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1.
PLoS One ; 10(3): e0120508, 2015.
Article in English | MEDLINE | ID: mdl-25785714

ABSTRACT

White nose syndrome (WNS) is a cutaneous fungal disease of bats. WNS is responsible for unprecedented mortalities in North American cave bat populations. There have been few descriptions of enzyme activities that may function in WNS host/pathogen interactions, while no study has isolated and described secreted proteases. To address the hypothesis that Pseudogymnoascus destructans secretes extracellular proteases that function in wing necrosis during WNS infection, the object of this study was to culture P. destructans on various media, then isolate and structurally identify those proteases accumulated stably in the culture medium. We found a single dominant protease activity on minimal nutrient broth enriched with protein substrates, which was strongly inhibited by phenylmethylsulfonyl fluoride. This P. destructans serine protease (PdSP1) was isolated by preparative isoelectric focusing and concanavalin A lectin affinity chromatography. PdSP1 showed a molecular weight 27,900 (estimated by SDS-PAGE), broad pH optimum 6-8, and temperature optimum 60°C. Structural characterization of PdSP1 by MALDI-TOF MS, Orbitrap MS/MS, and Edman amino-terminal peptide sequencing matched it directly to a hypothetical protein accession from the sequenced P. destructans genome that is further identified as a MEROPS family S8A subtilisin-like serine peptidase. Two additional isoforms, PdSP2 and PdSP3, were identified in the P. destructans genome with 90% and 53% homology, respectively. P. destructans S8A serine proteases showed closer sequence conservation to P. pannorum and plant pathogenic fungi than to human pathogenic dermatophytes. Peptide-specific polyclonal antibodies developed from the PdSP1 sequence detected the protein in western blots. These subtilisin-like serine proteases are candidates for further functional studies in WNS host-pathogen interaction.


Subject(s)
Ascomycota/cytology , Ascomycota/physiology , Chiroptera/microbiology , Extracellular Space/enzymology , Subtilisin/isolation & purification , Subtilisin/metabolism , Amino Acid Sequence , Animals , Ascomycota/enzymology , Enzyme Stability , Humans , Molecular Sequence Data , Protein Biosynthesis , Sequence Analysis , Subtilisin/chemistry
2.
FEMS Microbiol Lett ; 362(3): 1-5, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25673656

ABSTRACT

Interspecies interactions were studied in hot spring microbial mats where diverse species of bacterial cells are densely packed. The anoxygenic photosynthetic bacterium, Chloroflexus aggregans, has been widely found in the microbial mats as a major component in terrestrial hot springs in Japan at the temperature from 50 to 70°C. C. aggregans shows cellular motility to form a microbial mat-like dense cell aggregate. The aggregating ability of C. aggregans was affected by another bacterial species, strain BL55a (related to Bacillus licheniformis) isolated from the microbial mats containing C. aggregans. Cell aggregation rate of C. aggregans was promoted by the addition of culture supernatants of strain BL55a. Similar effects were also detected from other bacterial isolates, specifically Geobacillus sp. and Aeribacillus sp. Protease activity was detected from the culture supernatants from all of these isolates. The promoting effect of strain BL55a was suppressed by a serine protease inhibitor, phenylmethylsulfonyl fluoride. A purified serine protease, subtilisin obtained from B. licheniformis, showed a promoting effect on the cell aggregation. These results suggest that an extracellular protease, secreted from co-existing bacterial species promoted the aggregating motility of C. aggregans. This is the first report that exogenous protease affects bacterial cellular motility.


Subject(s)
Bacillus/enzymology , Chloroflexus/physiology , Hot Springs/microbiology , Microbial Interactions , Peptide Hydrolases/metabolism , Bacillus/genetics , Bacillus/isolation & purification , Bacillus/physiology , Chloroflexus/genetics , Chloroflexus/isolation & purification , Geobacillus/genetics , Geobacillus/isolation & purification , Geobacillus/physiology , Japan , Peptide Hydrolases/isolation & purification , Phenylmethylsulfonyl Fluoride/pharmacology , Photosynthesis , Protease Inhibitors/pharmacology , RNA, Ribosomal, 16S , Sequence Analysis, DNA , Subtilisin/biosynthesis , Subtilisin/isolation & purification , Subtilisin/metabolism , Temperature , Water Microbiology
3.
Appl Microbiol Biotechnol ; 98(5): 2113-20, 2014 Mar.
Article in English | MEDLINE | ID: mdl-23880875

