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1.
Article in English | MEDLINE | ID: mdl-38728177

ABSTRACT

Two Gram-stain-negative, rod-shaped bacteria, designated as strains KJ10-1T and KJ40-1T, were isolated from marine brown algae. Both strains were catalase-positive, oxidase-positive, and facultative aerobic. Strain KJ10-1T exhibited optimal growth at 25 °C, pH 7.0, and 3 % NaCl, whereas strain KJ40-1T showed optimal growth at 25 °C, pH 7.0, and 2 % NaCl. The respiratory quinones of strain KJ10-1T were ubiquinone-8, ubiquinone-7, menaquinone-7, and methylated menaquinone-7, while the respiratory quinone of strain KJ40-1T was only ubiquinone-8. As major fatty acids, strain KJ10-1T contained C16 : 0, C17 : 1 ω8c, iso-C15 : 0, and summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) and strain KJ40-1T contained C16 : 0 and summed features 3 and 8 (C18 : 1 ω7c and/or C18 : 1 ω6c). The major polar lipids in strain KJ10-1T were phosphatidylethanolamine, phosphatidylglycerol, and an unidentified aminolipid, whereas those in strain KJ40-1T were phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. The DNA G+C contents of strains KJ10-1T and KJ40-1T were 42.1 and 40.8 mol%, respectively. Based on 16S rRNA gene sequences, strains KJ10-1T and KJ40-1T exhibited the closest relatedness to Shewanella saliphila MMS16-UL250T (98.6 %) and Vibrio rumoiensis S-1T (95.4 %), respectively. Phylogenetic analyses, based on both 16S rRNA and 92 housekeeping genes, showed that the strains formed distinct phylogenic lineages within the genera Shewanella and Vibrio. Digital DNA-DNA hybridization and orthologous average nucleotide identity values between strain KJ10-1T and other Shewanella species, as well as between strain KJ40-1T and other Vibrio species, were below the thresholds commonly accepted for prokaryotic species delineation. Based on the phenotypic, chemotaxonomic, and phylogenetic data, strains KJ10-1T and KJ40-1T represent novel species of the genera Shewanella and Vibrio, respectively, for which the names Shewanella phaeophyticola sp. nov. and Vibrio algarum sp. nov. are proposed, respectively. The type strains of S. phaeophyticola and V. algarum are KJ10-1T (=KACC 22589T=JCM 35409T) and KJ40-1T (=KACC 22588T=JCM 35410T), respectively.


Subject(s)
Bacterial Typing Techniques , Base Composition , DNA, Bacterial , Fatty Acids , Phaeophyceae , Phylogeny , RNA, Ribosomal, 16S , Sequence Analysis, DNA , Shewanella , Ubiquinone , Vibrio , Vitamin K 2 , RNA, Ribosomal, 16S/genetics , DNA, Bacterial/genetics , Vibrio/genetics , Vibrio/classification , Vibrio/isolation & purification , Ubiquinone/analogs & derivatives , Shewanella/genetics , Shewanella/isolation & purification , Shewanella/classification , Phaeophyceae/microbiology , Vitamin K 2/analogs & derivatives , Phospholipids , Nucleic Acid Hybridization , Seawater/microbiology
2.
Surg Infect (Larchmt) ; 25(4): 322-328, 2024 May.
Article in English | MEDLINE | ID: mdl-38683555

ABSTRACT

Background: This study aims to elucidate the clinical characteristics of Shewanella-related surgical site infections (SSIs) and assess the risk of mortality in patients by establishing a predictive model. Patients and Methods: A retrospective analysis of medical history and laboratory data of Shewanella-related SSI patients over the past decade was conducted via the electronic medical record (EMR) system. A predictive model for mortality risk in Shewanella-related SSI patients was established using plasma interleukin-6 (IL-6) levels combined with the Howell-PIRO scoring system. Results: Over the past 10 years, 45 strains of Shewanella were isolated from specimens such as bile, drainage fluid, and whole blood in patients with digestive tract SSIs. Among them, 21 of 45 (46.67%) patients underwent malignant tumor resection of the digestive system, 14 of 45 (31.11%) underwent endoscopic retrograde cholangiopancreatography (ERCP) common bile duct exploration or the stone removal, and seven of 45 (15.56%) were trauma repair patients with fractures and abdominal injuries. Among the 45 Shewanella-related SSI patients, 10 died within 30 days of infection, six cases involved infections with more than two other types of bacteria. The combined use of IL-6 and Howell-PIRO scores for mortality risk assessment yielded an receiver operating characteristic (ROC) curve with an area under the curve (AUC) of 0.9350, a positive predictive value of 92.71%, a negative predictive value of 94.58%, a diagnostic sensitivity of 95.35%, and a diagnostic specificity of 92.14%-all higher than the model using IL-6 or Howell-PIRO scores alone. Conclusions: We found that residents in coastal areas faced an increased risk of Shewanella-related SSI. Moreover, the higher the number of concurrent microbial infections occurring alongside Shewanella-related SSI, the greater the mortality rate among patients. The combined application of plasma IL-6 levels and the Howell-PIRO scoring system is beneficial for assessing patient mortality risk and guiding timely and proactive clinical interventions.


