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1.
Methods Mol Biol ; 2291: 381-397, 2021.
Article in English | MEDLINE | ID: mdl-33704765

ABSTRACT

Shiga toxin-producing E. coli (STEC) is a common foodborne pathogen in developed countries. STEC generates "attaching and effacing" (AE) lesions on colonic epithelium, characterized by effacement of microvilli and the formation of actin "pedestals" beneath intimately attached bacteria. In addition, STEC are lysogenized with a phage that, upon induction, can produce potent Shiga toxins (Stx), potentially leading to both hemorrhagic colitis and hemolytic uremic syndrome. Investigation of the pathogenesis of this disease has been challenging because STEC does not readily colonize conventional mice.Citrobacter rodentium (CR) is a related mouse pathogen that also generates AE lesions. Whereas CR does not produce Stx, a murine model for STEC utilizes CR lysogenized with an E. coli-derived Stx phage, generating CR(Φstx), which both colonizes conventional mice and readily gives rise to systemic disease. We present here key methods for the use of CR(Φstx) infection as a highly predictable murine model for infection and disease by STEC. Importantly, we detail CR(Φstx) inoculation by feeding, determination of pathogen colonization, production of phage and toxin, and assessment of intestinal and renal pathology. These methods provide a framework for studying STEC-mediated systemic disease that may aid in the development of efficacious therapeutics.


Subject(s)
Bacteriophages , Citrobacter rodentium , Colitis , Gastrointestinal Hemorrhage , Hemolytic-Uremic Syndrome , Intestinal Mucosa , Lysogeny , Shiga Toxins , Shiga-Toxigenic Escherichia coli , Animals , Bacteriophages/genetics , Bacteriophages/metabolism , Citrobacter rodentium/genetics , Citrobacter rodentium/metabolism , Citrobacter rodentium/pathogenicity , Citrobacter rodentium/virology , Colitis/genetics , Colitis/metabolism , Colitis/microbiology , Disease Models, Animal , Gastrointestinal Hemorrhage/genetics , Gastrointestinal Hemorrhage/metabolism , Gastrointestinal Hemorrhage/microbiology , Hemolytic-Uremic Syndrome/genetics , Hemolytic-Uremic Syndrome/metabolism , Hemolytic-Uremic Syndrome/microbiology , Intestinal Mucosa/metabolism , Intestinal Mucosa/microbiology , Mice , Shiga Toxins/biosynthesis , Shiga Toxins/genetics
2.
J Food Biochem ; 43(11): e13035, 2019 11.
Article in English | MEDLINE | ID: mdl-31495947

ABSTRACT

Diarrheagenic Escherichia coli O157 is an important reason for largest food borne inflectional outbreaks. E. coli O157 invades into the food chain through contaminated irrigation water and soil causing infectious diseases to humans. In our previous study, we have evaluated the persistence of E. coli O157 through plate count methods. However, conventional cultural procedures are less sensitive to discriminate the pathogenic strain and are time consuming. Therefore, in the present study we have enumerated the persistence of E. coli O157 in soil and vegetables using specific shiga toxin genes (stx1, stx2) through quantitative PCR. Initially, we have standardized a simple Sephadex-based DNA extraction protocol that could detect 2-3 cells/25g of vegetables. Further, quantitative PCR analysis showed a 103 fold difference in the enumeration of persistence as compared to simple plating techniques. Thus, qPCR-based persistence study can be used for rapid and accurate detection techniques for analyzing E. coli O157 contamination. PRACTICAL APPLICATIONS: Our experiment on E. coli O157 expression could be used as a scale for further studies on E. coli O157 pollution in the cropped soils, additionally the DNA extraction protocol experimented by us could be used in all sensitive quantitative assays, as it could detect the expression in lowest cell loads. However, our methodology is a more reliable and sensitive assay compared to normal cultural methods. Our experiment provides a strong evidence of persistence of E. coli O157 prevailing up to half or full cropping season.


Subject(s)
Escherichia coli O157/genetics , Shiga Toxins/biosynthesis , Vegetables/microbiology , Agricultural Irrigation , Escherichia coli O157/growth & development , Escherichia coli O157/isolation & purification , Escherichia coli O157/metabolism , Fresh Water/microbiology , Real-Time Polymerase Chain Reaction , Soil Microbiology , Vegetables/growth & development
3.
Protein Pept Lett ; 26(3): 227-234, 2019.
Article in English | MEDLINE | ID: mdl-30592251