ABSTRACT

The abnormal prion protein (scrapie-associated prion protein, PrP(Sc)) is considered to be included in the group of infectious agents of transmissible spongiform encephalopathies. Since PrP(Sc) is highly resistant to normal sterilization procedures, the decontamination of PrP(Sc) is a significant public health issue. In the present study, a hyperthermostable protease, Tk-subtilisin, was used to degrade PrP(Sc). Although PrP(Sc) is known to be resistant toward proteolytic enzymes, Tk-subtilisin was able to degrade PrP(Sc) under extreme conditions. The level of PrP(Sc) in brain homogenates was found to decrease significantly in vitro following Tk-subtilisin treatment at 100 °C, whereas some protease-resistant fractions remain after proteinase K treatment. Rather small amounts of Tk-subtilisin (0.3 U) were required to degrade PrP(Sc) at 100 °C and pH 8.0. In addition, Tk-subtilisin was observed to degrade PrP(Sc) in the presence of sodium dodecyl sulfate or other industrial surfactants. Although several proteases degrading PrP(Sc) have been reported, practical decontamination procedures using enzymes are not available. This report aims to provide basic information for the practical use of a proteolytic enzyme for PrP(Sc) degradation.


Subject(s)
PrPSc Proteins/metabolism , Subtilisin/isolation & purification , Subtilisin/metabolism , Thermococcus/enzymology , Detergents/metabolism , Enzyme Inhibitors/metabolism , Enzyme Stability , Hot Temperature , Hydrogen-Ion Concentration , Proteolysis , Sodium Dodecyl Sulfate/metabolism , Subtilisin/chemistry
4.
Bioorg Khim ; 39(1): 46-54, 2013.
Article in Russian | MEDLINE | ID: mdl-23844506

ABSTRACT

Bacillus pumilus 3-19 glutamylendopeptidase has been isolated from culture liquid of Bacillus subtilis recombinant strain on different growth stages: growth retardation (early enzyme) and stationary phase (late enzyme). The effect of purified proteinase of different growth stages on insulin beta-chain, protein and oligopeptide substrates has been studied. Comparative study of physicochemical properties of early and late proteinases was carried out. Two protein fractions were different in catalytic characteristics and demonstrated different sensitivity to the presence of metal cations.


Subject(s)
Bacillus/enzymology , Serine Endopeptidases/isolation & purification , Subtilisin/isolation & purification , Amino Acid Sequence , Bacillus/genetics , Bacillus/growth & development , Catalysis , Cations/chemistry , Insulin/chemistry , Metals/chemistry , Molecular Sequence Data , Serine Endopeptidases/metabolism , Substrate Specificity , Subtilisin/genetics , Subtilisin/metabolism
5.
Int J Biol Macromol ; 51(5): 960-7, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22926101

ABSTRACT

The current work is a report on a new extremely thermostable protease from newly isolated hyperthermophilic Bacillus sp. MLA64. The protease was purified with a 16.5-fold increase in specific activity and 93.5% recovery. The molecular weight of the enzyme was estimated to be 24 kDa. The enzyme was extremely stable and quite active over the temperature range from 40 to 100°C with an optimal temperature at 95°C as well as in a wide range of pH from 6.0 to 12.5, with a superlative at pH 9.5. The enzyme activity was not enhanced in the presence of CaCl(2), indicating that the enzyme is calcium-independent. The enzyme showed high stability towards non-ionic surfactants and anionic surfactant SDS. In addition, the enzyme was relatively stable with respect to oxidizing agents. The protease was inhibited by PMSF but not by TPCK and TLCK, suggesting that it can be a subtilisin-like protease. Moreover, the N-terminal sequencing of the first 20 amino acids of the purified protease showed less homology with other well-known bacterial peptidases. In conclusion, the enzyme can be considered as a novel protease which might be a candidate for industrial processes.


Subject(s)
Bacillus/enzymology , Subtilisin/chemistry , Subtilisin/metabolism , Temperature , Bacillus/classification , Enzyme Stability , Hot Springs/chemistry , Hydrogen-Ion Concentration , Metals/pharmacology , Oxidants/pharmacology , Phylogeny , Protease Inhibitors/pharmacology , Sequence Analysis , Subtilisin/isolation & purification , Surface-Active Agents/pharmacology
6.
Protein Expr Purif ; 82(1): 55-60, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22133714