Subject(s)
Shewanella , Surgical Wound Infection , Humans , Male , Middle Aged , Retrospective Studies , Shewanella/isolation & purification , Female , Aged , Surgical Wound Infection/epidemiology , Surgical Wound Infection/microbiology , Surgical Wound Infection/mortality , Adult , Aged, 80 and over , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/mortality , Interleukin-6/blood , Young Adult
3.
J Fish Dis ; 47(7): e13942, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38492216

ABSTRACT

Ulcerative dermatitis (UD) is common in ornamental fish collections and is typically associated with a wide range of bacterial aetiologies. Clinical reports describing Shewanella xiamenensis-associated UD are limited, however, despite growing attention to pathogenic Shewanella species in fish. Two out of 95 koi carp with UD were presented for clinical assessment by a commercial collection (n = 3000 fish) and subsequently killed on welfare grounds for necropsy. Both specimens exhibited extensive cutaneous ulcers and coelomic fat necrosis with petechial haemorrhages on post-mortem examination. Shewanella xiamenensis was cultured from ulcerated skin tissues taken from both fish, with consistent intralesional gram-negative rod-like bacteria seen on skin scrape cytology. Histology also confirmed intralesional gram-negative rod-like bacteria within multiple ulcerative and erosive dermatitis lesions, plus myofibre necrosis and necrotising coelomic steatitis, in both specimens. Features associated with impaired generalised osmoregulation secondary to UD were detected within the striated muscle underlying the ulcers, the gills, and the caudal aspects of the kidneys. Additional histological features suggestive of sepsis were also seen in one of the fish. In the interim period, morbidity had increased from 3.2% to around 30% of the entire stock. Following culture results, increased pond water changes were implemented (q.2-3d) and the remaining stock was treated with florfenicol, resulting in complete resolution of UD in the collection (as per client). This article highlights the first description of S. xiamenensis-associated UD in koi carp/diseased ornamental fish in the United Kingdom.


Subject(s)
Carps , Fish Diseases , Gram-Negative Bacterial Infections , Shewanella , Animals , Shewanella/isolation & purification , Fish Diseases/microbiology , Fish Diseases/pathology , Gram-Negative Bacterial Infections/veterinary , Gram-Negative Bacterial Infections/microbiology , Gram-Negative Bacterial Infections/pathology , Skin Ulcer/veterinary , Skin Ulcer/microbiology , Skin Ulcer/pathology , Dermatitis/veterinary , Dermatitis/microbiology , Dermatitis/pathology
4.
Microb Genom ; 8(2)2022 02.
Article in English | MEDLINE | ID: mdl-35143386

ABSTRACT

Shewanella algae is widely distributed in marine and freshwater habitats, and has been proved to be an emerging marine zoonotic and human pathogen. However, the genomic characteristics and pathogenicity of Shewanella algae are unclear. Here, the whole-genome features of 55 S. algae strains isolated from different sources were described. Pan-genome analysis yielded 2863 (19.4 %) genes shared among all strains. Functional annotation of the core genome showed that the main functions are focused on basic lifestyle such as metabolism and energy production. Meanwhile, the phylogenetic tree of the single nucleotide polymorphisms (SNPs) of core genome divided the 55 strains into three clades, with the majority of strains from China falling into the first two clades. As for the accessory genome, 167 genomic islands (GIs) and 65 phage-related elements were detected. The CRISPR-Cas system with a high degree of confidence was predicted in 23 strains. The GIs carried a suite of virulence genes and mobile genetic elements, while prophages contained several transposases and integrases. Horizontal genes transfer based on homology analysis indicated that these GIs and prophages were parts of major drivers for the evolution and the environmental adaptation of S. algae. In addition, a rich putative virulence-associated gene pool was found. Eight classes of antibiotic-associated resistance genes were detected, and the carriage rate of ß-lactam resistance genes was 100 %. In conclusion, S. algae exhibits a high intra-species diversity in the aspects of population structure, virulence-associated genes and potential drug resistance, which is helpful for its evolution in pathogenesis and environmental adaptability.