ABSTRACT

BACKGROUND: Shiga toxins comprise a family of related proteins produced by bacteria Shigella dysenteriae and some strains of Escherichia coli that cause severe clinical manifestations. Severe Shiga toxin intoxication results in Haemolytic-Uremic Syndrome (HUS), up to 50% of HUS patients manifest some degree of renal failure and ~10% of such cases develop permanent renal failure or death. OBJECTIVE: In present research work production of biologically active rStx from non-toxic rStxA and rStxB subunits were established that can be used in many biomedical applications. METHODS: Purification of Shiga toxin from bacteria is a multistep time consuming process resulting in low yield. To overcome this problem, the rStxA and rStxB protein were separately cloned and expressed in E. coli host and purified through affinity chromatography. GST pull-down assay was performed for interaction study between rStxA and pentameric rStxB. The affinity between A and B subunits of reconstituted recombinant Shiga toxin (AB5) was determined by SPR. The biological activity of the toxin was confirmed in Vero cells and mouse lethality assay. RESULTS: The yield of GST-StxA and His6X-StxB obtained after affinity chromatography was estimated to 2 and 5 mg/l, respectively. Samples analyzed in pull down assay revealed two bands of ~58 kDa (rStxA) and ~7.7 kDa (rStxB) on SDS-PAGE. Affinity was confirmed through SPR with KD of 0.85 pM. This rStx produced from 1:5 molar ratio found to be cytotoxic in Vero cell line and resulted lethality in mouse. CONCLUSIONS: Large scale production of rStx using the method can facilitate screening and evaluation of small molecule inhibitors for therapeutics development.


Subject(s)
Bacterial Proteins , Escherichia coli , Shiga Toxins , Shigella dysenteriae/genetics , Animals , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Bacterial Proteins/toxicity , Chlorocebus aethiops , Escherichia coli/genetics , Escherichia coli/metabolism , Mice , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/toxicity , Shiga Toxins/biosynthesis , Shiga Toxins/genetics , Shiga Toxins/isolation & purification , Shiga Toxins/toxicity , Shigella dysenteriae/enzymology , Vero Cells
4.
Bioorg Med Chem ; 26(22): 5792-5803, 2018 12 01.
Article in English | MEDLINE | ID: mdl-30420327

ABSTRACT

Synthetic assembly of sugar moieties and amino acids in order to create "sugar-amino acid hybrid polymers" was accomplished by means of simple radical polymerization of carbohydrate monomers having an amino acid-modified polymerizable aglycon. Amines derived from globotriaoside and lactoside as glycoepitopes were condensed with known carbobenzyloxy derivatives, including Z-Gly, Z-l-Ala and Z-ß-Ala, which had appropriate spacer ability and a chiral center to afford fully protected sugar-amino acid hybrid compounds in good yields. After deprotection followed by acryloylation, the water-soluble glycomonomers were polymerized with or without acrylamide in the presence of a radical initiator in water to give corresponding copolymers and homopolymers, which were shown by SEC analysis to have high molecular weights. Evaluation of the biological activities of the glycopolymers against Shiga toxins (Stxs) was carried out, and the results suggested that glycopolymers having highly clustered globotriaosyl residues had high affinity against Stx2 (KD = 2.7∼4.0 µM) even though other glycopolymers did not show any affinity or showed very weak binding affinity. When Stx1 was used for the same assay, all of the glycopolymers having globotriaosyl residues showed high affinity (KD = 0.30∼1.74 µM). Interestingly, couple of glycopolymers having lactosyl moieties had weaker binding affinity against Stx1. In addition, when cytotoxicity assays were carried out for both Stxs, glycopolymers having highly clustered globotriaosyl residues showed higher affinity than that of the copolymers, and only highly clustered-type glycopolymers displayed neutralization potency against Stx2.


Subject(s)
Escherichia coli O157/metabolism , Polymers/pharmacology , Shiga Toxins/antagonists & inhibitors , Amino Acids/chemistry , Amino Acids/pharmacology , Amino Sugars/chemistry , Amino Sugars/pharmacology , Dose-Response Relationship, Drug , Escherichia coli O157/chemistry , Lactose/chemistry , Lactose/pharmacology , Molecular Structure , Polymers/chemical synthesis , Polymers/chemistry , Shiga Toxins/biosynthesis , Structure-Activity Relationship , Trisaccharides/chemistry , Trisaccharides/pharmacology
5.
Article in English | MEDLINE | ID: mdl-28503491

ABSTRACT

Shiga toxin-producing Escherichia coli (STEC) are pathogens of significant public health concern. Several studies have confirmed that cattle are the main reservoir of STEC in Argentina and other countries. Although Shiga toxins represent the primary virulence factors of STEC, the adherence and colonization of the gut are also important in the pathogenesis of the bacteria. The aim of this study was to analyze and to compare the presence of putative virulence factors codified in plasmid -katP, espP, subA, stcE- and adhesins involved in colonization of cattle -efa1, iha- in 255 native STEC strains isolated from different categories of cattle from different production systems. The most prevalent gene in all strains was espP, and the less prevalent was stcE. katP was highly detected in strains isolated from young and rearing calves (33.3%), while subA was predominant in those isolated from adults (71.21%). Strains from young calves showed the highest percentage of efa1 (72.46%), while iha showed a high distribution in strains from rearing calves and adults (87.04 and 98.48% respectively). It was observed that espP and iha were widely distributed throughout all strains, whereas katP, stcE, and efa1 were more associated with the presence of eae and subA with the eae-negative strains. A great proportion of eae-negative strains were isolated from adults -dairy and grazing farms- and from rearing calves -dairy and feedlot-, while mostly of the eae-positive strains were isolated from dairy young calves. Data exposed indicate a correlation between the category of the animal and the production systems with the presence or absence of several genes implicated in adherence and virulence of STEC.