ABSTRACT

Desensitization of agonist-activated G protein-coupled receptors (GPCRs) requires phosphorylation followed by the binding of arrestin, a ~48 kDa soluble protein. While crystal structures for the inactive, 'basal' state of various arrestins are available, the conformation of 'activated' arrestin adopted upon interaction with activated GPCRs remains unknown. As a first step towards applying high-resolution structural methods to study arrestin conformation and dynamics, we have utilized the subtilisin prodomain/Profinity eXact™ fusion-tag system for the high-level bacterial expression and one-step purification of wild-type visual arrestin (arrestin 1) as well as a mutant form (R175E) of the protein that binds to non-phosphorylated, light-activated rhodopsin (Rho∗). The results show that both prodomain/Profinity eXact™ fusion-tagged wild-type and R175E arrestins can be expressed to levels approaching 2-3 mg/l in Luria-Bertani media, and that the processed, tag-free mature forms can be purified to near homogeneity using a Bio-Scale™ Mini Profinity eXact™ cartridge on the Profinia™ purification system. Functional analysis of R175E arrestin generated using this approach shows that it binds to non-phosphorylated rhodopsin in a light-dependent manner. These findings should facilitate the structure determination of this 'constitutively activated' state of arrestin 1 as well as the monitoring of conformational changes upon interaction with Rho∗.


Subject(s)
Arrestin/isolation & purification , Arrestin/metabolism , Animals , Arrestin/chemistry , Arrestin/genetics , Cattle , Cloning, Molecular , Escherichia coli/genetics , Gene Expression , Genetic Vectors , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Rhodopsin/metabolism , Subtilisin/chemistry , Subtilisin/genetics , Subtilisin/isolation & purification
7.
Mol Biotechnol ; 52(1): 1-7, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22069026

ABSTRACT

Several investigations are being pursued to enhance the efficacy and specificity of fibrinolytic therapy. In this regard, microbial fibrinolytic enzymes attracted much more medical interests during these decades. Subtilisin, a member of subtilases (the superfamily of subtilisin-like serine proteases) and also a fibrinolytic enzyme is quite common in Gram-positive bacteria, and Bacillus species stand out in particular, as many extracellular and even intracellular variants have been identified. In the present work, the subtilisin gene from Bacillus subtilis PTCC 1023 was cloned into the vector pET-15b and expressed in Escherichia coli strain BL21 (DE3). Total genomic DNA were isolated and used for PCR amplification of the subtilisin gene by means of the specific primers. SDS-PAGE and enzyme assay were done for characterizing the expressed protein. A ~1,100 bp of the structural subtilisin gene was amplified. The DNA and amino acid sequence alignments resulting from the BLAST search of subtilisin showed high sequence identity with the other strains of B. subtilis, whereas significantly lower identity was observed with other bacterial subtilisins. The recombinant enzyme had the same molecular weight as other reported subtilisins and the E. coli transformants showed high subtilisin activity. This study provides evidence that subtilisin can be actively expressed in E. coli. The commercial availability of subtilisin is of great importance for industrial applications and also pharmaceutical purposes as thrombolytic agent. Thus, the characterization of new recombinant subtilisin and the development of rapid, simple, and effective production methods are not only of academic interest, but also of practical importance.


Subject(s)
Bacillus subtilis/enzymology , Bacillus subtilis/genetics , Escherichia coli/metabolism , Fibrinolysis/genetics , Subtilisin/genetics , Biotechnology , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Humans , Polymerase Chain Reaction , Recombinant Proteins/isolation & purification , Reference Standards , Reproducibility of Results , Streptokinase/metabolism , Subtilisin/biosynthesis , Subtilisin/isolation & purification , Transformation, Genetic
8.
Appl Biochem Biotechnol ; 162(1): 75-88, 2010 Sep.
Article in English | MEDLINE | ID: mdl-19842068

ABSTRACT

In this study, Mirabilis jalapa tuber powder (MJTP) was used as a new complex organic substrate for the growth and production of fibrinolytic enzymes by a newly isolated Bacillus amyloliquefaciens An6. Maximum protease activity (1,057 U/ml) with casein as a substrate was obtained when the strain was grown in medium containing (grams per liter) MJTP 30, yeast extract 6, CaCl(2) 1, K(2)HPO(4) 0.1, and K(2)HPO(4) 0.1. The strain was also found to grow and produce extracellular proteases in a medium containing only MJTP, indicating that it can obtain its carbon, nitrogen, and salts requirements directly from MJTP. The B. amyloliquefaciens An6 fibrinase (BAF1) was partially purified, and fibrinolytic activity was assayed in a test tube with an artificial fibrin clot. The molecular weight of the partially purified BAF1 fibrinolytic protease was estimated to be 30 kDa by sodium dodecyl sulfate polyacrylamide gel electrophoresis and gel filtration. The optimum temperature and pH for the caseinolytic activity were 60 degrees C and 9.0, respectively. The enzyme was highly stable from pH 6.0 to 11.0 and retained 62% of its initial activity after 1 h incubation at 50 degrees C. However, the enzyme was inactivated at higher temperatures. The activity of the enzyme was totally lost in the presence of phenylmethylsulfonyl fluoride, suggesting that BAF1 is a serine protease.