Subject(s)
Genetic Variation , Genomics , Shewanella/genetics , Adaptation, Biological , Anti-Bacterial Agents/pharmacology , CRISPR-Cas Systems , China , Drug Resistance, Bacterial/genetics , Genome, Bacterial , Genomic Islands , Humans , Microbial Sensitivity Tests , Phylogeny , Prophages/genetics , Shewanella/classification , Shewanella/drug effects , Shewanella/isolation & purification , Species Specificity , Virulence/genetics
5.
Int J Syst Evol Microbiol ; 71(12)2021 Dec.
Article in English | MEDLINE | ID: mdl-34904941

ABSTRACT

A Gram-stain-negative, motile, facultative anaerobic and rod-shaped bacterium, designated strain NR704-98T, was isolated from marine sediment of the northern South China Sea. Cells were positive for oxidase and catalase activity. Growth was observed at 4-30 °C (optimum 20-25 °C), at pH 6-9 (pH 7) and with 0.5-7 % NaCl (2 %). The 16S rRNA gene-based phylogenetic analysis revealed that the nearest phylogenetic neighbours of strain NR704-98T were Shewanella woodyi MS32T (97.9 %), Shewanella hanedai 281T (97.1 %), Shewanella sediminis HAW-EB3T (96.8 %) and Shewanella canadensis HAW-EB2T (96.7 %). Based on the results of phylogenomic analysis, the average nucleotide identity and the digital DNA-DNA hybridization values between strain NR704-98T and the previously mentioned type strains of species of the genus Shewanella were in the range of 74.9-93.1 % and 20.6-51.4 %, respectively. The respiratory quinones were Q-7 and Q-8. The predominant fatty acids (>10 %) of strain NR704-98T were C16 : 0, summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) and iso-C15 : 0. Phosphatidylethanolamine, phosphatidylglycerol, two unidentified aminophospholipids and five unidentified lipids were detected in strain NR704-98T. Based on the phylogenetic and phenotypic characteristics, strain NR704-98T is considered to represent a novel species of the genus Shewanella, for which the name Shewanella nanhaiensis sp. nov. is proposed. The type strain is NR704-98T (=KCTC 82799T=MCCC 1K06091T).


Subject(s)
Geologic Sediments/microbiology , Phylogeny , Seawater/microbiology , Shewanella , Bacterial Typing Techniques , Base Composition , China , DNA, Bacterial/genetics , Fatty Acids/chemistry , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Shewanella/classification , Shewanella/isolation & purification , Vitamin K 2/chemistry
6.
Am J Trop Med Hyg ; 106(1): 60-61, 2021 11 15.
Article in English | MEDLINE | ID: mdl-34781259

ABSTRACT

Shewanella algae is a gram-negative, nonfermenting, oxidase-positive, motile bacillus that is ubiquitous in aquatic ecosystems. Human infections are rare and the immunocompromised are left most vulnerable. Risk factors for this infection include exposure to seawater, consumption of raw seafood, and underlying comorbid conditions such as hepatobiliary disease and chronic cutaneous ulcers. Previously documented cases of S. algae have involved near drownings, contaminated raw shellfish, or wound exposure to seawater, mud, sand, and sewage. This case study is unique in that it describes Shewanella bacteremia without any of these typical preceding exposures. We present a case of S. algae pneumonia and bacteremia in an elderly male patient living at a long-term care facility without any recent open water exposure.


Subject(s)
Pneumonia/microbiology , Shewanella , Aged , Anti-Bacterial Agents/therapeutic use , Gram-Negative Bacterial Infections/diagnosis , Gram-Negative Bacterial Infections/drug therapy , Homes for the Aged , Humans , Male , Nursing Homes , Shewanella/cytology , Shewanella/isolation & purification
7.
mSphere ; 6(5): e0059321, 2021 10 27.
Article in English | MEDLINE | ID: mdl-34643423

