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1.
Anal Chim Acta ; 1221: 340099, 2022 Aug 15.
Article in English | MEDLINE | ID: mdl-35934345

ABSTRACT

Monitoring the glycolysis pathway remains an analytical challenge as most metabolites involved are sugar phosphates. Structural similarity, instability, high polarity, and rich negative charges of sugar phosphates make LC-MS based analysis challenging. Here, we developed an improved workflow integrating uniformly 13C-labeled yeast metabolite extract, TiO2-based enrichment, differential stable isotope labeling phosphate methylation, porous graphic carbon column, and selected reaction monitoring acquisition. Uniformly 13C labeled yeast metabolite extract was used as internal standards while differential stable isotope labeled sugar phosphates worked as calibrants. The established method was validated in human plasma, platelet and cultured HeLa cells. The limits of quantification ranged between 0.25 and 0.54 pmol on column. The method was adapted and its applicability tested for human platelets in which activation with collagen-related peptide (CRP) clearly showed the upregulation of some SPx metabolites. The results document that this newly established method can be successfully used to monitor glycolysis in different biological samples. As an extension, more phosphorylated and carboxylated metabolites from the central carbon metabolism (pentose phosphate cycle, TCA cycle) were tested as well. This method showed superior performance, especially for multiple phosphorylated and carboxylated metabolites. For quantitative purpose, the concept of SPx in three sets (12C-analytes, U-13C-IS, deuterated calibrants) has the potential to be adapted for more anionic metabolites.


Subject(s)
Sugar Phosphates , Tandem Mass Spectrometry , Carbon , Chromatography, Liquid/methods , Glycolysis , HeLa Cells , Humans , Methylation , Phosphates , Saccharomyces cerevisiae , Sugar Phosphates/analysis , Tandem Mass Spectrometry/methods
2.
Anal Chem ; 94(11): 4866-4873, 2022 03 22.
Article in English | MEDLINE | ID: mdl-35274930

ABSTRACT

Sugar phosphates are important metabolic intermediates in organisms and play a vital role in energy and central carbon metabolism. Profiling of sugar phosphates is of great significance but full of challenges due to their high structural similarity and low sensitivities in liquid chromatography (LC)-mass spectrometry (MS). In this study, we developed a novel stable isotope chemical labeling combined with the reversed-phase (RP)LC-MS method for ultrasensitive determination of sugar phosphates at the single-cell level. By chemical derivatization with 2-(diazo-methyl)-N-methyl-N-phenyl-benzamide (2-DMBA) and d5-2-DMBA, sugar phosphate isomers can obtain better separation and identification, and the detection sensitivities of sugar phosphates increased by 3.5-147 folds. The obtained limits of detection of sugar phosphates ranged from 5 to 16 pg/mL. Using this method, we achieved ultrasensitive and accurate quantification of 12 sugar phosphates in different trace biological samples. Benefiting from the improved separation and detection sensitivity, we successfully quantified five sugar phosphates (d-glucose 1-phosphate, d-mannose 6-phosphate, d-fructose 6-phosphate, d-glucose 6-phosphate, and seduheptulose 7-phosphate) in a single protoplast of Arabidopsis thaliana.


Subject(s)
Sugar Phosphates , Chromatography, Liquid , Glucose , Isotope Labeling , Isotopes , Phosphates , Sugar Phosphates/analysis
3.
FEMS Yeast Res ; 21(1)2021 01 16.
Article in English | MEDLINE | ID: mdl-33232441

ABSTRACT

Co-consumption of D-xylose and D-glucose by Saccharomyces cerevisiae is essential for cost-efficient cellulosic bioethanol production. There is a need for improved sugar conversion rates to minimize fermentation times. Previously, we have employed evolutionary engineering to enhance D-xylose transport and metabolism in the presence of D-glucose in a xylose-fermenting S. cerevisiae strain devoid of hexokinases. Re-introduction of Hxk2 in the high performance xylose-consuming strains restored D-glucose utilization during D-xylose/D-glucose co-metabolism, but at rates lower than the non-evolved strain. In the absence of D-xylose, D-glucose consumption was similar to the parental strain. The evolved strains accumulated trehalose-6-phosphate during sugar co-metabolism, and showed an increased expression of trehalose pathway genes. Upon the deletion of TSL1, trehalose-6-phosphate levels were decreased and D-glucose consumption and growth on mixed sugars was improved. The data suggest that D-glucose/D-xylose co-consumption in high-performance D-xylose consuming strains causes the glycolytic flux to saturate. Excess D-glucose is phosphorylated enters the trehalose pathway resulting in glucose recycling and energy dissipation, accumulation of trehalose-6-phosphate which inhibits the hexokinase activity, and release of trehalose into the medium.