Subject(s)
Cattle/microbiology , Escherichia coli Infections/veterinary , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/genetics , Virulence Factors/genetics , Virulence/genetics , Adhesins, Bacterial/genetics , Animals , Argentina , Bacterial Toxins/genetics , Escherichia coli Infections/microbiology , Escherichia coli Proteins/genetics , Leucine-Responsive Regulatory Protein/genetics , Metalloendopeptidases/genetics , Plasmids/genetics , Serine Endopeptidases/genetics , Shiga-Toxigenic Escherichia coli/growth & development , Shiga-Toxigenic Escherichia coli/isolation & purification , Shiga-Toxigenic Escherichia coli/pathogenicity , Subtilisins/genetics
6.
Microb Pathog ; 102: 102-108, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27914959

ABSTRACT

Verotoxin-producing E. coli (VTEC) O157:H7 is the dominant serotype isolated from patients with HUS and, Argentina has the highest rate of HUS in the world. Molecular typing had allowed to identify subpopulations related to the origin and virulence of O157:H7 strains. Our aim was to perform a genetic characterization of 43 O157:H7 strains isolated in Argentine mostly from cattle and humans in order to establish the potential public health risk. For it, we used a combination of molecular subtyping methods in order to identify clade 8_rhsA (C3468G), LSPA-6 and virulence profiles and, a cytotoxicity assay on Vero cell. All isolates carried the clade 8 SNP variant and 98% of them belonged to lineage I/II (2% lineage II). Isolates were grouped into eleven nle profiles, 46% were positive for all nle genes, while the remaining isolates, except two, showed incomplete OI-71, particularly lacked nleF. All isolates showed the plasmid profile ehxA-espP-katP-stcE and harbored ehaA, elfA, iha and lpfA variants lpfA1-3 and lpfA2-2 and, ECSP_0242. The frequencies of the remaining ECSP genes were 95% ECSP_2687, 88% ECSP_3286, 86% ECSP_3620, 53% ECSP_2870/2872 and 44% ECSP_1733. All O157:H7 strains, except the isolate identified as lineage II, were cytotoxic on Vero cells. Among Argentinean strains, most genetic markers occur at equal relative frequencies among clinical and bovine isolates, showing diversity mostly in nle genes profiles. The belonging of the isolates to hypervirulent clade 8 and lineage I/II, the high prevalence of nle and putative virulence factors genes, would allow assigning most O157:H7 strains of this region a high risk to public health.


Subject(s)
Cattle Diseases/microbiology , Escherichia coli O157/physiology , Escherichia coli Proteins/genetics , Hemolytic-Uremic Syndrome/microbiology , Shiga Toxins/biosynthesis , Animals , Argentina/epidemiology , Bacterial Adhesion/genetics , Cattle , Cattle Diseases/epidemiology , Cluster Analysis , Escherichia coli O157/classification , Genotype , Hemolytic-Uremic Syndrome/epidemiology , Humans , Phenotype , Plasmids/genetics , Virulence/genetics , Virulence Factors/genetics
7.
J Food Prot ; 78(11): 2085-8, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26555533

ABSTRACT

Shiga toxin (Stx)-producing Escherichia coli (STEC) strains are food- and waterborne pathogens that are often transmitted via beef products or fresh produce. STEC strains cause both sporadic infections and outbreaks, which may result in hemorrhagic colitis and hemolytic uremic syndrome. STEC strains may elaborate Stx1, Stx2, and/or subtypes of those toxins. Epidemiological evidence indicates that STEC that produce subtypes Stx2a, Stx2c, and/or Stx2d are more often associated with serious illness. The Stx2d subtype becomes more toxic to Vero cells after incubation with intestinal mucus or elastase, a process named "activation." Stx2d is not generally found in the E. coli serotypes most commonly connected to STEC outbreaks. However, STEC strains that are stx2d positive can be isolated from foods, an occurrence that gives rise to the question of whether those food isolates are potential human pathogens. In this study, we examined 14 STEC strains from fresh produce that were stx2d positive and found that they all produced the mucus-activatable Stx2d and that a subset of the strains tested were virulent in streptomycin-treated mice.