Subject(s)
Bacillus/enzymology , Bacillus/growth & development , Fibrinolysis , Mirabilis/metabolism , Plant Tubers/metabolism , Serine Proteases/isolation & purification , Serine Proteases/metabolism , Animals , Cattle , Culture Media/metabolism , Enzyme Stability , Hydrogen-Ion Concentration , Powders , Serine Proteases/chemistry , Serine Proteinase Inhibitors/pharmacology , Subtilisin/isolation & purification , Subtilisin/metabolism , Temperature
9.
Appl Biochem Biotechnol ; 162(3): 900-11, 2010 Oct.
Article in English | MEDLINE | ID: mdl-19902383

ABSTRACT

An extracellular gelatinolytic enzyme obtained from the newly isolated Bacillus subtilis JB1, a thermophilic microorganism relevant to the aerobic biodegradation process of fish-meal production, was purified via ammonium sulfate precipitation, Sephadex G-200 Gel filtration chromatography, and one-dimensional gel electrophoresis separation and subsequently identified via peptide mass fingerprinting and chemically assisted fragmentation matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The subtilisin JB1 gene was sequenced and its recombinant protein prosubtilisin JB1 was expressed in Escherichia coli, and the purified prosubtilisin JB1 (62 kDa) protein was digested with gelatin, bovine serum albumin, azocasein, fibrinogen, and the fluorogenic peptide substrate Ala-Ala-Phe-7-amido-4-methylcoumarin hydrochloride, whereas the serine protease inhibitors phenylmethylsulfonyl fluoride and chymostatin completely inhibited its enzyme activity at an optimal pH of 7.5. Thus, our results show that subtilisin JB1 may serve as a potential source material for use in industrial applications of proteolytic enzymes and microorganisms for fishery waste degradation and fish by-product processing.


Subject(s)
Bacillus subtilis/metabolism , Subtilisin/isolation & purification , Subtilisin/metabolism , Bacillus subtilis/genetics , Blotting, Western , Chromatography, Gel , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Escherichia coli/genetics , Escherichia coli/metabolism , Hydrogen-Ion Concentration , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Subtilisin/genetics
10.
Eukaryot Cell ; 8(4): 470-7, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19168760

ABSTRACT

The apicomplexan parasite Cryptosporidium is a significant cause of diarrheal disease worldwide. Previously, we reported that a Cryptosporidium parvum subtilisin-like serine protease activity with furin-type specificity cleaves gp40/15, a glycoprotein that is proteolytically processed into gp40 and gp15, which are implicated in mediating infection of host cells. Neither the enzyme(s) responsible for the protease activity in C. parvum lysates nor those that process gp40/15 are known. There are no furin or other proprotein convertase genes in the C. parvum genome. However, a gene encoding CpSUB1, a subtilisin-like serine protease, is present. In this study, we cloned the CpSUB1 genomic sequence and expressed and purified the recombinant prodomain. Reverse transcriptase PCR analysis of RNA from C. parvum-infected HCT-8 cells revealed that CpSUB1 is expressed throughout infection in vitro. In immunoblots, antiserum to the recombinant CpSUB1 prodomain revealed two major bands, of approximately 64 kDa and approximately 48 kDa, for C. parvum lysates and proteins "shed" during excystation. In immunofluorescence assays, the antiserum reacted with the apical region of sporozoites and merozoites. The recombinant prodomain inhibited protease activity and processing of recombinant gp40/15 by C. parvum lysates but not by furin. Since prodomains are often selective inhibitors of their cognate enzymes, these results suggest that CpSUB1 may be a likely candidate for the protease activity in C. parvum and for processing of gp40/15. Importantly, the recombinant prodomain inhibited C. parvum infection of HCT-8 cells. These studies indicate that CpSUB1 plays a significant role in infection of host cells by the parasite and suggest that this enzyme may serve as a target for intervention.


Subject(s)
Cryptosporidiosis/parasitology , Cryptosporidium parvum/physiology , Host-Parasite Interactions , Protozoan Proteins/metabolism , Subtilisin/metabolism , Animals , Cell Line, Tumor , Cryptosporidium parvum/enzymology , Cryptosporidium parvum/genetics , Cryptosporidium parvum/growth & development , Humans , Molecular Weight , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Subtilisin/chemistry , Subtilisin/genetics , Subtilisin/isolation & purification
11.
Microbiology (Reading) ; 153(Pt 12): 4208-4218, 2007 Dec.
Article in English | MEDLINE | ID: mdl-18048934

