Appl Environ Microbiol ; 78(20): 7347-57, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22885742

ABSTRACT

In this study, the population structure, incidence, and potential sources of human infection caused by the d-tartrate-fermenting variant of Salmonella enterica serovar Paratyphi B [S. Paratyphi B (dT+)] was investigated. In Germany, the serovar is frequently isolated from broilers. Therefore, a selection of 108 epidemiologically unrelated S. enterica serovar Paratyphi B (dT+) strains isolated in Germany between 2002 and 2010 especially from humans, poultry/poultry meat, and reptiles was investigated by phenotypic and genotypic methods. Strains isolated from poultry and products thereof were strongly associated with multilocus sequence type ST28 and showed antimicrobial multiresistance profiles. Pulsed-field gel electrophoresis XbaI profiles were highly homogeneous, with only a few minor XbaI profile variants. All strains isolated from reptiles, except one, were strongly associated with ST88, another distantly related type. Most of the strains were susceptible to antimicrobial agents, and XbaI profiles were heterogeneous. Strains isolated from humans yielded seven sequence types (STs) clustering in three distantly related lineages. The first lineage, comprising five STs, represented mainly strains belonging to ST43 and ST149. The other two lineages were represented only by one ST each, ST28 and ST88. The relatedness of strains based on the pathogenicity gene repertoire (102 markers tested) was mostly in agreement with the multilocus sequence type. Because ST28 was frequently isolated from poultry but rarely in humans over the 9-year period investigated, overall, this study indicates that in Germany S. enterica serovar Paratyphi B (dT+) poses a health risk preferentially by contact with reptiles and, to a less extent, by exposure to poultry or poultry meat.


Subject(s)
Paratyphoid Fever/epidemiology , Paratyphoid Fever/microbiology , Poultry/microbiology , Reptiles/microbiology , Salmonella paratyphi B/classification , Salmonella paratyphi B/isolation & purification , Tartrates/metabolism , Animals , Cluster Analysis , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Fermentation , Genotype , Germany/epidemiology , Humans , Incidence , Molecular Epidemiology , Molecular Sequence Data , Multilocus Sequence Typing , Phenotype , Salmonella paratyphi B/genetics , Salmonella paratyphi B/metabolism , Serotyping
19.
Southeast Asian J Trop Med Public Health ; 42(5): 1178-89, 2011 Sep.
Article in English | MEDLINE | ID: mdl-22299444

ABSTRACT

Abstract. Salmonella enterica serovar Paratyphi B is known to cause either paratyphoid fever or gastroenteritis. Differentiation of Salmonella ser. Paratyphi B into biotype Java (d-tartrate fermenting, dT+) and biotype Paratyphi B (d-tartrate non-fermenting, dT) is important for Salmonella epidemiology. This study applied a PCR approach to differentiate the two biotypes to augment the conventional biochemical method and to determine the antibiograms and genomic diversity of Malaysian S. Paratyphi B. Among 100 strains tested (clinical, 86; non-humans, 14), only two clinical strains were confirmed as biotype Paratyphi B as indicated by both lead acetate test and PCR. Antibiotic resistance rates were as follows: streptomycin 18%, sulphonamides 13%, ampicillin 10%, chloramphenicol 4%, tetracycline 3%, cefotaxime 2%, cefpodoxime 2%, ceftazidime 2%, gentamicin 1% and trimethoprim 1%. None showed resistance towards amoxicillin-clavulanic acid, ceftiofur, ciprofloxacin, nalidixic acid and trimethoprim-sulphamethoxazole. Seven strains showed multidrug resistance towards 3 or more classes of antimicrobial agents. REP-PCR and PFGE generated 32 and 76 different profiles, respectively. PFGE (D = 0.99) was more discriminative than REP-PCR (D = 0.93) and antimicrobial susceptibility test (D = 0.48) in subtyping the strains. Strains isolated 18 years apart (1982 - 2008) from different localities in Malaysia were clonally related as demonstrated by REP-PCR and PFGE, indicating that these strains were stable and widely distributed. In some clusters, strains isolated from different sources (clinical, food and animal) were grouped together. Thus, biotype Java was the most common biotype of Salmonella ser. Paratyphi B in Malaysia. The PCR approach is highly recommended due to its simplicity, specificity and ease of operation. The level of antimicrobial resistance among Salmonella ser. Paratyphi B remained relatively low in Malaysia but the emergence of resistance to cephalosporins is a cause for concern.


Subject(s)
Drug Resistance, Multiple, Bacterial/genetics , Genetic Variation/genetics , Paratyphoid Fever/microbiology , Salmonella paratyphi B/genetics , Animals , Anti-Bacterial Agents/pharmacology , Drug Resistance, Multiple, Bacterial/drug effects , Electrophoresis, Gel, Pulsed-Field , Fermentation , Food Microbiology , Humans , Malaysia , Organometallic Compounds/metabolism , Paratyphoid Fever/drug therapy , Paratyphoid Fever/genetics , Polymerase Chain Reaction , Salmonella paratyphi B/classification , Salmonella paratyphi B/drug effects , Tartrates/metabolism , Water Microbiology
20.
Epidemiol Mikrobiol Imunol ; 58(1): 25-30, 2009 Feb.
Article in Slovak | MEDLINE | ID: mdl-19358450

ABSTRACT

OBJECTIVE: Salmonella Paratyphi B dT+ (or Salmonella Java) is an emerging public health problem. The study objective was to characterize phenotypically and genotypically 13 human isolates from sporadic cases of infection. MATERIAL AND METHODS: Phenotypic characteristics of 13 human isolates were determined by phage typing, disk diffusion method for testing antimicrobial susceptibility to 11 antibiotics and screening for selected virulence markers, i.e bacterial adherence to xylene, motility and biofilm formation. Genotypic characteristics of the study isolates were determined by PCR with primers for the detection of class 1 integrons, plasmid profile analysis and PFGE for the study of genetic diversity. RESULTS: The study isolates were classified into different phage types, with 3aI or 3aI variant being the most common (61.5%). All study isolates were resistant to streptomycin and sulfisoxazole, two of them were multiresistant (to streptomycin, sulfisoxazole, ampicillin and nalidixic acid). The study isolates showed low hydrophobicity, except for one isolate (2/08), and 5 isolates exhibited motility of > or = 50 mm. High biofilm formation was detected in 5 isolates. Class 1 integrons were not detected in any isolate and plasmid profile analysis revealed the presence of a 90-kb plasmid in 8 isolates. XbaI PFGE analysis differentiated the isolates into 6 pulsotypes (X1, X2, X2a, X3, X4,X5). CONCLUSION: Although the study set of S. Paratyphi B dT+ (S. Java) was small, the increasing emergence of this serovar in the human population in Slovakia is noteworthy. The results of gene analysis in PFGE suggest clonal diversity as well as a clonal link between strains of the predominant phage type. In view of possible increase in antimicrobial resistance and the spread of certain clones, continuous surveillance of strains of S. Paratyphi B dT+ is needed.


Subject(s)
Salmonella paratyphi B/classification , Bacteriophage Typing , Gastroenteritis/microbiology , Genotype , Humans , Microbial Sensitivity Tests , Plasmids , Salmonella paratyphi B/genetics , Salmonella paratyphi B/isolation & purification , Salmonella paratyphi B/physiology
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