Subject(s)
Glucose/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Xylose/metabolism , Bioreactors , Culture Media/chemistry , Ethanol/metabolism , Evolution, Molecular , Fermentation , Metabolic Networks and Pathways/genetics , Sugar Phosphates/analysis , Sugar Phosphates/metabolism , Trehalose/analogs & derivatives , Trehalose/analysis , Trehalose/metabolism
4.
Neurochem Res ; 45(11): 2586-2606, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32949339

ABSTRACT

Metabolomic technologies including imaging mass spectrometry (IMS; also called mass spectrometry imaging, MSI, or matrix-assisted laser desorption/ionization-mass spectrometry imaging, MALDI MSI) are important methods to evaluate levels of many compounds in brain with high spatial resolution, characterize metabolic phenotypes of brain disorders, and identify disease biomarkers. ATP is central to brain energetics, and reports of its heterogeneous distribution in brain and regional differences in ATP/ADP ratios reported in IMS studies conflict with earlier studies. These discordant data were, therefore, analyzed and compared with biochemical literature that used rigorous methods to preserve labile metabolites. Unequal, very low regional ATP levels and low ATP/ADP ratios are explained by rapid metabolism during postmortem ischemia. A critical aspect of any analysis of brain components is their stability during and after tissue harvest so measured concentrations closely approximate their physiological levels in vivo. Unfortunately, the requirement for inactivation of brain enzymes by freezing or heating is not widely recognized outside the neurochemistry discipline, and procedures that do not prevent postmortem autolysis, including decapitation, brain removal/dissection, and 'snap freezing' are commonly used. Strong emphasis is placed on use of supplementary approaches to calibrate metabolite abundance in units of concentration in IMS studies and comparison of IMS results with biochemical data obtained by different methods to help identify potential artifacts.


Subject(s)
Brain/metabolism , Specimen Handling/methods , Adenosine Diphosphate/analysis , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/analysis , Adenosine Triphosphate/metabolism , Animals , Autolysis/metabolism , Metabolomics/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Sugar Phosphates/analysis , Sugar Phosphates/metabolism
5.
J Chromatogr A ; 1592: 82-90, 2019 May 10.
Article in English | MEDLINE | ID: mdl-30679043

ABSTRACT

Trehalose-6-phosphate (T6P) is an important signaling metabolite that is involved in many physiological processes. However, the mechanism of the biological functions of T6P is not fully understood. Quantification of T6P in plants will be beneficial to elucidate the mechanism. However, it is still a challenge to chromatographically separate and sensitively detect T6P and related sugar phosphates. In the current study, we developed a method for effective separation and sensitive detection of glucose-1-phosphate (G1P), glucose-6-phosphate (G6P), sucrose-6-phosphate (S6P) and T6P in plant tissues by chemical derivatization combined with hydrophilic interaction liquid chromatography-tandem mass spectrometry (ChD-HILIC-MS/MS). With this method, two pairs of isomers (G1P/G6P and S6P/T6P) could be well separated on a HILIC column and sensitively detected by MS with limits of detection (LODs) ranging from 0.1 to 0.6 ng mL-1. The developed method was successfully applied to the detection of endogenous G1P, G6P, S6P and T6P in small amounts of plant tissues, such as 1 mg fresh weight of Oryza sativa shoot.


Subject(s)
Chromatography, Liquid , Plants/chemistry , Sugar Phosphates/analysis , Tandem Mass Spectrometry , Trehalose/analogs & derivatives , Hydrophobic and Hydrophilic Interactions , Limit of Detection , Oryza/chemistry , Signal Transduction , Trehalose/analysis
6.
Metab Eng ; 51: 43-49, 2019 01.
Article in English | MEDLINE | ID: mdl-30176394