ABSTRACT

Although Shewanella spp. are most frequently isolated from marine environments; more rarely, they have been implicated in human infections. Shewanella spp. are also recognized as the origin of genes for carbapenem-hydrolyzing class D ß-lactamases. Due to the spread globally among Enterobacterales in recent years, risk assessments of both clinical and environmental Shewanella strains are urgently needed. In this study, we analyzed the whole-genome sequences of 10 clinical isolates and 13 environmental isolates of Shewanella spp. and compared them with those of Shewanella species strains registered in public databases. In addition, the levels of blaOXA-55-like transcription and ß-lactamase activity of a carbapenem-resistant Shewanella algae isolate were compared with those of carbapenem-susceptible S. algae clade isolates. All clinical isolates were genetically identified as S. algae clade (S. algae, Shewanella chilikensis, and Shewanella carassii), whereas all but one of the environmental isolates were identified as various Shewanella spp. outside the S. algae clade. Although all isolates of the S. algae clade commonly possessed an approximately 12,500-bp genetic region harboring blaOXA-55-like, genetic structures outside this region were different among species. Among S. algae clade isolates, only one showed carbapenem resistance, and this isolate showed a high level of blaOXA-55-like transcription and ß-lactamase activity. Although this study documented the importance of the S. algae clade in human infections and the relationship between enhanced production of OXA-55-like and resistance to carbapenems in S. algae, further studies are needed to elucidate the generalizability of these findings. IMPORTANCEShewanella spp., which are known to carry chromosomally located blaOXA genes, have mainly been isolated from marine environments; however, they can also cause infections in humans. In this study, we compared the molecular characteristics of clinical isolates of Shewanella spp. with those originating from environmental sources. All 10 clinical isolates were genetically identified as members of the Shewanella algae clade (S. algae, S. chilikensis, and S. carassii); however, all but one of the 13 environmental isolates were identified as Shewanella species members outside the S. algae clade. Although all the S. algae clade isolates possessed an approximately 12,500-bp genetic region harboring blaOXA-55-like, only one isolate showed carbapenem resistance. The carbapenem-resistant isolate showed a high level of blaOXA-55-like transcription and ß-lactamase activity compared with the carbapenem-susceptible isolates. To confirm the clinical significance and antimicrobial resistance mechanisms of the S. algae clade members, analysis involving more clinical isolates should be performed in the future.


Subject(s)
Carbapenems/pharmacology , Shewanella/drug effects , Shewanella/genetics , beta-Lactamases/genetics , Anti-Bacterial Agents/pharmacology , Environment , Microbial Sensitivity Tests , Phylogeny , Shewanella/isolation & purification , Whole Genome Sequencing
8.
Article in English | MEDLINE | ID: mdl-34346863

ABSTRACT

Two Gram-stain-negative, motile, facultatively anaerobic, rod-shaped strains, FJAT-53720T and FJAT-53726, were isolated from rhizosphere sediment of plant Cyperus malaccensis. Phylogenetic analysis based on their 16S rRNA gene sequences revealed that strains FJAT-53720T and FJAT-53726 were affiliated to the genus Shewanella (forming an independent cluster) with the highest sequence similarity to the type strain of Shewanella algae. Optimum growth of both strains was observed at 30 °C and pH 7. The respiratory quinones were Q-7, Q-8 and MK-7. The polar lipid profile included phosphatidylmethyl ethanolamine, phosphatidylethanolamine, diphosphatidylglycerol, one unidentified aminophospholipid and four unknown phospholipids. The major fatty acids of strains FJAT-53720T and FJAT-53726 were iso-C15:0, C17 : 1 ω8c and summed feature 3. The genomic DNA G+C content of strain FJAT-53720T was 55.6 mol%. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between FJAT-53720T and FJAT-53726 were 97.4 and 77.9 %, confirming that they were similar species and hence FJAT-53720T was selected for further analysis. The ANI and dDDH values between FJAT-53720T and other members of the genus Shewanella were below the cut-off level (95-96 %; 70 %) for species delineation. Based on the above results, FJAT-53720T represents a novel species of the genus Shewanella, for which the name Shewanella cyperi sp. nov. is proposed. The type strain is FJAT-53720T (=KCTC 82444T=GDMCC 1.2207T).


Subject(s)
Geologic Sediments/microbiology , Phylogeny , Rhizosphere , Shewanella , Anaerobiosis , Bacterial Typing Techniques , Base Composition , China , Cyperus/microbiology , DNA, Bacterial/genetics , Fatty Acids/chemistry , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Shewanella/classification , Shewanella/isolation & purification , Vitamin K 2/chemistry , Wetlands
9.
J Mater Chem B ; 9(21): 4309-4318, 2021 06 03.
Article in English | MEDLINE | ID: mdl-34013947

ABSTRACT

In this study, the electrospinning technique is shown to be a viable method for the synthesis of a bacteria-encapsulating bioanode. A coaxial setup was designed to yield in one step a bioanode made of two fibers networks: one encapsulating the electroactive bacteria Shewanella oneidensis and the other one providing the necessary conductivity for electron transport throughout the bioelectrode. The electrical conductivity of this "integrated bioanode" (∼10-2 to 10-3 S cm-1) was deemed satisfactory and it was then included into a microbial fuel cells (MFC). The resulting MFC exhibited electricity generation. We further demonstrate that this electrode can be cryodesiccated and still exhibits an electrochemical activity once integrated into the MFC reactor. Its volume current and power densities were similar to those recorded for the fresh electrospun bioanode (up to 3260 A m-3 and 230 W m-3 for the thin cryodesiccated bioanode (∼410 µm)). Such impressive volume current densities for thin electrospun systems may be for instance envisioned to be applied to wearable or paper-based MFCs which require a certain flexibility.