ABSTRACT

Finegoldia magna is an anaerobic Gram-positive bacterium and commensal, which is also associated with clinically important conditions such as skin and soft tissue infections. This study describes a novel subtilisin-like extracellular serine proteinase of F. magna, denoted SufA (subtilase of Finegoldia magna), which is believed to be the first subtilase described among Gram-positive anaerobic cocci. SufA is associated with the bacterial cell surface, but is also released in substantial amounts during bacterial growth. Papain was used to release SufA from the surface of F. magna and the enzyme was purified by ion-exchange chromatography and gel filtration. A protein band on SDS-PAGE corresponding to the dominating proteolytic activity on gelatin zymography was analysed by MS/MS. Based on the peptide sequences obtained, the sufA gene was sequenced. The gene comprises 3466 bp corresponding to a preprotein of 127 kDa. Like other members of the subtilase family, SufA contains the catalytic triad of aspartic acid, histidine and serine with surrounding conserved residues. A SufA homologue was identified in 33 of 34 investigated isolates of F. magna, as revealed by PCR and immunoprinting. The enzyme forms dimers, which are more proteolytically active than the monomeric protein. SufA was found to efficiently cleave and inactivate the antibacterial peptide LL-37 and the CXC chemokine MIG/CXCL9, indicating that the enzyme promotes F. magna survival and colonization.


Subject(s)
Gram-Positive Cocci/enzymology , Subtilisin , Amino Acid Sequence , Anaerobiosis , Antimicrobial Cationic Peptides/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Chemokine CXCL9/metabolism , Cloning, Molecular , Gram-Positive Cocci/genetics , Gram-Positive Cocci/growth & development , Humans , Molecular Sequence Data , Peptides/chemistry , Sequence Analysis, DNA , Serine Endopeptidases/chemistry , Serine Endopeptidases/genetics , Serine Endopeptidases/isolation & purification , Serine Endopeptidases/metabolism , Subtilisin/chemistry , Subtilisin/genetics , Subtilisin/isolation & purification , Subtilisin/metabolism , Cathelicidins
12.
Appl Microbiol Biotechnol ; 77(2): 311-9, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17786425

ABSTRACT

The acpI gene encoding an alkaline protease (AcpI) from a deep-sea bacterium, Alkalimonas collagenimarina AC40(T), was shotgun-cloned and sequenced. It had a 1,617-bp open reading frame encoding a protein of 538 amino acids. Based on analysis of the deduced amino acid sequence, AcpI is a subtilisin-like serine protease belonging to subtilase family A. It consists of a prepropeptide, a catalytic domain, and a prepeptidase C-terminal domain like other serine proteases from the genera Pseudomonas, Shewanella, Alteromonas, and Xanthomonas. Heterologous expression of the acpI gene in Escherichia coli cells yielded a 28-kDa recombinant AcpI (rAcpI), suggesting that both the prepropeptide and prepeptidase C-terminal domains were cleaved off to give the mature form. Analysis of N-terminal and C-terminal amino acid sequences of purified rAcpI showed that the mature enzyme would be composed of 273 amino acids. The optimal pH and temperature for the caseinolytic activity of the purified rAcpI were 9.0-9.5 and 45 degrees C in 100 mM glycine-NaOH buffer. Calcium ions slightly enhanced the enzyme activity and stability. The enzyme favorably hydrolyzed gelatin, collagen, and casein. AcpI from A. collagenimarina AC40(T) was also purified from culture broth, and its molecular mass was around 28 kDa, indicating that the cleavage manner of the enzyme is similar to that in E. coli cells.


Subject(s)
Gammaproteobacteria/enzymology , Seawater/microbiology , Serine Endopeptidases , Subtilisin , Amino Acid Sequence , Base Sequence , Biotechnology , Cloning, Molecular , Collagen/metabolism , Culture Media , Escherichia coli/enzymology , Escherichia coli/genetics , Gammaproteobacteria/genetics , Gammaproteobacteria/isolation & purification , Molecular Sequence Data , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Analysis, DNA , Serine Endopeptidases/chemistry , Serine Endopeptidases/genetics , Serine Endopeptidases/isolation & purification , Serine Endopeptidases/metabolism , Substrate Specificity , Subtilisin/chemistry , Subtilisin/genetics , Subtilisin/isolation & purification , Subtilisin/metabolism
13.
Biochemistry (Mosc) ; 72(2): 192-8, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17367297

ABSTRACT

Two subtilisin-like serine proteinases of Bacillus intermedius secreted by the Bacillus subtilis recombinant strain AJ73 (pCS9) on the 28th and 48th h of culture growth (early and late proteinase, respectively) have been isolated by ion-exchange chromatography on CM-cellulose and by FPLC. Molecular weights of both proteinases were determined. The N-terminal sequences of the recombinant protein and mature proteinases of the original strain were compared. Kinetic parameters and substrate specificities of the early and late proteinase were analyzed. Physicochemical properties of the enzymes were studied.