Subject(s)
Crops, Agricultural/microbiology , Shiga-Toxigenic Escherichia coli/isolation & purification , Animals , Cattle , Chlorocebus aethiops , Escherichia coli Infections/epidemiology , Escherichia coli Proteins , Humans , Meat/microbiology , Mice , Shiga Toxin 2/biosynthesis , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/metabolism , Shiga-Toxigenic Escherichia coli/pathogenicity , Streptomycin/administration & dosage , Vero Cells , Virulence Factors
8.
Toxins (Basel) ; 7(11): 4745-57, 2015 Nov 13.
Article in English | MEDLINE | ID: mdl-26580652

ABSTRACT

A novel procedure for the detection of specific DNA sequences has been developed. This procedure is based on the already known method employing PCR with appropriate primers and a sequence-specific DNA probe labeled with the fluorescent agent 6-carboxylfluorescein (FAM) at the 5' end and the fluorescence quencher BHQ-1 (black hole quencher) at the 3' end. However, instead of the detection of the fluorescence signal with the use of real-time PCR cyclers, fluorescence/luminescence spectrometers or fluorescence polarization readers, as in all previously-reported procedures, we propose visual observation of the fluorescence under UV light directly in the reaction tube. An example for the specific detection of the Shiga toxin-producing Escherichia coli (STEC) strains, by detecting Shiga toxin genes, is demonstrated. This method appears to be specific, simple, rapid and cost effective. It may be suitable for use in research laboratories, as well as in diagnostic units of medical institutions, even those equipped only with a thermocycler and a UV transilluminator, particularly if rapid identification of a pathogen is required.


Subject(s)
DNA, Bacterial/genetics , Shiga Toxins/genetics , Shiga-Toxigenic Escherichia coli/genetics , Coliphages/genetics , Genes, Bacterial/genetics , Polymerase Chain Reaction , Shiga Toxin 1/biosynthesis , Shiga Toxin 1/genetics , Shiga Toxin 2/biosynthesis , Shiga Toxin 2/genetics , Shiga Toxins/analysis , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/metabolism , Spectrophotometry, Ultraviolet
9.
J Ethnopharmacol ; 172: 30-7, 2015 Aug 22.
Article in English | MEDLINE | ID: mdl-26091966

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: Ludwigia octovalvis is an aquatic plant widely distributed throughout the tropical and sub-tropical regions. It is commonly consumed as a health drink and traditionally used for treating various ailments such as dysentery, diarrhea, diabetes, nephritisn and headache. No information is available on its in vivo antibacterial activity against an important foodborne pathogen, Shiga toxin producing Escherichia coli O157:H7. MATERIALS AND METHODS: Male Balb/c mice were orally administered with the extract at doses of 200 or 400mg/kg body weight for one week before the infection with E. coli O157:H7 and continued for 14 consecutive days after infection. Serum antibody (IgA, IgG and IgM) levels were quantified at days 7 and 14 post-challenge by an ADVIA(®) 2400 Clinical Chemistry Auto Analyzer. Nitroblue tetrazolium (NBT) and Ceruloplasmin, as nonspecific immune parameters, were determined enzymatically. RESULTS: A significant increase (p<0.05) in IgA serum level was indicated on the 7th day post-challenge with the pathogen in the experimental group received 400mg/kg of the extract in comparison with other groups. Total IgA serum levels on day 7 post-challenge in groups of PBS negative control, E. coli O157:H7 positive control, E. coli O157:H7+200mg/kg extract group and E. coli O157:H7+400mg/kg extract group were 709.4 ± 149.6, 1655.8 ± 139.7, 1728.6 ± 64.3 and 1971.4 ± 135.6 µg/ml, respectively. Serum IgG and IgM did not significantly change among different groups. The extract administered orally to infected Balb/c mice did not affect the NBT as well as ceruloplasmin levels. CONCLUSIONS: The extract of L. octovalvis contains biologically active principles which increased systemic immune response to E. coli O157:H7 via potentiating the synthesis of IgA antibodies.


Subject(s)
Escherichia coli Infections/immunology , Escherichia coli Infections/microbiology , Escherichia coli O157/drug effects , Immunomodulation/drug effects , Onagraceae/chemistry , Plant Extracts/chemistry , Plant Extracts/pharmacology , Shiga Toxins/biosynthesis , Animals , Escherichia coli Infections/metabolism , Escherichia coli O157/immunology , Escherichia coli O157/metabolism , Lethal Dose 50 , Male , Methanol/chemistry , Mice , Plant Extracts/immunology
10.
Lett Appl Microbiol ; 60(4): 341-6, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25458754

ABSTRACT

UNLABELLED: This study examined the effects of and interactions between pH, aw and temperature on the survival of the top six non-O157 STECs and Escherichia coli O157:H7. All variables significantly affected the survival of all STEC serotypes. However, aw bore the most significant effect, followed by temperature and then pH. Examination of the effect of the interaction between these variables revealed that the interaction between aw and temperature was the most significant followed by the interaction between pH and temperature and then aw and pH. Decrease in aw resulted in population reduction of all serotypes studied. This reduction in population was significantly increased with the increase in temperature and was further significantly enhanced with decreasing pH. Examination of the differences in the survival among the individual serotypes revealed that the response of each serotype to aw or temperature changes was significantly different, while their response to pH changes was similar. Analysis of the relative survival of individual non-O157 STECs to O157:H7 revealed that the survival of O121 and O45 was not significantly different to O157:H7 while O103, O111, O145 and O26 showed less tolerance to the combined treatments, and their survival was significantly different from O157:H7. SIGNIFICANCE AND IMPACT OF THE STUDY: Results of this study estimate the interaction between pH, aw and temperature on the survival of the top six non-O157 STECs relative to Escherichia coli O157:H7 and provide important growth and no-growth condition which will offer risk assessors a means of estimating the likelihood of these pathogens, if present, would grow in response to the interaction between the three variables assessed.