Subject(s)
Bioelectric Energy Sources , Electrochemical Techniques/methods , Electrodes , Equipment Design , Shewanella/isolation & purification , Culture Media , Desiccation , Electrochemical Techniques/instrumentation , Shewanella/metabolism
10.
J Basic Microbiol ; 61(5): 406-418, 2021 May.
Article in English | MEDLINE | ID: mdl-33729617

ABSTRACT

Seaweed oligosaccharides possess great bioactivities. However, different microbial strains are required to degrade multiple polysaccharides due to their limited biodegradability, thereby increasing the cost and complexity of production. Shewanella sp. WPAGA9 was isolated from deep-sea sediments in this study. According to the genomic and biochemical analyses, the extracellular fermentation broth of WPAGA9 had versatile degradation abilities for three typical seaweed polysaccharides including agar, carrageenan, and alginate. The maximum enzyme activities of the extracellular fermentation broth of WPAGA9 were 71.63, 76.4, and 735.13 U/ml for the degradation of agar, alginate, and carrageenan, respectively. Moreover, multiple seaweed oligosaccharides can be produced by the extracellular fermentation broth of WPAGA9 under similar optimum conditions. Therefore, WPAGA9 can simultaneously degrade three types of seaweed polysaccharides under similar conditions, thereby greatly reducing the production cost of seaweed oligosaccharides. This finding indicates that Shewanella sp. WPAGA9 is an ideal biochemical tool for producing multiple active seaweed oligosaccharides at low costs and is also an important participant in the carbon cycle process of the deep-sea environment.


Subject(s)
Fermentation , Geologic Sediments/microbiology , Polysaccharides/metabolism , Seaweed/metabolism , Shewanella/chemistry , Shewanella/metabolism , Agar/metabolism , Alginates/metabolism , Carrageenan/metabolism , Oceans and Seas , Oligosaccharides/metabolism , Polysaccharides/classification , Shewanella/enzymology , Shewanella/isolation & purification
11.
NPJ Biofilms Microbiomes ; 7(1): 9, 2021 01 27.
Article in English | MEDLINE | ID: mdl-33504806

ABSTRACT

Shewanella spp. possess a broad respiratory versatility, which contributes to the occupation of hypoxic and anoxic environmental or host-associated niches. Here, we observe a strain-specific induction of biofilm formation in response to supplementation with the anaerobic electron acceptors dimethyl sulfoxide (DMSO) and nitrate in a panel of Shewanella algae isolates. The respiration-driven biofilm response is not observed in DMSO and nitrate reductase deletion mutants of the type strain S. algae CECT 5071, and can be restored upon complementation with the corresponding reductase operon(s) but not by an operon containing a catalytically inactive nitrate reductase. The distinct transcriptional changes, proportional to the effect of these compounds on biofilm formation, include cyclic di-GMP (c-di-GMP) turnover genes. In support, ectopic expression of the c-di-GMP phosphodiesterase YhjH of Salmonella Typhimurium but not its catalytically inactive variant decreased biofilm formation. The respiration-dependent biofilm response of S. algae may permit differential colonization of environmental or host niches.


Subject(s)
Biofilms/growth & development , Electrons , Shewanella/physiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biofilms/drug effects , Cyclic GMP/analogs & derivatives , Cyclic GMP/metabolism , Dimethyl Sulfoxide/pharmacology , Gene Expression Regulation, Bacterial/drug effects , Mutation , Nitrates/pharmacology , Oxidation-Reduction/drug effects , Oxidoreductases/genetics , Oxidoreductases/metabolism , Shewanella/drug effects , Shewanella/isolation & purification , Signal Transduction/drug effects
12.
Arch Microbiol ; 203(3): 1241-1250, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33140140