ABSTRACT

Precise measurement of sugar phosphates in glycolysis and the pentose phosphate (PP) pathway for 13C-metabolic flux analysis (13C-MFA) is needed to understand cancer-specific metabolism. Although various analytical methods have been proposed, analysis of sugar phosphates is challenging because of the structural similarity of various isomers and low intracellular abundance. In this study, gas chromatography-negative chemical ionization-mass spectrometry (GC-NCI-MS) is applied to sugar phosphate analysis with o-(2,3,4,5,6-pentafluorobenzyl) oxime (PFBO) and trimethylsilyl (TMS) derivatization. Optimization of the GC temperature gradient achieved baseline separation of sugar phosphates in 31 min. Mass spectra showed the predominant generation of fragment ions containing all carbon atoms in the sugar phosphate backbone. The limit of detection of pentose 5-phosphates and hexose 6-phosphates was 10 nM. The method was applied to 13C-labeling measurement of sugar phosphates for 13C-MFA of the MCF-7 human breast cancer cell line. 13C-labeling of sugar phosphates for 13C-MFA improved the estimation of the net flux and reversible flux of bidirectional reactions in glycolysis and the PP pathway.


Subject(s)
Cell Line, Tumor , Metabolic Flux Analysis/methods , Sugar Phosphates/analysis , Energy Metabolism , Female , Fluorobenzenes , Gas Chromatography-Mass Spectrometry , Humans , Isomerism , MCF-7 Cells , Oximes , Spectrometry, Mass, Electrospray Ionization , Trimethylsilyl Compounds/metabolism
7.
Methods Mol Biol ; 1778: 71-86, 2018.
Article in English | MEDLINE | ID: mdl-29761432

ABSTRACT

Phosphorylated carbohydrates are central metabolites involved in key plant metabolic pathways, such as glycolysis and central carbon metabolism. Such pathways influence plant growth, development, and stress responses to environmental changes, and ultimately, reflect the plant's energy status. The high polarity of these metabolites, the variety of isomeric structures (e.g., glucose-1-phosphate (G1P)/fructose-6-phosphate (F6P)/mannose-6-phosphate (M6P)/G6P, sucrose-6-phosphate (S6P)/T6P), and rapid metabolic turnover makes their analysis particularly challenging. In this chapter, we describe the use of a set of known phosphorylated carbohydrates to develop and validate a hydrophilic interaction chromatography (HILIC) triple quadrupole (QqQ) tandem mass spectrometry (MS/MS) method in the highly sensitive and selective multiple reaction monitoring (MRM) mode for the target analysis of G1P, F6P, M6P, G6P, S6P, T6P, and the sugar nucleotide uridine 5-diphospho-glucose (UDPG). We present detailed information regarding HILIC column chemistry and practical considerations when coupling it with a QqQ-MS system.


Subject(s)
Sucrose/analogs & derivatives , Sugar Phosphates/analysis , Tandem Mass Spectrometry/methods , Trehalose/analogs & derivatives , Carbohydrate Metabolism , Glucosephosphates/analysis , Glucosephosphates/chemistry , Hydrophobic and Hydrophilic Interactions , Sucrose/analysis , Sucrose/chemistry , Sugar Phosphates/chemistry , Trehalose/analysis , Trehalose/chemistry
8.
Article in English | MEDLINE | ID: mdl-29571119

ABSTRACT

The phosphometabolome is comprised of all phosphorylated metabolites including the major metabolite classes sugar phosphates and nucleoside phosphates. Phosphometabolites are invaluable in any cell as a part of primary- and energy- metabolism, and as building blocks in the biosynthesis of macromolecules. Here, we report quantitative profiling of the phosphometabolome by applying capillary ion chromatography-tandem mass spectrometry (capIC-MS/MS), ensuring improved chromatographic separation, robustness and quantitative precision. Baseline separation was achieved for six out of eight tested hexose phosphates. Quantitative precision and reproducibility was improved by introducing a fully uniformly (U) 13C-labeled biological extract and applying an isotope dilution (ID) correction strategy. A 13C-labeled biological extract does in principle contain internal standards (IS) for all metabolites, but low abundant metabolites pose a challenge, and solutions to this are discussed. The extreme reproducibility and reliability of this capIC-MS/MS method was demonstrated by running the instrumentation continuously for ten days.