Subject(s)
Cold Temperature , Escherichia coli O157/growth & development , Hot Temperature , Escherichia coli O157/classification , Escherichia coli O157/isolation & purification , Hydrogen-Ion Concentration , Shiga Toxins/biosynthesis , Water
11.
Wei Sheng Yan Jiu ; 43(5): 797-804, 2014 Sep.
Article in Chinese | MEDLINE | ID: mdl-25438538

ABSTRACT

OBJECTIVE: To evaluate the suitability of stx-PCR, Vero cell assay and commercial enzyme immunoassay for detection of Shiga toxin Escherichia coli and to compare sensitivity and specificity of three different methods for detection of Shiga toxin-producing Escherichia coli. METHODS: Using stx-PCR, Vero cell assay and commercial enzyme immunoassay to detect 35 Escherichia coli reference strains and 45 strains isolated from food. RESULTS: The three methods all had good specificity. 31 strains gave positive reaction in the Vero cell assay and in the stx-PCR. The consistency between the Vero cell assay and stx-PCR was 100%. Only 38 strains can be detected by commercial enzyme immunoassay. CONCLUSION: stx-PCR method can serve as a routine rapid detection method in the laboratory. Vero cell assay is recommended to be the gold standard to determine whether the bacteria had the functionally active toxin. Commercial kit was suitable for preliminary rapid detection during clinical testing and outbreaks of food-borne disease.


Subject(s)
Enzyme-Linked Immunosorbent Assay/methods , Escherichia coli Infections/microbiology , Food Microbiology , Polymerase Chain Reaction/methods , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/isolation & purification , Animals , Chlorocebus aethiops , Escherichia coli , Escherichia coli Infections/diagnosis , Foodborne Diseases , Humans , Reproducibility of Results , Sensitivity and Specificity , Shiga Toxins/analysis , Shiga Toxins/genetics , Shiga-Toxigenic Escherichia coli/genetics , Vero Cells
12.
Antimicrob Agents Chemother ; 58(11): 6886-95, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25199783

ABSTRACT

To identify possible explanations for the recent global emergence of Escherichia coli sequence type (ST) 131 (ST131), we analyzed temporal trends within ST131 O25 for antimicrobial resistance, virulence genes, biofilm formation, and the H30 and H30-Rx subclones. For this, we surveyed the WHO E. coli and Klebsiella Centre's E. coli collection (1957 to 2011) for ST131 isolates, characterized them extensively, and assessed them for temporal trends. Overall, antimicrobial resistance increased temporally in prevalence and extent, due mainly to the recent appearance of the H30 (1997) and H30-Rx (2005) ST131 subclones. In contrast, neither the total virulence gene content nor the prevalence of biofilm production increased temporally, although non-H30 isolates increasingly qualified as extraintestinal pathogenic E. coli (ExPEC). Whereas virotype D occurred from 1968 forward, virotypes A and C occurred only after 2000 and 2002, respectively, in association with the H30 and H30-Rx subclones, which were characterized by multidrug resistance (including extended-spectrum-beta-lactamase [ESBL] production: H30-Rx) and absence of biofilm production. Capsular antigen K100 occurred exclusively among H30-Rx isolates (55% prevalence). Pulsotypes corresponded broadly with subclones and virotypes. Thus, ST131 should be regarded not as a unitary entity but as a group of distinctive subclones, with its increasing antimicrobial resistance having a strong clonal basis, i.e., the emergence of the H30 and H30-Rx ST131 subclones, rather than representing acquisition of resistance by diverse ST131 strains. Distinctive characteristics of the H30-Rx subclone-including specific virulence genes (iutA, afa and dra, kpsII), the K100 capsule, multidrug resistance, and ESBL production-possibly contributed to epidemiologic success, and some (e.g., K100) might serve as vaccine targets.


Subject(s)
Antigens, Bacterial/genetics , Drug Resistance, Multiple, Bacterial/genetics , Escherichia coli , Polysaccharides, Bacterial/genetics , Virulence Factors/genetics , Biofilms , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli/pathogenicity , Escherichia coli Infections/drug therapy , Escherichia coli Infections/microbiology , Microbial Sensitivity Tests , Serogroup , Shiga Toxins/biosynthesis , beta-Lactamases/biosynthesis , beta-Lactamases/genetics
13.
PLoS One ; 9(6): e100596, 2014.
Article in English | MEDLINE | ID: mdl-24979038