ABSTRACT

Ever since the development of the first antibiotic compound with anticancer potential, researchers focused on isolation and characterization of prospective microbial natural products with potential anti-infective and anticancer activities. The present work describes the production of bioactive metabolites by heterotrophic bacteria associated with intertidal seaweeds with potential anti-infective and anticancer activities. The bacteria were isolated in a culture-dependent method and were identified as Shewanella algae MTCC 12715 (KX272635) and Bacillus amyloliquefaciens MTCC 12716 (KX272634) based on combined phenotypic and genotypic methods. Further, the bacteria were screened for their ability to inhibit drug-resistant infectious pathogens and prevent cell proliferation of human liver carcinoma (HepG2) and breast cancer (MCF7) cell lines, without affecting the normal cells. Significant anti-infective activity was observed with bacterial cells and their organic extracts against broad-spectrum multidrug-resistant pathogens, such as vancomycin-resistant Enterococcus faecalis, methicillin-resistant Staphylococcus aureus, Klebsiella pneumonia and Pseudomonas aeruginosa with minimum inhibitory concentration ≤ 3.0 µg mL-1 as compared to the antibiotic agents' chloramphenicol and ampicillin, which were active at ≥ 6.25 mg mL-1. The extracts also exhibited anticancer activity in a dose-responsive pattern against HepG2 (with IC50, half maximal inhibitory concentration ~ 78-83 µg mL-1) and MCF7 (IC50 ~ 45-48 µg mL-1) on tetrazolium bromide screening assay with lesser cytotoxic effects on normal fibroblast (L929) cell lines (IC50 > 100 µg mL-1). The results revealed that seaweed-associated heterotrophic bacteria could occupy a predominant role for a paradigm shift towards the development of prospective anti-infective and anticancer agents.


Subject(s)
Anti-Infective Agents/pharmacology , Antineoplastic Agents/pharmacology , Bacillus amyloliquefaciens/physiology , Biological Products/pharmacology , Seaweed/microbiology , Shewanella/physiology , Anti-Infective Agents/isolation & purification , Antineoplastic Agents/isolation & purification , Bacillus amyloliquefaciens/chemistry , Bacillus amyloliquefaciens/isolation & purification , Biological Products/isolation & purification , Cell Line, Tumor , Cell Proliferation/drug effects , Heterotrophic Processes , Humans , Klebsiella pneumoniae/drug effects , Methicillin-Resistant Staphylococcus aureus/drug effects , Microbial Sensitivity Tests , Prospective Studies , Pseudomonas aeruginosa/drug effects , Shewanella/chemistry , Shewanella/isolation & purification , Vancomycin-Resistant Enterococci/drug effects
13.
ACS Appl Bio Mater ; 4(3): 2009-2019, 2021 03 15.
Article in English | MEDLINE | ID: mdl-35014326

ABSTRACT

Metal-respiring bacteria are frequently used to recycle metal resources by biosynthesizing nanoparticles on its surface in environment treatment. However, further utilization of biogenetic nanoparticles through combining the advantages of both bacteria and nanoparticles is still limited. Herein, biogenetic Au@Ag nanoislands are utilized as the surface-enhanced Raman spectroscopy (SERS) substrate for quantitative detection. Specifically, Au@Ag nanoislands enhance the Raman signal via surface plasmon resonance, while biomolecules (phospholipid, tyrosine, and phenylalanine, etc.) on bacterium serve as an internal standard to eliminate the discrepancy of the target SERS intensity in different hot spots. Gene-controlled biomolecules in bacteria guarantee the reproducibility of this SERS substrate. The generality of this analytical method is demonstrated by determining rhodamine 6G, malachite green, and uric acid. This discovery solves a pervasive problem in SERS analysis through a simple biogenetic nanosystem, which opens up an avenue to address scientific challenges by using versatile organisms from nature.


Subject(s)
Biocompatible Materials/chemistry , Shewanella/isolation & purification , Gold/chemistry , Materials Testing , Particle Size , Silver/chemistry , Spectrum Analysis, Raman
14.
Environ Microbiol ; 23(2): 744-756, 2021 02.
Article in English | MEDLINE | ID: mdl-32657519

ABSTRACT

Shewanella strains are characterized by versatile metabolic capabilities, resulting in their wide distribution in the ocean at different depths. Considering that particle sedimentation is an important dynamic process in the ocean, we hypothesized that hadal Shewanella species evolved from the upper ocean. In this study, we isolated three novel Shewanella strains from deep-sea sediments in the Southwest Indian Ocean. Genome sequencing indicated that strains YLB-06 and YLB-08 represent two novel species in the genus Shewanella. Through phylogenomic analysis, we showed that speciation and genomic changes in marine Shewanella strains are related to water depth. We further confirmed the aforementioned hypothesis and revealed a two-stage process of the evolutionary transition of Shewanella from the upper ocean to the hadal zone by comparative genomics and gene gain/loss analysis. Finally, the transcriptomic analysis demonstrated that recently obtained genes are strictly repressed and may thus play a minor role in the response to environmental changes.