Subject(s)
Chromatography, Liquid/methods , Metabolome/physiology , Metabolomics/methods , Sugar Phosphates/analysis , Sugar Phosphates/metabolism , Tandem Mass Spectrometry/methods , Isotope Labeling , Metabolic Networks and Pathways/physiology , Phosphorylation , Sugar Phosphates/chemistry
9.
Plant J ; 92(4): 611-623, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28869799

ABSTRACT

Trehalose 6-phosphate (Tre6P) is a signal of sucrose availability in plants, and has been implicated in the regulation of shoot branching by the abnormal branching phenotypes of Arabidopsis (Arabidopsis thaliana) and maize (Zea mays) mutants with altered Tre6P metabolism. Decapitation of garden pea (Pisum sativum) plants has been proposed to release the dormancy of axillary buds lower down the stem due to changes in sucrose supply, and we hypothesized that this response is mediated by Tre6P. Decapitation led to a rapid and sustained rise in Tre6P levels in axillary buds, coinciding with the onset of bud outgrowth. This response was suppressed by simultaneous defoliation that restricts the supply of sucrose to axillary buds in decapitated plants. Decapitation also led to a rise in amino acid levels in buds, but a fall in phosphoenolpyruvate and 2-oxoglutarate. Supplying sucrose to stem node explants in vitro triggered a concentration-dependent increase in the Tre6P content of the buds that was highly correlated with their rate of outgrowth. These data show that changes in bud Tre6P levels are correlated with initiation of bud outgrowth following decapitation, suggesting that Tre6P is involved in the release of bud dormancy by sucrose. Tre6P might also be linked to a reconfiguration of carbon and nitrogen metabolism to support the subsequent growth of the bud into a new shoot.


Subject(s)
Pisum sativum/enzymology , Sucrose/metabolism , Sugar Phosphates/metabolism , Trehalose/analogs & derivatives , Amino Acids/metabolism , Ketoglutaric Acids/metabolism , Metabolic Networks and Pathways , Models, Biological , Pisum sativum/genetics , Pisum sativum/growth & development , Phosphoenolpyruvate/metabolism , Plant Stems/enzymology , Plant Stems/genetics , Plant Stems/growth & development , Sucrose/analysis , Sugar Phosphates/analysis , Trehalose/analysis , Trehalose/metabolism
10.
Electrophoresis ; 38(1): 190-202, 2017 01.
Article in English | MEDLINE | ID: mdl-27718257

ABSTRACT

CE-MS can be considered a useful analytical technique for the global profiling of (highly) polar and charged metabolites in various samples. Over the past few years, significant advancements have been made in CE-MS approaches for metabolomics studies. In this paper, which is a follow-up of a previous review paper covering the years 2012-2014 (Electrophoresis 2015, 36, 212-224), recent CE-MS strategies developed for metabolomics covering the literature from July 2014 to June 2016 are outlined. Attention will be paid to new CE-MS approaches for the profiling of anionic metabolites and the potential of SPE coupled to CE-MS is also demonstrated. Representative examples illustrate the applicability of CE-MS in the fields of biomedical, clinical, microbial, plant, and food metabolomics. A complete overview of recent CE-MS-based metabolomics studies is given in a table, which provides information on sample type and pretreatment, capillary coatings, and MS detection mode. Finally, general conclusions and perspectives are given.


Subject(s)
Electrophoresis, Capillary/methods , Isotachophoresis/methods , Mass Spectrometry/methods , Metabolomics/methods , Animals , Biomarkers/analysis , Food Analysis , Humans , Nucleotides/analysis , Organic Chemicals/analysis , Plants/chemistry , Sugar Phosphates/analysis , Surface Properties
11.
J Chromatogr A ; 1477: 30-38, 2016 Dec 16.
Article in English | MEDLINE | ID: mdl-27908495