ABSTRACT

Loop mediated isothermal amplification (LAMP) is a highly efficient, selective and rapid DNA amplification technique for genetic screening of pathogens. However, despite its popularity, there is yet no mathematical model to quantify the outcome and no well-defined metric for comparing results that are available. LAMP is intrinsically complex and involves multiple pathways for gene replication, making fundamental modelling nearly intractable. To circumvent this difficulty, an alternate, empirical model is introduced that will allow one to extract a set of parameters from the concentration versus time curves. A simple recipe to deduce the time to positive, Tp--a parameter analogous to the threshold cycling time in polymerase chain reaction (PCR), is also provided. These parameters can be regarded as objective and unambiguous indicators of LAMP amplification. The model is exemplified on Escherichia coli strains by using the two gene fragments responsible for vero-toxin (VT) production and tested against VT-producing (O157 and O45) and non-VT producing (DH5 alpha) strains. Selective amplification of appropriate target sequences was made using well established LAMP primers and protocols, and the concentrations of the amplicons were measured using a Qubit 2.0 fluorometer at specific intervals of time. The data is fitted to a generalized logistic function. Apart from providing precise screening indicators, representing the data with a small set of numbers offers significant advantages. It facilitates comparisons of LAMP reactions independently of the sampling technique. It also eliminates subjectivity in interpretation, simplifies data analysis, and allows easy data archival, retrieval and statistical analysis for large sample populations. To our knowledge this work represents a first attempt to quantitatively model LAMP and offer a standard method that could pave the way towards high throughput automated screening.


Subject(s)
DNA, Bacterial/genetics , Escherichia coli O157/genetics , Escherichia coli/genetics , Models, Statistical , Nucleic Acid Amplification Techniques/methods , Shiga Toxins/genetics , Calibration , DNA Primers/chemistry , Escherichia coli/metabolism , Escherichia coli O157/metabolism , Nucleic Acid Amplification Techniques/instrumentation , Reproducibility of Results , Sensitivity and Specificity , Shiga Toxins/biosynthesis
14.
Can J Microbiol ; 60(6): 355-61, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24848979

ABSTRACT

To investigate the effect of the luxS gene on the expression of virulence factors in Shiga-like toxin producing and verotoxin-producing Escherichia coli, the luxS gene from E. coli 107/86 (wild type, O139:H1:F18ab, Stx2e) was deleted. The successful deletion of luxS was confirmed by bioluminescence assays. The luxS deletion mutant exhibited changed flagella-related phenotypes, like impaired expression of flagella, decreased flagella motility, reduced biofilm formation, and reduced ability to induce pro-immunity response in host cells, which were restored after complementation with the intact luxS gene. The mutant strain also displayed attenuated production of Stx2e. This study provides new information to the crucial function of luxS in regulating Shiga-like toxin producing E. coli virulence.


Subject(s)
Bacterial Proteins/genetics , Carbon-Sulfur Lyases/genetics , Flagella/physiology , Quorum Sensing/genetics , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/genetics , Animals , Bacterial Proteins/physiology , Carbon-Sulfur Lyases/physiology , Chlorocebus aethiops , Flagella/genetics , Gene Deletion , Gene Expression Regulation, Bacterial , Luminescent Measurements , Shiga Toxins/genetics , Shiga-Toxigenic Escherichia coli/metabolism , Shiga-Toxigenic Escherichia coli/pathogenicity , Vero Cells , Virulence/genetics , Virulence Factors/genetics , Virulence Factors/metabolism
15.
PLoS One ; 9(3): e92723, 2014.
Article in English | MEDLINE | ID: mdl-24658463

ABSTRACT

The emergence of antibiotic resistant microorganisms is a great public health concern and has triggered an urgent need to develop alternative antibiotics. Chitosan microparticles (CM), derived from chitosan, have been shown to reduce E. coli O157:H7 shedding in a cattle model, indicating potential use as an alternative antimicrobial agent. However, the underlying mechanism of CM on reducing the shedding of this pathogen remains unclear. To understand the mode of action, we studied molecular mechanisms of antimicrobial activity of CM using in vitro and in vivo methods. We report that CM are an effective bactericidal agent with capability to disrupt cell membranes. Binding assays and genetic studies with an ompA mutant strain demonstrated that outer membrane protein OmpA of E. coli O157:H7 is critical for CM binding, and this binding activity is coupled with a bactericidal effect of CM. This activity was also demonstrated in an animal model using cows with uterine diseases. CM treatment effectively reduced shedding of intrauterine pathogenic E. coli (IUPEC) in the uterus compared to antibiotic treatment. Since Shiga-toxins encoded in the genome of bacteriophage is often overexpressed during antibiotic treatment, antibiotic therapy is generally not recommended because of high risk of hemolytic uremic syndrome. However, CM treatment did not induce bacteriophage or Shiga-toxins in E. coli O157:H7; suggesting that CM can be a potential candidate to treat infections caused by this pathogen. This work establishes an underlying mechanism whereby CM exert antimicrobial activity in vitro and in vivo, providing significant insight for the treatment of diseases caused by a broad spectrum of pathogens including antibiotic resistant microorganisms.