Subject(s)
Biological Evolution , Genome, Bacterial/genetics , Geologic Sediments/microbiology , Shewanella/genetics , Evolution, Molecular , Gene Expression Profiling , Genomics , Indian Ocean , Phylogeny , RNA, Ribosomal, 16S/genetics , Shewanella/classification , Shewanella/isolation & purification , Transcriptome/genetics
15.
Angew Chem Int Ed Engl ; 60(9): 4907-4914, 2021 02 23.
Article in English | MEDLINE | ID: mdl-33188721

ABSTRACT

A bio-coreactant-enhanced electrochemiluminescence (ECL) microscopy realizes the ECL imaging of intracellular structure and dynamic transport. This microscopy uses Ru(bpy)32+ as the electrochemical molecular antenna connecting extracellular and intracellular environments, and uses intracellular biomolecules as the coreactants of ECL reactions via a "catalytic route". Accordingly, intracellular structures are identified without using multiple labels, and autophagy involving DNA oxidative damage is detected using nuclear ECL signals. A time-resolved image sequence discloses the universal edge effect of cellular electroporation due to the influence of the geometric properties of cell membranes on the induced transmembrane voltage. The dynamic transport of Ru(bpy)33+ in the different cellular compartments unveils the heterogeneous intracellular diffusivity correlating with the actin cytoskeleton. In addition to single-cell studies, the bio-coreactant-enhanced ECL microscopy is used to image a slice of a mouse liver and a colony of Shewanella oneidensis MR-1.


Subject(s)
Luminescent Measurements , Microscopy, Fluorescence/methods , Animals , DNA Damage/drug effects , Electrochemical Techniques , Electrodes , HeLa Cells , Humans , Liver/microbiology , Liver/pathology , Mice , Microscopy, Atomic Force , Organometallic Compounds/chemistry , Organometallic Compounds/pharmacology , Reactive Oxygen Species/metabolism , Shewanella/isolation & purification , Single-Cell Analysis
16.
BMJ Case Rep ; 13(12)2020 Dec 10.
Article in English | MEDLINE | ID: mdl-33303499

ABSTRACT

We present a case of recurrent cholangitis caused by Shewanella algae, a lethal, emerging pathogen that clinicians should be made aware of. An 86-year-old man with a history of gastrectomy for peptic ulcer disease and a cerebrovascular accident with known choledocholithiasis presented with recurrent episodes of cholangitis that failed conservative antibiotic treatment regimens. Shewanella has been described to have increasing resistance to piperacillin and tazobactam. Both S. algae and multidrug-resistant Escherichia coli were co-isolated in this patient, which required broader spectrum antibiotics for successful treatment and management. A high index of suspicion is required if the history is suggestive of marine or aquatic exposure, which could expose the patient to this lethal pathogen. Re-thinking and re-taking the history are important cornerstones in refining the diagnosis when faced with recurrent presentations of the same problem.


Subject(s)
Cholangitis/microbiology , Choledocholithiasis/complications , Escherichia coli/isolation & purification , Shewanella/isolation & purification , Aged, 80 and over , Anti-Bacterial Agents/therapeutic use , Cholangiopancreatography, Magnetic Resonance , Cholangitis/drug therapy , Cholecystectomy , Choledocholithiasis/diagnostic imaging , Choledocholithiasis/surgery , Diagnosis, Differential , Humans , Male , Microbial Sensitivity Tests , Recurrence , Ultrasonography
17.
BMC Microbiol ; 20(1): 360, 2020 11 24.
Article in English | MEDLINE | ID: mdl-33234140

ABSTRACT

BACKGROUND: Infections caused by Shewanella spp. have been increasingly reported worldwide. The advances in genomic sciences have enabled better understanding about the taxonomy and epidemiology of this agent. However, the scarcity of DNA sequencing data is still an obstacle for understanding the genus and its association with infections in humans and animals. RESULTS: In this study, we report the first isolation and whole-genome sequencing of a Shewanella algae strain from a swine farm in Brazil using the boot sock method, as well as the resistance profile of this strain to antimicrobials. The isolate was first identified as Shewanella putrefaciens, but after whole-genome sequencing it showed greater similarity with Shewanella algae. The strain showed resistance to 46.7% of the antimicrobials tested, and 26 resistance genes were identified in the genome. CONCLUSIONS: This report supports research made with Shewanella spp. and gives a step forward for understanding its taxonomy and epidemiology. It also highlights the risk of emerging pathogens with high resistance to antimicrobial formulas that are important to public health.