ABSTRACT

Trehalose-6-phosphate (T6P) is an important signaling metabolite involved in plant growth control that inhibits the sucrose nonfermenting-1-related protein kinase 1 (SnRK1), a key regulator of energy and carbon metabolism in plants. The quantification of T6P in plant tissues is fundamental to improve our understanding of sugar signaling and the links between plant growth and development in response to stress conditions. However, the almost undetectable levels of T6P together with the complex plant matrix and the presence of T6P isomers such as sucrose-6-phosphate (S6P), makes the detection of this metabolite challenging. This work describes the development and validation of a hydrophilic interaction chromatography (HILIC) method for the on-line coupling with negative ion electrospray (ESI) triple quadrupole tandem mass spectrometry (MS/MS) in the highly sensitive and selective multiple reaction monitoring (MRM) mode for the target analysis of metabolic intermediates of the biosynthesis of trehalose, including glucose-6-phosphate (G6P), uridine 5-diphospho-glucose (UDPG), T6P (and its isomer S6P). Enhanced signal in the MRM mode and improved chromatographic separation for each compound were obtained using piperidine and methylphosphonic acid as additives in the HILIC mobile phase. The optimized HILIC-ESI-QqQ-MS/MS method increases the range of sensitive analytical methodologies for the quantification of key low-abundant metabolites, and was applied to quantify the fluctuations of S6P, T6P and G6P in Medicago truncatula plants in response to environmental stress. The levels of S6P, T6P, and G6P in M. truncatula plant tissues (roots and leaves) exposed to a water deficit and recovery treatment, ranged from 30 to 150pmolg-1 FW, 16-120pmolg-1 FW, and 330-1690pmolg-1 FW, respectively.


Subject(s)
Chromatography, Liquid/methods , Hydrophobic and Hydrophilic Interactions , Medicago truncatula/metabolism , Metabolome , Sugar Phosphates/analysis , Tandem Mass Spectrometry/methods , Trehalose/analogs & derivatives , Biosynthetic Pathways , Limit of Detection , Plant Leaves/metabolism , Reference Standards , Solutions , Sucrose/analogs & derivatives , Sucrose/metabolism , Sugar Phosphates/metabolism , Trehalose/analysis
12.
Methods Enzymol ; 576: 225-49, 2016.
Article in English | MEDLINE | ID: mdl-27480689

ABSTRACT

The 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway occurs in the plastids of higher plants and in most economically important prokaryotes where it is responsible for the biosynthesis of the isoprenoid building blocks, isopentenyl diphosphate and dimethylallyl diphosphate. These five-carbon compounds are the substrates for the enormous variety of terpenoid products, including many essential metabolites and substances of commercial value. Increased knowledge of the regulation of the MEP pathway is critical to understanding many aspects of plant and microbial metabolism as well as in developing biotechnological platforms for producing these commercially valuable isoprenoids. To achieve this goal, researchers must have the ability to investigate the in vivo kinetics of the pathway by accurately measuring the concentrations of MEP pathway metabolites. However, the low levels of these metabolites complicate their accurate determination without suitable internal standards. This chapter describes a sensitive method to accurately determine the concentrations of MEP pathway metabolites occurring at trace amounts in biological samples using liquid chromatography coupled to triple quadrupole mass spectrometry. In addition, simple protocols are given for producing stable isotope-labeled internal standards for these analyses.


Subject(s)
Arabidopsis/metabolism , Chromatography, Liquid/methods , Erythritol/analogs & derivatives , Escherichia coli/metabolism , Mass Spectrometry/methods , Sugar Phosphates/metabolism , Arabidopsis/chemistry , Erythritol/analysis , Erythritol/metabolism , Escherichia coli/chemistry , Isotope Labeling/methods , Metabolic Networks and Pathways , Sugar Phosphates/analysis
13.
J Chromatogr A ; 1457: 125-33, 2016 Jul 29.
Article in English | MEDLINE | ID: mdl-27371021

ABSTRACT

Sugar phosphates are a type of key metabolic intermediates of glycolysis, gluconeogenesis and pentose phosphate pathway, which can regulate tumor energetic metabolism. Due to their low endogenous concentrations, poor chromatographic retention properties as well as ionization suppression from complex matrix interference, the determination of sugar phosphates in biological samples is very difficult. In this study, titanium-immobilized hydrophilic polydopamine-coated silica microspheres (SiO2@PD-Ti(4+)) were synthesized for highly efficient solid-phase derivatization of sugar phosphates. Sugar phosphates were selectively captured onto the surface of the SiO2@PD-Ti(4+) microspheres by chelating with phosphate groups, and then reacted with 3-amino-9-ethylcarbazole via reductive amination based on solid-phase derivatization, which could not only increase the retention and resolution of sugar phosphates on reversed-phase liquid chromatography (RPLC), but also improve the mass spectrometry (MS) sensitivity of sugar phosphates. The adsorption capacity of SiO2@PD-Ti(4+) microspheres towards glucose-6-phosphate is 0.76mg/g, which is much larger than that of commercial TiO2. Compared with the traditional liquid-phase derivatization, the solid-phase derivatization based on the SiO2@PD-Ti(4+) microspheres displayed several superiorities including shorter derivatization time (within 10min), higher product purity and much lower limit of detection (up to 38pmol/L). In addition, good linearity (R(2)≥0.99), excellent recovery (80.6-118%) and high precision (RSDs with 2.8-7.8%) were obtained when the developed method was used for quantitative analysis of sugar phosphates. Finally, the SiO2@PD-Ti(4+) microspheres combined with RPLC-MS were successfully applied to the determination of sugar phosphates from hepatocarcinoma cell lines and could even detect the trace sugar phosphates in thousands of cells.