Subject(s)
Anti-Infective Agents/administration & dosage , Bacteria/drug effects , Chitosan/administration & dosage , Nanoparticles , Animals , Anti-Infective Agents/chemistry , Anti-Infective Agents/metabolism , Bacteria/genetics , Bacteria/metabolism , Bacterial Infections/drug therapy , Bacterial Infections/microbiology , Bacterial Outer Membrane Proteins/genetics , Bacterial Outer Membrane Proteins/metabolism , Bacteriophages/drug effects , Cattle , Chitosan/chemistry , Chitosan/metabolism , Escherichia coli O157/drug effects , Lipopolysaccharides/metabolism , Microbial Sensitivity Tests , Nanoparticles/chemistry , Shiga Toxins/biosynthesis
16.
Appl Environ Microbiol ; 80(9): 2715-27, 2014 May.
Article in English | MEDLINE | ID: mdl-24561587

ABSTRACT

A model to predict the population density of verotoxigenic Escherichia coli (VTEC) throughout the elaboration and storage of fermented raw-meat sausages (FRMS) was developed. Probabilistic and kinetic measurement data sets collected from publicly available resources were completed with new measurements when required and used to quantify the dependence of VTEC growth and inactivation on the temperature, pH, water activity (aw), and concentration of lactic acid. Predictions were compared with observations in VTEC-contaminated FRMS manufactured in a pilot plant. Slight differences in the reduction of VTEC were predicted according to the fermentation temperature, 24 or 34°C, with greater inactivation at the highest temperature. The greatest reduction was observed during storage at high temperatures. A population decrease greater than 6 decimal logarithmic units was observed after 66 days of storage at 25°C, while a reduction of only ca. 1 logarithmic unit was detected at 12°C. The performance of our model and other modeling approaches was evaluated throughout the processing of dry and semidry FRMS. The greatest inactivation of VTEC was predicted in dry FRMS with long drying periods, while the smallest reduction was predicted in semidry FMRS with short drying periods. The model is implemented in a computing tool, E. coli SafeFerment (EcSF), freely available from http://www.ifr.ac.uk/safety/EcoliSafeFerment. EcSF integrates growth, probability of growth, and thermal and nonthermal inactivation models to predict the VTEC concentration throughout FRMS manufacturing and storage under constant or fluctuating environmental conditions.


Subject(s)
Food Contamination/analysis , Meat Products/microbiology , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/isolation & purification , Shiga-Toxigenic Escherichia coli/metabolism , Animals , Fermentation , Food Handling , Food Storage , Shiga-Toxigenic Escherichia coli/genetics , Shiga-Toxigenic Escherichia coli/growth & development , Swine
17.
ScientificWorldJournal ; 2013: 607258, 2013.
Article in English | MEDLINE | ID: mdl-24324376

ABSTRACT

The present study was designed to determine the relationships among biofilm formation, cellular stress and release of Shiga toxin (Stx) by three different clinical Shiga toxin-producing Escherichia coli (STEC) strains. The biofilm formation was determined using crystal violet stain in tryptic soy broth or thioglycollate medium with the addition of sugars (glucose or mannose) or hydrogen peroxide. The reactive oxygen species (ROSs) were detected by the reduction of nitro blue tetrazolium and reactive nitrogen intermediates (RNI) determined by the Griess assay. In addition, the activities of two antioxidant enzymes, superoxide dismutase (SOD) and catalase (CAT), were studied. For the cytotoxicity studies, Vero cells were cultured with Stx released of STEC biofilms. The addition of sugars in both culture mediums resulted in an increase in biofilm biomass, with a decrease in ROS and RNI production, low levels of SOD and CAT activity, and minimal cytotoxic effects. However, under stressful conditions, an important increase in the antioxidant enzyme activity and high level of Stx production were observed. The disturbance in the prooxidant-antioxidant balance and its effect on the production and release of Stx evaluated under different conditions of biofilm formation may contribute to a better understanding of the relevance of biofilms in the pathogenesis of STEC infection.


Subject(s)
Biofilms/growth & development , Escherichia coli Infections/etiology , Shiga-Toxigenic Escherichia coli/physiology , Shiga-Toxigenic Escherichia coli/pathogenicity , Animals , Catalase/metabolism , Chlorocebus aethiops , Culture Media , Escherichia coli Infections/metabolism , Escherichia coli Infections/microbiology , Escherichia coli O157/pathogenicity , Escherichia coli O157/physiology , Humans , Reactive Nitrogen Species/metabolism , Reactive Oxygen Species/metabolism , Shiga Toxins/biosynthesis , Shiga Toxins/toxicity , Superoxide Dismutase/metabolism , Vero Cells
18.
Nihon Saikingaku Zasshi ; 68(3): 299-311, 2013.
Article in Japanese | MEDLINE | ID: mdl-23985936

ABSTRACT

Bacterial AB5 toxins are proteins, produced by pathogenic bacteria including of Vibrio cholerae, Shigella dysenteriae, and enterohaemorrhagic Escherichia coli, which are usually released into the extracellular medium and cause disease by killing or altering the metabolism of target eukaryotic cells. The toxins are usually composed of one A subunit (a toxic domain) and five B subunits (a receptor-binding domain). This article overviews the characteristics and mode of actions of AB5 toxins including cholera toxin, Shiga-like toxin, and subtilase cytotoxin, and highlights current topics related to the roles of the effectors in promoting bacterial infection.