Subject(s)
Bacillus subtilis/enzymology , Bacillus/enzymology , Recombinant Proteins , Serine Endopeptidases , Subtilisin , Amino Acid Sequence , Bacillus/genetics , Bacillus/growth & development , Bacillus subtilis/genetics , Bacillus subtilis/growth & development , Chromatography, Ion Exchange , Hydrogen-Ion Concentration , Molecular Sequence Data , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Serine Endopeptidases/chemistry , Serine Endopeptidases/genetics , Serine Endopeptidases/isolation & purification , Serine Endopeptidases/metabolism , Substrate Specificity , Subtilisin/chemistry , Subtilisin/genetics , Subtilisin/isolation & purification , Subtilisin/metabolism , Temperature
14.
Int J Food Microbiol ; 113(2): 208-18, 2007 Jan 25.
Article in English | MEDLINE | ID: mdl-17020788

ABSTRACT

Selected Bacillus and Enterococcus strains, isolated from traditional okpehe fermentations, were studied for their suitability as starter cultures in laboratory-scale fermentations of Prosopis africana seeds for the production of okpehe, a traditional fermented vegetable product of Nigeria. The strains were selected on the basis of highest proteolytic activity, as determined with the APIZYM (BioMerieux) test. The choice of starter strains was narrowed to Bacillus subtilis strains BFE 5301 and BFE 5372. These were determined as the best starter combination because of rapid growth, high amylolytic and proteolytic activities, high levels of polyglutamic acid production by strain BFE 5372, as well as bacteriocin production by strain BFE 5301. Other mixed culture fermentations did not yield sensorically acceptable products. Although a monoculture fermentation, using only B. subtilis strain BFE 5372, produced okpehe with very good sensory characteristics, the growth of B. cereus could be detected after 48 h fermentation, indicating that this starter did not sufficiently contribute to product safety. Mixed culture fermentation with the combination of bacteriocin-producing starter B. subtilis BFE 5301 and the non-bacteriocin-producing B. subtilis BFE 5372, produced a product with good sensory characteristics, in which growth of B. cereus was delayed. The bacteriocin produced by B. subtilis strain BFE 5301 was identified as subtilisin, using subtilisin-specific primers and PCR amplification of the subtilisin gene. The bacteriocin was heat-stable at 100 degrees C for 10 min and exhibited highest activity at pH values lower or equal to pH 6.0. The bacteriocin was sensitive to the proteolytic enzymes trypsin and alpha-chymotrypsin at concentrations of 10 mg/ml.


Subject(s)
Bacillus subtilis/isolation & purification , Bacillus subtilis/metabolism , Food Microbiology , Subtilisin/biosynthesis , Vegetables/microbiology , Enterococcus/metabolism , Fermentation , Food Handling/methods , Hot Temperature , Hydrogen-Ion Concentration , Nigeria , Polymerase Chain Reaction , Subtilisin/isolation & purification , Time Factors
15.
Biotechnol Bioeng ; 96(6): 1030-9, 2007 Apr 15.
Article in English | MEDLINE | ID: mdl-17171716

ABSTRACT

A protein solubilization method has been developed to directly solubilize protein clusters into organic solvents containing small quantities of surfactant and trace amounts of water. Termed "direct solubilization," this technique was shown to solubilize three distinct proteins - subtilisin Carlsberg, lipase B from Candida antarctica, and soybean peroxidase - with much greater efficiencies than extraction of the protein from aqueous solution into surfactant-containing organic solvents (referred to as extraction). More significant, however, was the dramatic increase in directly solubilized enzyme activity relative to extracted enzyme activity, particularly for subtilisin and lipase in polar organic solvents. For example, in THF the initial rate towards bergenin transesterification was ca. 70 times higher for directly solubilized subtilisin than for the extracted enzyme. Furthermore, unlike their extracted counterparts, the directly solubilized enzymes yielded high product conversions across a spectrum of non-polar and polar solvents. Structural characterization of the solubilized enzymes via light scattering and atomic force microscopy revealed soluble proteins consisting of active enzyme aggregates containing approximately 60 and 100 protein molecules, respectively, for subtilisin and lipase. Formation of such clusters appears to provide a microenvironment conducive to catalysis and, in polar organic solvents at least, may protect the enzyme from solvent-induced inactivation.