Subject(s)
Indoles/chemistry , Polymers/chemistry , Silicon Dioxide/chemistry , Sugar Phosphates/analysis , Titanium/chemistry , Adsorption , Carbazoles/analysis , Chromatography, Reverse-Phase , Humans , Hydrophobic and Hydrophilic Interactions , Mass Spectrometry , Microspheres
14.
Anal Bioanal Chem ; 408(20): 5651-6, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27271261

ABSTRACT

The study aim was to unambiguously assign nucleotide sugars, mainly UDP-X that are known to be important in glycosylation processes as sugar donors, and glucose-phosphates that are important intermediate metabolites for storage and transfer of energy directly in spectra of intact cells, as well as in skeletal muscle biopsies by (1)H high-resolution magic-angle-spinning (HR-MAS) NMR. The results demonstrate that sugar phosphates can be determined quickly and non-destructively in cells and biopsies by HR-MAS, which may prove valuable considering the importance of phosphate sugars in cell metabolism for nucleic acid synthesis. As proof of principle, an example of phosphate-sugar reaction and degradation kinetics after unfreezing the sample is shown for a cardiac muscle, suggesting the possibility to follow by HR-MAS NMR some metabolic pathways. Graphical abstract Glucose-phosphate sugars (Glc-1P and Glc-6P) detected in muscle by 1H HR-MAS NMR.


Subject(s)
Muscle, Skeletal/chemistry , Neoplasms, Experimental/chemistry , Proton Magnetic Resonance Spectroscopy/methods , Sugar Phosphates/analysis , Sugar Phosphates/chemistry , Animals , Cell Line, Tumor , Humans , Reproducibility of Results , Sensitivity and Specificity , Sheep
15.
J Pharm Biomed Anal ; 115: 402-9, 2015 Nov 10.
Article in English | MEDLINE | ID: mdl-26279371

ABSTRACT

Analysis of nucleotide sugars, nucleoside di- and triphosphates and sugar-phosphates is an essential step in the process of understanding enzymatic pathways. A facile and rapid separation method was developed to analyze these compounds present in an enzymatic reaction mixture utilized to produce nucleotide sugars. The Primesep SB column explored in this study utilizes hydrophobic interactions as well as electrostatic interactions with the phosphoric portion of the nucleotide sugars. Ammonium formate buffer was selected due to its compatibility with mass spectrometry. Negative ion mode mass spectrometry was adopted for detection of the sugar phosphate (fucose-1-phophate), as the compound is not amenable to UV detection. Various mobile phase conditions such as pH, buffer concentration and organic modifier were explored. The semi-preparative separation method was developed to prepare 30mg of the nucleotide sugar. (19)F NMR was utilized to determine purity of the purified fluorinated nucleotide sugar. The collected nucleotide sugar was found to be 99% pure.


Subject(s)
Carbohydrates/analysis , Chromatography, High Pressure Liquid , Mass Spectrometry , Nucleotides/analysis , Buffers , Fucose/analogs & derivatives , Fucose/analysis , Hexosephosphates/analysis , Hydrogen-Ion Concentration , Hydrophobic and Hydrophilic Interactions , Magnetic Resonance Spectroscopy , Molecular Structure , Nucleoside Diphosphate Sugars/analysis , Solvents/chemistry , Static Electricity , Sugar Phosphates/analysis
16.
Science ; 348(6240): 1251-5, 2015 Jun 12.
Article in English | MEDLINE | ID: mdl-26068852

ABSTRACT

Host recognition of pathogen-associated molecular patterns (PAMPs) initiates an innate immune response that is critical for pathogen elimination and engagement of adaptive immunity. Here we show that mammalian cells can detect and respond to the bacterial-derived monosaccharide heptose-1,7-bisphosphate (HBP). A metabolic intermediate in lipopolysaccharide biosynthesis, HBP is highly conserved in Gram-negative bacteria, yet absent from eukaryotic cells. Detection of HBP within the host cytosol activated the nuclear facto κB pathway in vitro and induced innate and adaptive immune responses in vivo. Moreover, we used a genome-wide RNA interference screen to uncover an innate immune signaling axis, mediated by phosphorylation-dependent oligomerization of the TRAF-interacting protein with forkhead-associated domain (TIFA) that is triggered by HBP. Thus, HBP is a PAMP that activates TIFA-dependent immunity to Gram-negative bacteria.