Subject(s)
Cholera Toxin/toxicity , Enterohemorrhagic Escherichia coli/metabolism , Escherichia coli Proteins/toxicity , Shiga Toxins/toxicity , Subtilisins/toxicity , Vibrio cholerae/metabolism , Animals , Apoptosis/drug effects , Cell Cycle/drug effects , Cholera Toxin/antagonists & inhibitors , Cholera Toxin/biosynthesis , Cholera Toxin/chemistry , Disease Outbreaks , Endoplasmic Reticulum Stress/drug effects , Enterohemorrhagic Escherichia coli/pathogenicity , Escherichia coli Proteins/antagonists & inhibitors , Escherichia coli Proteins/biosynthesis , Escherichia coli Proteins/chemistry , Foodborne Diseases/epidemiology , Foodborne Diseases/microbiology , Humans , Macrophages/immunology , Phagocytosis/drug effects , Protein Structure, Tertiary , Shiga Toxins/antagonists & inhibitors , Shiga Toxins/biosynthesis , Shiga Toxins/chemistry , Subtilisins/antagonists & inhibitors , Subtilisins/biosynthesis , Subtilisins/chemistry , Vaccines, Attenuated , Vibrio cholerae/pathogenicity
19.
J Food Prot ; 75(11): 2028-30, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23127712

ABSTRACT

The ability to detect and isolate Shiga toxin-producing Escherichia coli (STEC) remains a major challenge for food microbiologists. Although methods based on nucleic acids and antibodies have improved detection of STECs in foods, isolation of these bacteria remains arduous. STEC isolation is necessary for matching food, environmental, and clinical isolates during outbreak investigations and for distinguishing between pathogenic and nonpathogenic organisms. STEC heart infusion washed blood agar with mitomycin-C (SHIBAM) is a modification of washed sheep blood agar prepared by adding mitomycin-C and optimizing both the washed blood and base agar to better isolate STECs. Most STEC isolates produce a zone of hemolysis on SHIBAM plates and are easily distinguishable from background microbiota. Here, we present data supporting the use of SHIBAM to isolate STECs from fresh produce. SHIBAM was tested for accuracy in identifying STECs (365 of 410 STEC strains were hemolytic, and 63 of 73 E. coli strains that did not produce Shiga toxin were not hemolytic) and for recovery from artificially inoculated fresh produce (11 of 24 romaine lettuce samples and 6 of 24 tomato samples). STEC recovery with SHIBAM agar was greatly improved when compared with recovery on Levine's eosin-methylene blue agar as a reference method.


Subject(s)
Colony Count, Microbial/methods , Food Contamination/analysis , Shiga-Toxigenic Escherichia coli/isolation & purification , Vegetables/microbiology , Agar , Blood , Culture Media , Humans , Mitomycin/pharmacology , Sensitivity and Specificity , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/metabolism
20.
Jpn J Infect Dis ; 65(5): 442-3, 2012.
Article in English | MEDLINE | ID: mdl-22996222

ABSTRACT

Fifteen Japanese colitis patients, aged above 16 years old, infected with verotoxin-producing Escherichia coli O157 (VTEC O157) were divided into 2 treatment groups. Of the 15 patients, 6 (mean ± SD, 41.3 ± 19.0 years old) were treated with levofloxacin (LVFX), while the remaining 9 patients (32.0 ± 10.0 years old) were not treated with any antimicrobial agents. All patients complained of abdominal pain and bloody stool and were not administered antidiarrheals. Hemolytic uremic syndrome (HUS) did not develop in any of the 6 patients treated with LVFX, but developed in 1 of the 9 patients not treated with antimicrobial agents. No statistical difference was found in the occurrence rate of HUS between LVFX-treated patients and patients not treated with antimicrobial agents. Our results suggest that oral administration of LVFX is not associated with risk of HUS in hemorrhagic colitis patients aged above 16 years infected with VTEC O157.


Subject(s)
Anti-Bacterial Agents/adverse effects , Escherichia coli Infections/complications , Escherichia coli O157/isolation & purification , Hemolytic-Uremic Syndrome/etiology , Levofloxacin , Ofloxacin/adverse effects , Shiga Toxins/biosynthesis , Administration, Oral , Adult , Anti-Bacterial Agents/administration & dosage , Colitis/drug therapy , Colitis/microbiology , Escherichia coli Infections/drug therapy , Escherichia coli O157/metabolism , Female , Hemolytic-Uremic Syndrome/chemically induced , Hemolytic-Uremic Syndrome/microbiology , Humans , Japan , Male , Middle Aged , Ofloxacin/administration & dosage , Retrospective Studies , Risk Factors
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