Subject(s)
Chemical Fractionation/methods , Enzymes/isolation & purification , Catalysis , Enzymes/chemistry , Fungal Proteins , Lipase/isolation & purification , Peroxidase/isolation & purification , Solubility , Solvents/chemistry , Glycine max/enzymology , Subtilisin/isolation & purification
16.
Med Mycol ; 44(8): 723-31, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17127629

ABSTRACT

An endoprotease Arp (alkaline Rhizopus protease) was identified and purified to virtual homogeneity from the culture supernatant of an isolate of Rhizopus microsporus var. rhizopodiformis recovered from a non-fatal case of rhinoorbital mucormycosis. N-terminal sequencing of the mature native enzyme was obtained for the first 20 amino acids and revealed high homology to serine proteases of the subtilisin subfamily. Arp migrated in SDS-PAGE with an estimated molecular mass of 33 kDa and had a pI determined to be at pH 8.8. Arp is proteolytically active against various substrates, including elastin, over a broad pH range between 6 and 12 with an optimum at pH 10.5. After invasive mucormycosis, specific antibodies against Arp were detected in stored serum samples taken from the patient from whom the R. microsporus strain of this study had been isolated. Furthermore, in search of factors involved in thrombosis as a typical complication of mucormycosis, a procoagulatory effect of the enzyme has recently been shown. Altogether, these data substantiate the expression of Arp during human rhinoorbital mucormycosis and suggest a role of the enzyme in pathogenesis.


Subject(s)
Mucormycosis/microbiology , Rhizopus/enzymology , Subtilisin/metabolism , Virulence Factors/metabolism , Amino Acid Sequence , Antibodies, Fungal/blood , Elastin/metabolism , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Gene Expression , Humans , Hydrogen-Ion Concentration , Isoelectric Point , Molecular Sequence Data , Molecular Weight , Sequence Homology, Amino Acid , Subtilisin/biosynthesis , Subtilisin/chemistry , Subtilisin/isolation & purification , Virulence Factors/biosynthesis , Virulence Factors/chemistry , Virulence Factors/isolation & purification
17.
Mikrobiologiia ; 75(2): 172-8, 2006.
Article in Russian | MEDLINE | ID: mdl-16758864

ABSTRACT

The effect of the components of the nutrient medium on growth and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant strain Bacillus subtilis AJ73(pCS9) was studied. The production of proteinase was found to be dependent on the composition of the nutrient medium and showed two peaks, at the 28th and 48th h of growth. The concentrations of the main components of the nutrient medium (peptone and inorganic phosphate) optimal for the biosynthesis of subtilisin-like serine proteinase at the 28th and 48th h of growth were determined in factorial experiments. Complex organic substances, casein at concentrations of 0.5-1%, gelatin at concentrations of 0.5-1%, and yeast extract at a concentration of 0.5%, stimulated the production of subtilisin-like serine proteinase by the recombinant strain. The study of the sporulation dynamics in this strain showed that the proteinase peaks at the 28th and 48th h of growth correspond, respectively, to the initial stage of sporulation and to the terminal stages of endospore formation (V-VII stages of sporulation).


Subject(s)
Bacillus subtilis/growth & development , Bacillus/enzymology , Recombinant Proteins/biosynthesis , Serine Endopeptidases/biosynthesis , Subtilisin/biosynthesis , Bacillus/genetics , Bacillus subtilis/genetics , Bacillus subtilis/physiology , Culture Media/chemistry , Culture Media/metabolism , Serine Endopeptidases/isolation & purification , Spores, Bacterial/enzymology , Spores, Bacterial/growth & development , Subtilisin/isolation & purification
18.
Mikrobiologiia ; 75(2): 179-85, 2006.
Article in Russian | MEDLINE | ID: mdl-16758865

ABSTRACT

The effect of certain nutrients on the growth and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant strain Bacillus subtilis AJ73(pCS9) was studied. Glucose was found to inhibit the synthesis of proteinase in the early (28 h of growth) but not in the late stationary phase (48 h of growth). The inhibitory effect of the other mono- and disaccharides studied was less pronounced. Casamino acids added to the medium at concentrations of 0.1-1% as an additional carbon and nitrogen source stimulated enzyme biosynthesis. Individual amino acids (cysteine, asparagine, glutamine, tryptophan, histidine, and glutamate) also stimulated enzyme biosynthesis in the early stationary phase by 25-30%, whereas other amino acids (valine, leucine, alanine, and aspartate) were ineffective or even slightly inhibitory to enzyme production. The stimulatory effect of the first group of amino acids on the synthesis of proteinase in the late stationary phase was negligible. In contrast, the bivalent ions Ca2+, Mg2+, and Mn2+ stimulated biosynthesis of proteinase in the late stationary phase (by 20-60%) and not in the early stationary phase. The data indicate that there are differences in the biosyntheses of proteinase by the recombinant B. subtilis strain during the early and late periods of the stationary phases.