Subject(s)
Adaptor Proteins, Signal Transducing/immunology , Gram-Negative Bacteria/immunology , Host-Pathogen Interactions/immunology , Immunity, Innate , Sugar Phosphates/immunology , Adaptor Proteins, Signal Transducing/metabolism , Burkholderia/immunology , Cytosol/chemistry , Cytosol/immunology , Escherichia coli/immunology , Flagellin/immunology , Genetic Testing , Gram-Negative Bacteria/metabolism , HEK293 Cells , Host-Pathogen Interactions/genetics , Humans , Jurkat Cells , NF-kappa B/immunology , Neisseria gonorrhoeae/immunology , Neisseria meningitidis/immunology , RNA Interference , Sugar Phosphates/analysis , Sugar Phosphates/metabolism , TNF Receptor-Associated Factor 6/immunology , TNF Receptor-Associated Factor 6/metabolism
17.
Anal Bioanal Chem ; 407(10): 2865-75, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25673246

ABSTRACT

Metabolic flux analysis is based on the measurement of isotopologue ratios. In this work, a new GC-MS-based method was introduced enabling accurate determination of isotopologue distributions of sugar phosphates in cell extracts. A GC-TOFMS procedure was developed involving a two-step online derivatization (ethoximation followed by trimethylsilylation) offering high mass resolution, high mass accuracy and the potential of retrospective data analysis typical for TOFMS. The information loss due to fragmentation intrinsic for isotopologue analysis by electron ionization could be overcome by chemical ionization with methane. A thorough optimization regarding pressure of the reaction gas, emission current, electron energy and temperature of the ion source was carried out. For a substantial panel of sugar phosphates both of the glycolysis and the pentose phosphate pathway, sensitive determination of the protonated intact molecular ions together with low abundance fragment ions was successfully achieved. The developed method was evaluated for analysis of Pichia pastoris cell extracts. The measured isotopologue ratios were in the range of 55:1-2:1. The comparison of the experimental isotopologue fractions with the theoretical fractions was excellent, revealing a maximum bias of 4.6% and an average bias of 1.4%.


Subject(s)
Gas Chromatography-Mass Spectrometry/methods , Pichia/chemistry , Sugar Phosphates/analysis , Cell Extracts/analysis , Cell Extracts/chemistry , Gas Chromatography-Mass Spectrometry/instrumentation , Methane/chemistry
18.
Analyst ; 139(6): 1512-20, 2014 Mar 21.
Article in English | MEDLINE | ID: mdl-24471156

ABSTRACT

A mass spectrometric quantitative assay was developed for the analysis of 10 sugar phosphates in the yeast Pichia pastoris. As a novelty, two-dimensional chromatography based on a fully automated heart-cutting LC-LC technique was introduced. Using a ten-port valve, ten fractions of the first chromatographic dimension, i.e. anion exchange chromatography (AEC), were transferred and separated by the orthogonal second dimension, i.e. separation on porous graphitized carbon. The chromatographic separation on the second dimension was optimized for each transferred fraction minimizing the separation time and ensuring complete removal of the salt constituents of the AEC eluents. The latter being crucial for electrospray mass spectrometric detection was confirmed by combining the LC-LC separation with on-line ICP-MS detection. These measurements showed that sodium elution was completed after 0.8 min. Consequently, an analysis time of 1 min per transferred peak was established. In this way, the excellent peak capacity given by ion exchange could be conserved in the second dimension at the same time enabling mass spectrometric detection. Sub-µM limits of detection could be obtained by the new LC-LC-MS/MS methods ranging between 0.03 and 0.19 µM for the investigated compounds (only 3GAP showed a LOD of 1 µM). The method was applied to the quantification of ten sugar phosphates in yeast extracts utilizing internal standardization with a fully labeled (13)C yeast extract. Typically, the standard uncertainties for N = 3 replicates assessed by the LC-LC-MS/MS set-up were <5%.