Subject(s)
Farms , Genome, Bacterial/genetics , Shewanella/genetics , Shewanella/isolation & purification , Animals , Anti-Bacterial Agents/pharmacology , Brazil , DNA, Bacterial/genetics , Drug Resistance, Multiple, Bacterial/drug effects , Drug Resistance, Multiple, Bacterial/genetics , Environmental Microbiology , Microbial Sensitivity Tests , Phylogeny , RNA, Ribosomal, 16S/genetics , Shewanella/classification , Shewanella/drug effects , Swine , Virulence Factors/genetics
18.
Comp Immunol Microbiol Infect Dis ; 73: 101545, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32927298

ABSTRACT

Shewanella algae is not only the most commonly reported species in Shewanella human infections but also capable to inhabit a wide variety of habitats. Although there is evidence that quorum sensing is associated with bacterial adaptation to changing environmental conditions, little is known of the quorum sensing system in S. algae. In this study, we conducted the whole genome sequencing of S. algae strains and applied comparative genomics to reveal the core genome. Genes related to the quorum sensing system were identified by integrated bioinformatics analysis. S. algae harbor genes involved in all three main types of autoinducer systems. This study provides insights into the quorum sensing systems in S. algae, which might be valuable in the future study of cell behavior in S. algae.


Subject(s)
Aquatic Organisms/genetics , Genomics/methods , Quorum Sensing/genetics , Shewanella/genetics , Animals , Aquatic Organisms/isolation & purification , Computational Biology , Molecular Sequence Annotation , Phylogeny , Seawater/microbiology , Shewanella/isolation & purification , Taiwan , Whole Genome Sequencing/veterinary
19.
Environ Microbiol Rep ; 12(5): 548-554, 2020 10.
Article in English | MEDLINE | ID: mdl-32776437

ABSTRACT

Shewanella sp., the progenitors of blaOXA-48 -like genes are increasingly reported with the possession of different blaOXA-48 -like variants. This study aims to characterize blaOXA-731 , a new variant of a blaOXA-48 -like gene identified in Shewanella sp. isolated from the aquatic environment in Myanmar. Phylogenetic analysis of the blaOXA-731 sequence with other blaOXA-48 -like variants showed that it has the highest nucleotide identity of 86.09% with blaOXA-48 . However, the active site motifs in OXA-731 were 100% identical to that in OXA-48. Whole-genome sequencing analysis showed that blaOXA-731 is not surrounded by any mobile genetic elements. The genetic context of blaOXA-731 was found as similar to other blaOXA-48 -like genes previously identified in Shewanella sp. S1 nuclease pulsed-field gel electrophoresis followed by Southern blotting confirmed the location of blaOXA-731 in the chromosome of the Shewanella genome. Cloning and expression studies showed that OXA-731 has ß-lactamase activity similar to OXA-48 and OXA-181, but it has no significant carbapenemase activity. Our results showed the significance of blaOXA-48 -like-carrying Shewanella sp. in the spreading of blaOXA-48 -like genes in the community.


Subject(s)
Bacterial Proteins/genetics , Drinking Water/microbiology , Shewanella/enzymology , beta-Lactamases/genetics , Amino Acid Sequence , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/metabolism , Chromosomes, Bacterial/enzymology , Chromosomes, Bacterial/genetics , Microbial Sensitivity Tests , Myanmar , Phylogeny , Sequence Alignment , Shewanella/drug effects , Shewanella/genetics , Shewanella/isolation & purification , beta-Lactamases/metabolism
20.
Antonie Van Leeuwenhoek ; 113(9): 1385-1391, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32656718

ABSTRACT

The purpose of this study was to culture and characterise bacteria from an intact abscess on the skin of a dead Bryde's whale (Balaenoptera edeni) which stranded in the northern Beibu Gulf, China. To grow bacteria, samples from the abscess were added to blood agar. After incubation, yellowish mucous colonies were visualized. The bacterium was firstly recognised as Shewanella algae by the VITEK® 2 System. However, by using 16S rRNA gene sequencing the bacterium was finally identified as S. indica. To characterise the bacterium, antibiotic susceptibility and virulence factors, such as hemolysis and biofilm formation were investigated. The bacterium is capable of ß-hemolysis and biofilm formation and it is also sensitive to several different classes of antibiotics, such as ß-lactams, quinolones, and aminoglycosides. To date there have been no reports of this bacterium causing infections in humans or animals. However, in this study we described the first case of S. indica isolated from an intact abscess on the back of a Bryde's whale.


Subject(s)
Balaenoptera/microbiology , Phylogeny , Shewanella/classification , Animals , Bacterial Proteins/analysis , Bacterial Typing Techniques , Biofilms/growth & development , China , DNA, Bacterial/genetics , Hemolysin Proteins/analysis , Microbial Sensitivity Tests , RNA, Ribosomal, 16S/genetics , Shewanella/isolation & purification
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