Subject(s)
Bacillus subtilis/growth & development , Bacillus/enzymology , Recombinant Proteins/biosynthesis , Serine Endopeptidases/biosynthesis , Subtilisin/biosynthesis , Amino Acids/pharmacology , Bacillus/genetics , Bacillus subtilis/genetics , Calcium/pharmacology , Cations, Divalent/pharmacology , Culture Media/chemistry , Glucose/pharmacology , Magnesium/pharmacology , Manganese/pharmacology , Serine Endopeptidases/isolation & purification , Subtilisin/isolation & purification
19.
Lett Appl Microbiol ; 42(3): 242-7, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16478511

ABSTRACT

AIMS: The present study was conducted by screening zein-degrading bacteria in an attempt to obtain zein-degrading protease. METHODS AND RESULTS: Soil bacteria were screened by formation of a clear zone on zein plates. Characterization of a zein-degrading bacterium indicated a taxonomic affiliation to Bacillus pumilus, and was named MS-1 strain. The strain produced two different types of extracellular proteases, BPP-A and BPP-B. In this study, we purified and characterized BPP-A because it exhibited a higher ability to hydrolyze zein than BPP-B. When casein was used as the substrate, the optimal pH for BPP-A was 11.0. In BPP-A, zein was better substrate than casein at pH 13.0, whereas casein was better one than zein at pH 11.0. The bppA gene encoded a 383-amino acid pre-pro form of BPP-A, and mature BPP-A contained 275 amino acid residues. It was concluded that BPP-A belonged to the subtilisin family. CONCLUSION: A zein-degrading bacterium assigned to B. pumilus produced two different types of extracellular proteases, BPP-A and BPP-B. BPP-A exhibited an ability to hydrolyze zein in an extreme alkaline condition. SIGNIFICANCE AND IMPACT OF THE STUDY: This is a first report on screening for zein-degrading micro-organisms. The subtilisin-like protease BPP-A is possible to utilize as an industrial enzyme for the production of zein hydrolysates.


Subject(s)
Bacillus/enzymology , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Endopeptidases/genetics , Endopeptidases/isolation & purification , Soil Microbiology , Subtilisin/genetics , Subtilisin/isolation & purification , Amino Acid Sequence , Bacillus/isolation & purification , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Biodegradation, Environmental , Endopeptidases/chemistry , Endopeptidases/metabolism , Genes, Bacterial , Hydrolysis , Japan , Molecular Sequence Data , Molecular Weight , Subtilisin/chemistry , Subtilisin/metabolism , Zein/metabolism
20.
FEMS Microbiol Lett ; 236(2): 325-31, 2004 Jul 15.
Article in English | MEDLINE | ID: mdl-15251215

ABSTRACT

Previously, we purified a strong fibrinolytic enzyme (subtilisin DJ-4) from Bacillus sp. DJ-4 and characterized its enzymatic activity. Here, we cloned the gene subtilisin DJ-4, and determines its nucleotide sequence, which showed 97% identity with subtilisin BPN' from B. amyloliquefacens. Recombinant full-subtilisin DJ-4 (rf-subDJ-4) and mature-subtilisin DJ-4 (rm-subDJ-4) were expressed using a pET29 vector system, and their fibrin (ogen)olytic and plasminogen activator activities were studied. rf-subDJ-4 was found to have a higher stability to heat (60 degrees C) and to acidic conditions (pH 3.0-4.0) than the native subtilisin DJ-4 of Bacillus sp. DJ-4. The plasminogen activator activity of rf-subDJ-4 was 2.75 times greater than that of plasmin on a molar basis. And its specific activity (F/C, the ratio of fibrinolytic activity to caseinolytic activity) was 2.67 and 3.97 times higher than those of subtilisin BPN' and subtilisin Carlsberg, respectively. rf-subDJ-4 rapidly hydrolyzed the Aalpha-, Bbeta-, and gamma-chains of fibrinogen within 5 min. But, unlike subtilisin BPN' at a very low concentration (50 ng), the gamma-chain was not cleaved. On the other hand, rm-subDJ-4 did not show enzyme activity.


Subject(s)
Bacillus/enzymology , Fibrin/metabolism , Fibrinogen/metabolism , Subtilisin/genetics , Subtilisin/metabolism , Amino Acid Sequence , Bacillus/genetics , Caseins/metabolism , Cloning, Molecular , DNA, Bacterial/chemistry , DNA, Bacterial/isolation & purification , Enzyme Stability , Escherichia coli/genetics , Escherichia coli/metabolism , Genes, Bacterial , Hydrogen-Ion Concentration , Molecular Sequence Data , Plasminogen/metabolism , Recombinant Proteins/isolation & purification , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Substrate Specificity , Subtilisin/chemistry , Subtilisin/isolation & purification , Temperature
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