Subject(s)
Chromatography, Liquid/instrumentation , Pichia/chemistry , Spectrometry, Mass, Electrospray Ionization/instrumentation , Sugar Phosphates/analysis , Equipment Design , Limit of Detection , Sugar Phosphates/isolation & purification , Tandem Mass Spectrometry/instrumentation
19.
Gut Microbes ; 5(1): 58-63, 2014.
Article in English | MEDLINE | ID: mdl-24256737

ABSTRACT

Bacteria survive under various conditions by sensing stimuli triggering specific adaptive physiological responses, which are often based on membrane-integrated sensors connected to a cytoplasmic regulator. Recent studies reveal that mucus glycans may act as signal molecules for two-component systems involved in intestinal colonization. Bacillus cereus, a human and insect opportunistic pathogen was used to identify bacterial factors expressed in an insect gut infection model. The screen revealed a promoter involved in the expression of a gene with so far unknown functions. A search for gut-related compounds, inducing its transcription, identified glucose-6-phosphate as an activation signal. The gene is part of a five-gene cluster, including a two-component system. Interestingly such five gene loci are conserved in the pathogenic Bacillus group as well as in various Clostridia bacteria and are with analogy to other multi-component sensor systems in enteropathogenic bacteria, such as E. coli. Thus our results provide insights into the function of two-component and auxiliary sensor systems in host-microbe interactions and opens up possible investigations of such systems in other gut associated bacteria.


Subject(s)
Bacillus cereus/genetics , Bacterial Proteins/genetics , Glucose-6-Phosphate/pharmacology , Sugar Phosphates/analysis , Animals
20.
Menopause ; 21(2): 170-6, 2014 Feb.
Article in English | MEDLINE | ID: mdl-23760430

ABSTRACT

OBJECTIVE: Visceral fat accumulation and metabolic syndrome incidence among women increase after menopause; therefore, fat metabolic changes and fat redistribution may occur according to menstrual status. The aim of our study was to clarify differences in subcutaneous and visceral adipose tissue metabolism between premenopausal and postmenopausal women, using metabolomics. METHODS: Thirty-nine (16 premenopausal and 23 postmenopausal) women were recruited through elective gynecologic surgery, and both subcutaneous and visceral adipose tissues were collected during surgical operation. Metabolite profiling of adipose tissue was performed by capillary electrophoresis with electrospray ionization time-of-flight mass spectrometry. RESULTS: Sedoheptulose 7-phosphate, a midproduct of the pentose phosphate pathway, was significantly higher (P < 0.05) in visceral adipose tissues of premenopausal women. Dihydroxyacetone phosphate and fructose-1,6-biphosphate, midproducts of glycolysis, were significantly higher (P < 0.05) in subcutaneous adipose tissues of postmenopausal women. The concentrations of fatty acid metabolites-heptanoate (C7:0; premenopausal vs postmenopausal, 4.07 [0.72] vs 2.64 [0.28] nmol/g), octanoate (C8:0; 3.52 [0.29] vs 5.20 [0.29] nmol/g), and pelargonate (C9:0; 8.03 [0.49] vs 10.66 [0.44] nmol/g)-in the visceral fat (but not in subcutaneous fat) of postmenopausal women were significantly higher (P < 0.05) than those in the visceral fat of premenopausal women. CONCLUSIONS: Fatty acid metabolites increase in visceral fat (but not in subcutaneous fat) after menopause. The change in fatty acid metabolism in visceral adipose tissues might be related to metabolic syndrome in postmenopausal women.


Subject(s)
Fatty Acids/metabolism , Intra-Abdominal Fat/metabolism , Postmenopause/metabolism , Subcutaneous Fat/metabolism , Adult , Body Composition , Cytokines/metabolism , Dihydroxyacetone Phosphate/analysis , Estradiol/blood , Fatty Acids/pharmacology , Female , Fructosediphosphates/analysis , Humans , Intra-Abdominal Fat/chemistry , Macrophages/drug effects , Macrophages/metabolism , Metabolic Syndrome/metabolism , Metabolomics , Middle Aged , Premenopause/metabolism , Subcutaneous Fat/chemistry , Sugar Phosphates/analysis
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